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Alignment for radish unigene UN20243

               1      -     51
UN20243        --> GGGAGAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896116       <-- .GGAGAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTTTG
FD529604       <-- .GGAGAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTT-G
FD943831       <-- .GGAGAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTT-G
FD961176       <-- .GGAGAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTTTG
FD575001       <-- ...............................TTTTTTAATTATTTTTT-G
EW730924       <-- .................................................G
EW737687       <-- .................................................G
FD961702       <-- ..................................................
FD571117       --> GGGGGAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTT-G
FD580742       --> GGGAGAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTTTG
EV566573       --> .GGAGAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTTTG
EW725756       --> .GGAGAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTT-G
EY899517       --> .GGAGAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTTTG
EY900620       --> .GGAGAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTTTG
EY948256       --> .GGAGAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTTTG
FD533417       --> .GGAGAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTT-G
FD947982       --> .GGAGAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTT-G
FD962451       --> .GGAGAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTTTG
FD965433       --> .GGAGAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTTTG
EW733560       --> ...gGAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTTTG
FD580584       --> ....GAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTTTG
FD941952       --> ..ggGAAAACCAAAAAAAGAAAAATAAGTTATTTTCTAATTATTTTTTTG
FD966163       --> ...gGAAAACCAAAAAA-GAAAAATAAGTTATTTTCTAATTATTTTTTTG
FD561329       --> ..................................................

               51     -    101
UN20243        --> GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896116       <-- -AAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
FD529604       <-- GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
FD943831       <-- GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
FD961176       <-- GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
FD575001       <-- GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
EW730924       <-- GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
EW737687       <-- GAAGAAAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
FD961702       <-- ......................GATGGAGAGGAATTGCAGTATGTTGCCT
FD571117       --> GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
FD580742       --> GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
EV566573       --> GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
EW725756       --> GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
EY899517       --> GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
EY900620       --> -AAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
EY948256       --> GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
FD533417       --> GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
FD947982       --> GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
FD962451       --> GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
FD965433       --> GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
EW733560       --> GAAGAAAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
FD580584       --> GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
FD941952       --> GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
FD966163       --> GAAGACAACATCATGAACAGCGGATGGAGAGGAATTGCAGTATGTTGCCT
FD561329       --> .....................GGATGGAGAGGAATTGCAGTATGTTGCCT

               101    -    151
UN20243        --> CTTAACAATTTTGGTTTTAACCACTGCTTTTGTTATCGGAGTCGACTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896116       <-- CTTAACAATTTTGGT-CTAACCACTGCTTTTGTTATCGGAGTCGACTCTG  Raphanus raphanistrum subsp. maritimus
FD529604       <-- CTTAACAATTTTGGTTTTAACCACTGCTTTTGTTATCGGAGTCGACTCTG  Raphanus raphanistrum subsp. maritimus
FD943831       <-- CTTAACAATTTTGGTTGTAACCACTTCTTTTGTTATCGGAGTCGACTCTG  Raphanus sativus cv Early Scarlet Globe
FD961176       <-- CTTAACAATTTTGGTTTTAACCACTGCTTTTGTTATCGGAGTCGACTCTG  Raphanus raphanistrum subsp. maritimus
FD575001       <-- CTTAACAATTTTGGTTGTAACCACTTCTTTTGTTATCGGAGTCGACTCTG  Raphanus sativus cv Early Scarlet Globe
EW730924       <-- CTTAACAATTTTGGTTGTAACCACTTCTTTTGTTATCGGAGTCGACTCTG  Raphanus sativus cv Early Scarlet Globe
EW737687       <-- CTTAACAATTTTGGTTTTAACCACTGCTTTTGTTATCGGAGTCGACTCTG  Raphanus sativus cv Rat-Tail Radish #3870
FD961702       <-- CTTAACAATTTTGGTTTTAACCACTGCTTTTGTTATCGGAGTCGACTCTG  Raphanus raphanistrum subsp. maritimus
FD571117       --> CTTAACAATTTTGGTTGTAACCACTTCTTTTGTTATCGGAGTCGACTCTG  Raphanus sativus cv Early Scarlet Globe
FD580742       --> CTTAACAATTTTGGTTTTAACCACTGCTTTTGTTATCGGAGTCGACTCTG  Raphanus sativus cv Rat-Tail Radish #3870
EV566573       --> CTTAACAATTTTGGTTTTAACCACTGCTTTTGTTATCGGAGTCGACTCTG  Raphanus raphanistrum subsp. landra
EW725756       --> CTTAACAATTTTGGTTGTAACCACTTCTTTTGTTATCGGAGTCGACTCTG  Raphanus sativus cv Early Scarlet Globe
EY899517       --> CTTAACAATTTTGGTTTTAACCACTGCTTTTGTTATCGGAGTCGACTCTG  Raphanus raphanistrum subsp. maritimus
EY900620       --> CTTAACAATTTTGGT-CTAACCACTGCTTTTGTTATCGGAGTCGACTCTG  Raphanus raphanistrum subsp. maritimus
EY948256       --> CTTAACAATTTTGGTTTTAACCACTGCTTTTGTTATCGGAGTCGACTCTG  Raphanus sativus cv Rat-Tail Radish #3870
FD533417       --> CTTAACAATTTTGGTTTTAACCACTGCTTTTGTTATCGGAGTCGACTCTG  Raphanus raphanistrum subsp. maritimus
FD947982       --> CTTAACAATTTTGGTTGTAACCACTTCTTTTGTTATCGGAGTCGACTCTG  Raphanus sativus cv Early Scarlet Globe
FD962451       --> CTTAACAATTTTGGTTT-AACCACTGCTTTTGTTATCGGAGTCGACTCTG  Raphanus raphanistrum subsp. maritimus
FD965433       --> CTTAACAATTTTGGTTTTAACCACTGCTTTTGTTATCGGAGTCGACTCTG  Raphanus raphanistrum subsp. maritimus
EW733560       --> CTTAACAATTTTGGTTTTAACCACTGCTTTTGTTATCGGAGTCGACTCTG  Raphanus sativus cv Rat-Tail Radish #3870
FD580584       --> CTTAACAATTTTGGTTTTAACCACTGCTTTTGTTATCGGAGTCGACTCTG  Raphanus sativus cv Rat-Tail Radish #3870
FD941952       --> CTTAACAATTTTGGTTTTAACCACTGCTTTTGTTATCGGAGTCGACTCTG  Raphanus sativus var. oleiformis
FD966163       --> CTTAACAATTTTGGTTTTAACCACTGCTTTTGTTATCGGAGTCGACTCTG  Raphanus raphanistrum subsp. maritimus
FD561329       --> CTTAACAATTTTGGTTTTAACCACTGCTTTTGTTATCGGAGTCGACTCTG  Raphanus sativus var. oleiformis

               151    -    201
UN20243        --> TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896116       <-- TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
FD529604       <-- TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
FD943831       <-- TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
FD961176       <-- TTGGAGAAGCTTCTCATACCACTCCGATGGAATTTCGTAAATGTTGGGAC
FD575001       <-- TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
EW730924       <-- TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
EW737687       <-- TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
FD961702       <-- TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
FD571117       --> TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
FD580742       --> TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
EV566573       --> TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
EW725756       --> TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
EY899517       --> TTGGAGAAGCCTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
EY900620       --> TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
EY948256       --> TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
FD533417       --> TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
FD947982       --> TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
FD962451       --> TTGGAGAAGCTTCTCATGCCACTCCGATGGTATTTCGTAAtgtg......
FD965433       --> TTGGAGAAGCTTCTCATACCACTCCGATGGAATTTCGTAAATGTTGGGAC
EW733560       --> TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
FD580584       --> TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
FD941952       --> TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC
FD966163       --> TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGA..
FD561329       --> TTGGAGAAGCTTCTCATGCCACTCCGATGGAATTTCGTAAATGTTGGAAC

               201    -    251
UN20243        --> TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGGAGGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896116       <-- TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGGAGGTTA
FD529604       <-- TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGGAGGTTA
FD943831       <-- TCTGGCAAAAAAGGGCGCCAAATGCACTCCCGCCCGGTGCTTGGAGGTTA
FD961176       <-- TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGGAGGTTA
FD575001       <-- TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGGAGGTTA
EW730924       <-- TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGGAGGTTA
EW737687       <-- TCTGGCAAAAAAGGGTGCCAAATGCACTCCCCCCCGGTGCTTGGAGGTTA
FD961702       <-- TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGGAGGTTA
FD571117       --> TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGGAGGTTA
FD580742       --> TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGGAGGTTA
EV566573       --> TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGGAGGTTA
EW725756       --> TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGGAGGTTA
EY899517       --> TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGAAGGTTA
EY900620       --> TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGGAGGTTA
EY948256       --> TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGGAGGTTA
FD533417       --> TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGGAGGTTA
FD947982       --> TCTGGCAAAAAAGGGCGCCAAATGCACTCCCGCCCGGTGCTTGGAGGTTA
FD962451       --> ..................................................
FD965433       --> TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGGAGGTTA
EW733560       --> TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGGAGGTTA
FD580584       --> TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCCTGGAGGTTA
FD941952       --> TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGAAGGTTA
FD966163       --> ..................................................
FD561329       --> TCTGGCAAAAAAGGGTGCCAAATGCACTCCCGCCCGGTGCTTGAAGGTTA

               251    -    301
UN20243        --> TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATTTTAGCGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896116       <-- TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATTTTAGCGTAT  Raphanus raphanistrum subsp. maritimus
FD529604       <-- TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATTTTAGCGTAT  Raphanus raphanistrum subsp. maritimus
FD943831       <-- TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATGTTAGCTTAT  Raphanus sativus cv Early Scarlet Globe
FD961176       <-- TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATTTTAGCGTAT  Raphanus raphanistrum subsp. maritimus
FD575001       <-- TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATGTTAGCTTAT  Raphanus sativus cv Early Scarlet Globe
EW730924       <-- TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATGTTAGCTTAT  Raphanus sativus cv Early Scarlet Globe
EW737687       <-- TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATTTTAGCGTAT  Raphanus sativus cv Rat-Tail Radish #3870
FD961702       <-- TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATTTTAGCGTAT  Raphanus raphanistrum subsp. maritimus
FD571117       --> TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATGTTAGCTTAT  Raphanus sativus cv Early Scarlet Globe
FD580742       --> TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATTTTAGCGTAT  Raphanus sativus cv Rat-Tail Radish #3870
EV566573       --> TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATTTTAGCGTAT  Raphanus raphanistrum subsp. landra
EW725756       --> TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATGTTAGCTTAT  Raphanus sativus cv Early Scarlet Globe
EY899517       --> TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATTTTAGCGTAT  Raphanus raphanistrum subsp. maritimus
EY900620       --> TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATTTTAGCGTAT  Raphanus raphanistrum subsp. maritimus
EY948256       --> TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATTTTAGCGTAT  Raphanus sativus cv Rat-Tail Radish #3870
FD533417       --> TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATTTTAGCGTAT  Raphanus raphanistrum subsp. maritimus
FD947982       --> TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATGTTAGCTTAT  Raphanus sativus cv Early Scarlet Globe
FD962451       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD965433       --> TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATTTTAGCGTAT  Raphanus raphanistrum subsp. maritimus
EW733560       --> TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATTTTAGCGTAT  Raphanus sativus cv Rat-Tail Radish #3870
FD580584       --> TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATTTTAGTGTAT  Raphanus sativus cv Rat-Tail Radish #3870
FD941952       --> TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATTTTAGCGTAT  Raphanus sativus var. oleiformis
FD966163       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD561329       --> TAAAGAGTGCTGGTGCATCCGTGCATAGATAAATGATCATTTTAGCGTAT  Raphanus sativus var. oleiformis

               301    -    351
UN20243        --> AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896116       <-- AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
FD529604       <-- AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGT............
FD943831       <-- AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
FD961176       <-- AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
FD575001       <-- AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
EW730924       <-- AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
EW737687       <-- AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
FD961702       <-- AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
FD571117       --> AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
FD580742       --> AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
EV566573       --> AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
EW725756       --> AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
EY899517       --> AGTAATAAATTCTACAATGAAACTTACTAGTTACTAGTTATTACAATAAA
EY900620       --> AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
EY948256       --> AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
FD533417       --> AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
FD947982       --> AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
FD962451       --> ..................................................
FD965433       --> AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
EW733560       --> AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
FD580584       --> AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
FD941952       --> AGTGATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA
FD966163       --> ..................................................
FD561329       --> AGTAATAAATTCTACAAGGAAACTTACTAGTTACTAGTTATTACAATAAA

               351    -    401
UN20243        --> ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTT----TAAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896116       <-- ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTT----TAAGTC  Raphanus raphanistrum subsp. maritimus
FD529604       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD943831       <-- ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTTAATTTAAGCC  Raphanus sativus cv Early Scarlet Globe
FD961176       <-- ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTT----TAAGTC  Raphanus raphanistrum subsp. maritimus
FD575001       <-- ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTTAATTTAAGTC  Raphanus sativus cv Early Scarlet Globe
EW730924       <-- ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTTAATTTAAGTC  Raphanus sativus cv Early Scarlet Globe
EW737687       <-- ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTT----TAAGTC  Raphanus sativus cv Rat-Tail Radish #3870
FD961702       <-- ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTT----TAAGTC  Raphanus raphanistrum subsp. maritimus
FD571117       --> ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTTAATTTAAGTC  Raphanus sativus cv Early Scarlet Globe
FD580742       --> ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTT----TAAGTC  Raphanus sativus cv Rat-Tail Radish #3870
EV566573       --> ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTT----TAAGTC  Raphanus raphanistrum subsp. landra
EW725756       --> ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTTAATTTAAGTC  Raphanus sativus cv Early Scarlet Globe
EY899517       --> ATACATCATAATTTATTTC-TTAAGTTAAGACTAATGTTT----TAAGTC  Raphanus raphanistrum subsp. maritimus
EY900620       --> ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTT----TAAGTC  Raphanus raphanistrum subsp. maritimus
EY948256       --> ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTT----TAAGTC  Raphanus sativus cv Rat-Tail Radish #3870
FD533417       --> ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTT----TAAGTC  Raphanus raphanistrum subsp. maritimus
FD947982       --> ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTTAATTTAAGCC  Raphanus sativus cv Early Scarlet Globe
FD962451       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD965433       --> ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTT----TAAGTC  Raphanus raphanistrum subsp. maritimus
EW733560       --> ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTT----TAAGTC  Raphanus sativus cv Rat-Tail Radish #3870
FD580584       --> ATACATCATAATTTATTTCGTTAAGTTAAGGCTAATGTTT----TAAGTC  Raphanus sativus cv Rat-Tail Radish #3870
FD941952       --> ATACATCATAATTTATTTCGTTAAGTTAAGACTAATGTTT----TAAGTC  Raphanus sativus var. oleiformis
FD966163       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD561329       --> ATACATCATAATTTATTTCGTTAGGTTAAGACTAATGTTT----TAAGTC  Raphanus sativus var. oleiformis

               401    -    451
UN20243        --> TTTTTAAAAAATAAATATGTTCCATACAATAAAATGTTCATATCTAAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896116       <-- TTTTTAAAAAATAAATATGTTCCATACAATAAAATGTTCATATCTAAATT  Raphanus raphanistrum subsp. maritimus
FD529604       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD943831       <-- TTTTTAAAAA--AAATATGTTCCATACAATAAAATGTTCATATCTAAATT  Raphanus sativus cv Early Scarlet Globe
FD961176       <-- TTTTTAAAAAATAAATATGTTCCATACAATc...................  Raphanus raphanistrum subsp. maritimus
FD575001       <-- TTTTTAAAAA--AAATATGTTCCATACAATAAAATGTTCATATCTAAATT  Raphanus sativus cv Early Scarlet Globe
EW730924       <-- TTTTTAAAAA--AAATATGTTCCATACAATAAAATGTTCATATCTAAATT  Raphanus sativus cv Early Scarlet Globe
EW737687       <-- TTTTTAAAAAATAAATATGTTCCATACAATAAAATGTTCATATCTAAATT  Raphanus sativus cv Rat-Tail Radish #3870
FD961702       <-- TTTTTAAAAAATAAATATGTTCCATACAATAAAATGTTCATATCTAAATT  Raphanus raphanistrum subsp. maritimus
FD571117       --> TTTTTAAAAAA--AATATGTTCCATACAATAAAATGTTCATATCTAAATT  Raphanus sativus cv Early Scarlet Globe
FD580742       --> TTTTTAAAAAATAAATATGTTCTATACAATAAAATGTTCATATCTAAATT  Raphanus sativus cv Rat-Tail Radish #3870
EV566573       --> TTTTTAAAAAATAAATATGTTCCATACAATAAAATGTTCATATCTAAATT  Raphanus raphanistrum subsp. landra
EW725756       --> TTTTTAAAAAA--AATATGTTCCATACAATAAAATGTTCATATCTAAATT  Raphanus sativus cv Early Scarlet Globe
EY899517       --> TTTTTAAAAAATAAATATGTTCCATAC.......................  Raphanus raphanistrum subsp. maritimus
EY900620       --> TTTTTAAAAAATAAATATGTTCCATACAATAAAATGTTCATATCTAAATT  Raphanus raphanistrum subsp. maritimus
EY948256       --> TTTTTAAAAAATAAATATGTTCCATACAATAAAATGTTCATATCTAAATT  Raphanus sativus cv Rat-Tail Radish #3870
FD533417       --> TTTTTAAAAAATAAATATGTTCCATACAATAAAATGTTCATATCTAAATT  Raphanus raphanistrum subsp. maritimus
FD947982       --> TTTTTAAAAAA--AATATGTTCCATACAATAAAATGTTCATATCTAAATT  Raphanus sativus cv Early Scarlet Globe
FD962451       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD965433       --> TTTTTAAAAAATAAATATGTTCCATACAATc...................  Raphanus raphanistrum subsp. maritimus
EW733560       --> TTTTTAAAAAATAAATATGTTCCATACAATAAAATGTTCATATCTAAATT  Raphanus sativus cv Rat-Tail Radish #3870
FD580584       --> TTTTTAAAAAATAAATATGTTCCATACAATAAAATGTTCATATCTAAATT  Raphanus sativus cv Rat-Tail Radish #3870
FD941952       --> TTTTTAAAAAATAAATATGTTCCATAC.......................  Raphanus sativus var. oleiformis
FD966163       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD561329       --> TTTTTAAAAAATAAATATGTTCCATACAATAAAATGTTCATATCTAAATT  Raphanus sativus var. oleiformis

               451    -    501
UN20243        --> AAATAAATTCCAGGTTATATATTTTAAGTATGACAATACGTTTCTAGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896116       <-- ..................................................
FD529604       <-- ..................................................
FD943831       <-- AAATAAATTCCAGGTTATAc..............................
FD961176       <-- ..................................................
FD575001       <-- AAATAAATTCCAGGTTATAT..............................
EW730924       <-- AAATAAATTCCAGGTTATATATTTTAAGc.....................
EW737687       <-- AAATAAATTCCAGGTTATAT..............................
FD961702       <-- ..................................................
FD571117       --> AAATAAATTCCAGGTTATAT..............................
FD580742       --> AAATAAATTCCAGGTTATATATTTTAAGTATGACAATACGTTTCTAGCTA
EV566573       --> AAATAAATTCCAGGTTATAT..............................
EW725756       --> AAATAAATTCCAGGTTATATATTTTAAGc.....................
EY899517       --> ..................................................
EY900620       --> ..................................................
EY948256       --> AAATAAATTCCAGGTTATAT..............................
FD533417       --> ..................................................
FD947982       --> AAATAAATTCCAGGTTATAc..............................
FD962451       --> ..................................................
FD965433       --> ..................................................
EW733560       --> AAATAAATTCCAGGTTATAT..............................
FD580584       --> AAATAAATTCCAGGTTATAT..............................
FD941952       --> ..................................................
FD966163       --> ..................................................
FD561329       --> AAATAAATTCCAGGTTATATATTTTAAGTATGACAATACGTTTCTAGCTA

               501    -    551
UN20243        --> GGAAAAACTAGTGACTTTTTCTGTGTAATTGTACATCAAAGATTCAAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY896116       <-- ..................................................
FD529604       <-- ..................................................
FD943831       <-- ..................................................
FD961176       <-- ..................................................
FD575001       <-- ..................................................
EW730924       <-- ..................................................
EW737687       <-- ..................................................
FD961702       <-- ..................................................
FD571117       --> ..................................................
FD580742       --> GGAAAAACTAGTGACTTTTT-TCTGTAATTGTACATCAA-GATTCAAAAC
EV566573       --> ..................................................
EW725756       --> ..................................................
EY899517       --> ..................................................
EY900620       --> ..................................................
EY948256       --> ..................................................
FD533417       --> ..................................................
FD947982       --> ..................................................
FD962451       --> ..................................................
FD965433       --> ..................................................
EW733560       --> ..................................................
FD580584       --> ..................................................
FD941952       --> ..................................................
FD966163       --> ..................................................
FD561329       --> GGAAAAACTAGTGACTTTTTCTGTCTAATTGTACATCAAAGATTCAAAAC

               551    -    601
UN20243        --> AAAAGAAAAAA
                   ~~~~~~~~~~~
EY896116       <-- ...........
FD529604       <-- ...........
FD943831       <-- ...........
FD961176       <-- ...........
FD575001       <-- ...........
EW730924       <-- ...........
EW737687       <-- ...........
FD961702       <-- ...........
FD571117       --> ...........
FD580742       --> AAAAGAAAAA.
EV566573       --> ...........
EW725756       --> ...........
EY899517       --> ...........
EY900620       --> ...........
EY948256       --> ...........
FD533417       --> ...........
FD947982       --> ...........
FD962451       --> ...........
FD965433       --> ...........
EW733560       --> ...........
FD580584       --> ...........
FD941952       --> ...........
FD966163       --> ...........
FD561329       --> AAAAGAAAAAA