1      -     51
UN20325        --> CATTAGCGAGTCATTGGTTGACCTTGATTGTTGCGTACTGAGCAAGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537407       <-- ...........................TTGTTGCGTACTGAGCAAGAAAG
FD542834       <-- .......................................cgGCAAGAAAG
EY905590       <-- .................................................G
FD536290       <-- ..................................................
FD939264       <-- ..................................................
EX772162       <-- ..................................................
FD974187       <-- ..................................................
EY931261       <-- ..................................................
FD986295       <-- ..................................................
EV538302       <-- ..................................................
EV547641       <-- ..................................................
EY933476       <-- ..................................................
EX750302       <-- ..................................................
EY899169       <-- ..................................................
EV541640       --> CATTAGCGAGTCATTGGTTGACCTTGATTGTTGCGTACTGAGCAAGAAAG
FD538804       --> .......................................cgGCAAGAAAG
FD531787       --> ..................................................
FD935427       --> ..................................................
FD554534       --> ..................................................
FD982569       --> ..................................................
FD529007       --> ..................................................
EX753802       --> ..................................................

               51     -    101
UN20325        --> AAAGAAACAACCATAAAAAGTTCCGACTGAAACTTCAGTTACAAACCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537407       <-- AAAGAAACAACCATAAAAAGTTCCGACTGAAACTTCAGTTACAAACCCCA
FD542834       <-- AAAGAAACAACCATAAAAAGTTCCGACTGAAACTTCAGTTACAAACTCCA
EY905590       <-- AAAGAAACAACCATAAAAAGTTCCGACTGAAACTTCAGTTACAAACCCCA
FD536290       <-- AAAGAAACAACCATAAAAAGTTCCGACTGAAACTTCGGTTACAAACCCCA
FD939264       <-- .AAGAAACAACCATAAAAAGTTCCGACTGAAACTTCAGTTACAAACCCCA
EX772162       <-- ...GAAACAACCATAAAAAGTTCCGACTGAAACTTCAGTTACAAACCCCA
FD974187       <-- ...GAAACAACCATAAAAAGTTCCGACTGAAACTTCAGTTACAAACCCCA
EY931261       <-- .....AACAACCATAAAAAGTTCCGACTGAAACTTCAGTTACAAACCCCA
FD986295       <-- ...ggaaaAACCATAAAAAGTTCCGACTGAAACTTCAGTTACAAACCCCA
EV538302       <-- ..................AGTTCCGACTGAAACTTCAGTTACAAACCCCA
EV547641       <-- ......................CCGACTGAAACTTCAGTTACAAACCCCA
EY933476       <-- ...................................CAGTTACAAACCCCA
EX750302       <-- ..................................................
EY899169       <-- ..................................................
EV541640       --> AAAGAAACAACCATAAAAAGTTCCGACTGAAACTTCAGTTACAAACCCCA
FD538804       --> AAAGAAACAACCATAAAAAGTTCCGACTGAAACTTCAGTTACAAACTCCA
FD531787       --> AAAGAAACAACCATAAAAAGTTCCGACTGAAACTTCGGTTACAAACCCCA
FD935427       --> .aaaAAACAACCATAAAAAGTTCCGACTGAAACTTCAGTTACAAACCCCA
FD554534       --> ......ACAACCATAAAAAGTTCCGACTGAAACTTCAGTTACAAACCCCA
FD982569       --> ...ggaaaAACCATAAAAAGTTCCGACTGAAACTTCAGTTACAAACCCCA
FD529007       --> ..................gGTTCCGACTGAAACTTCAGTTACAAACCCCA
EX753802       --> ..................................................

               101    -    151
UN20325        --> TAACACTATTTGGAACCATACATAGTCACACACGGATACAACATGTAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537407       <-- TAACACTATTTGGAACCATACATAGTCACACGGGGATACAACATGTAGAT
FD542834       <-- TAACACTATTTGGAACCATACATAGTCACACAGGGATACAACATGTAGAT
EY905590       <-- TAACACTATTTGGAACCATACATAGTCACACACGGATACAACATGTAGAT
FD536290       <-- TAACACTATTTGGAACCATACATAGTCACA--CGGATACAACATGTAGAT
FD939264       <-- TAACACTATTTGGAACCATACATAGTCACACACGGATACAACATGTAGAT
EX772162       <-- TAACACTATTTGGAACCATACATAGTCACACACGGATACAACATGTAGAT
FD974187       <-- TAACACGATTTGGAACCATACATAGTCACACACGGATACAACATGTAGAT
EY931261       <-- TAACACTATTTGGAACCATACATAGTCACACACGGATACAACATGTAGAT
FD986295       <-- TAACACTGTTTGGAACCATACATAGCCACACACGGATACAACATGTAGAT
EV538302       <-- TAGCACTATTTGGAACCATACATAGTCACACACGGATACAACATGTAGAT
EV547641       <-- TAACACTATTTGGAACCATACATAGTCACACACGGATACAACATGTAGAT
EY933476       <-- TAACACTATTTGGAACCATACATAGTCACACATGGATACAACATGTAGAT
EX750302       <-- ..................................................
EY899169       <-- ..................................................
EV541640       --> TAACACTATTTGGAACCATACATAGTCACACGGGGATACAACATGTAGAT
FD538804       --> TAACACTATTTGGAACCATACATAGTCACACAGGGATACAACATGTAGAT
FD531787       --> TAACACTATTTGGAACCATACATAGTCACAC--GGATACAACATGTAGAT
FD935427       --> TAACACTATTTGGAACCATACATAGTCACACACGGATACAACATGTAAAT
FD554534       --> TAACACTATTTGGAACCATACATAGTCACACACGGATACAACATGTAGAT
FD982569       --> TAACACTGTTTGGAACCATACATAGCCACACACGGATACAACATGTAGAT
FD529007       --> TAACACTATTTGGAACCATACATAGTCACACACGGATACAACATGTAGAT
EX753802       --> ..................................................

               151    -    201
UN20325        --> AACAA-CAGGGGTAATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537407       <-- AACAA-CAGGGGTAATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542834       <-- AACAA-CAGGGGTAATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905590       <-- AACAA-CAGGGGTAATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536290       <-- AACAA-CAGGGGTAATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus raphanistrum subsp. maritimus
FD939264       <-- AACAAACAGGGATAATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus sativus var. oleiformis
EX772162       <-- AACAA-CAGGGGTAATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus raphanistrum subsp. landra
FD974187       <-- AACAA-CAGGGGTAATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY931261       <-- AACAAACAGGGATAATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus sativus var. oleiformis
FD986295       <-- AACAA-CAGGGGTGATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus raphanistrum subsp. landra
EV538302       <-- AACAA-CAGGGGTAATAGCACCGGCCGAACAACCGGCGAAATGAGCCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547641       <-- AACAA-CAGGGGTAATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY933476       <-- AACAAACAGGGATAATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus sativus var. oleiformis
EX750302       <-- .............AATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus raphanistrum subsp. maritimus
EY899169       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV541640       --> AACAA-CAGGGGTAATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538804       --> AACAA-CAGGGGTAATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531787       --> AACAA-CAGGGGTAATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus raphanistrum subsp. maritimus
FD935427       --> AACAAACAGGGATAATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus sativus var. oleiformis
FD554534       --> AACAA-CAGGGGTAATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus raphanistrum subsp. landra
FD982569       --> AACAA-CAGGGGTGATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus raphanistrum subsp. landra
FD529007       --> AACAA-CAGGGGTAATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus raphanistrum subsp. maritimus
EX753802       --> ......ttttttTAATAGCACCGGCCAAACAACCGGCGAAATGAGCCATT  Raphanus raphanistrum subsp. maritimus

               201    -    251
UN20325        --> ATTTCATATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537407       <-- ATTTCATATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGTTTG
FD542834       <-- ATTTCATATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGTTTG
EY905590       <-- ATTTCATATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGTTTG
FD536290       <-- ATTTCATATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGCTTG
FD939264       <-- ATTTCATATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGTTTG
EX772162       <-- ATTTCATATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGTTTG
FD974187       <-- ATTTCATATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGTTTG
EY931261       <-- ATTTCGTATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGTTTG
FD986295       <-- ATTTCATATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGTTTG
EV538302       <-- ATTTCATATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGTTTG
EV547641       <-- ATTTCATATAACCAAGACATAAAATAACATTAGGTTTACTGCAGAGTTTG
EY933476       <-- ATTTCATATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGTTTG
EX750302       <-- ATTCCATATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGTTTG
EY899169       <-- ..................................................
EV541640       --> ATTTCATATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGTTTG
FD538804       --> ATTTCATATAACCAAGACATAACATAACATTAGGTTTACTGCAAAGTTTG
FD531787       --> ATTTCATATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGCTTG
FD935427       --> ATTTCATATAACCAAAACATAACATAACATTAGGTTTACTG.........
FD554534       --> ATTTCATATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGTTTG
FD982569       --> ATTTCATATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGTTTG
FD529007       --> ATTTCATATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGTTTG
EX753802       --> ATTCCATATAACCAAGACATAACATAACATTAGGTTTACTGCAGAGTTTG

               251    -    301
UN20325        --> GAGGTTGTTCATTTACAGGTGCAATTGTCGCACTTGCAGTCAGATCCGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537407       <-- GAGGTTGTTCATTTACAGGTGCAATTGTCGCACTTGCAGTCAGATCCGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542834       <-- GAGGTTGTTCATTTACAGGTGCAATTGTCGCACTTGCAGTCAGATCCGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905590       <-- GAGGTTGTTCATTTGCAGGTGCAATTGTCGCACTTGCAGTCAGATCCGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536290       <-- GAGGTTGTTCATTTACAGGTGCAGTTGTCGCACTTGCAGTCAGATCCGCA  Raphanus raphanistrum subsp. maritimus
FD939264       <-- GGGGTTGTTCATTTACAGGTGCAATTGTCGCACTTGCAGTCAGATCCGCA  Raphanus sativus var. oleiformis
EX772162       <-- GAGGTTGTTCATTTACAGGTGCAGTTGTCGCACTTGCAGTCAGATCCGCA  Raphanus raphanistrum subsp. landra
FD974187       <-- GAGGTTGTTCATTTGCAGGTGCAATTGTCGCACTTGCAGTCAGATCCGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY931261       <-- GGGGTTGTTCATTTACAGGTGCAATTGTCGCACTTGCAGTCAGATCCGCA  Raphanus sativus var. oleiformis
FD986295       <-- GAGGTTGTTCATTTACAGGTGCAGTTGTCGCACTTGCAGTCAGATCCGCA  Raphanus raphanistrum subsp. landra
EV538302       <-- GAGGTTGTTCATTTGCAGGTGCAATTGTCGCACTTGCAGTCAGATCCGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547641       <-- GAGGTTGTTCATTTACAGGTGCAATTGTCGCACTTGCAGTCAGATCCGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY933476       <-- GGGGTTGTTCATTTACAGGTGCAATTGTCGCACTTGCAGTCAGATCCGCA  Raphanus sativus var. oleiformis
EX750302       <-- GAGGTTGTTCATTTACAGGTGCAGTTGTCGCACTTGCAGTCAGATTCGCA  Raphanus raphanistrum subsp. maritimus
EY899169       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV541640       --> GAGGTTGTTCATTTACAGGTGCAATTGTCGCACTTGCAGTCAGATCCGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538804       --> GAGGTTGTTCATTTACAGGTGCAATTGTCGCACTTGCAGTCAGATCCGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531787       --> GAGGTTGTTCATTTACAGGTGCAGTTGTCGCACTTGCAGTCAGATCCGCA  Raphanus raphanistrum subsp. maritimus
FD935427       --> ..................................................  Raphanus sativus var. oleiformis
FD554534       --> GAGGTTGTTCATTTACAGGTGCAGTTGTCGCACTTGCAGTCAGATCCGCA  Raphanus raphanistrum subsp. landra
FD982569       --> GAGGTTGTTCATTTACAGGTGCAGTTGTCGCACTTGCAGTCAGATCCGCA  Raphanus raphanistrum subsp. landra
FD529007       --> GAGGTTGTTCATTTACAGGTGCAGTTGTCGCACTTGCAGTCAGATCCGCA  Raphanus raphanistrum subsp. maritimus
EX753802       --> GAGGTTGTTCATTTACAGGTGCAGTTGTCGCACTTGCAGTCAGATTCGCA  Raphanus raphanistrum subsp. maritimus

               301    -    351
UN20325        --> TTTGCAGCCATCATTCTCGGCGAAGAAAGTCTCGCCGGAAGCCTCGTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537407       <-- TTTGCAGCCATCATTCTCGGCGAAGAAAGTCTCGCCCGAAGCCTCGTACT
FD542834       <-- TTTGCAGCCATCATTCTCGGCGAAGAAAGTCTCGCCCGAAGCCTCGTACT
EY905590       <-- TTTGCAGCCATCATTCTCGGCGAAGAAAGTCTCGCCGGAAGCCTCGTACT
FD536290       <-- TTTGCAGCCATCATTCTCGGCGAAGAAAGTCTCGCCGGAAGCCTCGTACT
FD939264       <-- TTTGCAGCCATCATTCTCGGCGAAGAAAGTCTCGCCGGAAGCCTCGTACT
EX772162       <-- TTTGCAGCCATCATTCTCGGCGAAGAAAGTCTCGCCGGAAGCCTCGTACT
FD974187       <-- TTTGCAGCCATCATTCTCGGCGAAGAAAGTCTCGCCGGAAGCCTCGTACT
EY931261       <-- TTTGCAGCCATCATTCTCGGCGAAGAAAGTCTCGCCGGAAGCCTCGTACT
FD986295       <-- TTTGCAGCCATCATTCTCGGCGAAGAAAGTCTCGCCGGAAGCCTCGTACT
EV538302       <-- TTTGCAGCCATCATTCTCGGCGAAGAAAGTCTCGCCGGAAGCCTCGTACT
EV547641       <-- TTTGCAACCATCATTCTCGGCGAAGAAAGTCTCTCCCGAAGCCTCGTACT
EY933476       <-- TTTGCAGCCATCATTCTCGGCGAAGAAAGTCTCGCCGGAAGCCTCGTACT
EX750302       <-- TTTGCAGCCATCATTCTCGGCGAAGAAAGTCTCGCCGGAAGCCTCGTACT
EY899169       <-- ....................CGAAGAAAGTCTCGCCGGAAGCCTCGTACT
EV541640       --> TTTGCAGCCATCATTCTCGGCGAAAAAAGTCTCGCCCGAAGCCTCGTACT
FD538804       --> TTTGCAGCCATCATTCTCGGCGAAAAAAGTCTCGCCCGAAGCCTCGTACT
FD531787       --> TTTGCAGCCATCATTCTCGGCGAAAAAAGTCTCGCCGGAAGCCTCGTACT
FD935427       --> ..................................................
FD554534       --> TTTGCAGCCATCATTCTCGGCGAAGAAAGTCTCGCCCGAAGCCTCATACT
FD982569       --> TTTGCAGCCATCATTCTCGGCGAAAAAAGTCTCGCCGGAAGCCTCGTACT
FD529007       --> TTTGCAGCCATCATTCTCGGCGAAAAAAGTCTCGCCGGAAGCCTCGTACT
EX753802       --> TTTGCAGCCATCATTCTCGGCGAAGAAAGTCTCGCCGGAAGCCTCGTACT

               351    -    401
UN20325        --> GGGAGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537407       <-- GGGTGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
FD542834       <-- GGGTGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
EY905590       <-- GGGAGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
FD536290       <-- GGGAGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
FD939264       <-- GGGAGTTCATAGACGGAGCAACGCAGAGGATAAGAGTCTCGGTGGTGGTA
EX772162       <-- GGGAGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
FD974187       <-- GGGAGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
EY931261       <-- GGGAGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
FD986295       <-- GGGAGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
EV538302       <-- GGGAGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
EV547641       <-- GGGAGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
EY933476       <-- GGGAGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
EX750302       <-- GGGAGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
EY899169       <-- GGGAGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
EV541640       --> GGGTGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
FD538804       --> GGGTGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
FD531787       --> GGGAGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
FD935427       --> ..................................................
FD554534       --> GAGAGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
FD982569       --> GGGAGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGGGGTA
FD529007       --> GGGAGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA
EX753802       --> GGGAGTTCATAGACGGAGCAACGCCGAGGATAAGAGTCTCGGTGGTGGTA

               401    -    451
UN20325        --> GTCTCGCCTGAGAAGCCCAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537407       <-- GTCTCGCCTGAGAAGCCCAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
FD542834       <-- GTCTCGCCTGAGAAGCCCAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
EY905590       <-- GTCTCGCCTGAGAAGCCAAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
FD536290       <-- GTCTCGCCTGAGAAGCCCAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
FD939264       <-- GTCTCGCCTGAGAAGCCCAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
EX772162       <-- GTCTCGCCTGAGAAGCCCAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
FD974187       <-- GTCTCGCCTGAGAAGCCAAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
EY931261       <-- GTCTCGCCTGAGAAGCCCAAGTCTGGGTACATTT-GCAACCTTTGCAGCC
FD986295       <-- GTCTCGCCTGAGAAGCCCAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
EV538302       <-- GTCCCGCCTGAGAAGCCAAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
EV547641       <-- GTCTCGCCTGAGAAGCCAAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
EY933476       <-- GTCTCGCCTGAGAAGCCCAAGTCTGGGTGCATTTTGCAACCTTTGCAGCC
EX750302       <-- GTCTCGCCTGAGAAGCCCAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
EY899169       <-- GTCTCGCCTGAGAAGCCCAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
EV541640       --> GTCTCGCCTGAGAAGCCCAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
FD538804       --> GTCTCGCCTGAAAAGCCCAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
FD531787       --> GTCTCGCCTGAAAAGCCCAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
FD935427       --> ..................................................
FD554534       --> GTCTCGCCTGAGAAGCCCAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
FD982569       --> GTCTCGCCTGAGAAGCCCAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
FD529007       --> GTCTCGCCTGAGAAGCCCAAGTCTGGGTACATTTTGCAACCTTTGCAGCC
EX753802       --> GTCTCGCCTGAGAAGCCCAAGTCTGGGTACATTTTGCAACCTTTGCAGCC

               451    -    501
UN20325        --> ATCGCACTTGCAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537407       <-- ATCGCACTTGCAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
FD542834       <-- ATCGCACTTGCAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
EY905590       <-- ATCGCACTTGCAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
FD536290       <-- ATCGCACTTGCAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
FD939264       <-- ATCGCACTTGCAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
EX772162       <-- ATCGCACTTGCAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
FD974187       <-- ATCGCACTTACAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
EY931261       <-- ATCGCACTTGCAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
FD986295       <-- ATCGCACTTGCAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
EV538302       <-- ATCGCACTTGCAGTCAGATCCGCGGCTACAGTTTCCTCCACAGCAAGACA
EV547641       <-- ATCGCACTTGCAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
EY933476       <-- ATCGCACTTGCAGTCAGATACGCAGCTACAGTTTCCTCCACAGCAAGACA
EX750302       <-- ATCGCACTTGCAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
EY899169       <-- ATCGCACTTGCAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
EV541640       --> ATCGCACTTGCAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
FD538804       --> ATCGCACTTGCAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
FD531787       --> ATCGCACTTGCAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
FD935427       --> ..................................................
FD554534       --> ATCGCACTTGTAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
FD982569       --> ATCGCACTTGCAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
FD529007       --> ATCGCACTTGCAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA
EX753802       --> ATCGCACTTGCAGTCAGATCCGCAGCTACAGTTTCCTCCACAGCAAGACA

               501    -    551
UN20325        --> TCGTCTCT-AAGAAACTTTGAAGAAATCTAAAATGTTAATTTTGCTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537407       <-- TCTTCTCTTTAGAAACTTTGAAGAAATCTAAAATGTTAATTTGGCTTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542834       <-- TCTTCTCTTTAGAAACTTTGAAGAAATCTAAAATGTTAATTTGGCTTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905590       <-- TCGTCTCT-AAGAAACTTTGAAGAAATCTAAAATGTTAATTTTGCTTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536290       <-- TCGTCTCT-AAGAAACTTTGAAGAAATCTAAAATGTTAATTTTGCTTTGA  Raphanus raphanistrum subsp. maritimus
FD939264       <-- TCGTTTCT-AAGAAACTTTGAAGAAATCTAAAATGTTAATTTTGCTTTGA  Raphanus sativus var. oleiformis
EX772162       <-- TCGTCTCT-AAGAAACTTTGAAGAAATCTAAAATGTTAATTTTGCTTTGA  Raphanus raphanistrum subsp. landra
FD974187       <-- TCGTCTCT-AAGAAACTTTGAAGAAATCTAAAATGTTAATTTTGCTTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY931261       <-- TCGTTTCT-AAGAAACTTTGAAGAAATCTAAAATGTTAATTTTGCTTTGc  Raphanus sativus var. oleiformis
FD986295       <-- TCGTCTCT-AAGAAACTTTGAAGAAATCTAAAATGTTAATTTTGCTTTGA  Raphanus raphanistrum subsp. landra
EV538302       <-- TCGTCTCT-AAGAAACTTTGAAGAAATCTAAAATGTTAATTTTGCTTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547641       <-- TCTTCTCTTTAGAAACTTTGAAGAAATCTAAAATGTTAATTTGGCTTTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY933476       <-- TCGTTTCT-AAGAAACTTTGAAGAAATCTAAAATGTTAATTTTGCTTTGA  Raphanus sativus var. oleiformis
EX750302       <-- TCGTCTCT-AAGAAACTTTGAAGAAATCTAAAATGTTAATTTTGCTTTGA  Raphanus raphanistrum subsp. maritimus
EY899169       <-- TCGTTTCT-AAGAAAC..................................  Raphanus raphanistrum subsp. maritimus
EV541640       --> TCTTCTCTTTAGAAACTTTGAAGAAATCTAAAATGTTAATTTGGCTTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538804       --> TCTTCTCTTTAGAAACTTTGAAGAAATCTAAAATGTTAATTTGGCTTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531787       --> TCGTCTCT-AAGAAACTTTGAAGAAATCTAAAATGTTAATTTTGCTTTGA  Raphanus raphanistrum subsp. maritimus
FD935427       --> ..................................................  Raphanus sativus var. oleiformis
FD554534       --> TCGTTTCT-AAGAAACTTTGAAGAAATCTAAAATGTTAATTTTGCTTTGA  Raphanus raphanistrum subsp. landra
FD982569       --> TCGTCTCT-AAGAAACTTTGAAGAAATCTAAAATGTTAATTTTGCTTTGA  Raphanus raphanistrum subsp. landra
FD529007       --> TCGTCTCT-AAGAAACTTTGAAGAAATCTAAAATGTTAATTTTGCTTTGA  Raphanus raphanistrum subsp. maritimus
EX753802       --> TCGTCTCT-AAGAAACTTTGAAGAAATCTAAAATGTTAATTTTGCTTTGA  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN20325        --> GAGAGAGATACTG......
                   ~~~~~~~~~~~~~~~~~~~
EV537407       <-- GAGAGAGATACTGagatcc
FD542834       <-- GAGAGAGATACTcc.....
EY905590       <-- GAGAGAGATACTcc.....
FD536290       <-- GAGAGAGATACTGcc....
FD939264       <-- GAGAGAGATcc........
EX772162       <-- GAGAGAGATACTGagatcc
FD974187       <-- GAGAGAGATACTGagatcc
EY931261       <-- c..................
FD986295       <-- GAGAGAGATACTcc.....
EV538302       <-- GAGAGAGATcc........
EV547641       <-- GAGAGAGATcc........
EY933476       <-- GAGAGAGATcc........
EX750302       <-- GAGA...............
EY899169       <-- ...................
EV541640       --> GAGAGAGATACTGagatcc
FD538804       --> GAGAGAGATACTcc.....
FD531787       --> GAGAGAGATACTGcc....
FD935427       --> ...................
FD554534       --> GAGAGAGATACTGagatcc
FD982569       --> GAGAGAGATACTcc.....
FD529007       --> GAGAGAGATACTGcc....
EX753802       --> GAGAGAGATcc........