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Alignment for radish unigene UN20386

               1      -     51
UN20386        --> ACAGAAAGTGTCAAAAGAATAGATAGTCCATCATCGTATAGTCATTATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ACAGAAAGTGTCAAAAGAATAGATAGTCCATCATCGTATAGTCATTATTA
FD562849       <-- ..................................................
FD941759       <-- ..................................................
EV548915       <-- ..................................................
EY921258       <-- ..................................................
EV530669       --> ACAGAAAGTGTCAAAAGAATAGATAGTCCATCATCGTATAGTCATTATTA
EV544499       --> ACAGAAAGTGTCAAAAGAATAGACAGTCCATCATCGTATAGTCATTATTA
EY917446       --> ACAGAAAGTGTCAAAAGAATAGATAGTCCATCATCGTATAGTCATTATTA
EX893588       --> ............................CATCATCGTATAGTCATTATTA

               51     -    101
UN20386        --> CAGACAGAGACGGAACACGAGCAGGCACAGAATGTAAGTTTAACTTCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- CAGACAGAGACGGAACACGAGCAGGCACAAAATGTAAGTTTAACTTCTAG
FD562849       <-- ..................................................
FD941759       <-- ..................................................
EV548915       <-- ..................................................
EY921258       <-- ..................................................
EV530669       --> CAGACAGAGACGGAACACGAGCAGGCACAGAATGTAAGTTTAACTTCTAA
EV544499       --> CAGACAGAGACGGAACACGAGCAGGCACAGAATGTAAGTTTAACTTCTAG
EY917446       --> CAGACAGAGACGGAACACGAGCAGGCACAGAATGTAAGTTTAACTTCTAG
EX893588       --> CAGACCGAGACGGAACACGAGCAGGCAAAAAATGTAAGTTTAACTTCTAG

               101    -    151
UN20386        --> ATTCTATTGATCTCTCTCTCTCTACATAGAATCAAGAACGCTTCCGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ATTCTATTGATCTCTCTCTC--TACATAGAATCAAGAACGCTTCCGAGAA
FD562849       <-- ..................................................
FD941759       <-- ..................................................
EV548915       <-- ..................................................
EY921258       <-- ..................................................
EV530669       --> ATTCTATTGATCTCTCTCTCTCTACATAAAATCAAGAACGCTTCCGAAAA
EV544499       --> ATTCTATTGATCTCTCTCTCTCTACATAGAATCAAGAACGCTTCCGAGAA
EY917446       --> ATTCTATTGATCTCTCTCTCTCTACATAGAATCAAGAACGCTTCCGAGAA
EX893588       --> ATTCTATTGATCTCTCTCTCT--ACATAGAATCAAGAACGCTTCCGAGAA

               151    -    201
UN20386        --> TTGCACAAAAACAAAATATTAAAAGAGAATAAAAAACCCTTTTTAACGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- TTGCACAAAAACAAAATATTAAAAGAGAATAAAAAACCCTTTTTAACGGG
FD562849       <-- .......................................TTTTTAACGGG
FD941759       <-- ..................................................
EV548915       <-- ..................................................
EY921258       <-- ..................................................
EV530669       --> TTGCACAAAAACAAAATATTAAAAGAAAATAAAAAACCCTTTTTAACGGG
EV544499       --> TTGCACAAAAACAAAATATTAAAAGAGAATAAAAAACCCTTTTTAACGGG
EY917446       --> TTGCACAAAAACAAAATATTAAAAGAGAATAAAAAACCCTTTTTAACGGG
EX893588       --> TTGCACAAAAACAAAGTATTAAAAGAGAATAAAAAACCCTTTTTAACGGG

               201    -    251
UN20386        --> CTTTTATGTATCAGTAGCAGCAGTAGTAGAACACTCTGGTTTGCTGAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- CTTTTACGTATCAGTAGCAGCAGTAGTAGAACACTCTGGTTTGCTGAGTT
FD562849       <-- CTTT-ATGTATCAGTAGCAGCAGTAGTAGAACACTCTGGTTTGCTGAGT-
FD941759       <-- ..................................................
EV548915       <-- ..................................................
EY921258       <-- ..................................................
EV530669       --> CTTTTATGTATCAGTAGCAGCAGTAGTAAAACACTCTGGTTTGCTGAGTT
EV544499       --> CTTTTATGTATCAGTAGCAGCAGTAGTAGAACACTCTGGTTTGCTGAGTT
EY917446       --> CTTTTATGTATCAGTAGCAGCAGTAGTAGAACACTCTGGTTTGCTGAGTT
EX893588       --> CTTTTATGTATCAGTAGCAGCAGTAGTAGAACACTCTGGTTTGCTGAGTT

               251    -    301
UN20386        --> CATCACCCAACATGTGATGAAGAAGTGTGTCAACTCTTTGACTCCTAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- CATCACCCAACATGTGATGAAGAAGTGTGTCAACTCTTTGACTCCTAGAC
FD562849       <-- CATCACCCAACATGTGATGAAGAAGTGTGTCAACTCTTTGACTC-TAGAC
FD941759       <-- ..................................................
EV548915       <-- ..................................................
EY921258       <-- ..................................................
EV530669       --> CATCCCCCAACATGGGATGAAGAAG.........................
EV544499       --> CATCACCCAACATGTGATGAAGAAGTGTGTCAACTCTTTGACTCCTAGAC
EY917446       --> CATCACCCAACATGTGATGAAGAAGTGTGTCAACTCTTTGACTCCTAGAC
EX893588       --> CATCACCCAACATGTGATGAAGAAGTGTGTCAACTCTTTGACTCCTAGAC

               301    -    351
UN20386        --> TTCGACCCTGCAGATCGACGCCGGTTTCTTCTTTCTTGAGAATCCTGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- TTCGACCCTGCAGATCGACGCCGGTTTCTTCTTTCTTGAGAATCCTGTCC
FD562849       <-- TTCGGCCCTGCAGATCGACGCCGGTTTCTTCTTTCTTGAGAATCCTGTCC
FD941759       <-- ..................................................
EV548915       <-- ..................................................
EY921258       <-- ..................................................
EV530669       --> ..................................................
EV544499       --> TTCGACCCTGCAGATCGACGCCGGTTTCTTCTTTCTTGAGAATCCTGTCC
EY917446       --> TTCGACCCTGCAGATCGACGCCGGTTTCTTCTTTCTTGAGAATCCTGTCC
EX893588       --> TTCGACCCTGCAGATCGACGCCGGTTTCTTCTTTCTTGAGAATCCTGTCC

               351    -    401
UN20386        --> TTGACATTTCTCCTCTTCCTCCAGATCCAACTCAGTAAAGAAAGCCTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- TTGACATTTCTCCTCTTCCTCCAGATCCAACTCAGTAAAGAAAGCCTCCA
FD562849       <-- TTGACATTTCTCCTCTTCCTCCAGATCCAACTCAGTAAAGAAAGCCTCCA
FD941759       <-- ......................AGATCCAACTCAGTAAAGAAAGCCTCCA
EV548915       <-- ..................................................
EY921258       <-- ..................................................
EV530669       --> ..................................................
EV544499       --> TTGACATTTCTCCTCTTCCTCCAGATCCAACTCAGTAAAGAAAGCCTCCA
EY917446       --> TTGACATTTCTCCTCTTCCTCCAGATCCAACTCAGTAAAGAAAGCCTCCA
EX893588       --> TTGACATTTCTCCTCTTCCTCCAGATCCAACTCAGTAAAGAAAGCCTCCA

               401    -    451
UN20386        --> AGACAAAGGCAACAACCAAGTTCAACAGAAGTAAAACAGTGATGATGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- AGACAAAGGCAACAACCAAGTTCAACAGAAGTAAAACAGTGATGATGTAG
FD562849       <-- AGACAAAGGCAACAACCAAGTTCAACAGAAGTAAAACAGTGATGGTGTAG
FD941759       <-- AGACAAAGGCAACAACCAAGTTCAACAGAAGTAAAACAGTGATGGTGTAG
EV548915       <-- .....................................AGTGATGATGTAG
EY921258       <-- ..................................................
EV530669       --> ..................................................
EV544499       --> AGACAAAGGCAACAACCAAGTTCAACAGAAGTAAAACAGTGATGATGTAG
EY917446       --> AGACAAAGGCAACAACCAAGTTCAACAGAAGTAAAACAGTGATGATGTAG
EX893588       --> AGACAAAGGCAACAACCAAGTTCAACAGAAGTAAAACAGTGATGATGTAG

               451    -    501
UN20386        --> AAACTGACGAAATACGTAATGCTCCACCATGTCCCCGTCAAATCTTTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- AAACTGACGAAATACGTAATGCTCCACCc.....................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD562849       <-- AAACTGACGAAATACGTAATGCTCCACCATGTCCCCGTCAAATCTTTATA  Raphanus sativus var. oleiformis
FD941759       <-- AAACTGACGAAATACGTAATGCTCCACCATGTCCCCGTCAAATCTTTATA  Raphanus sativus var. oleiformis
EV548915       <-- AAACTGACGAAATACGTAATGCTCCACCAAGTCCCCGTCAAATCTTTATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921258       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV530669       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV544499       --> AAACTGACGAAATACGTAATGCTCCACCAAGTCCCCGTCAAATCTTTATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917446       --> AAACTGACGAAATACGTAATGCTCCACCAAGTCCCCGTCAAATCTTTATA  Raphanus raphanistrum subsp. landra
EX893588       --> AAACTGACGAAATACGTAATGCTCCACCATGTCCCCGTCAAATCTTTATA  Raphanus sativus var. oleiformis

               501    -    551
UN20386        --> GCTCTCCATCCAGACTTGCCAGTTCCCCATCACTAGCAGATTGAAGAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- GCTCTCCATCCAGACTTGCCAGTTCCCCATCACTAGCAGATTGAAGAGTG
FD941759       <-- GCTCTCCATCCAGACTTGCCAGTTCCCCATCACTAGCAGATTGAAGAGTG
EV548915       <-- GCTCTCCATCCAGACTTGCCAGTTACCCATCACTAGCAGATTGAAGAGTG
EY921258       <-- ..................................................
EV530669       --> ..................................................
EV544499       --> GCTCTCCATCCAGACTTGCCAGTTACCCATCACTAGCAGATTGAAGAGTG
EY917446       --> GCTCTCCATCCAGACTTGCCAGTTCCCCATCACTAGCAGATTGAAGAGTG
EX893588       --> GCTCTCCATCCAGACTTGCCAGTTCCCCATCACTAGCAGATTGAAGAGTG

               551    -    601
UN20386        --> TGACCATTCCATTGGGATAGTCATTGAAGTTGAACAGTAGATAGTCATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- TGACCATTCCATTGGGATAGTCATTGAAGTTGAACAGTAGATAGTCATCC
FD941759       <-- TGACCATTCCATTGGGATAGTCATTGAAGTTGAACAGTAGATAGTCATCC
EV548915       <-- TGACCATTCCATTGGGATAGTCATTGAAGTTGAACAGTAGATAGTCATC-
EY921258       <-- ..................................................
EV530669       --> ..................................................
EV544499       --> TGACCATTCCATTGGGATAGTCATTGAAGTTGAACAGTAGATAGTCATCC
EY917446       --> TGACCATTCCATTGGGATAGTCATTGAAGTTGAACAGTAGATAGTCATCC
EX893588       --> TGACCATTCCATTGGGATAGTCATTGAAGTTGAAC...............

               601    -    651
UN20386        --> TCAGCCATCTCAGTTTTGAAGAGTTGTTTGTTCCCAGCATTCACAAGCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- TCAGCCATCTCAGTTTTGAAGAGTTGTTTGTTCC-AGCATTCACAAGCCC
FD941759       <-- TCAGCCATCTCAGTTTTGAAGAGTTGTTTGTTCC-AGCATTCACAAGCCC
EV548915       <-- TCAGCCATCTCAGTTTTGAAGAGTTGTTTGTTCCCAGCATTCACAAGCCC
EY921258       <-- ..................................................
EV530669       --> ..................................................
EV544499       --> TCAGCCATCTCAGTTTTGAAGAGTTGTTTGTTCCCAGCATTCACAAGCCC
EY917446       --> TCAGCCATCTCAGTTTTGAAGAGTTGTTTGTTCCCAGCATTCACAAGCCC
EX893588       --> ..................................................

               651    -    701
UN20386        --> ACCAAAGATCTGTACACCAATAGAGCAGTAGATACACAGCACGCAGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- ACCAAAGACCTGCACACCAATAGAGCAGTAGATACACAGCACGCAGAAGA
FD941759       <-- ACCAAAGACCTGCACACCAATAGAGCAGTAGATACACAGCACGCAGAAGA
EV548915       <-- ACCAAAGATCTGTACACCAATAGAGCAGTAGATACGCAGCACGCAGAAGA
EY921258       <-- ..................................................
EV530669       --> ..................................................
EV544499       --> ACCAAAGATCTGTACACCAATAGAGCAGTAGATACGCAGCACGCAGAAGA
EY917446       --> ACCAAAGATCTGTACACCAATAGAGCAGTAGATACACAGCACGCAGAAGA
EX893588       --> ..................................................

               701    -    751
UN20386        --> TGGTCCCTAAATATGGCATCAAACTTGGAATAAGAGTGATGAATGTCGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- TGGTCCCTAAATATGGCATCAAACTTGGAATAAGAGTGATGAATGTCGCA
FD941759       <-- TGGTCCCTAAATATGGCATCAAACTTGGAATAAGAGTGATGAATGTCGCA
EV548915       <-- TGGTCCCTAAATATGGCATCAAACTTGGAATAAGAGTGATGAATGTCGCA
EY921258       <-- ..................................................
EV530669       --> ..................................................
EV544499       --> TGGTCCCTAAATATGGCATCAAACTTGGAATAAGAGTGATGAATGTCGCA
EY917446       --> TGGTCC............................................
EX893588       --> ..................................................

               751    -    801
UN20386        --> ATAAATGCTCGGTATCTCTGGACGTGCATAAGAAGCCTTATCAGTCTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- ATAAATGCTCGGTATCTCTGGACGTGCATAAGAAGCCTTATCAGTCTTAA
FD941759       <-- ATAAATGCTCGGTATCTCTGGACGTGCATAAGAAGCCTTATCAGTCTTAA
EV548915       <-- ATAAATGCTCGGTATCTCTGGACGTGCATAAGAAGCCTTATCAGTCTTAA
EY921258       <-- ..................................................
EV530669       --> ..................................................
EV544499       --> ATAAATGCTCGGTATCTCTGGACGTGCATAAGAAGCCTTATCAGTCTTAA
EY917446       --> ..................................................
EX893588       --> ..................................................

               801    -    851
UN20386        --> CATTCTTGCAAGGAGAAGGTATCGGATCCATTCTCCGTTTGAGAAGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- CATTCTTGCAAGGAGAAGGTATCGGATCCATTCTCCGTTTGAGAAGAGAG
FD941759       <-- CATTCTTGCAAGGAGAAGGTATCGGATCCATTCTCCGTTTGAGAAGAGAG
EV548915       <-- CATTCTTGCAAGGAGAAGGTATCGGATCCATTCTCCGTTTGAGAAGAAAG
EY921258       <-- ..................................................
EV530669       --> ..................................................
EV544499       --> CATTCTTGCAAGGAGAAGGTATCGGATCCATTCTCCGTTTGAGAAGAAAG
EY917446       --> ..................................................
EX893588       --> ..................................................

               851    -    901
UN20386        --> TGTTCTCGTCTGGAGTTATGAAGGTAGCTGTTTCCCCAATAACTATGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- TGTTCTCGTCTGGAGTTATGAAGGTAGCTGTTTCCCCAATAACTATGACC
FD941759       <-- TGTTCTCGTCTGGAGTTATGAAGGTAGCTGTTTCCCCAATAACTATGACC
EV548915       <-- TGTTCTCATCTGGAGTTATGAAGGTAGCTGTTTCACCAATAACTATGACC
EY921258       <-- ..................................................
EV530669       --> ..................................................
EV544499       --> TGTTCTCATCTGGAGTTATG..............................
EY917446       --> ..................................................
EX893588       --> ..................................................

               901    -    951
UN20386        --> CATGTGACTATAAAATCAAACCGGTTTTGACCATCCCTCCAGTAATTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- CATGTGACTATAAAATCAAACCGGTTTTGACCATCCCTCCAGTAATTCTC
FD941759       <-- CATGTGACTATAAAATCAAACCGGTTTTGACCATCCCTCCAGTAATTCTC
EV548915       <-- CATGTGACTATAAAATCAAACCGGTTTTGGCCATCCCTCCAATAATTCTC
EY921258       <-- .................................TCCCTCCAATAATTCTC
EV530669       --> ..................................................
EV544499       --> ..................................................
EY917446       --> ..................................................
EX893588       --> ..................................................

               951    -   1001
UN20386        --> GAATCCATATGAATAGATCTTCAAAGCCATCTCCAACACATATATCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- GAATCCATATGAATAGATCTc.............................
FD941759       <-- GAATCCATATGAATAGATCTc.............................
EV548915       <-- AAATCCATATGAATAGATCTTCAAAGCCATCTCCAACACATATATCCATC
EY921258       <-- -AATCCATATGAATAGATCTTCAAAGCCATCTCCAACACATATATCCATC
EV530669       --> ..................................................
EV544499       --> ..................................................
EY917446       --> ..................................................
EX893588       --> ..................................................

               1001   -   1051
UN20386        --> CAAAGACAAACTCGGCAACCTGCCAGGGCTTCTGAGCGGAGCTTTCTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- ..................................................
FD941759       <-- ..................................................
EV548915       <-- CAAAGACAAACTCGGCAACCTGCCAGGGCTTCTGAGCGGAGCTTTCTTCA
EY921258       <-- CAAAGACAAACTCGGCAAC-TGCCAGGGCTTCTGAGCGGAGCTTTCTTCA
EV530669       --> ..................................................
EV544499       --> ..................................................
EY917446       --> ..................................................
EX893588       --> ..................................................

               1051   -   1101
UN20386        --> ATATCAAGCGTAGTTTCAACAACGACAGCAATGAAGTTCACAACGAGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- ..................................................
FD941759       <-- ..................................................
EV548915       <-- ATATCAAGCGTAGTTTCAACAACGACAGCAATGAAGTTCACAACGAGGAT
EY921258       <-- ATATCAAGCGTAGTTTCAACAACGACAGCAATGAAGTTCACAACGAGGAT
EV530669       --> ..................................................
EV544499       --> ..................................................
EY917446       --> ..................................................
EX893588       --> ..................................................

               1101   -   1151
UN20386        --> GAAAGAAATAGTATATCCAAAGTTTGGGCTTCGAACAAAGGCTCTCAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- ..................................................
FD941759       <-- ..................................................
EV548915       <-- GAAAGAAATAGTATATCCAAAGTTTGGGCTTCGAACAAAGGCTCTCAGTT
EY921258       <-- GAAAGAAATAGTATATCCAAAGTTTGGGCTTCGAACAAAGGCTCTCAGTT
EV530669       --> ..................................................
EV544499       --> ..................................................
EY917446       --> ..................................................
EX893588       --> ..................................................

               1151   -   1201
UN20386        --> GTTGTGATAAGGCCGAATGGTAAATTTGCGGTAAGTTCTCAAAGAGAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- ..................................................
FD941759       <-- ..................................................
EV548915       <-- GTTGTGATAAGGCCGAATGGTAAATTTGCGGTAAGTTCTCAAAGAGAGAT
EY921258       <-- GTTGTGATAAGGCCGAATGGTAAATTTGCGGTAAGTTCTCAAAGAGAGAT
EV530669       --> ..................................................
EV544499       --> ..................................................
EY917446       --> ..................................................
EX893588       --> ..................................................

               1201   -   1251
UN20386        --> GGAACTTCCTCCTTTTGAAATCTAAGAGCAATGGCTTGGCAGAGGTCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- ..................................................
FD941759       <-- ..................................................
EV548915       <-- GGAACTTCCTCCTTTTGAAATCTAAGAGCAATGGCTTGGCAGAGGTCAGC
EY921258       <-- GGAACTTCCTCATTTTGAAATCTAAGAGCAATGGCTTGGCAGAGGTCAGC
EV530669       --> ..................................................
EV544499       --> ..................................................
EY917446       --> ..................................................
EX893588       --> ..................................................

               1251   -   1301
UN20386        --> AAACTCATCCTTGTTGATCTTGAAGTCACGAGTATCATCAAGCTCATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- ..................................................
FD941759       <-- ..................................................
EV548915       <-- AAACTCATCCTTGTTGATCTTGAAGTCACGAGTATCATCAAGCTCATCc.
EY921258       <-- AAACTCATCCTTGTTGATCTTGAAGTCACGAGTATCATCAAGCTCATCAA
EV530669       --> ..................................................
EV544499       --> ..................................................
EY917446       --> ..................................................
EX893588       --> ..................................................

               1301   -   1351
UN20386        --> ATATCAATCCGAATTCTTCTTTTGATATCTTTGGCAACGTCCTGTAATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- ..................................................
FD941759       <-- ..................................................
EV548915       <-- ..................................................
EY921258       <-- ATATCAATCCGAATTCTTCTTTTGATATCTTTGGCAACGTCCTGTAATTA
EV530669       --> ..................................................
EV544499       --> ..................................................
EY917446       --> ..................................................
EX893588       --> ..................................................

               1351   -   1401
UN20386        --> GTCAACTGTTCAAAGAGCTTAATGCATTGCTCCTTATCAATCTGCCCGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- ..................................................
FD941759       <-- ..................................................
EV548915       <-- ..................................................
EY921258       <-- GTCAACTGTTCAAAGAGCTTAATGCATTGCTCCTTATCAATCTGCCCGGT
EV530669       --> ..................................................
EV544499       --> ..................................................
EY917446       --> ..................................................
EX893588       --> ..................................................

               1401   -   1451
UN20386        --> TTTGTCTTTGTCTATAAGACCAAAGGCTTTCTCCAGCATTCTTCTCTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- ..................................................
FD941759       <-- ..................................................
EV548915       <-- ..................................................
EY921258       <-- TTTGTCTTTGTCTATAAGACCAAAGGCTTTCTCCAGCATTCTTCTCTTCA
EV530669       --> ..................................................
EV544499       --> ..................................................
EY917446       --> ..................................................
EX893588       --> ..................................................

               1451   -   1501
UN20386        --> TTTGATCCATTCCAGATACTTGCTTTGCGAGCTGTTCTTTGAAACTGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- ..................................................
FD941759       <-- ..................................................
EV548915       <-- ..................................................
EY921258       <-- TTTGATCCATTCCAGATACTTGCTTTGCGAGCTGTTCTTTGAAACTGTCA
EV530669       --> ..................................................
EV544499       --> ..................................................
EY917446       --> ..................................................
EX893588       --> ..................................................

               1501   -   1551
UN20386        --> TAAACAACGGCAAGAATCAAGTTGGTGACAAAGTAGACGCCTATTAGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- ..................................................
FD941759       <-- ..................................................
EV548915       <-- ..................................................
EY921258       <-- TAAACAACGGCAAGAATCAAGTTGGTGACAAAGTAGACGCCTATTAGCAC
EV530669       --> ..................................................
EV544499       --> ..................................................
EY917446       --> ..................................................
EX893588       --> ..................................................

               1551   -   1601
UN20386        --> GTAGAGCACGAAGAACAACGAAGACCAGCGTGAAGACTTGTAAGCGCGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- ..................................................
FD562849       <-- ..................................................
FD941759       <-- ..................................................
EV548915       <-- ..................................................
EY921258       <-- GTAGAGCACGAAGAACAACGAAGACCAGCGTGAAGACTTGTAAGCGCGGA
EV530669       --> ..................................................
EV544499       --> ..................................................
EY917446       --> ..................................................
EX893588       --> ..................................................

               1601   -   1651
UN20386        --> TCCAGACATCAGGATTGTTGGATGTTGTGAACAAAATAAACATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535202       <-- .............................................
FD562849       <-- .............................................
FD941759       <-- .............................................
EV548915       <-- .............................................
EY921258       <-- TCCAGACATCAGGATTGTTGGATGTTGTGAACAAAATAAACATCC
EV530669       --> .............................................
EV544499       --> .............................................
EY917446       --> .............................................
EX893588       --> .............................................