1      -     51
UN20396        --> AGCAATAGAGCTACCATTGTAAGTGTTGAGAGAGTTATTATAAAGACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548857       <-- AGCAATAGAGCTACCATTGTAAGTGTTGAGAGAGTTATTATAAAGACAAT
FD532558       <-- ...........................GAGTGAGTTATTATAAAGACAAT
FD561824       <-- ..................................................
FD988009       <-- ..................................................
EV527753       <-- ..................................................
FD552146       <-- ..................................................
FD962193       <-- ..................................................
FD532656       <-- ..................................................
FD565875       --> ..................................................
EV531923       --> ..................................................
FD958787       --> ..................................................

               51     -    101
UN20396        --> AAACGTGACTTTGACGACTCCCAATACATATCGAAAGGGCTCTTTAATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548857       <-- AAACGTGACTTTGACGACTCCCAATACATATCGAAAGGGCTCTTTAATAT
FD532558       <-- AAACGTGACTTTGACGACTCCCAATACATATCGAAAGGGCTCTTTAATAT
FD561824       <-- ..........................CATATCGAAAGGGCTCTTTAATAT
FD988009       <-- ...........................ATATCGAAAGGGCTCTTTAATAT
EV527753       <-- ...............................CGAAAGGGCTCTTTAATAT
FD552146       <-- ................................GAAAGGGCTCTTTAATAT
FD962193       <-- ..................................................
FD532656       <-- ..................................................
FD565875       --> ............ggCGACTCCCAATACATATCGAAAGGGCTCTTTAATAT
EV531923       --> ...............................CGAAAGGGCTCTTTAATAT
FD958787       --> ..................................................

               101    -    151
UN20396        --> TGTGATTTGTCAACAGAGAGAGGTAACCAGTCATATTGGCCTAGGAAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548857       <-- TGTGATTTGTCAACAGAGAGAGGTAACCAGTCATATTGGCCTAGGAAATT
FD532558       <-- TGTGATTTGTCAACAGAGAGAGGTAACCAGTCATATTGGCCTAGGAAATT
FD561824       <-- TGTGATTTGTCAACAGAGAGAGGTAACCAGTCATATTGGCCTAGGAAATT
FD988009       <-- TGTGATTTGTCAACAGAGAGAGGTAACCAGTCATATTGGCCTAGGAAATT
EV527753       <-- TGTGATTTGTCAACAGAGAGAGGTAACCAGCCATATTGGCCTAGGAAATT
FD552146       <-- TGTGATTTGTCAACAGAGAGAGGTAACCAGTCATATTGGCCTAGGAAATT
FD962193       <-- .......................................CCTAGGAAATT
FD532656       <-- ..................................................
FD565875       --> TGTGATTTGTCAACAGAGAGAGGTAACCAGTCATATTGGCCTAGGAAATT
EV531923       --> TGTGATTTGTCAACAGAGAGAGGTAACCAGCCATATTGGCCTAGGAAATT
FD958787       --> .....................................GGCCTAGGAAATT

               151    -    201
UN20396        --> ATTTATGAATAGTAGTAATCATCATATCTCTTGATACACATGACATTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548857       <-- ATTTATGAATAGTAGTAATCATCATATCTCTTGATACACATGACAATAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532558       <-- ATTTATGAATAGTAGTAATCATCATATCTCTTGATACACATGACATTAAT  Raphanus raphanistrum subsp. maritimus
FD561824       <-- ATTTATGAATAGTAGTAATCATCATATCTCTTGATACACATGACAATAAT  Raphanus sativus var. oleiformis
FD988009       <-- ATTTATGAATAGTAGTAATCATCATATCTCTTGATACACATGACATTAAT  Raphanus raphanistrum subsp. landra
EV527753       <-- ATTTATGAATAGTAGTAATCATCATATCTCTTGATACACATGACATTAAT  Raphanus raphanistrum subsp. maritimus
FD552146       <-- ATTTATGAATAGTAGTAATCATCATATCCCTTGATACACATGACAATAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962193       <-- ATTTATGAATAGTAGTAATCATCATATCTCTTGATACACATGACATTAAT  Raphanus raphanistrum subsp. maritimus
FD532656       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD565875       --> ATTTATGAATAGTAGTAATCATCATATCTCTTGATACACATGACAATAAT  Raphanus sativus var. oleiformis
EV531923       --> ATTTATGAATAGTAGTAATCATCATATCTCTTGATACACATGACATTAAT  Raphanus raphanistrum subsp. maritimus
FD958787       --> ATTTATGAATAGTAGTAATCATCATATCTCTTGATACACATGACATTAAT  Raphanus raphanistrum subsp. maritimus

               201    -    251
UN20396        --> GTGGAGATCAATTTAAGGTTTCGAATGGTTCAGTAGGGCCTTCTTAGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548857       <-- GTGGAGATCAATTTAAGGTTTCGAATGGTTCAGTAGGGCCTTCTTAGGTG
FD532558       <-- GTGGAGATCAATTTAAGGTTTCGAATGGTTCAGTAGGGCCTTCTTAGGTG
FD561824       <-- GTGGAGATCAATTTAAGGTTTCGAATGGTTCAGTAGGGCCTTCTTAGGTG
FD988009       <-- GTGGAGATCAATTTAAGGTTTCGAATGGTTCAGTAGGGCCTTCTTAGGTG
EV527753       <-- GTGGAGATCAATTTAAGGCTTCGAATGGTTCAGTAGGGCCTTCTTAGGTG
FD552146       <-- GTGGAGATCAATTTAAGGTTTCGAATGGTTCAGTAGGGCCTTCTTAGGTG
FD962193       <-- GTGGAGATCAATTTAAGGTTTCGAATGGTTCAGTAGGGCCTTCTTAGGTG
FD532656       <-- ..................................................
FD565875       --> GTGGAGATCAATTTAAGGTTTCGAATGGTTCAGTAGGGCCTTCTTAGGTG
EV531923       --> GTGGAGATCAATTTAAGGCTTCAAATGGTTCAGTAGGGCCTTCTTAGGTG
FD958787       --> GTGGAGATCAATTTAAGGTTTCGAATGGTTCAGTAGGGCCTTCTTAGGTG

               251    -    301
UN20396        --> CAGTCGCCTTTGCAGGGAACGTCTGCGCAGCGGCAAACCGGTTTTCCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548857       <-- CAGTCGCCTTTGCAGGGAACGTCTGCGCAGCGGCAAACCGGTTTTCCAGC
FD532558       <-- CAGTCGCCTTTGCAGGGAACGTCTGCGCAGCGGCAAACCGGTTTTCCAGC
FD561824       <-- CAGTCGCCTTTGCAGGGAACGTCTGCGCAGCGGCAAACCGGTTTTCCAGC
FD988009       <-- CAGTCGCCTTTGCAGGGAACGTCTGCGCAGCGGCAAACCGGTTTTCCAGC
EV527753       <-- CAGTCGCCTTTGCAGGGAACGTCTGCGCAGCGGCGAACCGGTTTTCCAGC
FD552146       <-- CAGTCGCCTTTGCAGGGAACGTTTGCGCAGCGGCAAACCGGTTTTCCAGC
FD962193       <-- CAGTCGCCTTTGCAGGGAACGTCTGCGCAGCGGCAAACCGGTTTTCCAGC
FD532656       <-- .....................................CCGGTTTTCCAGC
FD565875       --> CAGTCGCCTTTGCAGGGAACGTCTGCGCAGCGGCAAACCGGTTTTCCAGC
EV531923       --> CAGTCGCCTTTGCAGGGAACGTCTGCGCAGCGGCGAACCGGTTTTCCAGC
FD958787       --> CAGTCGCCTTTGCAGGGAACGTCTGCGCAGCGGCAAACCGGTTTTCCAGC

               301    -    351
UN20396        --> AGCTTCCCAGCCATTGAAGCCGCGTTCCAAGATCATTATGTTTTTTATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548857       <-- AGCTTCCCAGCCATTGAAGCCGCGTTCCAAGATCATTATGTTTTTTATTC
FD532558       <-- AGCTTCCCAGCCATTGAAGCCGCGTTCCAAGATCATTATGTTTTTTATTC
FD561824       <-- AGCTTCCCAGCCATTGAAGCCGCGTTCCAAGATCATTATGTTTTTTATTC
FD988009       <-- AGCTTCCCAGCCATTGAAGCCGCGTTCCAAGATCATTATGTTTTTTATTC
EV527753       <-- AGCTTCCCAGCCATTGAAGCCGCGTCCCAAGATCATTATGTTTTTTATTC
FD552146       <-- AGCTTCCCAGCCATTGAAGCCGCGTTCCAAGATCATGATGTTTTTTATTC
FD962193       <-- AGCTTCCCAGCCATTGAAGCCGCGTTCCAAGATGATTATGTTTTTTATTC
FD532656       <-- AGCTTCCCAGCCATTGAAGCCGCGTTCCAAGATCATTATGTTTTTTATTC
FD565875       --> AGCTTCCCAGCCATTGAAGCCGCGTTCCAAGATCATTATGTTTTTTATTC
EV531923       --> AGCTTCCCAGCCATTGAAGCCGCGTCCCAAGATCATTATGTTTTTTATTC
FD958787       --> AGCTTCCCAGCCATTGAAGCCGCGTTCCAAGATGATTATGTTTTTTATTC

               351    -    401
UN20396        --> CAGTTTCTTGTTTCTTCTCGTCAAGATAATTCACTAGTCTTCTTGCACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548857       <-- CAGTTTCTTGTTTCTTCTCGTCAAGATAATTCACGAGTCTTCTTGCACAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532558       <-- CAGTTTCTTGTTTCTTCTCGTCAAGATAATTCACTAGTCTTCTTGCACAT  Raphanus raphanistrum subsp. maritimus
FD561824       <-- CAGTTTCTTGTTTCTTCTCGTCAAGATAATTCACGAGTCTTCTTGCACAT  Raphanus sativus var. oleiformis
FD988009       <-- CAGTTTCTTGTTTCTTCTCGTCAAGATAATTCACTAGTCTTCTTGCACAT  Raphanus raphanistrum subsp. landra
EV527753       <-- CAGTTTCTTGTTTCTTCTCGTCAAGATAATTCACTAGTCTTCTTGCACAT  Raphanus raphanistrum subsp. maritimus
FD552146       <-- CAGTTTCTTGTTTCTTCTCGTCAAGATAATTCACGAGTCTTCTTGCACAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962193       <-- CAGTTTCTTGTTTCTTCTCGTCAAGATAATTCACTAGTCTTCTTGCACAT  Raphanus raphanistrum subsp. maritimus
FD532656       <-- CAGTTTCTTGTTTCTTCTCGTCAAGATAATTCACTAGTCTTCTTGCACAT  Raphanus raphanistrum subsp. maritimus
FD565875       --> CAGTTTCTTGTTTCTTCTCGTCAAGATAATTCACGAGTCTTCTTGCACAT  Raphanus sativus var. oleiformis
EV531923       --> CAGTTTCTTGTTTCTTCTCGTCAAGATAATTCACTAGTCTTCTTGCACAT  Raphanus raphanistrum subsp. maritimus
FD958787       --> CAGTTTCTTGTTTCTTCTCGTCAAGATAATTCACTAGTCTTCTTGCACAT  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN20396        --> GTTGGGCCACGAACCTGGCTGAGAGCACAATGGAAGACAAGTGTGTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548857       <-- GTTGGGCCACGAACCTGGCTGAGAGCACAATGGAAGACAAGTGTGTCTTT
FD532558       <-- GTTGGGCCACGAACCTGGCTGAGAGCACAATGGAAGACAAGTGTGTCTTT
FD561824       <-- GTTGGGCCACGAACCTGGCTGAGAGCACAATGGAAGACAAGTGTGTCTTT
FD988009       <-- GTTGGGCCACGAACCTGGCTGAGAGCACAATGGAAGACAAGTGTGTCTTT
EV527753       <-- GTTGGGCCACGAACCTGGCTGAGAGCACAATGGAAGACAAGTc.......
FD552146       <-- GTTGGGCCACGAACCTGGCTGAGAGCACAATGGAAGACAAGTGTGTCTTT
FD962193       <-- GTTGGGCCACGAACCTGGCTGAGAGCACAATGGAAGACAAGTGTGTCTTT
FD532656       <-- GTTGGGCCACGAACCTGGCTGAGAGCACAATGGAAGACAAGTGTGTCTTT
FD565875       --> GTTGGGCCACGAACCTGGCTGAAAGCACAATGGAAGACAAGTGTGTCTTT
EV531923       --> GTTGGGCCACGAACCTGGCTGAAAGCACAATGGAAAACAAGTc.......
FD958787       --> GTTGGGCCACGAACCTGGCTGAAAGCACAATGGAAGACAAGTGTGTCTTT

               451    -    501
UN20396        --> ATCCTTGACATGTTGAACAAGATGAGAGATCCTATCATCAAAAGAGCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548857       <-- ATCCTTGACATGTTGAACAAGATGAGAGATCCTATCATCAAAAGAGCCAC
FD532558       <-- ATCCTTGACATGTTGAACAAGATGAGAGATCCTATCATCAAAAGAGCCAC
FD561824       <-- ATCCTTGACATGTTGAACAAGATGAGAGATCCTATCATCAAAAGAGCCAC
FD988009       <-- ATCCTTGACATGTTGAACAAGATGAGAGATCCTATCATCAAAAGAGCCAC
EV527753       <-- ..................................................
FD552146       <-- ATCCTTGACATGTTGAACAAGATGAGAGATCCTATCATCAAAAGAGCCAC
FD962193       <-- ATCCTTGACATGTTGAACAAGATGAGAGATTCTATCATCAAAAGAGCCAC
FD532656       <-- ATCCTTGACATGTTGAACAAGATGAGAGATCCTATCATCAAAAGAGCCAC
FD565875       --> ATCCTTGACATGTTGAACAAGATGAGAGATCCTATCATCAAAAGAGCCAC
EV531923       --> ..................................................
FD958787       --> ATCCTTGACATGTTGAACAAGATGAGAGATTCTATCATCAAAAGAGCCAC

               501    -    551
UN20396        --> TCGCATAGTGTAGAGAACCAGCTATATGCCCATCATAATTCCTCTCTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548857       <-- TCGCATAGTGTAGAGAACCAGCTATATGTCCATCATAGTTCCTCTCTTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532558       <-- TCGCATAGTGTAGAGAACCAGCTATATGCCCATCATAATTCCTCTCTTCA  Raphanus raphanistrum subsp. maritimus
FD561824       <-- TCGCATAGTGTAGAGAACCAGCTATATGTCCATCATAGTTCCTCTCTTCA  Raphanus sativus var. oleiformis
FD988009       <-- TCGCATAGTGTAGAGAACCAGCTATATGCCCATCATAATTCCTCTCTTCA  Raphanus raphanistrum subsp. landra
EV527753       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD552146       <-- TCGCATAGTGTAGAGAACCAGCTATATGTCCATCATAGTTCCTCTCTTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962193       <-- TCGCATAGTGTAGAGAACCAGCTATATGCCCATCATAATTCCTCTCTTCA  Raphanus raphanistrum subsp. maritimus
FD532656       <-- TCGCATAGTGTAGAGAACCAGCTATATGCCCATCATAATTCCTCTCTTCA  Raphanus raphanistrum subsp. maritimus
FD565875       --> TCGCATAGTGTAGAGAACCAGCTATATGTCCATCATAGTTCCTCTCTTCA  Raphanus sativus var. oleiformis
EV531923       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD958787       --> TCGCATAGTGTAGAGAACCAGCTATATGCCCATCATAATTCCTCTCTTCA  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN20396        --> TCCCTGACATCTATGATGGCGATGTTGGGACGACGATGAAGAGGAAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548857       <-- TCCCTGACATCTATGATGGCGATGTTGGGACGACGATGGAGAGGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532558       <-- TCCCTGACATCTATGATGGCGATGTTGGGACGACGATGAAGAGGAAGGAG  Raphanus raphanistrum subsp. maritimus
FD561824       <-- TCCCTGACATCTATGATGGCGATGTTGGGACGACGATGGAGAGGAAGGAG  Raphanus sativus var. oleiformis
FD988009       <-- TCCCTGACATCTATGATGGCGATGTTGGGACGACGATGAAGAGGAAGGAG  Raphanus raphanistrum subsp. landra
EV527753       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD552146       <-- TCCCTGACATCTATGATGGCGATGTTGGGACGACGATGGAGAGGGAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962193       <-- TCCCTGACATCTATGATGGCGATGTTGGGACGACGATGAAGAGGAAGGAG  Raphanus raphanistrum subsp. maritimus
FD532656       <-- TCCCTGACATCTATGATGGCGATGTTGGGACGACGATGAAGAGGAAGGAG  Raphanus raphanistrum subsp. maritimus
FD565875       --> TCCCTGACATCTATGATGGCGATGTTGGGA....................  Raphanus sativus var. oleiformis
EV531923       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD958787       --> TCCCTGACATCTATGATGGCGATGTTGGGA....................  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN20396        --> CTGAGTTGAGGTGATGTAAGAGATGCTTCTCGCCGCCATCTTCTTCTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548857       <-- CTGAGTAGAGGTGATGTAAGAGATGCTTCTCGCCGCCATCTTCTTCTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532558       <-- CTGAGTTGAGGTGATGTAAGAGATGCTTCTCGCCGCCATCTTCTTCTTTC  Raphanus raphanistrum subsp. maritimus
FD561824       <-- CTGAGTAGAGGTGATGTAAGAGATGCTTCTCGCCGCCATCTTCTTCTTTC  Raphanus sativus var. oleiformis
FD988009       <-- CTGAGTTGAGGTGATGTAAGAGATGCTTCTCGCCGCCATCTTCTTCTTTC  Raphanus raphanistrum subsp. landra
EV527753       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD552146       <-- CTGAGTAGAGGTGATGTAAGAGATGCTTCTCGCCGCCATCTTCTTCTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962193       <-- CTGAGTTGAGGTGATGTAAGAGATGCTTCTCGCCGCCATCTTCTTCTTTC  Raphanus raphanistrum subsp. maritimus
FD532656       <-- CTGAGTTGAGGTGATGTAAGAGATGCTTCTCGCCGCCATCTTCTTCTTTC  Raphanus raphanistrum subsp. maritimus
FD565875       --> ..................................................  Raphanus sativus var. oleiformis
EV531923       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD958787       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN20396        --> TACCAAAGAAAGAACAAATGCTTCTCCTCACCATCTCTAGAACTCCTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548857       <-- TACCAAAGAAAGAACAAATGCTTCTCacccc...................
FD532558       <-- TACCAAAGAAAGAACAAATGCTTCTCCTCACCATCTCTAGcc........
FD561824       <-- TACCAAAGAAAGAACAAATGCTTCTCacccc...................
FD988009       <-- TACCAAAGAAAGAACAAAaa..............................
EV527753       <-- ..................................................
FD552146       <-- TACCAAAGAAAGAACAAATGCTTCTCaccatctctcc.............
FD962193       <-- TACCAAAGAAAGAACAAATGCTTCTCCTCACCATCTCTAGAACTCCTTTC
FD532656       <-- TACCAAAGAAAGAACAAATGCTTCTCC.......................
FD565875       --> ..................................................
EV531923       --> ..................................................
FD958787       --> ..................................................

               701    -    751
UN20396        --> TACGAACACAACCATTCC
                   ~~~~~~~~~~~~~~~~~~
EV548857       <-- ..................
FD532558       <-- ..................
FD561824       <-- ..................
FD988009       <-- ..................
EV527753       <-- ..................
FD552146       <-- ..................
FD962193       <-- TACGAACACAACCATTCC
FD532656       <-- ..................
FD565875       --> ..................
EV531923       --> ..................
FD958787       --> ..................