1      -     51
UN20418        --> GGGACAACAAGAGAAATCAAGAACAAAGCAAAAACTTT-ATCAACTCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777143       <-- ...................AGAACAAAGCAAAAACTTT-ATCAACTCAAG  Raphanus raphanistrum subsp. landra
FD566698       <-- ...................AGAACAAAGCAAAAACTTC-ATCAACTCAAG  Raphanus sativus var. oleiformis
FD568002       <-- ...................AGAACAAAGCAAAAACTTC-ATCAACTCAAG  Raphanus sativus var. oleiformis
EY923936       --> GGGACAACAAAAGAAATCAAGAACAAAGCAAAAACTTT-ATCAACTCAAG  Raphanus raphanistrum subsp. landra
EV535515       --> .GGACAACAAGAGAAATCAAGAACAACGCAAAAACTTTTATCAACTCAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX773341       --> ...................AGAACAAAGCAAAAACTTT-ATCAACTCAAG  Raphanus raphanistrum subsp. landra
FD562910       --> ...................AGAACAAAGCAAAAACTTC-ATCAACTCAAG  Raphanus sativus var. oleiformis
FD564543       --> ...................AGAACAAAGCAAAAACTTC-ATCAACTCAAG  Raphanus sativus var. oleiformis
EX886689       --> ..................................................  Raphanus sativus var. oleiformis

               51     -    101
UN20418        --> AATCAATAGGAAGCAGAAGATGAAGAGAATTCCTCGTATCAAATTTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777143       <-- AATCAATAGGAAGCAGAAGATGAAGAGAATTCCTCGTATCAAATTTCCTC
FD566698       <-- AATCAATAGGAAGCAGAAGATGAAGAGAATTCCTCGTATCAAATTTCCTC
FD568002       <-- AATCAATAGGAAGCAGAAGATGAAGAGAATTCCTCGTATCAAATTTCCTC
EY923936       --> AATCAATAGGAAGCAGAAGATGAAGAGAATTCCTCGTATCAAATTTCCTC
EV535515       --> AATCAATAGGAAGCAGAATATGAAGAGAATTCCTCGTATCAAATTTCCTC
EX773341       --> AATCAATAGGAAGCAGAAGATGAAGAGAATTCCTCGTATCAAATTTCCTC
FD562910       --> AATCAATAGGAAGCAGAAGATGAAGAGAATTCCTCGTATCAAATTTCCTC
FD564543       --> AATCAATAGGAAGCAGAAGATGAAGAGAATTCCTCGTATCAAATTTCCTC
EX886689       --> ..................................................

               101    -    151
UN20418        --> AGAGACATTCCTCTTCTGCTACTTCATCAGGTTCTGGACCAGCGCAGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777143       <-- AGAGACATTCCTCTTCTGCTACTTCATCAGGTTCTGGACCAGCGCAGGGA
FD566698       <-- AGAGACATTCCTCTTTTGCTACTTCATCAGGTTCTGGACCAGCGCAGGGA
FD568002       <-- AGAGACATTCCTTTTTTGCTACTTCATCAGGTTCTGGACCAGCGCAGGGA
EY923936       --> AGAGACATTCCTCTTCTGCTACTTCATCAGGTTCTGGACCAGCGCAGGGA
EV535515       --> AGAGACATTCCTCTTCTGCTACTTCATCAGGTTCTGGACCAGCGCAGGGA
EX773341       --> AGAGACATTCCTCTTCTGCTACTTCATCAGGTTCTGGACCAGCGCAGGGA
FD562910       --> AGAGACATTCCTCTTCTGCTACTTCATCAGGTTCTGGACCAGCGCAGGGA
FD564543       --> AGAGACATTCCTCTTCTGCTACTTCATCAGGTTCTGGACCAGCGCAGGGA
EX886689       --> ..................................................

               151    -    201
UN20418        --> TCCGTTGCCGGCGGCAAGAGAAACGTGACGGCGAGTTCAGATGTCCCGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777143       <-- TCCGTTGCCGGCGGCAAGAGAAACGTGACGGCGAGTTCAGATGTCCCGGC
FD566698       <-- TCCGTTGCCGGCGGCAAGAGAAACGTGACGGCGAGTTCAGATGTCCCGGC
FD568002       <-- TCCGTTGCCGGCGGCAAGAGAAACGTGACGGCGAGTTCAGATGTCCCGGC
EY923936       --> TCCGTTGCCGGCGGCAAGAGAAACGTGACGGCGAGTTCAGATGTCCCGGC
EV535515       --> TCCGTTGCCGGCGGCAAGAGAAACGTGACGGCGAGTTCAGATGTCCCGGC
EX773341       --> TCCGTTGCCGGCGGCAAGAGAAACGTGACGGCGAGTTCAGATGTCCCGGC
FD562910       --> TCCGTTGCCGGCGGCAAGAGAAACGTGACGGCGAGTTCAGATGTCCCGGC
FD564543       --> TCCGTTGCCGGCGGCAAGAGAAACGTGACGGCGAGTTCAGATGTCCCGGC
EX886689       --> ..................................................

               201    -    251
UN20418        --> GGCGCCGAAGAACATTGCTGATGGAGGGAAAGCATCACTCCAGCCTAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777143       <-- GGCGCCGAAGAACATTGCTGATGGAGGGAAAGCATCACTCCAGCCTAAAC  Raphanus raphanistrum subsp. landra
FD566698       <-- AGCCCCGAAGAACATTGCTGATGGAGGGAAAGCATCACTCCAGCCTAAAC  Raphanus sativus var. oleiformis
FD568002       <-- GGCCCCGAAGAACATTGCTGATGGAGGGAAAGCATCACTCCAGCCTAAAC  Raphanus sativus var. oleiformis
EY923936       --> GGCGCCGAAGAACATTGCTGATGGAGGGAAAGCATCACTCCAGCCTAAAC  Raphanus raphanistrum subsp. landra
EV535515       --> GGCGCCTAAGAACATTGCTGATGGAGGGAAAGCATCACTCCAGCCGAAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX773341       --> GGCGCCGAAGAACATTGCTGATGGAGGGAAAGCATCACTCCAGCCTAAAC  Raphanus raphanistrum subsp. landra
FD562910       --> AGCCCCGAAGAACATTGCTGATGGAGGGAAAGCATCACTCCAGCCTAAAC  Raphanus sativus var. oleiformis
FD564543       --> GGCCCCGAAGAACATTGCTGATGGAGGGAAAGCATCACTCCAGCCTAAAC  Raphanus sativus var. oleiformis
EX886689       --> ............gATTGCTGATGGAGGGAAAGCATCACTCCAGCCTAAAC  Raphanus sativus var. oleiformis

               251    -    301
UN20418        --> GCACTCCTGTCTCCGACAAGGAAATCGAATCCATAATGTTGGGAGGTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777143       <-- GCACTCCTGTCTCCGACAAGGAAATCGAATCCATAATGTTGGGAGGTTGC
FD566698       <-- GCACTCCTGTTTCCGACAAGGAAATCGAATCCATAATGTTGGGAGGTTGC
FD568002       <-- GCACTCCTGTTTCCGACAAGGAAATCGAATCCATAATGTTGGGAGGTTGC
EY923936       --> GCACTCCTGTCTCCGACAAGGAAATCGAATCCATAATGTTGGGAGGTTGC
EV535515       --> GCACTCCTGTCTCCGACAAGGAAATCGAATCCATAATGTTGGGAGGTTGC
EX773341       --> GCACTCCTGTCTCCGACAAGGAAATCGAATCCATAATGTTGGGAGGTTGC
FD562910       --> GCACTCCTGTCTCCGACAAGGAAATCGAATCCATAATGTTGGGAGGTTGC
FD564543       --> GCACTCCTGTCTCCGACAAGGAAATCGAATCCATAATGTTGGGAGGTTGC
EX886689       --> GCACTCCTGTCTCCGACAAGGAAATCGAATCCATAATGTTGGGAGGTTGC

               301    -    351
UN20418        --> ATCTGATGTTTGAAGATTTGATCATCACTTTGGGCTTCTTGTCTTTTTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777143       <-- ATCTGATGTTTGAAGATT-GATCATCACTTTGGGCTTCTTGTCTTTTTCG
FD566698       <-- ATCTGATGTTTGAAGATTTGATCATCACTTTGGGCTTCTTGTCTTTTTCG
FD568002       <-- ATCTGATGTTTGAAGATTTGATCATCACTTTGGGCTTCTTGTCTTTTTCG
EY923936       --> ATCTGATGTTTGAAGATT-GATCATCACTTTGGTCTTCTTGTCTTTTTCT
EV535515       --> ATCTGATGTTTGAAGATTTGATCATCACTTTGGGCTTCT-GTCTTTTTCG
EX773341       --> ATCTGATGTTTGAAGATT-GATCATCACTTTGGGCTTCTTGTCTTTTTCG
FD562910       --> ATCTGATGTTTGAAGATTTGATCATCACTTTGGGCTTCTTGTCTTTTTCG
FD564543       --> ATCTGATGTTTGAAGATTTGATCATCACTTTGGGCTTCTTGTCTTTTTCG
EX886689       --> ATCTGATGTTTGAAGATTTGATCATCACTTTGGGCTTCTTGTCTTTT-CG

               351    -    401
UN20418        --> GCTGGTGAATTTTATTAT-ATGCTTTTTTAATGTAAAGGAAGAACTAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777143       <-- GCTGGTGAACTTTATTAT-ATGCTTTTTTAATGTAAAGGAAGAACTAATA  Raphanus raphanistrum subsp. landra
FD566698       <-- GCTGGTGAATTTTATTAT-ATGCTTTTTTAATGTAAAGGAAGAACTAATA  Raphanus sativus var. oleiformis
FD568002       <-- GCTGGTGAATTTTATTAT-ATGCTTTTTTAATGTAAAGGAAGAACTAATA  Raphanus sativus var. oleiformis
EY923936       --> GCTGGTGAACTTTATTAT-ATGCTTTTTTAATGTAAAGGAAGAACTAATA  Raphanus raphanistrum subsp. landra
EV535515       --> GCTGGTGAAGTTTAATATTATGCTTTTTTAATGTAAAGGAAGAACTAATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX773341       --> GCTGGTGAACTTTATTAT-ATGCTTTTTTAATGTAAAGGAAGAACTAATA  Raphanus raphanistrum subsp. landra
FD562910       --> GCTGGTGAATTTTATTAT-ATGCTTTTTTAATGTAAAGGAAGAACTAATA  Raphanus sativus var. oleiformis
FD564543       --> GCTGGTGAATTTTATTAT-ATGCTTTTTTAATGTAAAGGAAGAACTAATA  Raphanus sativus var. oleiformis
EX886689       --> GCTGGTGAATTTTATTAT-ATGCTTTTTTAATGTAAAGGAAGAACTAATA  Raphanus sativus var. oleiformis

               401    -    451
UN20418        --> ATGCAGAGAAGATGATGTGTTGTATGAATGATGATGTTGTATGAATGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777143       <-- ATGCAGAGAAGATGATGTGTTGTATGAATGATTCTGTTGTATGAATGATT
FD566698       <-- ATGCAGAGAAGATGATGTGTTGTATGAATGATGATGTTGTATGAATGATT
FD568002       <-- ATGCAGAGAAGATGATGTGTTGTATGAATGATGATGTTGTATGAATGATT
EY923936       --> ATGCAGAGAAGATGATGTGTTGTATGAATGATTCTGTTGTATGAATGATT
EV535515       --> ATGCAGAGAAGATGATGTGTTGTATGAATGATGATGTTGTATGAATGATT
EX773341       --> ATGCAGAGAAGATGATGTGTTGTATGAATGATTCTGTTGTATGAATGATT
FD562910       --> ATGCAGAGAAGATGATGTGTTGTATGAATGATGATGTTGTATGAATGATT
FD564543       --> ATGCAGAGAAGATGATGTGTTGTATGAATGATGATGTTGTATGAATGATT
EX886689       --> ATGCAGAGAAGATGATGTGTTGTATGAATGATGATGTTGTATGAATGATT

               451    -    501
UN20418        --> CTGTTTCTCTTTGTCAATTAAAAAACAAAGTCTATATAGTCTTCACAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777143       <-- CTGTTTCTCTTTGTCAATTAAAAAACAAAGTCTATATAGTttctagc...
FD566698       <-- CTGTTTCTCTTTGTCAATTAAAAAACAAAGTCTATATAGTttct......
FD568002       <-- CTGTTTCTCTTTGTCAATT...............................
EY923936       --> CTGTTTCTCTTTGTCAATTAAAAAACAAAGTCTATAT.............
EV535515       --> CTGTTTCTCTTTGTCAATTAAAAAACAAAGTCTATATAGTCTTCACAATT
EX773341       --> CTGTTTCTCTTTGTCAATTAAAAAACAAAGTCTATATAGTttctagc...
FD562910       --> CTGTTTCTCTTTGTCAATTAAAAAACAAAGTCTATATAGTttct......
FD564543       --> CTGTTTCTCTTTGTCAATTAAAAAA.........................
EX886689       --> CTGTTTCTCTTTGTCAATTAAAAAACAAAGTCTATATAGTttct......

               501    -    551
UN20418        --> TTTTATTAGG
                   ~~~~~~~~~~
EX777143       <-- ..........
FD566698       <-- ..........
FD568002       <-- ..........
EY923936       --> ..........
EV535515       --> TTTTATTAGG
EX773341       --> ..........
FD562910       --> ..........
FD564543       --> ..........
EX886689       --> ..........