1      -     51
UN20454        --> ATTCCTCCGACAAGGACGAGGTTCCAAGAGGACTTGGCTTCTTGTTCTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- ..................................................
EX890910       <-- ..................................................
EY904045       <-- ..................................................
EV526820       --> ATTCCTCCGACAAGGACGAGGTTCCAAGAGGACTTGGCTTCTTGTTCTAC
FD980203       --> ..................................................
EV538023       --> ..................................................
EY908329       --> ..................................................

               51     -    101
UN20454        --> AATATAATATAAGCAAAATCAATTCAAGAGTTCTGGAACACTTGATCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- ..................................................
EX890910       <-- ..................................................
EY904045       <-- ..................................................
EV526820       --> AATATAATATAAGCAAAATCAATTCAAGAGTTCTGGAACACTTGATCTCA
FD980203       --> ..................................................
EV538023       --> ..................................................
EY908329       --> ..................................................

               101    -    151
UN20454        --> CTGAAAGCAGCAAATGGGGGAACAAGGTCGGTATGGAAGGAGAAAGACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- ..................................................
EX890910       <-- ..................................................
EY904045       <-- ..................................................
EV526820       --> CTGAAAGCAGCAAATGGGGGAACAAGGTCGGTATGGAAGGAGAAAGACTC
FD980203       --> ..................................................
EV538023       --> ..................................................
EY908329       --> ..................................................

               151    -    201
UN20454        --> AGAATTCAAACCGGGAAAGGTTTGAAGAAGGTCAAATGGGAGAAATTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- ..................................................
EX890910       <-- ..................................................
EY904045       <-- ..................................................
EV526820       --> AGAATTCAAACCGGGAAAGGTTTGAAGAAGGTCAAATGGGAGAAATTCAC
FD980203       --> ..................................................
EV538023       --> ..................................................
EY908329       --> ..................................................

               201    -    251
UN20454        --> TGGAAAAGCACCAGGAATGACATGGTACCAGACCTACTTCGATGCACCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- .........................................ATGCACCAG
EX890910       <-- ..................................................
EY904045       <-- ..................................................
EV526820       --> TGGAAAAGCACCAGGAATGACATGGTACCAGACCTACTTCGATGCACCAG
FD980203       --> ..................................................
EV538023       --> ..................................................
EY908329       --> ..................................................

               251    -    301
UN20454        --> AGAGCGAAAGCGCAGCAGCGATACGCATGAGTGGAATGGGAAAAGGGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- AGAGCGAAAGCGCAGCAGCGATACGCATGAGTGGAATGGGAAAAGGGTTG
EX890910       <-- ..................................................
EY904045       <-- ..................................................
EV526820       --> AGAGCGAAAGCGCAGCAGCGATACGCATGAGTGGAATGGGAAAAGGGTTG
FD980203       --> ..................................................
EV538023       --> ..................................................
EY908329       --> ..................................................

               301    -    351
UN20454        --> ATTTGGGTGAATGGAGAAGGTGTTGGAAGATATTGGATGTCTTTCTTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- ATTTGGGTGAATGGAGAAGGTGTTGGAAGATATTGGATGTCTTTCTTGAA
EX890910       <-- ..................................................
EY904045       <-- ..................................................
EV526820       --> ATTTGGGTGAATGGAGAAGGTGTTGGAAGATATTGGATGTCTTTCTTGAA
FD980203       --> ..................................................
EV538023       --> ..................................................
EY908329       --> ..................................................

               351    -    401
UN20454        --> TCCATTAAATCAATCCACGCAAATAGAATATCACATCCCTAGATCTTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- TCCATTAAATCAATCCACGCAAATAGAATATCACATCCCTAGATCTTTCT
EX890910       <-- .........TCAATCCACGCAAATAGAATATCACATCCCTAGATCTTTCT
EY904045       <-- ..................................................
EV526820       --> TCCATTAAATCAATCCACGCAAATAGAATATCACATCCCTAGATCTTTCT
FD980203       --> .........................GAATATCACATCCCAAGATCTTTCT
EV538023       --> ..................................................
EY908329       --> ..................................................

               401    -    451
UN20454        --> TGAAGCCCAAGAAAAATCTTCTCGTTATATTCGAGGAAGAGCCTAATGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- TGAAGCCCAAGAAAAATCTTCTCGTTATATTCGAGGAAGAGCCTAATGTG
EX890910       <-- TGAAGCCCAAGAAAAATCCTCTCGTTATATTCGAGGAAGAGCCTAATGTG
EY904045       <-- ..................................................
EV526820       --> TGAAGCCCAAGAAAAATCTTCTCGTTATATTCGAGGAAGAGCCTAATGTG
FD980203       --> TGAAGCCCAAGAAAAATCTTCTTGTTATATTCGAGGAAGAGCCTAATGTG
EV538023       --> ..............................................gGTG
EY908329       --> ..................................................

               451    -    501
UN20454        --> AAGCCTGAGCTTATAGACTTTGTCATCGTCAACAGAGACACTGTTTGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- AAGCCTGAGCTTATAGACTTTGTCATCGTCAACAGAGACACTGTTTGTTC
EX890910       <-- AAGCCTGAGCTTATAGACTTTGTCATCGTCAACAGAGACACTGTTTGTTC
EY904045       <-- ..................................................
EV526820       --> AAGCCTGAGCTTATAGACTTTGTCATCGTCAACAGAGACACTGTTTGTTC
FD980203       --> AAGCCTGAGCTTATAGACTTTGTCATCGTCAACAGAGACACTGTTTGCTC
EV538023       --> AAGCCTGAGCTTATAGACTTTGTCATCGTCAACAGAGACACTGTTTGTTC
EY908329       --> ..................................................

               501    -    551
UN20454        --> TTACGTCGGAGAAAACTACACTCCAAGTGTTGGACACTGGATTAGGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- TTACGTCGGAGAAAACTACACTCCAAGTGTTGGACACTGGATTAGGAAGA
EX890910       <-- TTACGTCGGAGAAAACTACACTCCAAGTGTTGGACACTGGATTAGGAAGA
EY904045       <-- ......................CCAAGTGTTGGACACTGGATTAGGAAGA
EV526820       --> TTACGTCGGAGAAAACTACACTCCAAGTGTTGGACACTGGATTAGGAAGA
FD980203       --> TTACGTCGGAGAAAACTACACTCCAAGTGTTGGACACTGGATTAGGAAGA
EV538023       --> TTACGTCGGAGAAAACTACACTCCAAGTGTTGGACACTGGATTAGGAAGA
EY908329       --> ......................CCAAGTGTTGGACACTGGATTAGGAAGA

               551    -    601
UN20454        --> AAGACGAGGTCCAAGCCATCACAGATAAAGTGAGTCTCACGGCTACTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- AAGACGAGGTCCAAGCCATCACAGATAAAGTGAGTCTCACGGCTACTCTT  Raphanus raphanistrum subsp. maritimus
EX890910       <-- AAGACGAGGTCCAAGCCATCACAGATAAAGTGAGTCTCACGGCTACTTTT  Raphanus sativus var. oleiformis
EY904045       <-- AAGACGAGGTCCAAGCCATCACAGATAAGGTGAGTCTCACGGCTACTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526820       --> AAGACGAGGTCCAAGCCATCACAGATAAAGTGAGTCTCACGGCTACTCTT  Raphanus raphanistrum subsp. maritimus
FD980203       --> AAGACGAGGTCCAAGCCATCACAGATAAAGTGAGTCTCACGGCTACTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538023       --> AAGACGAGGTCCAAGCCATCACAGATAAGGTGAGTCTCACGGCTACTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908329       --> AAGACGAGGTCCAAGCCATCACAGATAAGGTGAGTCTCACGGCTACTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)

               601    -    651
UN20454        --> AAATGCTCAGGCACTAAGAAGATCGCAGCCGTTGAGTTCGCTAGCTTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- AAATGCTCAGGCAATAAGAAGATCGCAGCCGTTGAGTTCGCTAGCTTCGG  Raphanus raphanistrum subsp. maritimus
EX890910       <-- AAATGCTCAGGCAATAAGAAGATCGCAGCCGTTGAGTTCGCTAGCTTCGG  Raphanus sativus var. oleiformis
EY904045       <-- AAATGCTCAGGCACTAAGAAGATCGCAGCCGTTGAGTTCGCTAGCTTCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526820       --> AAATGCTCAGGCAATAAGAAGATCGCAGCCGTTGAGTTCGCTAGCTTCGG  Raphanus raphanistrum subsp. maritimus
FD980203       --> AAATGCTCAGGCACTAAGAAGATCGCAGCCGTTGAGTTCGCTAGCTTCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538023       --> AAATGCTCAGGCACTAAGAAGATCGCAGCCGTTGAGTTCGCTAGCTTCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908329       --> AAATGCTCAGGCACTAAGAAGATCGCAGCCGTTGAGTTCGCTAGCTTCGG  Raphanus raphanistrum subsp. raphanistrum (MS)

               651    -    701
UN20454        --> AAACCCTATTGGTGATTGTGGAAACTTCACACTTGGTACTTGTAATGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- AAACCCTATTGGTGATTGTGGAAACTTCACACTTGGTACTTGTAATGCTC
EX890910       <-- AAACCCTATTGGTGATTGTGGAAACTTCACACTTGGTACTTGTAATGCTC
EY904045       <-- AAACCCTATTGGTGATTGTGGAAACTTCACACTTGGTACTTGTAATGCTC
EV526820       --> AAACCCTATTGGTGATTGTGGAAACTTCACACTTGGTACTTGTAATGCTC
FD980203       --> AAACCCTATTGGTGATTGCGGAAACTTCACGCTTGGTACTTGTAATGCTC
EV538023       --> AAACCCTATTGGTGATTGTGGAAACTTCACACTTGGTACTTGTAATGCGC
EY908329       --> AAACCCTATTGGTGATTGTGGAAACTTCACACTTGGTACTTGTAATGCTC

               701    -    751
UN20454        --> CTGTTTCAAAGCAAGTCGTTGAGAAGCATTGTTTGGGAAAAGCAGAGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- CTGTTTCAAAGCAAGTCGTTGAGAAGCATTGTTTGGGAAAAGCAGAGTGT
EX890910       <-- CTGTTTCAAAGCAAGTCGTTGAGAAGCATTGTTTGGGAAAAGCAGAGTGT
EY904045       <-- CTGTTTCAAAGCAAGTCGTTGAGAAGCATTGTTTGGGAAAAGCAGAGTGT
EV526820       --> CTGTTTCAAAGCAAGTCGTTGAGAAGCATTGTTTGGGAAAA.........
FD980203       --> CTGTTTCAAAGCAAGTCGTTGAGAAGCATTGTTTGGGAAAAGCAGAGTGT
EV538023       --> CTGTTTCAAAGCAAGTCGTTGAGAAGCATTGTTTGGGAAAAGCAGAGTGT
EY908329       --> CTGTTTCAAAGCAAGTCGTTGAGAAGCATTGTTTGGGAAAAGCAGAGTGT

               751    -    801
UN20454        --> GTGATTCCGGTGAACAAAAGCACATTCCAACAAGACAAGAAGGATTCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- GTGATTCCGGTGAACAAAAGCACATTCCAACAAGACAAGAAGGATTCATG
EX890910       <-- GTGATTCCGGTGAACAAAAGCACATTCCAACAAGACAAGAAGGATTCATG
EY904045       <-- GTGATTCCGGTGAACAAAAGCACATTCCAACAAGACAAGAAGGATTCATG
EV526820       --> ..................................................
FD980203       --> GTGATTCCGGTGAACAAAAGCACATTCCAACAAGACAAGAAGGATTCATG
EV538023       --> GTGATTCCAGTGAACAAAAGCACATTCCAACAAGACAAGAAGGATTCATG
EY908329       --> GTGATTCCGGTGAACAAAAGCACATTCCAACAAGACAAGAAGGATTCATG

               801    -    851
UN20454        --> TAAGAACGTTGTGAAGACTCTTGCCGTGCAAGTCAAGTGTGCTCGTGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- TAAGAACGTTGTGAAGACGCTTGCCGTGCAAGTCAAGTGTGCTCGTGGCA
EX890910       <-- TAAGAACGTTGTGAAGACGCTTGCCGTGCAAGTCAAGTGTGCTCGTGGCA
EY904045       <-- TAAGAACGTTGTGAAGACTCTTGCCGTGCAAGTCAAGTGTGCTCGTGACA
EV526820       --> ..................................................
FD980203       --> TAAGAACGTCGTGAAGACTCTGGCCGTGCAAGTCAAGTGTGCTCGTGACA
EV538023       --> TAAGAACGTAGTGAAGAAGCTTGCCGTGCAAGTCAAGTGTGCTCGTGGCA
EY908329       --> TAAGAACGTTGTGAAGACTCTTGCCGTGCAAGTCAAGTGTGCTCGTGACA

               851    -    901
UN20454        --> AGAAGAACTGAGGGTTGAATGGTTCATATTCTGCGTTTATTTTGGCAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- AGAAGAACTGAGGGTTGAATGGTTCATATTCTGCGTTTATTTTGGCAAAA
EX890910       <-- AGAAGAACTGAGGGTTGAATGGTTCATATTTTGCGTTTATTTTGGCAAAA
EY904045       <-- AGAAGAACTGAGGGTTGAATGGTTCATATTTTGCGTTTATTTTGGCAAAA
EV526820       --> ..................................................
FD980203       --> AGAAGAACTGAGGGTTGAATGGTTCATATTCTGCGTTTATTTTGGCAAAA
EV538023       --> AGAAGAACTGAGGGTTGAATGGTTCATATTCTGCGTTTATTTTGGCAAAA
EY908329       --> AGAAGAACTGAGG-TTGAA...............................

               901    -    951
UN20454        --> A-AA--TATTCTGCGTTTAATTGACCAATTTCAAAAAGTGTTGTGGCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- A-AA--TATTCTGCGTTTAATTGACCAATTTCAAAAAGTGTTGTGGCAGT
EX890910       <-- A-AA--TATTATGCGTTTAATTGACCAATTTCAAAAAGTGTTGTGGCAGT
EY904045       <-- ACAA--TATTTTGCGTTTAATTGACCAATTTCAAAAA-TGTTGTGGCAGT
EV526820       --> ..................................................
FD980203       --> A-AAAATATTCTGCGTTTAATTGACCAATTTCAAAAA-TGTTGTGGCAGT
EV538023       --> A-AAAATATTCTGCGTTTAATTGACCAATTTCAAAAAGTGTTGTGGTAGT
EY908329       --> ..................................................

               951    -   1001
UN20454        --> GTTGATTTTTGTCTCTCGGCTTGTACTTGGTTTCTTGAATTTAAACGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- GTTGATTTTTGTCTCTCGGCTTGTACTTGGTTTCTTGAATTTAAACGTTT
EX890910       <-- GTTGATTTTTGTCTCTCGGCTTGTACTTGGTTTCTTGAATTTAAACGTTT
EY904045       <-- GTTG..............................................
EV526820       --> ..................................................
FD980203       --> GTTGATTTTTGTCTCTCGGCTTGTACTTGGTTTCTTGAATTTAAACGTTT
EV538023       --> GTTGATTTTTGTCTCTCGGCTTGTACTTGGTTTCTTGAATTTAAACGTTT
EY908329       --> ..................................................

               1001   -   1051
UN20454        --> ACATCCGAGTAAGATATTGGGAATATGATCCGAGCAAATAAC---TACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- ACATCCGAGTAAGATATTGGGAATATGATCCGAGCAAATAAC---T....
EX890910       <-- ACATCCGAGTAAGATATTGGGAATATGATCCGAGCAAATAAC---TACAT
EY904045       <-- ..................................................
EV526820       --> ..................................................
FD980203       --> ACATCCaaa.........................................
EV538023       --> ACATCCGAGTAAGATATTGGGAATATGATCCGAGCAAATAACAACTACAT
EY908329       --> ..................................................

               1051   -   1101
UN20454        --> ATTTAAACAATTATTTGTTTTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~
EV531205       <-- ........................
EX890910       <-- ATTTAAACAATTATTTGTTTTATT
EY904045       <-- ........................
EV526820       --> ........................
FD980203       --> ........................
EV538023       --> ATTTAAA.................
EY908329       --> ........................