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Alignment for radish unigene UN20461

               1      -     51
UN20461        --> GGGTCCACATTCAATTTGCTTCGCTTTCTCAGATTCTATCCCGTGATCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- ..................................................
FD983168       <-- ..................................................
EW730055       <-- ..................................................
EX898815       <-- ..................................................
EW728583       <-- ..................................................
EX888494       --> GGGTCCACATTCAATTTGCTTCGCTTTCTCAGATTCTATCCCGTGATCCT
EW725607       --> ....................ggGCTTTCTCAGATTCTATCCCGTGATCCT
FD572510       --> ....................ggGCTTTCTCAGATTCTATCCCGTGATCCT
FD947921       --> .................aggggGCTTTCTCAGATTCTATCCCGTGATCCT
EV526158       --> ............................ggAGATTCTATCCCGTGATCCT
EX896167       --> ..................................................
FD979746       --> ..................................................
EW724531       --> ..................................................
EX895009       --> ..................................................
FD987051       --> ..................................................
FD979006       --> ..................................................
EX894502       --> ..................................................

               51     -    101
UN20461        --> GTGCTCCTGCTCGTATAATATAACTAAGTGGTTAGATACTAAAAAGGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- ..................................................
FD983168       <-- ..................................................
EW730055       <-- ..................................................
EX898815       <-- ..................................................
EW728583       <-- ..................................................
EX888494       --> GTGCTCCTGCTCGTATAATATAACTAAGTGGTTAGATACTAAAAAGGGTA
EW725607       --> GTGCTCCTGCTCGTATAATATAACTAAGTGGTTAGATACTAAAAAGGGAA
FD572510       --> GTGCTCCTGCTCGTATAATATAACTAAGTGGTTAGATACTAAAAAGGGAA
FD947921       --> GTGCTCCTGCTCGTATAATATAACTAAGTGGTTAGATACTAAAAAGGGAA
EV526158       --> GTGCTCCTGCTCGTATAATATAACTAAGTGGTTAGATACTAAAAAGGGAA
EX896167       --> ....gCCTGCTCGTATAATATAACTAAGTGGTTAGATACTAAAAAGGGAA
FD979746       --> ..............................................GGAA
EW724531       --> ...............................................ggA
EX895009       --> ..................................................
FD987051       --> ..................................................
FD979006       --> ..................................................
EX894502       --> ..................................................

               101    -    151
UN20461        --> TACTCTATTGATCAGATTCCATTGATTTGGA-AGAAAAAAA-TGGACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- ..................................................
FD983168       <-- ..................................................
EW730055       <-- ..................................................
EX898815       <-- ..................................................
EW728583       <-- ..................................................
EX888494       --> TACTCTATTGATCAGATTCCATTGATTTGGAGAGAGAAAAA-TGGACAAG
EW725607       --> TACTCTATTGATCAGATTCCATTGATTTGGA-AGAAAAAAA-TGGACAAG
FD572510       --> TACTCTATTGATCAGATTCCATTGATTTGGA-AGAAAAAAA-TGGACAAG
FD947921       --> TACTCTATTGATCAGATTCCATTGATTTGGA-AGAAAAAAA-TGGACAAG
EV526158       --> TACTCTATTGATCAGATTCCATTGATTTGGA-AGAAAAAAA-TGGACAAG
EX896167       --> TACTCTATTGATCAGATTCCATTGATTTGGA-AGAAAAAAA-TGGACAAG
FD979746       --> TACTAT-TTGATCAGATTGCATTGATTTGGA-AGAAAAAAA-TGGACAAG
EW724531       --> TACTCTATTGATCAGATTCCATTGATTTGGA-AGAAAAAAA-TGGACAAG
EX895009       --> ...........ggAGATTCCATTGATTTGGA-AGAAAAAAAATGGACAAG
FD987051       --> ...........ggAGATTGCATTGATTTGGA-GAAAAAAAA-TGGACAAG
FD979006       --> ................gggCATTGATTTGGA-AGAAAAAAAATGGACAAG
EX894502       --> ..................................................

               151    -    201
UN20461        --> TATGAGGTTGTGAAGGATTTAGGAACTGGAAACTTCGGCGTGGCTCGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- ..................................................  Raphanus sativus var. oleiformis
FD983168       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW730055       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX898815       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW728583       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX888494       --> TATGAGGTTGTGAAGGATCTAGGAACTGGAAACTTCGGTGTGGCTCGTCT  Raphanus sativus var. oleiformis
EW725607       --> TATGAGGTTGTGAAGGATTTAGGAACTGGAAACTTCGGCGTGGCTCGTCT  Raphanus sativus cv Early Scarlet Globe
FD572510       --> TATGAGGTTGTGAAGGATT-AGGAACTGGAAACTTCGGCGTGGCTCGTCT  Raphanus sativus cv Early Scarlet Globe
FD947921       --> TATGAGGTTGTGAAGGATTTAGGAACTGGAAACTTCGGCGTGGCTCGTCT  Raphanus sativus cv Early Scarlet Globe
EV526158       --> TATGAGGTTGTGAAGGATTTAGGAACTGGAAACTTCGGCGTGGCTCGTCT  Raphanus raphanistrum subsp. maritimus
EX896167       --> TATGAGGTTGTGAAGGATTTAGGAACTGGAAACTTCGGCGTGGCTCGTCT  Raphanus sativus cv Early Scarlet Globe
FD979746       --> TATGAGGTTGTGAAGGATCTAGGAACTGGAAACTTCGGCGTGGCTCGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW724531       --> TATGAGGTTGTGAAGGATTTAGGAACTGGAAACTTCGGCGTGGCTCGTCT  Raphanus sativus cv Early Scarlet Globe
EX895009       --> TATGAGGTTGTGAAGGATTTAGGAACTGGAAACTTCGGCGTGGCTCGTCT  Raphanus sativus cv Early Scarlet Globe
FD987051       --> TATGAGGTTGTGAAGGATCTAGGAACTGGAAACTTCGGCGTGGCTCGTCT  Raphanus raphanistrum subsp. landra
FD979006       --> TATGAGGTTGTGAAGGATCTAGGAACTGGAAACTTCGGCGTGGCTCGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX894502       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               201    -    251
UN20461        --> TCTGAAGCACAAGGAGACCAATGAGCTCGTTGCCATGAAATACATCGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- ..................................................
FD983168       <-- ..................................................
EW730055       <-- ..................................................
EX898815       <-- ..................................................
EW728583       <-- ..................................................
EX888494       --> TCTGAAGCACAAGGAGACCAATGAGCTCGTTGCCATGAAATACATCGAGA
EW725607       --> TCTGAAGCACAAGGAGACCAATGAGCTCGTTGCCATGAAATACATCGAGA
FD572510       --> TCTGAAGCACAAGGAGACCAATGAGCTCGTTGCCATGAAATACATCGAGA
FD947921       --> TCTGAAGCACAAGGAGGCCAATGAGCTCGCTGCCATGAAATACATCGAGA
EV526158       --> TCTGAAGCACAAGGAGACCAATGAGCTCGTTGCCATGAAATACATCGAGA
EX896167       --> TCTGAAGCACAAGGAGACCAATGAGCTCGTTGCCATGAAATACATCGAGA
FD979746       --> TCTGAAGCACAAGGAGACCAATGAGCTCGTTGCCATGAAGTACATCGAGA
EW724531       --> TCTGAAGCACAAGGAGACCAATGAGCTCGTTGCCATGAAATACATCGAGA
EX895009       --> TCTGAAGCACAAGGAGACCAATGAGCTCGTTGCCATGAAATACATCGAGA
FD987051       --> TCTGAAGCACAAGGAGACCAATGAGCTCGTTGCCATGAAATACATCGAGA
FD979006       --> TCTGAAGCACAAGGAGACCAATGAGCTCGTTGCCATGAAATACATCGAGA
EX894502       --> ..................................................

               251    -    301
UN20461        --> GAGGCCGAAAGATAGATGAGAACGTGGCTAGAGAGATTATCAATCACAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- ..................................................
FD983168       <-- ..................................................
EW730055       <-- ..................................................
EX898815       <-- ..................................................
EW728583       <-- ..................................................
EX888494       --> GAGGCCGAAAGATAGATGAGAACGTGGCTAGAGAGATTATCAATCACAGA
EW725607       --> GAGGCCGAAAGATAGATGAGAACGTGGCTAGAGAGATTATCAATCACAGA
FD572510       --> GAGGCCGAAAGATAGATGAGAACGTGGCTAGAGAGATTATCAATCACAGA
FD947921       --> GAGGCCGAAAGATAGATGAGAACGTGGCTAGAGAGATTATCAATCACAGA
EV526158       --> GAGGCCGAAAGATAGATGAGAACGTGGCTAGAGAGATTATCAATCACAGA
EX896167       --> GAGGCCGAAAGATAGATGAGAACGTGGCTAGAGAGATTATCAATCACAGA
FD979746       --> GAGGCCGAAAGATAGATGAGAACGTGGCTAGAGAGATTATCAATCACAGA
EW724531       --> GAGGCCGAAAGATAGATGAGAACGTGGCTAGAGAGATTATCAATCACAGA
EX895009       --> GAGGCCGAAAGATAGATGAGAACGTGGCTAGAGAGATTATCAATCACAGA
FD987051       --> GAGGCCGAAAGATAGATGAGAACGTGGCTAGAGAGATTATCAATCACAGA
FD979006       --> GAGGCCGAAAGATAGATGAGAACGTGGCTAGAGAGATTATCAATCACAGA
EX894502       --> ..................................................

               301    -    351
UN20461        --> TCACTTAAGCATCCTAATATCATCCGCTTCAAGGAGGTGATTCTGACACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- ..................................................
FD983168       <-- ..................................................
EW730055       <-- ..................................................
EX898815       <-- ..................................................
EW728583       <-- ..................................................
EX888494       --> TCACTTAAGCATCCTAATATCATCCGCTTCAAGGAGGTGATTCTGACACC
EW725607       --> TCACTTAAGCATCCTAATATCATCCGCTTCAAGGAGGTGATTCTGACACC
FD572510       --> TCATTTAAGCATCCTAATATCATCCGCTTCAAGGAGGTGATTCTGACACC
FD947921       --> TCACTTAAGCATCCTAATATCATCCGCTTCAAGGAGGTGATTCTGACACC
EV526158       --> TCACTTAAGCATCCTAATATCATCCGCTTCAAGGAGGTGATTCTGACACC
EX896167       --> TCACTTAAGCATCCTAATATCATCCGCTTCAAGGAGGTGATTCTGACACC
FD979746       --> TCACTTAAGCATCCTAATATCATCCGCTTCAAGGAGGTGATTCTGACACC
EW724531       --> TCACTTAAGCATCCTAATATCATCCGCTTCAAGGAGGTGATTCTGACACC
EX895009       --> TCACTTAAGCATCCTAATATCATCCGCTTCAAGGAGGTGATTCTGACACC
FD987051       --> TCACTTAAGCATCCTAATATCATCCGCTTCAAGGAGGTGATTCTGACACC
FD979006       --> TCACTTAAGCATCCTAATATCATCCGCTTCAAGGAGGTGATTCTGACACC
EX894502       --> ..................................................

               351    -    401
UN20461        --> TACTCATCTTGCTATTGTGATGGAGTATGCTGCTGGAGGAGAGCTCTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- ..................................................  Raphanus sativus var. oleiformis
FD983168       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW730055       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX898815       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW728583       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX888494       --> TACTCATCTTGCTATCGTGATGGAGTATGCTGCTGGAGGAGAGCTCTTTG  Raphanus sativus var. oleiformis
EW725607       --> TACTCATCTTGCTATTGTGATGGAGTATGCTGCTGGAGGAGAGCTCTTTG  Raphanus sativus cv Early Scarlet Globe
FD572510       --> TACTCATCTTGCTATTGTGATGGAGTATGCTGCTGGAGGAGAGCTCTTTG  Raphanus sativus cv Early Scarlet Globe
FD947921       --> TACTCATCTTGCTATTGTGATGGAGTATGCTGCTGGAGGAGAGCTCTTTG  Raphanus sativus cv Early Scarlet Globe
EV526158       --> TACTCATCTTGCTATTGTGATGGAGTATGCTGCTGGAGGAGAGCTCTTTG  Raphanus raphanistrum subsp. maritimus
EX896167       --> TACTCATCTTGCTATTGTGATGGAGTATACTGCTGGAGGAGAGCTCTTTG  Raphanus sativus cv Early Scarlet Globe
FD979746       --> TACTCATCTTGCTATCGTGATGGAGTATTCTGCTGGAGGAGAGCTCTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW724531       --> TACTCATCTTGCTATTGTGATGGAGTATGCTGCTGGAGGAGAGCTCTTTG  Raphanus sativus cv Early Scarlet Globe
EX895009       --> TACTCATCTTGCTATTGTGATGGAGTATGCTGCTGGAGGAGAGCTCTTTG  Raphanus sativus cv Early Scarlet Globe
FD987051       --> TACTCATCTTGCTATCGTGATGGAGTATGCTGCTGGAGGAGAGCTCTTTG  Raphanus raphanistrum subsp. landra
FD979006       --> TACTCATCTTGCTATCGTGATGGAGTATGCTGCTGGAGGAGAGCTCTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX894502       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               401    -    451
UN20461        --> ATCGAATCTGCACTTCTGGCCGATTCAGTGAAGCTGAGGCTAAGTACTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- ..................................................  Raphanus sativus var. oleiformis
FD983168       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW730055       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX898815       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW728583       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX888494       --> ATCGAATCTGCACTTCTGGTAGATTCAGTGAAGCTGAGGCTAAGTACTTC  Raphanus sativus var. oleiformis
EW725607       --> ATCGAATCTGCACTTCTGGCCGATTCAGTGAAGCTGAGGCTAAGTACTTC  Raphanus sativus cv Early Scarlet Globe
FD572510       --> ATCGAATCTGCACTTCTGGCCGATTCAGTGAAGCTGAGGCTAAGTACTTC  Raphanus sativus cv Early Scarlet Globe
FD947921       --> ATCGAATCTGCACTTCTGGCCGATTCAGTGAAGCTGAGGCTAAGTACTTC  Raphanus sativus cv Early Scarlet Globe
EV526158       --> ATCGAATCTGCACTTCTGGCCGATTCAGTGAAGCTGAGGCTAAGTACTTC  Raphanus raphanistrum subsp. maritimus
EX896167       --> ATCGAATCTGCACTTCTGGCCGATTCAGTGAAGCTGAGGCTAAGTACTTC  Raphanus sativus cv Early Scarlet Globe
FD979746       --> ATCGAATCTGCACTTCTGGTAGATTCAGTGAAGCTGAGGCTAAGTACTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW724531       --> ATCGAATCTGCACTTCTGGCCGATTCAGTGAAGCTGAGGCTAAGTACTTC  Raphanus sativus cv Early Scarlet Globe
EX895009       --> ATCGAATCTGCACTTCTGGCCGATTCAGTGAAGCTGAGGCTAAGTACTTC  Raphanus sativus cv Early Scarlet Globe
FD987051       --> ATCGAATCTGCACTTCTGGTAGATTCAGTGAAGCTGAGGCTAAGTACTTC  Raphanus raphanistrum subsp. landra
FD979006       --> ATCGAATCTGCACTTCTGGTAGATTCAGTGAAGCTGAGGCTAAGTACTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX894502       --> ..............................AAGCTGAGGCTAAGTACTTC  Raphanus sativus cv Early Scarlet Globe

               451    -    501
UN20461        --> TTTCAACAGCTGATTTGTGGTGTCGACTACTGCCACTCCTTGCAAATTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- ...............................................aTG  Raphanus sativus var. oleiformis
FD983168       <-- .................................................G  Raphanus raphanistrum subsp. landra
EW730055       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX898815       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW728583       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX888494       --> TTTCAACAGCTGATTTGTGGCGTCGACTACTGCCACTCCTTGCAAATATG  Raphanus sativus var. oleiformis
EW725607       --> TTTCAACAGCTGATTTGTGGTGTCGACTACTGCCACTCCTTGCAAATTTG  Raphanus sativus cv Early Scarlet Globe
FD572510       --> TTTCAACAGCTGATTTGTGGTGTCGACTACTGCCACTCCTTGCAAATTTG  Raphanus sativus cv Early Scarlet Globe
FD947921       --> TTTCAACAGCTGATTTGTGGTGTCGACTACTGCCACTCCTTGTAAATTTG  Raphanus sativus cv Early Scarlet Globe
EV526158       --> TTTCAACAGCTGATTTGTGGTGTCGACTACTGCCACTCCTTGCAAATTTG  Raphanus raphanistrum subsp. maritimus
EX896167       --> TT................................................  Raphanus sativus cv Early Scarlet Globe
FD979746       --> TTTCAACAGCTGATTTGTGGCGTCGACTACTGCCACTCCTTGCAAATATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW724531       --> TTTCAACAGCTGATTTGTGGTGTCGACTACTGCCACTCCTTGCAAATTTG  Raphanus sativus cv Early Scarlet Globe
EX895009       --> TTTCAACAGCTGATTTGTGGTGTCGACTACTGCCACTCCTTGCAAATTTG  Raphanus sativus cv Early Scarlet Globe
FD987051       --> TTTCAACAGCTGATTTGTGGCGTCGACTACTGCCACTCCTTGCAAATATG  Raphanus raphanistrum subsp. landra
FD979006       --> TTTCAACAGCTGATTTGTGGCGTCGACTACTGCCACTCCTTGCAAATATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX894502       --> TTTCAACAGCTGATTTGTGGTGTCGACTACTGCCACTCCTTGCAAATTTG  Raphanus sativus cv Early Scarlet Globe

               501    -    551
UN20461        --> CCACAGAGAT-CTGAAGCTTGAAAACACACTGCTTGATGGGAGCCCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- CCACAGAGAT-CTGAAGCTTGAAAACACACTGCTTGATGGGAGCCCTGCT
FD983168       <-- CCACAGAGAT-CTGAAGCTTGAAAACACACTGCTTGATGGGAGCC-TGCT
EW730055       <-- ..................................................
EX898815       <-- ..................................................
EW728583       <-- ..................................................
EX888494       --> CCACAGAGAT-CTGAAGCTTGAAAACACACTGCTTGATGGGAGCCCTGCT
EW725607       --> CCACAGAGAT-CTGAAGCTTGAAAACACACTGCTTGATGGGAGCCCTGCT
FD572510       --> CCACAGAGAT-CTGAAGCTTAAAAACACACTGCTTGATGGGAGCCCTGCT
FD947921       --> CCACAGAGAT-CTGAAGCTTGAAAACACACTGCTTGATGGGAGCCCTGCT
EV526158       --> CCACAGAGAT-CTGAAGCTTGAAAACACACTGCTTGATGGGAGCCCTGCT
EX896167       --> ..................................................
FD979746       --> CCACAGAGAC-CTGAAGCTTGAAAACACACTGCTTGATGGGAGCCCTGCT
EW724531       --> CCACAGAGAT-CTGAAGCTTGAAAACACACTGCTTGATGGGAGCCCTGCT
EX895009       --> CCACAGAGAT-CTGAAGCTTGAAAACACACTGCTTGATGGGAGCCCTGCT
FD987051       --> CCACAGAGAT-CTGAAGCTTGAAAACACACTGCTTGATGGGAGCCCTGCT
FD979006       --> CCACAGAGATTCTGAAGCTTGAAAACACACTGCTTGATGGGAGCCCTGCT
EX894502       --> CCACAGAAAT-CTGAAGCTTGAAAACACACTGCTTGATGGGAGCCCTGCT

               551    -    601
UN20461        --> CCGCTTTTGAAAATCTGTGACTTTGGTTACTCCAAGTCATCTATACTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- CCGCTTTTGAAAATCTGTGACTTTGGTTACTCCAAGTCATCTATACTACA  Raphanus sativus var. oleiformis
FD983168       <-- CCGCTTTTGAAAATCTGTGACTTTGGTTACTCTAAGTCATCTATACTACA  Raphanus raphanistrum subsp. landra
EW730055       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX898815       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW728583       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX888494       --> CCGCTTTTGAAAATCTGTGACTTTGGTTACTCCAAGTCATCTATACTACA  Raphanus sativus var. oleiformis
EW725607       --> CCGCTTTTGAAAATCTGTGACTTTGGTTACTCCAAGTCATCTATACTACA  Raphanus sativus cv Early Scarlet Globe
FD572510       --> CCGCTTTTGAAAATCTGTGACTTTGGTTACTCCAAGTCATCTATACTACA  Raphanus sativus cv Early Scarlet Globe
FD947921       --> CCGCTTTTGAAAATCTGTGACTTTGGTTACTCCAAGTCATCTATACTACA  Raphanus sativus cv Early Scarlet Globe
EV526158       --> CCGCTTTTGAAAATCTGTGACTTTGGTTACTCCAAGTCATCTATACTACA  Raphanus raphanistrum subsp. maritimus
EX896167       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD979746       --> CCGCTTTTGAAAATCTGTGACTTTGGTTACTCTAAGTCATCTATACTACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW724531       --> CCGCTTTTGAAAATCTGTGACTTTGGTTACTCCAAGTCATCTATACTACA  Raphanus sativus cv Early Scarlet Globe
EX895009       --> CCGCTTTTGAAAATCTGTGACTTTGGTTACTCCAAGTCATCTATACTACA  Raphanus sativus cv Early Scarlet Globe
FD987051       --> CCGCTTTTGAAAATCTGTGACTTTGGTTACTCTAAGTCATCTATACTACA  Raphanus raphanistrum subsp. landra
FD979006       --> CCGCTTTTGGAAATCTGTGACTTTGGTTACTCTAAGTCATCTATACTACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX894502       --> CCGCTTTTGAAAATCTGTGACTTTGGTTACTCCAAGTCATCTATACTAC.  Raphanus sativus cv Early Scarlet Globe

               601    -    651
UN20461        --> CTCTAGGCCTAAATCGACTGTTGGAACTCCAGCATACATAGCACCTGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- ATCTAGGCCTAAATCAACCGTTGGAACTCCATCATACATTGCACCTGAAG  Raphanus sativus var. oleiformis
FD983168       <-- CTCTAGGCCTAAATCAACCGTTGGAACTCCAGCGTACATAGCACCTGAAG  Raphanus raphanistrum subsp. landra
EW730055       <-- .............TCGACTGTTGGAACTCCAGCATACATAGCAC-TGAAG  Raphanus sativus cv Early Scarlet Globe
EX898815       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW728583       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX888494       --> ATCT..............................................  Raphanus sativus var. oleiformis
EW725607       --> CTCTAGGCCTAAATCGACTGTTGGAACTCCAGCATACATAGCACCTGAAG  Raphanus sativus cv Early Scarlet Globe
FD572510       --> CTCTAGGCCTAAATCGACTGTTGGAACTCCAGCATACATAGCACCTGAAG  Raphanus sativus cv Early Scarlet Globe
FD947921       --> CTCTAGGCCTAAATCGACTGTTGGAACTCCAGCATACATAGCACCTGAAG  Raphanus sativus cv Early Scarlet Globe
EV526158       --> CTCTAGGCCTAAATCGACTGTTGGAACTCCAGCATACATAGCACCTGAAG  Raphanus raphanistrum subsp. maritimus
EX896167       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD979746       --> CTCTAGGCCTAAATCAACCGTTGGAACTCTAGCGTACATAGCACCTGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW724531       --> CTCTAGGCCTAAATCGACTGTTGGAACTCCAGCATACATAGCACCTGAAG  Raphanus sativus cv Early Scarlet Globe
EX895009       --> CTCTAGGCCTAAATCGACTGTTGGAACTCCAGCATACATAGCACCTGAAG  Raphanus sativus cv Early Scarlet Globe
FD987051       --> CTCTAGGCCTAAATCAACCGTTGGAACTCCAGCGTACATAGCACCTGAAG  Raphanus raphanistrum subsp. landra
FD979006       --> CTCTAGGCCTAAATCAACCGTTGGAACTCCAGCGTACATAGCACCTGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX894502       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               651    -    701
UN20461        --> TTCTTTCCC-GGAGAGAATATGATGGCAAGCACGCTGATGTGTGGTCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- TTCTTTCCC-GGAGAGAATATGATGGCAAGCACGCTGATGTGTGGTTATG
FD983168       <-- TTCTTTCCC-GGAGAGAATATGATGGCAAGCACGCTGATGTGTGGTCATG
EW730055       <-- TTCTTTCCC-GGAGAGAATATGATGGCAAGCACGCTGATGTGTGGTCATG
EX898815       <-- ..................................................
EW728583       <-- ..................................................
EX888494       --> ..................................................
EW725607       --> TTCTTTCCC-GGA.....................................
FD572510       --> TTCTTTCCC-GGAGAGAATATGATGGCAAGCACGCTGATGTGTGGTCATG
FD947921       --> TTCTTTCCC-GGAGAGAATATGATGGCAAGCACGCTGATGTGTGGTCATG
EV526158       --> TTCTTTCCCCGGAGAGAATATGATGGCAAGCACGCTGATGTGTGGTCATG
EX896167       --> ..................................................
FD979746       --> TTCTTTCCC-GGAGAGAATATGATGGCAAGCACGCTGATGTGTGGTCATG
EW724531       --> TTCTTTCCC-GGAGAGAATATGATGGCAAGCACGCTGATGTGTGGTCATG
EX895009       --> TTCTTTCCC-GGAGAGAATATGATGGCAAGCACGCTGATGTGTGGTCATG
FD987051       --> TTCTTTCCC-GGAGAGAATATGATGGCAAGCACGCTGATGTGTGGTCATG
FD979006       --> TTCTTTCCC-GGAGAGAATATGATGGCAAGCACGCTGATGTGTGGTCATG
EX894502       --> ..................................................

               701    -    751
UN20461        --> TGG-AGTAACCCTATATGTGATGCTGGTTGGAGCTTACCCATTTGAGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- TGG-AGTAACCCTATATGTGATGCTGGTTGGAGCTTACCCATTTGAGGAT  Raphanus sativus var. oleiformis
FD983168       <-- TGG-AGTAACCCTTTATGTGATGCTGGTTGGAGCTTACCCATTTGAGGAT  Raphanus raphanistrum subsp. landra
EW730055       <-- TGG-AGTAACCCTATATGTGATGCTGGTTGGAGCTTACCCATTTGAGGAT  Raphanus sativus cv Early Scarlet Globe
EX898815       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW728583       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX888494       --> ..................................................  Raphanus sativus var. oleiformis
EW725607       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD572510       --> TGG-AGTAACCCTATATGTGATGCTGGTTGGAGCTTACC-ATTTGAGGAT  Raphanus sativus cv Early Scarlet Globe
FD947921       --> TGG-AGTAACCCTATATGTGATGCTGGTTGGAGCTTACC...........  Raphanus sativus cv Early Scarlet Globe
EV526158       --> TGGGAGTAACCCTATATGTGATGCTGGTTGGAGCTTACCCATTTGAGGAT  Raphanus raphanistrum subsp. maritimus
EX896167       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD979746       --> TGG-AGTAACCCTTTATGTGATGCTGGTTGGAGCTTACCCATTTGAGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW724531       --> TGG-AGTAACCCTATATGTGATGCTGGTTGGAGCTTACCCATTTGAGGAT  Raphanus sativus cv Early Scarlet Globe
EX895009       --> TGG-AGTAACCCTATATGTGATGCTGGTTGGAGCATACCCATTTGAGGAT  Raphanus sativus cv Early Scarlet Globe
FD987051       --> TGG-AGTAACCCTTTATGTGATGCTGGTTGGAGCTTACCCATTTGAGGAT  Raphanus raphanistrum subsp. landra
FD979006       --> TGG-AGTAACCCTTTATGTGATGCTGGTTGGAGCTTACCCATTTGAGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX894502       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               751    -    801
UN20461        --> CCTAATGATCCAAAGAACTTCAGGAAA-CAATCCAACGTATAATGGCTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- CCTAATGATCCAAAGAACTTCAGGAAAACAATCCAACGTATAATGGCTAC
FD983168       <-- CCTAATGATCCAAAGAACTTCAGGAAAACAATCCAACGTATAATGGCTAC
EW730055       <-- CCTAATGATCCAAAGAACTTCAGGAAAACAATCCAACGTATAATGGCTAC
EX898815       <-- ..................................................
EW728583       <-- ..................................................
EX888494       --> ..................................................
EW725607       --> ..................................................
FD572510       --> CCTAATGATCCAAAGA-CTTCAG-AAA-CAATCCAACGTATAATGG....
FD947921       --> ..................................................
EV526158       --> CCTAATGATCCAAAGAACTTC.............................
EX896167       --> ..................................................
FD979746       --> CCTAATGATCCAAAGAACTTCAG-AAA-CAATCCAACGTATAATGGCTAC
EW724531       --> CCTAATGATCCAAAGAACTTCGGAAGA-CAATCCAACGTATAATGGCTAC
EX895009       --> CCTAATGATCCAAAGAACTTCAGAAAA-CAATCCAACGTATAATGGCTAC
FD987051       --> CCTAATGATCCAAAGAACTTCAG-AAA-CAATCCAACGTATAATGGCTAC
FD979006       --> CCTAATGATCCAAAGAACTTCACGAAAACAATCCAACGTATAATGGCTAC
EX894502       --> ..................................................

               801    -    851
UN20461        --> ACAATACAAGATCCCGGACTACGTTCACTTATCTCAGGAATGCAAACACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- ACAATACAAGATCCCGGACTACGTTCACTTATCTCAGGAATGCAAACACC
FD983168       <-- ACAATACAAGATCCCGGACCACGTTCACTTATCTCAGGAATGCAAACACC
EW730055       <-- ACAATACAAGATCCCGGACTACGTTCACCTATCT--CGAATGCAAACACC
EX898815       <-- ..................................................
EW728583       <-- ..................................................
EX888494       --> ..................................................
EW725607       --> ..................................................
FD572510       --> ..................................................
FD947921       --> ..................................................
EV526158       --> ..................................................
EX896167       --> ..................................................
FD979746       --> ACAATACAAGATCCCGGACTACGTT.........................
EW724531       --> ..................................................
EX895009       --> ACAATACAAGATCCCGGACTACGTTCACCTATCTCAGGAATGCAAACACC
FD987051       --> ACAATACAAGAT......................................
FD979006       --> ACAATACAAGATCCCGGACTACGTTCACTTATCTC...............
EX894502       --> ..................................................

               851    -    901
UN20461        --> TTCTCTCTCGCATATTCGTCACTAACCCCGCTAAGAGAATCACGCTTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- TTCTCTCTCGCATATTCGTCACTAACCCCGCTAAGAGAATCACGCTTAAG
FD983168       <-- TTCTCTCTCGCATATTCGTCACTAACCCCGCTAAGAGAATCACGCTTAAG
EW730055       <-- TTCTCTCTCGCATATTCGTCACTAACCCCGCTAAGAGAATCACGCTTAAG
EX898815       <-- ..................................................
EW728583       <-- ..................................................
EX888494       --> ..................................................
EW725607       --> ..................................................
FD572510       --> ..................................................
FD947921       --> ..................................................
EV526158       --> ..................................................
EX896167       --> ..................................................
FD979746       --> ..................................................
EW724531       --> ..................................................
EX895009       --> TTCTCTCTCGCATAT-CGTCACTAACCCCGCTA-GAG-ATCACGCT....
FD987051       --> ..................................................
FD979006       --> ..................................................
EX894502       --> ..................................................

               901    -    951
UN20461        --> GAGATCAAGAATCATCCATGGTACACGAAGAATTTGCCAAAGGAGCTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- GAGATCAAGAATCATCCATGGTACACGAAGAATTTGCCAAAGGAGCTGGT
FD983168       <-- GAGATCAAGAATCATCCATGGTACACGAAGAATCTGCCAAAGGAGCTGGT
EW730055       <-- GAGATCAAGAATCATCCATGGTACACGAAGAATTTGCCAAAGGAGCTGGT
EX898815       <-- ..................................................
EW728583       <-- ..................................................
EX888494       --> ..................................................
EW725607       --> ..................................................
FD572510       --> ..................................................
FD947921       --> ..................................................
EV526158       --> ..................................................
EX896167       --> ..................................................
FD979746       --> ..................................................
EW724531       --> ..................................................
EX895009       --> ..................................................
FD987051       --> ..................................................
FD979006       --> ..................................................
EX894502       --> ..................................................

               951    -   1001
UN20461        --> AGAGTCGGCTCAAGCGGTGTATTACAAGAGAGACAACACGAGCTATTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- AGAGTCGGCTCAAGCGGTGTATTACAAGAGAGACAACACGAGCTATTCTC
FD983168       <-- AGAGTCGGCTCAAGCGGTGTATTACAAGAGAGACAACACGAGCTATTCTC
EW730055       <-- AGAGTCGGCTCAAGCGGTGTATTACAAGAGAGACAACACGAGCTATTCTC
EX898815       <-- ..................................................
EW728583       <-- ..................................................
EX888494       --> ..................................................
EW725607       --> ..................................................
FD572510       --> ..................................................
FD947921       --> ..................................................
EV526158       --> ..................................................
EX896167       --> ..................................................
FD979746       --> ..................................................
EW724531       --> ..................................................
EX895009       --> ..................................................
FD987051       --> ..................................................
FD979006       --> ..................................................
EX894502       --> ..................................................

               1001   -   1051
UN20461        --> TTCAGAGCATAGAGGACATAATGAAGATAGTTGGAGAAGCTAGGAATCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- TTCAGAGCATAGAGGACATAATGAAGATAGTTGGAGAAGCTAGGAATCTA
FD983168       <-- TTCAGAGCATAGAGGACATAATGAAGATAGTTGGAGAAGCTAGGAATCTA
EW730055       <-- TTCAGAGCATAGAGGACATAATGAAGATAGTTGGAGAAGCTAGGAATCTA
EX898815       <-- ............AGGACATAATGAAGATAGTTGGAGAAGCTAGGAATCTA
EW728583       <-- ..................................................
EX888494       --> ..................................................
EW725607       --> ..................................................
FD572510       --> ..................................................
FD947921       --> ..................................................
EV526158       --> ..................................................
EX896167       --> ..................................................
FD979746       --> ..................................................
EW724531       --> ..................................................
EX895009       --> ..................................................
FD987051       --> ..................................................
FD979006       --> ..................................................
EX894502       --> ..................................................

               1051   -   1101
UN20461        --> CCTTCATCTTCTAGTGTTAGCAAAAGCTTGGGATCAGGGGCTGAAGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- CCTTCATCTTCTAGTGTTAGCAAAAGCTTGGGATCAGGGGCTGAAGATGA
FD983168       <-- CCTTCATCTTCTAGTGTTAGCAAAAGCTTGGGATCAGGGGCTGAAGATGA
EW730055       <-- CCTTCATCTTCTAGTGTTAGCAAAAGCTTGGGATCAGGGGCTGAAGATGA
EX898815       <-- CCTTCATCTTCTAGTGTTAGCAAAAGCTTGGGATCAGGGGCTGAAGATGA
EW728583       <-- ...................................AGGGGCTGAAGATGA
EX888494       --> ..................................................
EW725607       --> ..................................................
FD572510       --> ..................................................
FD947921       --> ..................................................
EV526158       --> ..................................................
EX896167       --> ..................................................
FD979746       --> ..................................................
EW724531       --> ..................................................
EX895009       --> ..................................................
FD987051       --> ..................................................
FD979006       --> ..................................................
EX894502       --> ..................................................

               1101   -   1151
UN20461        --> AGATGAAGAGGACGTTGAAGAAGAAGAAGAAGA---TGAATACGAGAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- AGAGGAAGAGGACGTTGAAGAA------GAAGA---TGAATACGAGAAGC
FD983168       <-- AGATGAAGAGGACGTTGAAGAAGAAGAAGAAGAAGATGAATACGAGAAGC
EW730055       <-- AGATGAAGAGGACGTTGAAGAAGAAGAAGAAGA---TGAATACGAGAAGC
EX898815       <-- AGATGAAGAGGACGTTGAAGAAGAAGAAGAAGA---TGAATACGAGAAGC
EW728583       <-- AGATGAAGAGGACGTTGAAGAAGAAGAAGAAGA---TGAATACGAGAAGC
EX888494       --> ..................................................
EW725607       --> ..................................................
FD572510       --> ..................................................
FD947921       --> ..................................................
EV526158       --> ..................................................
EX896167       --> ..................................................
FD979746       --> ..................................................
EW724531       --> ..................................................
EX895009       --> ..................................................
FD987051       --> ..................................................
FD979006       --> ..................................................
EX894502       --> ..................................................

               1151   -   1201
UN20461        --> ATGTCAAAGAGGCACATTCTTCTTGTCAAGAGCCTGAGAAAGCTCAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- ATGTCAAAGAGGCACATTCTTCTTGTCAAGAGCCTGATAAAGCTCAAGAA
FD983168       <-- ATGTCAAAGAGGCACATTCTTCTTGTCAAGAACCTGAGAAAGCTCAAGAA
EW730055       <-- ATGTCAAAGAGGCACATTCTTCTTGTCAAGGGCCTGAGAAAGCTCAAGAA
EX898815       <-- ATGTCAAAGAGGCACATTCTTCTTGTCAAGAGCCTGAGAAAGCTCAAGAA
EW728583       <-- ATGTCAAAGAGGCACATTCTTCTTGTCAAGAGCCTGAGAAAGCTCAAGAA
EX888494       --> ..................................................
EW725607       --> ..................................................
FD572510       --> ..................................................
FD947921       --> ..................................................
EV526158       --> ..................................................
EX896167       --> ..................................................
FD979746       --> ..................................................
EW724531       --> ..................................................
EX895009       --> ..................................................
FD987051       --> ..................................................
FD979006       --> ..................................................
EX894502       --> ..................................................

               1201   -   1251
UN20461        --> GAAAGAAAGTGATCTGTTGCTCTAAACTACTTCGTACATGTTTATTTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- GAAAGAAAATGATCTGTTGCTCTAAACTACTTCGTACATGTT-ATTTCAC
FD983168       <-- GAAAGAAAGTGATCTGTTGCTCTAAACTACTTCGTACATGTT-ATTTCAC
EW730055       <-- GAAAGAAAGTGATCTGTTGCTCTAAACTACTTCGTACATGTTTATTTCAC
EX898815       <-- GAAAGAAAGTGATCTGTTGCTTTAAACTACTTCGTACATGTTTATTTCAC
EW728583       <-- GAAAGAAAGTGTTCTGTTGCTCTAAACTACTTCGTACATGTTTATTTCAC
EX888494       --> ..................................................
EW725607       --> ..................................................
FD572510       --> ..................................................
FD947921       --> ..................................................
EV526158       --> ..................................................
EX896167       --> ..................................................
FD979746       --> ..................................................
EW724531       --> ..................................................
EX895009       --> ..................................................
FD987051       --> ..................................................
FD979006       --> ..................................................
EX894502       --> ..................................................

               1251   -   1301
UN20461        --> TTTTCGATTTGATGT-----TACGTTCTCG-TTTCTTCAACTGTCTAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- TTTTCGATTTGATGTctg................................
FD983168       <-- TTTTCGATTTGATGTCTGCATACGTTCTCGTTTTCTTCAACTGTCTAGTG
EW730055       <-- TTTTCGATTTGATGT-----TACGTTCTCG-TTTCTTCAACTGTCTAGTG
EX898815       <-- TTTTCGATTTGATG....................................
EW728583       <-- TTTTCGATTTGATGT-----TACGTTCTCG-TTTCTTCAACTGTCTAGTG
EX888494       --> ..................................................
EW725607       --> ..................................................
FD572510       --> ..................................................
FD947921       --> ..................................................
EV526158       --> ..................................................
EX896167       --> ..................................................
FD979746       --> ..................................................
EW724531       --> ..................................................
EX895009       --> ..................................................
FD987051       --> ..................................................
FD979006       --> ..................................................
EX894502       --> ..................................................

               1301   -   1351
UN20461        --> GTTCTGAACATAACTCATAAAATGCCGTCGGATCTTCAGAGAGTGCTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- ..................................................
FD983168       <-- GTTCTGAACATAACcc..................................
EW730055       <-- GTTCTGAACATAACTCATAAAATGCCGTCGGATCTTCAGAGAGTGCTCTC
EX898815       <-- ..................................................
EW728583       <-- GTTCTG............................................
EX888494       --> ..................................................
EW725607       --> ..................................................
FD572510       --> ..................................................
FD947921       --> ..................................................
EV526158       --> ..................................................
EX896167       --> ..................................................
FD979746       --> ..................................................
EW724531       --> ..................................................
EX895009       --> ..................................................
FD987051       --> ..................................................
FD979006       --> ..................................................
EX894502       --> ..................................................

               1351   -   1401
UN20461        --> AAGTGATTAAGACAAGGGGTCAAAAATATTATGATGATAATAAAATGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892421       <-- ..................................................
FD983168       <-- ..................................................
EW730055       <-- AAGTGATTAAGACAAGGGGTCAAAAATATTATGATGATAATAAAATGATC
EX898815       <-- ..................................................
EW728583       <-- ..................................................
EX888494       --> ..................................................
EW725607       --> ..................................................
FD572510       --> ..................................................
FD947921       --> ..................................................
EV526158       --> ..................................................
EX896167       --> ..................................................
FD979746       --> ..................................................
EW724531       --> ..................................................
EX895009       --> ..................................................
FD987051       --> ..................................................
FD979006       --> ..................................................
EX894502       --> ..................................................

               1401   -   1451
UN20461        --> TCTCTGTTAAGC
                   ~~~~~~~~~~~~
EX892421       <-- ............
FD983168       <-- ............
EW730055       <-- TCTCTGTTAAGC
EX898815       <-- ............
EW728583       <-- ............
EX888494       --> ............
EW725607       --> ............
FD572510       --> ............
FD947921       --> ............
EV526158       --> ............
EX896167       --> ............
FD979746       --> ............
EW724531       --> ............
EX895009       --> ............
FD987051       --> ............
FD979006       --> ............
EX894502       --> ............