1      -     51
UN20533        --> GGACCAAAAAAGTCGTCTTCTCGTTTCTTT-TCTCAGTAGAGGAAAATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- ..................................................
FD547801       <-- ..................................................
FD949468       --> GGACCAAAAAAGTCGTCTTCTCGTTTCTTTCTCACAGTAGGGGAAAATGG
EV547824       --> ......ggagtcttcTCTTCTCGTTTCTTT-TCTCAGCAGAGGAAAATGG
FY453319       --> .................TTCTCGTTTCTTT-TCTCAGTAGAGGAAAATGG
FY451895       --> .................................ctcGTAGAGGAAAATGG
FD551964       --> ..................................................

               51     -    101
UN20533        --> ATTCTCGAAATCTTCTTCTCGCGTTATCGCTGTCTCTTATCCTGATTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- ..................................................
FD547801       <-- ..................................................
FD949468       --> ATTCTCGAAAT--T-TTCTCGCGTTATCGCTCTCTCTGATCCTGATTTTC
EV547824       --> ATTCTCGAAATTTTCTTCTCGCGTTATCGCTGTCTCTTATCCTGATTTTC
FY453319       --> ATTCTCGAAATCTTCTTCTCGCGTTATCGCTGTCTCTTATCCTGATTTTC
FY451895       --> ATTCTCGAAATCTTCTTCTCGCGTTATCGCTGTCTCTTATCCTGATTTTC
FD551964       --> ..................................................

               101    -    151
UN20533        --> CCTCCAATTTCGTCTGCTTCCATCAGATTCCTCCCTCGATGGAGTAGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- ..................................................
FD547801       <-- ..................................................
FD949468       --> CCTCCAATTTCGTCTGCTTCCATCAGATTCCTCCCTCGATGGAGTAGTAA
EV547824       --> CCTCCAATTTCGTCTGCTTCCATCAGATTCCTCCCTCGATGGAGTAGTAA
FY453319       --> CCTCCAATTTCGTCTGCTTCCATCAGATTCCTCCCTCGATGGAGTAGTAA
FY451895       --> CCTCCAATTTCGTCTGCTTCCATCAGATTCCTCCCTCGATGGAGTAGTAA
FD551964       --> ..................................................

               151    -    201
UN20533        --> TAACAGAGAAGGGTCAGTGATTAAGCAGAAGACAAGTGGTTCGTCTCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- ..................................................
FD547801       <-- ..................................................
FD949468       --> TAACAGAGAAGGGTCTTTGATTAAGCAGAAGACAAGTGGTTCGTCTCTAG
EV547824       --> TAACAGAGAAGGGTCAGTGATTAAGCAGAAGACAAGTGGTTCGTCTCAAG
FY453319       --> TAACAGAGAAGGGTCAGTGATTAAGCAGAAGACAAGTGGTTCGTCTCTAG
FY451895       --> TAACAGAGAAGGGTCAGTGATTAAGCAGAAGACAAGTGGTTCGTCTCTAG
FD551964       --> ...gAGAGAAGGGTCAGTGATTAAGCAGAAGACAAGTGGTTCGTCTCAAG

               201    -    251
UN20533        --> TTATTGATCCAAGTCGTGTCACTCAGCTCTCTTGGACTCCTAGGGTGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- ..................................................
FD547801       <-- ..................................................
FD949468       --> TTATCGGTCCAAGTCGTGTCACTCAGCTCTCTTGGACTCCTAGGGTGTTT
EV547824       --> TTATTGATCCAAGTCGTGTCACTCAGCTCTCTTGGACTCCTAGGGTGTTT
FY453319       --> TTATTGATCCAAGTCGTGTCACTCAGCTCTCTTGGACTCCTAGGGTGTTT
FY451895       --> TTATTGATCCAAGTCGTGTCACTCAGCTCTCTTGGACTCCTAGGGTGTTT
FD551964       --> TTATTGATCCAAGTCGTGTCACTCAGCTCTCTTGGACTCCTAGGGTGTTT

               251    -    301
UN20533        --> TTGTACAAGGGACTTCTTACTGATGAGGAATGTGATCATTTCATCAATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- ..GTACAAGGGACT-C-TACTGATGAGGAATGTGATCATT-CATCAATTT
FD547801       <-- ..................................................
FD949468       --> TTATACAAGGGACTTCTTACTGATGGGGAATGTGATCATTTCATCAATTT
EV547824       --> TTGTACAAGGGACTTCTTACTGATGAGGAATGTGATCATTTCATCAATTT
FY453319       --> TTGTACAAGGGACTTCTTACTGATGAGGAATGTGATCATTTCATCAATTT
FY451895       --> TTGTACAAGGGACTTCTTACTGATGAGGAATGTGATCATTTCATCAATTT
FD551964       --> TTGTA-AAGGGACTTCTTACTGATGAGGAATGTGATCATTTCATCAATTT

               301    -    351
UN20533        --> GGCGAAAGGGAAGCTTGAGAAGTCAATGGTTGCTGATAATGATTCAGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- GGCGAAAGGGAAGCTTGAGAAGTCAATGGTTGCTGATAATGATTCAGGTG
FD547801       <-- ..................................................
FD949468       --> GGCGAAAGGGAAGCTTGAGAAGTCAATGGTTGCTGATAATGATTCAGGTG
EV547824       --> GGCGAAAGGGAAGCTTGAGAAGTCAATGGTTGCTGATAATGATTCAGGTG
FY453319       --> GGCGAAAGGGAAGCTTGAGAAGTCAATGGTTGCTGATAATGATTCAGGTG
FY451895       --> GGCGAAAGGGAAGCTTGAGAAGTCAATGGTTGCTGATAATGATTCAGGTG
FD551964       --> GGCGAAAGGGAAGCTTGAGAAGTCAATGGTTGCTGATAATGATTCAGGTG

               351    -    401
UN20533        --> AGAGCGTGGAAAGTGAAGTGCGCACTAGTTCTGGAATGTTTCTTTCCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- AGAGCGTGGAAAGTGAAGTGCGCACTAGTTCTGGAATGTTTCTTTCCAAA
FD547801       <-- ..................................................
FD949468       --> AGAGCGTGGAAAGTGAAGTGCGCACTAGTTCTGGAATGTTTCTTTCCAAA
EV547824       --> AGAGCGTGGAAAGTGAAGTGCGCACTAGTTCTGGAATGTTTCTTTCCAAA
FY453319       --> AGAGCGTGGAAAGTGAAGTGCGCACTAGTTCTGGAATGTTTCTTTCCAAA
FY451895       --> AGAGCGTGGAAAGTGAAGTGCGCACTAGTTCTGGAATGTTTCTTTCCAAA
FD551964       --> AGAGCGTGGAAAGTGAAGTGCGCACTAGTTCTGGAATGTTTCTTTCCAAA

               401    -    451
UN20533        --> AGACAGGATGATGTAGTTGCTAATGTCGAGGCAAAACTTGCCGCGTGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- AGACAGGATGATGTAGTTGCTAATGTCGAGGCAAAACTTGCCGCGTGGAC
FD547801       <-- ..................................................
FD949468       --> AGACAGGATGATGTAGTTGCTAATGTCGAGGCAAAACTTGCTGCGTGGAC
EV547824       --> AGACAGGATGATGTAGTTGCTAATGTCGAGGCAAAACTTGCCGCGTGGAC
FY453319       --> AGACAGGATGATGTAGTTGCTAATGTCGAGGCAAAACTTGCCGCGTGGAC
FY451895       --> AGACAGGATGATGTAGTTGCTAATGTCGAGGCAAAACTTGCCGCGTGGAC
FD551964       --> AGACAGGATGATGTAGTTGCTAATGTCGAGGCAAAACTTGCCGCGTGGAC

               451    -    501
UN20533        --> CTTTCTTCCCGAGGAAAATGGAGAATCTATGCAAATATTGCACTACGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- CTTTCTTCCCGAGGAAAATGGAGAATCTATGCAAATATTGCACTACGAGA
FD547801       <-- ..................................................
FD949468       --> CTTTCTTCCCGAGGAAAATGGAGAATCTATGCAAATATTGCACTACGAGA
EV547824       --> CTTTCTTCCCGAGGAAAATGGAGAATCTATGCAAATATTGCACTACGAGA
FY453319       --> CTTTCTTCCCGAGGAAAATGGAGAATCTATGCAAATATTGCACTACGAGA
FY451895       --> CTTTCTTCCCGAGGAAAATGGAGAATCTATGCAAATATTGCACTACGAGA
FD551964       --> CTTTCTTCCCGAGGAAAATGGAGAATCTATGCAAATATTGCACTACGAGA

               501    -    551
UN20533        --> ATGGTCAGAAATATGAACCGCATTTTGACTACTTTCACGACCAAGTAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- ATGGTCAGAAATATGAACCGCATTTTGACTACTTTCACGACCAAGTAAAC
FD547801       <-- ..................................................
FD949468       --> ATGGTCAGAAATATGAACCGCATTTTGACTACTTTCACGACCAAGTAAAC
EV547824       --> ATGGTCAGAAATATGAACCGCATTTTGACTACTTTCACGACCAAGTAAAC
FY453319       --> ATGGTCAGAAATATGAACCGCATTTTGACTACTTTCACGACCAAGTAAAC
FY451895       --> ATGGTCAGAAATATGAACCGCATTTTGACTACTTTCACGACCAAGTAAAC
FD551964       --> ATGGTCAGAAATATGAACCGCATTTTGACTACTTTCACGACCAAGTAAAC

               551    -    601
UN20533        --> CTACAGCTTGGTGGTCATCGGATCGCCACTGTATTGATGTACTTGTCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- CTACAGCTTGGTGGTCATCGGATCGCCACTGTATTGATGTACTTGTCCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547801       <-- ......CTTGGTGGTCATCGGATCGCCACTGTATTGATGTACTTGTCCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949468       --> CTACAGCTTGGTGGTCATCGGATCGCCACTGTACTCATGTACTTGTCCAA  Raphanus sativus cv Early Scarlet Globe
EV547824       --> CTACAGCTTGGTGGTCATCGGATCGCCACTGTATTGATGTACTTGTCCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY453319       --> CTACAGCTTGGTGGTCATCGGATCGCCACTGTACTGATGTACTTGTCCAA  Raphanus sativus cv GSK3-1
FY451895       --> CTACAGCTTGGTGGTCATCGGATCGCCACTGTACTGATGTACTTGTCCAA  Raphanus sativus cv GSK3-1
FD551964       --> CTACAGCTTGGTGGTCATCGGATCGCCACTGTATTGATGTACTTGTCCAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN20533        --> CGTCGAAAAGGGTGGAGAAACTGTGTTTCCCATGTGGAA-GGGCGCAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- CGTCGAAAAGGGTGGAGAAACTGTGTTTCCCATGTGGAA-GGGCGCAACA
FD547801       <-- CGTCGAAAAGGGTGGAGAAACTGTGTTTCCCATGTGGAA-GGGCGCAACA
FD949468       --> CGT...............................................
EV547824       --> CGTCGAAAAGGGTGGAGAAACTGTGTTTCCCATGTGGAAAGGGCGCAACA
FY453319       --> CGTCGAAAAGGGTGGAGAAACTGTGTTTCCCATGTGGAA-GGGCGCAACA
FY451895       --> CGTCGAAAAGGGTGGAGAAACTGTGTTTCCCATGTGGAA-GGGCGCAACA
FD551964       --> CGTCGAAAAGGGTGGAGAAACTGTGTTTCCCATGTGGAA-GGGCGCAACA

               651    -    701
UN20533        --> GCTCAACCCAAAGACGATAGCTGGACCCAATGTGCCAAACAAGGTTATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- GCTCAACCCAAAGACGATAGCTGGACCCAATGTGCCAAACAAGGTTATGC
FD547801       <-- GCTCAACCCAAAGACGATAGCTGGACCCAATGTGCCAAACAAGGTTATGC
FD949468       --> ..................................................
EV547824       --> GCTCAACCCAAAGACGATAGCTGGACCCAATGTGCCAAACAAAGTTATGC
FY453319       --> GCTCAACCCAAAGACGATAGCTGGACCCAATGTGCCAAACAAGGTTATGC
FY451895       --> GCTCAACCCAAAGACGATAGCTGGACCCAATGTGCCAAACAAGGTTATGC
FD551964       --> GCTCAACCCAAAGACGATAGCTGGACCCAATGTGCCAAACAAGGTTATGC

               701    -    751
UN20533        --> AGTGAAACCGAGGAAAGGGGACGCATTGCTATTCTTCAATCTCCATCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- AGTGAAACCGAGGAAAGGGGACGCATTGCTATTCTTCAATCTCCATCCAA
FD547801       <-- AGTGAAACCGAGGAAAGGGGACGCATTGCTATTCTTCAATCTCCATCCAA
FD949468       --> ..................................................
EV547824       --> AGTGAAACCGAGGAAAGGGGACGCATTGCTATTCTTCA-TCTCCATCCAA
FY453319       --> AGTGAAACCGAGGAAAGGGGACGCATTGCTATTCTTCAATCTCCATCCAA
FY451895       --> AGTGAAACCGAGGAAAGGGGACGCATTGCTATTCTTCAATCTCCATCCAA
FD551964       --> AGTGAAACCGAGGAAAGGGGACGCATTGCTATTCTTCAATCTCCATCCAA

               751    -    801
UN20533        --> ATGCAACAACAGATCCGAGCAGCTTACATGGAAGCTGTCCAGTGGTTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- ATGCAACAACAGATCCGAGCAGCTTACATGGAAGCTGTCCAGTGGTTGAG
FD547801       <-- ATGCAACAACAGGTCCGAGCAGCTTACATGGAAGCTGTCCAGTGGTTGAG
FD949468       --> ..................................................
EV547824       --> -TGCAACAACAGATCCGAGCAGCTTACATGGAAGCTGTCCAGTGGTTGAG
FY453319       --> ATGCAACCACAGATCCGAGCAGCTTACATGGAAGCTGTCCAGTGGTTGAG
FY451895       --> ATGCAACCACAGATCCGAGCAGCTTACATGGAAGCTGTCCAGTGGTTGAG
FD551964       --> ATGCAACAACAGGTCCGAGCAGCTTACATGGAAGCTGTCCAGTGGTTGAG

               801    -    851
UN20533        --> GGAGAGAAATGGTCAGCAACCAGATGGATTCATGTGAAGTCATTCGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- GGAGAGAAATGGTCAGCA-GCAGATGGATTCATGTGAAGTCATTCGAAAG
FD547801       <-- GGAGAGAAATGGTCAGCAACCAGATGGATTCATGTGAAGTCATTCGAAAG
FD949468       --> ..................................................
EV547824       --> GGAGAGAA-TGGTCAGCA-GCAGATGGATTCATGTGAAGTCATTCGAA-G
FY453319       --> GGAGAGAAATGGTCAGCAACCAGATGGATTCATGT...............
FY451895       --> GGAGAGAAATGGTCAGCAACCAGATGGATTCATGTCAAGTCATTCGAAAG
FD551964       --> GGAGAGAAATGGTCAGCAA...............................

               851    -    901
UN20533        --> ACCTGTTTCCAGGACAACTGGGTGTGTGGACGAGAACGAGAGCTGCGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- ACCTGTTTCCAGGACAACTGGGTGTGTGGACGAGAACGAGAGCTGCGAGA
FD547801       <-- ACCTGTTTCCAGGACAACTGGGTGTGTGGACGAGAACAAGAGCTGCGAGA
FD949468       --> ..................................................
EV547824       --> ACCTGTTTCCAG-AC-ACTGGGTGTGTGGACGAGA-CGAGAGCTGCGAG.
FY453319       --> ..................................................
FY451895       --> ACCT..............................................
FD551964       --> ..................................................

               901    -    951
UN20533        --> AATGGGCAAAGGCAGGGGAATGTCAGAAGAATCCAACGTACATGATGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- AATGGGCAAAGGCAGGGGAATGTCAGAAGAATCCAACGTACATGATGGGT
FD547801       <-- AATGGGCAAAGGCAGGGGAATGTCAGAAGAATCCAACGTACATGATGGGT
FD949468       --> ..................................................
EV547824       --> ..................................................
FY453319       --> ..................................................
FY451895       --> ..................................................
FD551964       --> ..................................................

               951    -   1001
UN20533        --> TCAGAAACAGACCAAGGTTACTGCGGAAAGAGCTGCAAAGCCTGCTCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- TCAGAAACAGACCAAGGTTACTGCAGAAAGAGCTACAAAGCCTGCTCATC
FD547801       <-- TCAGAAACAGACCAAGGTTACTGCGGAAAGAGCTGCAAAGCCTGCTCATC
FD949468       --> ..................................................
EV547824       --> ..................................................
FY453319       --> ..................................................
FY451895       --> ..................................................
FD551964       --> ..................................................

               1001   -   1051
UN20533        --> TTAACAACAACCAAGTAAAAAAATCAAAGGTCTTATTAAAGGATTGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- TTAACAACAACCAAGTAAAAAAATCAAAGGTCTTATTAAAGGATTGAAAA
FD547801       <-- TTAACAACAACCAAGTAAAAAAATCAAAGGTCTTATTAAAGGATTGAAAA
FD949468       --> ..................................................
EV547824       --> ..................................................
FY453319       --> ..................................................
FY451895       --> ..................................................
FD551964       --> ..................................................

               1051   -   1101
UN20533        --> CTTTTTGTGTGTAGAGAAGAAACCTTTGGTCTATATAAGGAAATATGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- CTTTTTGTGTGTAGAGAAGAAACCTTTGGTCTATATAAGGAAATATGTTT
FD547801       <-- CTTTTTGTGTGTAGAGAAGAAACCTTTGGTCTATATAAGGAAATATGTTT
FD949468       --> ..................................................
EV547824       --> ..................................................
FY453319       --> ..................................................
FY451895       --> ..................................................
FD551964       --> ..................................................

               1101   -   1151
UN20533        --> GAACAAATAATAAAAAAGAATAATTATGATGCTATGTTCTTAATAAGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543627       <-- GAACAAATAATAAAAAAGAATAATTATGATGCTATGTTCTTAATAAGCAG
FD547801       <-- GAACAAATAATAAAAAAGAATAATTATGATGCTATGTTCTTAATAAGCAG
FD949468       --> ..................................................
EV547824       --> ..................................................
FY453319       --> ..................................................
FY451895       --> ..................................................
FD551964       --> ..................................................

               1151   -   1201
UN20533        --> CTTCTTGTTTCATGTTT
                   ~~~~~~~~~~~~~~~~~
EV543627       <-- CTTCTTGTTTCATGTTT
FD547801       <-- CTTCTTGTTTCATGT..
FD949468       --> .................
EV547824       --> .................
FY453319       --> .................
FY451895       --> .................
FD551964       --> .................