1      -     51
UN20631        --> GGGCTTCTTCATCCTCCACCGGTTAAACTAATCCACTGACGATAGTCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY935158       <-- GGGCTTCTTCATCCTCCACCGGTTAAACTAATCCACTGACGATAGTCAAG
EV543102       <-- ..................................................
EY939172       --> GGGCTTCTTCATCCTCCACCGGTTAAACTAATCCACTGACGATAGTCAAG
EV569968       --> ........ggATCCTCCACCGGTTAAACTAATCCACTGACGATAGTCAAG
EX746627       --> .......gggATCCTCCACCGGTTAAACTAATCCACTGACGATAGTCAAG
EV539271       --> ..................................................

               51     -    101
UN20631        --> GCCGAAACAACATCATCGAAGACTCACCGGAGATCGCTACG-ACTCAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY935158       <-- GCCGAAACAACATCATCGAAGACTCACCGGAGATCGCTACG-ACTCAACA
EV543102       <-- ..................................................
EY939172       --> GCCGAAACAACATCATCGAAGACTCACCGGAGATCGCTACG-ACTCAACA
EV569968       --> GCCGAAACAACATCATCGAAGACTCACCGGAGATCGCTACGGACTCAACA
EX746627       --> GCCGAAACAACATCATCGAAGACTCACCGGAGATCGCTACG-ACTCAACA
EV539271       --> ..................................................

               101    -    151
UN20631        --> CCATGAACCCTGAGAATCATCAGACCACCACCACTCACTCGAAAGTCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY935158       <-- CCATGAACCCTGAGAATCATCAGACCACCACCACTCACTCGAAAGTCATC
EV543102       <-- ..................................................
EY939172       --> CCATGAACCCTGAGAATCATCAGACCACCACCACTCACTCGAAAGTCATC
EV569968       --> CCATGAACCCTGAGAATCATCAGACCACCACCACTCACTCGAAAGTCATC
EX746627       --> CCATGAACCCTGAGAATCATCAGACCACCACCACTCACTCGAAAGTCATC
EV539271       --> ..................................................

               151    -    201
UN20631        --> TCACATGTCTTTTTCACCGGTACCGCCAAGCAAGGCAGTGCTGGGCCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY935158       <-- TCACATGTCTTTTTCACCGGTACCGCCAAGCAAGGCAGTGCTGGGCCACC
EV543102       <-- ..............CACCGGTACTGCCAAACAAGGCTGTGCTGGGCCACC
EY939172       --> TCACATGTCTTTTTCACCGGTACCGCCAAGCAAGGCAGTGCTGGGCCACC
EV569968       --> TCACATGTCTTTTTCACCGGAACCGCCAAGCAAGGCAGTGCTGGGCCACC
EX746627       --> TCACATGTCTTTTTCACCGGTACCGCCAAGCAAGGCAGTGCTGGGCCACC
EV539271       --> ..............CACCGGTACTGCCAAACAAGGCTGTGCTGGGCCACC

               201    -    251
UN20631        --> CCTTGGTCTTGTCGATATTGGTGTGAGCGACATTGCTTACATCTTCAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY935158       <-- CCTTGGTCTTGTCGATATTGGTGTGAGCGACATTGCTTACATCTTCAGAG  Raphanus sativus cv Early Scarlet Globe
EV543102       <-- CCTTGGTCTTGTCGATATTGGTGTGAGCGACATTGCCTACATCTTCAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY939172       --> CCTTGGTCTTGTCGATATTGGTGTGAGCGACATTGCTTACATCTTCAGAG  Raphanus sativus cv Early Scarlet Globe
EV569968       --> CCTTGGTCTTGTCGATATTGGTGTGAGCGACATTGCCTACATCTTCAGAG  Raphanus raphanistrum subsp. landra
EX746627       --> CCTTGGTCTTGTCGATATTGGTGTGAGCGACATTGCTTACATCTTCAGAG  Raphanus raphanistrum subsp. maritimus
EV539271       --> CCTTGGTCTTGTCGATATTGGTGTGAGCGACATTGCCTACATCTTCAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)

               251    -    301
UN20631        --> TCTCTCTCCCTGGCATGGCCAAAAATCAAGATAAGATCAAATGTGAGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY935158       <-- TCTCTCTCCCTGGCATGGCCAAAAATCAAGATAAGATCAAATGTGAGATT
EV543102       <-- TCTCTCTCCCTGGCATGGCCAAAAATCAAGACAAGATCAAATGTGAGATT
EY939172       --> TCTCTCTCCCTGGCATGGCCAAAAATCAAGATAAGATCAAATGTGAGATT
EV569968       --> TCTCTCTCCCTGGCATGGCCAAAAATCAAGATAAGATCAAATGTGAGATT
EX746627       --> TCTCTCTCCCTGGCATGGCCAAAAATCAAGATAAGATCAAATGTGAGATT
EV539271       --> TCTCTCTCCCTGGCATGGCCAAAAATCAAGACAAGATCAAATGTGAGATT

               301    -    351
UN20631        --> CAGAGAGAGGGAAGAGTATGCATACAAGGAGTAGTACCTGAGATTGCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY935158       <-- CAGAGAGAGGGAAGAGTATGCATACAAGGAGTAGTACCTGAGATTGCCAT
EV543102       <-- CAGAGAGAGGGAAGAGTATGCATACAAGGAGTAGTTCCTGAGATTGCCAT
EY939172       --> CAGAGAGAGGGAAGAGTATGCATACAAGGAGTAGTACCTGAGATTGCCAT
EV569968       --> CAGAGAGAGGGAAGAGTATGCATACAAGGAGTAGTACCTGAGATTGCCAT
EX746627       --> CAGAGAGAGGGAAGAGTATGCATACAAGGAGTAGTACCTGAGATTGCCAT
EV539271       --> CAGAGAGAGGGAAGAGTATGCATACAAGGAGTAGTTCCTGAGATTGCCAT

               351    -    401
UN20631        --> TCCAAGTGATTCAGGGTGCTTATACAGAATGCAAGTGCAGCAGCTCACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY935158       <-- TCCAAGTGATTCAGGGTGCTTATACAGAATGCAAGTGCAGCAGCTCACCC
EV543102       <-- TCCAAGTGATTCAGGGTGCTTATACAGAATGCAAGTGCAGCAGCTCACAC
EY939172       --> TCCAAGTGATTCAGGGTGCTTATACAGAATGCAAGTGCAGCAGCTCACCC
EV569968       --> TCCAAGTGATTCAGGGTGCTTATACAGAATGCAAGTGCAGCAGCTCACCC
EX746627       --> TCCAAGTGATTCAGGGTGCTTATACAGAATGCAAGTGCAGCAGCTCACCC
EV539271       --> TCCAAGTGATTCAGGGTGCTTATACAGAATGCAAGTGCAGCAGCTCACAC

               401    -    451
UN20631        --> CACCTGGTCCATTTTCTATCACGTTTAATCTCCCTGGACAAGTGGATCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY935158       <-- CACCTGGTCCATTTTCTATCACGTTTAATCTCCCAGGACAAGTGGATCCT  Raphanus sativus cv Early Scarlet Globe
EV543102       <-- CACCTGGTCCATTTTCTATCACGTTTAATCTCCCTGGACAAGTGGATCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY939172       --> CACCTGGTCCATTTTCTATCACGTTTAATCTCCCAGGACAAGTGGATCCT  Raphanus sativus cv Early Scarlet Globe
EV569968       --> CACCTGGTCCATTTTCTATCACGTTTAATCTCCCTGGACAAGTGGATCCT  Raphanus raphanistrum subsp. landra
EX746627       --> CACCTGGTCCATTTTCTATCACGTTTAATCTCCCAGGACAATTGGATCCT  Raphanus raphanistrum subsp. maritimus
EV539271       --> CACCTGGTCCATTTTCTATCACGTTTAATCTCCCTGGACAAGTGGATCCT  Raphanus raphanistrum subsp. raphanistrum (MS)

               451    -    501
UN20631        --> CGCTTGTTTTCTCCAAAGTTTAGACCTGATGGGATCTTCGAAGTTGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY935158       <-- CGCTTGTTTTCTCCAAAGTTTAGACCTGATGGGATCTTCGAAGTTGTTGT
EV543102       <-- CGCTTGTTTTCTCCAAAGTTTAGACCTGATGGGATCTTCGAAGTTGTTGT
EY939172       --> CGCTTGTTTTCTCCAAAGTTTAGACCTGATGGGATCTTCGAAGTTGTTGT
EV569968       --> CGCTTGTTTTCTCCAAAGTTTAGACCTGATGGGATCTTCGAAGTTGTTGT
EX746627       --> CGCTTGTTTTCTCCAAAGTTTAGACCTGATGGGATCTTCGAAGTTGTTGT
EV539271       --> CGCTTGTTTTCTCCAAAGTTTAGACCTGATGGGATCTTCGAAGTTGTTGT

               501    -    551
UN20631        --> CGTCAAGCTCGGTGTACGCATCCCAACGTCATAGCTCGGTTCTTTTT-CC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY935158       <-- CGTCAAGCTCGGTGTACGCATCCCAACGTCATAGCTCGGTTCTTTTT-CC
EV543102       <-- CGTCAAGCTCGGTGTACGCATCCCCACGTCATAGCTCGGTTCTTTTTTCC
EY939172       --> CGTCAAGCTCGGTGTACGCATCCCAACGTCATAGCTCGGTTCTTTTT-CC
EV569968       --> CGTCAAGCTCGGTGTACGCATCCCAACGTCATAGCTCGGTTCTTTTT-CC
EX746627       --> CGTCAAGCTCGGTGTACGCATCCCAACGTCATAGCTCGGTTCTTTTT-CC
EV539271       --> CGTCAAGCTCGGTGTACGCATCCCCACGTCATAGCTCGGTTCTTTTTTCC

               551    -    601
UN20631        --> ATTAACTAAGTTATGCTCGATTGTGTTGTGTAGAAACATGTTCACAGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY935158       <-- ATTAACTAAGTTATGCTCGATTGTGTTGTGTAGAAACATGTTCACAGTGT
EV543102       <-- ATTAACTAAGTTATGTTCGATTGTTTTGTGTAGAAACATGTTCACAGTGT
EY939172       --> ATTAACTAAGTTATGCTCGATTGTGTTGTGTAGAAACATGTTCACAGTGT
EV569968       --> ATTAACTAAGTTATGCTCGATTG-GTTGTGCAGAAACATGTTCACAGTTT
EX746627       --> ATTAACTAAGTTATGCTCGATTGTGTTGTGTAGAAACATGTTCACAGTGT
EV539271       --> ATTAACTAAGTTATGTTCGATTGTTTTGTGTAGAAACATGTTCACAGTGT

               601    -    651
UN20631        --> TCCCTATTTCTTGAAGATGCTCTTGAACTGTGAAAGTAGTTAGATGTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY935158       <-- TCCCTATTTCTTGAAGATGCTCTTGAACTGTGAAAGTAGTTAGATGTGAA
EV543102       <-- TCCCGATTTCTCGAAGATGCTCTTGAACTGTGAAAGTAGTTAGATGTGAA
EY939172       --> TCCCTATTTCTTGAAGATGCTCTTGAACTGTGAAAGTAGTTAGATGTGAA
EV569968       --> TCTCAATTTCTTGAAGATGCTCTTGAACTGTGAAAGTAGTTAGATGTGAA
EX746627       --> TCCCTATTTCTTGAAGATGCTCTTGAACTG....................
EV539271       --> TCCCGATTTCTCGAAGATGCTCTTGAACTGTGAAAGTAGTTAGATGTGAA

               651    -    701
UN20631        --> ACTGGTACTGTTTTGAGCAATTTAATACTCCCCCCCCCCCATTTTGACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY935158       <-- ACTGGTACTGTTTTGAGC................................
EV543102       <-- ACTGGTACTGTTTTGAGCAATTTAATACTCCCtccattttgac.......
EY939172       --> ACTGGTACTGTTTTGAGC................................
EV569968       --> ACTGGTACTGTTTTGAGCACTTTAATACTCCCCCCCCCCCATTTTGACAT
EX746627       --> ..................................................
EV539271       --> ACTGGTACTGTTTTGAGCAATTTAATACTCCCtccattttgac.......

               701    -    751
UN20631        --> T
                   ~
EY935158       <-- .
EV543102       <-- .
EY939172       --> .
EV569968       --> T
EX746627       --> .
EV539271       --> .