1      -     51
UN20650        --> CGGAGTCAAGATGCGTGTTCATTTTCTTTTAAAAATACTAAAAATACAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- ..................................................
EW723908       <-- ..................................................
EY937956       <-- ..................................................
EX755930       <-- ..................................................
FD550493       <-- ..................................................
EW729064       --> CGGAGTCAAGATGCGTGTTCATTTTCTTTTAAAAATACTAAAAATACAAC
FD546444       --> ..GAGTCAAGATGCGTGTTCATTTTCTTTTAAAAATACTAAAAATACAAC
EV574197       --> ..................................................

               51     -    101
UN20650        --> AAACGTAGTGGAAGTATAGTGCAAAAGGTCAATGACACTAGAGAGAGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- ....................................ACTAGAGAGAGTAA
EW723908       <-- ..................................................
EY937956       <-- ..................................................
EX755930       <-- ..................................................
FD550493       <-- ..................................................
EW729064       --> AAACGTAGTGGAAGTATAGTGCAAAAGGTCAATGACACTAGAGAGAGTAA
FD546444       --> AAACGTAGTGGAAGTATAGTGCAAAAGGTCAATGACACTAGAGAGAGTAA
EV574197       --> ..................................................

               101    -    151
UN20650        --> TCATTTAAGAAATTAACAAACATATTTATATACTAGCATACTGTATATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- TCATTTAAGAAATTAACAAACATATTTATATACTAGCATACTGTATATTA
EW723908       <-- ..................................................
EY937956       <-- ..................................................
EX755930       <-- ..................................................
FD550493       <-- ..................................................
EW729064       --> TCATTTAAGAAATTAACAAACATATTTATATACTAGCATAATGTATATTA
FD546444       --> TCATTTAAGAAATTAACAAACATATTTATATACTAGCATACTGTATATTA
EV574197       --> ..................................................

               151    -    201
UN20650        --> ATTATTGTAGAAAGCAACGTTTAAAGCATGTCGTGGTTCCAAGGGAATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- ATTATTGTAGAAAGCAACGTTTAAAGCATGTCGTGGTTCCGAGGAAATGG
EW723908       <-- ........AGAAAGCAACGTTTAAAGCATGTCGTGGTTCCAAGGGAATGG
EY937956       <-- ..................................................
EX755930       <-- ..................................................
FD550493       <-- ..................................................
EW729064       --> ATTATTGTAGAAAGCAACGTTTAAAGCATGTCGTGGTTCCAAGGGAATGG
FD546444       --> ATTATTGTAGAAAGCAACGTTTAAAGCATGTCGTGGTTCCAAGGAAATGG
EV574197       --> ..................................................

               201    -    251
UN20650        --> AGATAAGCCAAACGCAAAACGAACGTTGATGTATTGGAAGGTGAAATGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- AGATAAGCCAAACGCAAAACGAACGTTGATGTATTGGAAGGTGAAATGGT
EW723908       <-- AGATAAGCCAAACGCAAAACGGACGTTGATGTAT-GGAAGGTGAAATGGT
EY937956       <-- ......GCCAAACGCAAAACGAACGTTGATGTATTGGAAGGTGAAATGGT
EX755930       <-- ..................................................
FD550493       <-- ..................................................
EW729064       --> AGATAAGCCAAACGCAAAACGAACGTTGATGTATTGGAAGGTGAAATGGT
FD546444       --> AGATAAGCCAAACGCAAAACGAACGTTGATGTATTGGAAGGTGAAATGGT
EV574197       --> ..................................................

               251    -    301
UN20650        --> CATTTGGTTTCAAGTCCCAATCAGCAAGAGATAAGAGTTTCGTTTAGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- CATTTGGTTTCAAGTCCCAATCAGCAAGAGATAAGAGTTTCGTTTAGGCT
EW723908       <-- CATTTGGTTTCAAGTCCCAATCAGCAAGAGATAAGAGTTTCGTTTAGGCT
EY937956       <-- CATTTGGTTTCAAGTCCCAATCAGCAAGAGATAAGAGTTTCGTTTAGGCT
EX755930       <-- ................................................CT
FD550493       <-- ..................................................
EW729064       --> CATTTGGTTTCAAGTCCCAATCAGCAAGAGATAAGAGTTTCGTTTAGGCT
FD546444       --> CATTTGGTTTCAAGTCCCAATCAGCAAGAGATAAGAGTTTCGTTTAGGCT
EV574197       --> ..................................................

               301    -    351
UN20650        --> GATGTCGGGA---AGTAAGGAGATGTTGATACTAATCTCTCTTTGCGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- GATGTCGGGAGGAAGTAAGGAGATGTTGATACTAATCTCTCTTTGCGCTT
EW723908       <-- GATGTCGGGA---AGTAAGGAGATGTTGATACTAATCTCTCTTTGTGCTT
EY937956       <-- GATGTCGGGA---AGTAAGGAGATGTTGATACTAATCTCTCTTTGCGCTT
EX755930       <-- GATGTCGGGA---AGTAAGGAGATGTTGATACTAATCTCTCTT-GCGCTT
FD550493       <-- ..................................................
EW729064       --> GATGTCGGGA---AGTAAGGAGATGTTGATACTAATCTCTCTTTGTGCTT
FD546444       --> GATGTCGGGAGGAAGTAAGGAGATGTTGATACTAATCTCTCTTTGCGCTT
EV574197       --> ..................................................

               351    -    401
UN20650        --> CTCAAGAAACCTTTGCAGTGACTTTGTCCTTTGGATGGGAAGATCTCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- CTCAAGAAACCTTTGCAGTGACTTTGTCCTTTGGATGGGAAGATCTCCTT
EW723908       <-- CTCAAGAAACCTTTGCAGTGACTTTGTCCTTTGGATGGGAAGATCTCCTT
EY937956       <-- CTCAAGAAACCTTTGCAGTGACTTTGTCCTTTGGATGGGAAGATCTCCTT
EX755930       <-- CTCAAGAAACCTTTGCAGTGACTTTGTCCTTTGGATGGGAAGATCTCCTT
FD550493       <-- ..................................................
EW729064       --> CTCAAGAAACCTTTGCAGTGACTTTGTCCTTTGGATGGGAAGATCTCCTT
FD546444       --> CTCAAGAAACCTTTGCAGTGACTTTGTCCTTTGGATGGGAAGATCTCCTT
EV574197       --> ..................................................

               401    -    451
UN20650        --> CTAGATTCTGGCCAAAGAGCTTTGTCCTTATGGTGGTCGGAGGAATTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- CTAGATTCTGGCCAAAGAGCTTTGTCCTTATGGTGGTCGGAGGAATTACC
EW723908       <-- CTAGATTCTGGCCAAAGAGCTTTGTCCTTATGGTGGTCGGAGGAATTACC
EY937956       <-- CTAGATTCTGGCCAAAGAGCTTTGTCCTTATGGTGGTCGGAGGAATTACC
EX755930       <-- CTAGATTCTGGCCAAAGAGCTTTGTCCTTATGGTGGTCGGAGGAATTACC
FD550493       <-- ..AGATTCTGGCCAAAGAGCTTTGTCCTTATGGTGGTCGGAGGAATTACC
EW729064       --> CTAGATTCTGGCCAAAGAGCTTTGTCCTTATGGTGGTCGGAGGAATTACC
FD546444       --> CTAGATTCTGGCCAAAGAGCTTTGTCCTTATGGTGGTCGGAGGAATTACC
EV574197       --> ..................................................

               451    -    501
UN20650        --> GAATGATTTTTCACAATCGATTTGTCTTTCTTTGGTGCTGTTTCCATGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- GAATGATCTTTCACAATCGATTTGTCTTTTTTTGGTGCTGTTTCCATGAC  Raphanus raphanistrum subsp. landra
EW723908       <-- GAATGATTTTTCACAATCGATTTGTCTTTCTTTGGTGCTGTTTCCATGAC  Raphanus sativus cv Early Scarlet Globe
EY937956       <-- GAATGATTTTTCACAATCGATTTGTCTTTCTTTGGTGCTGTTTCCATGAC  Raphanus sativus cv Early Scarlet Globe
EX755930       <-- GAATGATTTTTCACAATCGATTTGTCTTTCTTTGGTGCTGTTTCCATGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD550493       <-- GAATGATCTTTCACAATCGATTTGTCTTTTTTTGGTGCTGTTTCCATGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729064       --> GAATGATTTTTCACAATCGATTTGTCTTTCTTTGGTGCTGTTTCCATGAC  Raphanus sativus cv Early Scarlet Globe
FD546444       --> GAATGATCTTTCACAATCGATTTGTCTTTTTTTGGTGCTGTTTCCATGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574197       --> ..................................................  Raphanus raphanistrum subsp. landra

               501    -    551
UN20650        --> AACCTTCAGAATATCATCAGCCTTGTTAGGAGACACTTGGTAAACGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- AACCTTCAGAATATCATCGGCCTTGTTAGGAGACATTTGGTAAACGGAGA  Raphanus raphanistrum subsp. landra
EW723908       <-- AACCTTCAGAATATCATCAGCCTTGTTAGGAGACACTTGGTAAACGGAGA  Raphanus sativus cv Early Scarlet Globe
EY937956       <-- AACCTTCAGAATATCATCAGCCTTGTTAGGAGACACTTGGTAAACGGAGA  Raphanus sativus cv Early Scarlet Globe
EX755930       <-- AACCTTCAGAATATCATCAGCCTTGTTAGGAGACACTTGGTAAACGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD550493       <-- AACCTTCAGAATATCATCGGCCTTGTTAGGAGACATTTGGTAAACGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729064       --> AACCTTCAGAATATCATCAGCCTTGTTAGGAGACACTTGGTAAACGGAGA  Raphanus sativus cv Early Scarlet Globe
FD546444       --> AACCTTCAGAATATCATCGGCCTTGTTAGGAGACATTTGGTAAACGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574197       --> ..................................................  Raphanus raphanistrum subsp. landra

               551    -    601
UN20650        --> CGGTTCCATTGTAGAAGATGGTCATAGGAACAGTTCCAGAGACGAGTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- CGGTTCCATTGTAGAAGATGGTCATAGGAACAGTTCCAGAGACGAGTTCC
EW723908       <-- CGGTTCCATTGTAGAAGATGGTCATAGGAACAGTTCCAGAGACGAGTTCC
EY937956       <-- CGGTTCCATTGTAGAAGATGGTCATAGGAACAGTTCCAGAGACGAGTTCC
EX755930       <-- CGGTTCCATTGTAGAAGATGGTCATAGGAACAGTTCCAGAGACGAGTTCC
FD550493       <-- CGGTTCCATTGTAGAAGATGGTCATAGGAACAGTTCCAGAGACGAGTTCC
EW729064       --> CGGTTCCATTGTAGAAGATGGTCATAGGAACAGTTCCAGAGACGAGTTCC
FD546444       --> CGGTTCCATTGTAGAAGATGGTCATAGGAACAGTTCCAGAGACGAGTTCC
EV574197       --> ..................................................

               601    -    651
UN20650        --> GTAGGCATGTTGAGAGGCGCTTGGACCGGAGAAATAGGGATCTGAGGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- GTAGGCATGTTGAGAGGCGCTTGGACCGGAGAAATAGGGATCTGAGGATG  Raphanus raphanistrum subsp. landra
EW723908       <-- GTAGGCATGTTGAGAGGCGTTTGGACCGGAGAAATAG.............  Raphanus sativus cv Early Scarlet Globe
EY937956       <-- GTAGGCATGTTGAGAGGCGTTTGGACCGGAGAAATAGGGATCTGAGAATG  Raphanus sativus cv Early Scarlet Globe
EX755930       <-- GTAGGCATGTTGAGAGGCGCTTGGACCGGAGAAATAGGGATCTGAGGA..  Raphanus raphanistrum subsp. raphanistrum (MS)
FD550493       <-- GTAGGCATGTTGAGAGGCGCTTGGACCGGAGAAATAGGGATCTGAGGATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729064       --> GTAGGCATGTTGAGAGGCGTTTGGACCGGAGAAATAGGGATCTGAGAATG  Raphanus sativus cv Early Scarlet Globe
FD546444       --> GTAGGCATGTTGAGAGGCGCTTGGA.........................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574197       --> ..................................................  Raphanus raphanistrum subsp. landra

               651    -    701
UN20650        --> ATCTGCCTTTGGAGTAGACGGAACCGAAGGAGATATAGTCGATGAATCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- ATATGCCTTTGGAGTAGACGGAACCGAAGGAGATATAGTCGATGAATCTG
EW723908       <-- ..................................................
EY937956       <-- ATCTGCCTTTGGAGTAGACGGAACCGAAGGAGATATAGTCGATGAATCTG
EX755930       <-- ..................................................
FD550493       <-- ATATGCCTTTGGAGTAGACGGAACCGAAGGAGATATAGTCGATGAATCTG
EW729064       --> ATCTGCCTTTGGAGTAGACGGAACCGAAGGAGATATAGTCGATGAATCTG
FD546444       --> ..................................................
EV574197       --> ................................ATATAGTCGATGAATCTG

               701    -    751
UN20650        --> CATGGTCAGCACCAGAAGCTAACAATGATTTGATAATCTCCGG-ATTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- CATGGTCAGCACCAGAAGCTAACAATGATTTGATAATCTCCGG-ATTGAT
EW723908       <-- ..................................................
EY937956       <-- CATGGTCAGCACCAGAAGCTAACAATGATTTGATAATCTCCGG-ATTGAT
EX755930       <-- ..................................................
FD550493       <-- CATGGTCAGCACCAGAAGCTAACAATGATTTGATAATCTCCGG-ATTGAT
EW729064       --> CATGGTCAGCACCAGAAGCTAACAATGATTTGATAATCTCCGG-ATTGAT
FD546444       --> ..................................................
EV574197       --> CATGGTCAGCACCAGAAGCTAACAATGATTTGATAATCCCCGGGATTGAT

               751    -    801
UN20650        --> CTTAGAAATGGCACCTTGAATATCTCGGAAACTGCGACGACGGTCGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- CTTAGAAATGGCACCTTGAATATCTCGGAAACTGCGACGACGGTCGAGAA
EW723908       <-- ..................................................
EY937956       <-- CTTAGAAATGGCACCTTGAATATCTCGGAAACTGCGACGACGGTCGAGAA
EX755930       <-- ..................................................
FD550493       <-- CTTAGAAATGGCACCTTGAATATCTCGGAAACTGCGACGACGGTCGAGAA
EW729064       --> CTTAGAAATGGCACCTTGAATATCTCGGAAACTGCGACGACGGTCGAGAA
FD546444       --> ..................................................
EV574197       --> CTTAGAAATGGCACCTTGAATATCTCGGAAACTGCGACGACGGTCGAGAA

               801    -    851
UN20650        --> ATTTCTTGAACTTAGGCTTTGGAATGTTGTTGGTCTGCTTCTTCTCAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- ATTTCTTGAACTTAGGCTTCGGAACGTTGTTGGTCTGCTTCTTCTCAAGA
EW723908       <-- ..................................................
EY937956       <-- ATTTCTTGAACTTAGGCTTTGGAATGTTGTTGGTCTGCTTCCTCTCAAGA
EX755930       <-- ..................................................
FD550493       <-- ATTTCTTGAACTTAGGCTTCGGAACGTTGTTGGTCTGCTTCTTCTCAAGA
EW729064       --> ATTTCTTGAACTTAG-CTTTGGAATGTTGTTGGTCTGCTTCTTCTCAAGA
FD546444       --> ..................................................
EV574197       --> ATTTCTTGAAC.......................................

               851    -    901
UN20650        --> CCGAAGAAGTCGAGCTCTGTGGTAACTCTAGACATCTTTGATCTGATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- CCGAAGAAGTCGAGCTCTGTGGTAACTCTAGACATCTTTGATCTGATCTT
EW723908       <-- ..................................................
EY937956       <-- CCGAAGA-GTCGAGCTCTGTGGTAACTCTGGACATCTTTGATCTGATCTT
EX755930       <-- ..................................................
FD550493       <-- CCGAAGAAGTCGAGCTCTGTGGTAACTCTAGACATCTTTGATCTGATCTT
EW729064       --> CCG...............................................
FD546444       --> ..................................................
EV574197       --> ..................................................

               901    -    951
UN20650        --> TCTTGCTAGCTAAAACAGAGATGGAGAGGAAAGAGAGAAATGAAGGATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- TCTTGCTAGCTAAAACAGAGATcc..........................
EW723908       <-- ..................................................
EY937956       <-- TCTTGCTAGCTAAAACAGAGATGGAGAGGAAAGAGAGAAATGAAGGATAT
EX755930       <-- ..................................................
FD550493       <-- TCTTGCTAGCTAAAACAGAGATGGAGAGGAAAGAGAGAAATGAAGGATAT
EW729064       --> ..................................................
FD546444       --> ..................................................
EV574197       --> ..................................................

               951    -   1001
UN20650        --> GTTTTTTTAGATGGAGAGGCTTGAGAGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569723       <-- ..............................
EW723908       <-- ..............................
EY937956       <-- cc............................
EX755930       <-- ..............................
FD550493       <-- GTTTTTTTAGATGGAGAGGCTTGAGAGGCC
EW729064       --> ..............................
FD546444       --> ..............................
EV574197       --> ..............................