Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN20724

               1      -     51
UN20724        --> ATACTTTAAACACAGGAAGGAGCTTTTATTGACCTTGAGAATGTACAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- ..................................................
EW716940       <-- ..................................................
EX760641       --> ATACTTTAAACACAGGAAGGAGCTTTTATTGACCTTGAGAATGTACAACG
EW721378       --> ...CTTTAA-CACAGGAAGGAGCTTTTATTGACCTTGAGAATGTACAACG
EV571508       --> .......AAACACAGGAAGGAGCTTTTATTGGCCTTGAGAATGTACAACG
FD968277       --> .......AAACACAGGAAGGAGCTTTTATTGACCTTGAGAATGTACAACG
EV572233       --> ..................................................

               51     -    101
UN20724        --> GAAGAATAACAGAGAACAAAACAAATCTTATAACTTAAAGAGAGGAATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- ............cGAACAAAACAAATCTTATAACTTAAAGAGAGGAATTG
EW716940       <-- ..................................................
EX760641       --> GAAGAATAACAGAGAACAAAACAAATCTTATAACTTAAAGAGAGGAAATG
EW721378       --> GAAGAATAACAGAGAACAAAACAAATCTTATAACTTAAAGAGAGGAATTG
EV571508       --> GAAGAATAACAGAGAACAAAACAAATCTTATAAATTAAAGAGAGGAATTG
FD968277       --> GAAGAATAACAGAGAACAAAACAAATCTTATAACTTAAAGAGAGGAAATG
EV572233       --> ............cGAACAAAACAAATCTTATAACTTAAAGAGAGGAATTG

               101    -    151
UN20724        --> CAACAAGCATACACACAATCATATTGGATGTTTAGTGTTTTTCCCTTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- CAACAAGCATACACACAATCATATTGGATGTTTAGTGTTTTTCCCTTAGA
EW716940       <-- ..................................................
EX760641       --> CAACAAGCATACACACAATCATATTGGATGTTTAGTGTTTTTCCCTTAGA
EW721378       --> CAACAAGCATACACACAATCATATTGGATGTTTAGTGTTTTTCCCTTAGA
EV571508       --> CAACAAGCATACACACAATCATATTGGATGTTTAGTGTTTTTCCCTTAGA
FD968277       --> CAACAAGCATACACACAATCATATTGGATGTTTAGTGTTTTTCCCTTAGA
EV572233       --> CAACAAGCATACACACAATCATATTGGATGTTTAGTGTTTTTCCCTTAGA

               151    -    201
UN20724        --> CTCTTGACCTCCTGCACTCAGGAGGGAATCCTCTAGGGAACCTTTTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- CTCTTGACCTCCTGCACTCAGGAGGGAATCCTCTAGGGAACCTTTTGAGA
EW716940       <-- ..................................................
EX760641       --> CTCTTGACCTCCTGCACTCAGGAGGGAATCCTCTAGGGAACCTTTTGAGA
EW721378       --> CTCTTGACCTCCTGCACTCAGGAGGGAATCCTCTAGGGAACCTT--GAGA
EV571508       --> CTCTTGACCTCCTGCACTCAGGAGGGAATCCTCTAGGGAACCTTTTGAGA
FD968277       --> CTCTTGACCTCCTGCACTCAGGAGGGAATCCTCTAGGGAACCTTTTGAGA
EV572233       --> CTCTTGACCTCCTGCACTCAGGAGGGAATCCTCTAGGGAACCTTTTGAGA

               201    -    251
UN20724        --> TCAGAGCAATAATTATAGATCATGAAGTATTTCTGCACCCATCTGAGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- TCAGAGCAATAATTATAGATCATGAAGTATTTCTGAACCCATCTGAGCCT  Raphanus raphanistrum subsp. landra
EW716940       <-- ..................................................  Raphanus sativus var. oleiformis
EX760641       --> TCAGAGCAATAATTATAGATCATGAAGTACTTCTGCACCCATCTCAGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW721378       --> TCAGAGCAATAATTATAGATCATGAAGTATTTCTGCACCCATCTAAGCCT  Raphanus sativus var. oleiformis
EV571508       --> TCAGAGCAATAATTATAGATCATGAAGTATTTCTGAACCCATCTGAGCCT  Raphanus raphanistrum subsp. landra
FD968277       --> TCAGAGCAATAATTATAGATCATGAAGTACTTCTGCACACATCTCAGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572233       --> TCAGAGCAATAATTATAGATCATGAAGTATTTCTGAACCCATCTGAGCCT  Raphanus raphanistrum subsp. landra

               251    -    301
UN20724        --> CCTCCTGCCATATGCATTGAGCTCCTTTGCCGTTTGCAGTTCACTATCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- CCTCCTGCCATATGCATTGAGCTCCTTTGCCGTTTGCAGTTCACTATCAC  Raphanus raphanistrum subsp. landra
EW716940       <-- ..................................................  Raphanus sativus var. oleiformis
EX760641       --> CCTCCTGCCATATGCATTGAGCTCATTTGCCGTTTGCAACTCACTATCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW721378       --> CCTCCTGCCATATGCATTGAGCTCATTCGCCGTTTGCAGCTCACTATCAC  Raphanus sativus var. oleiformis
EV571508       --> CCTCCTGCCATATGCATTGAGCTCCTTTGCCGTTTG-AGTTCACTATCAC  Raphanus raphanistrum subsp. landra
FD968277       --> CCTCCTGCCATATGCATTGAGCTCATTTGCCGTTTGCAACTCACTATCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572233       --> CCTCCTGCCATATGCATTGAGCTCCTTTGCCGTTTGCAGTTCACTATCAC  Raphanus raphanistrum subsp. landra

               301    -    351
UN20724        --> TTAAAGAAGTCTTGAATTTGGGGTCACAGCCTGAAGAGGCAGTGCAAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- TTAAAGAAGTCTTGAATTTGGGGTCACAGCCTGAAGAGGCAGTGCAAGCC  Raphanus raphanistrum subsp. landra
EW716940       <-- ..................................................  Raphanus sativus var. oleiformis
EX760641       --> TTAGAGAAGTCTTGAATTTGGGGTCACAGCCTGAAGAGACAGTGCAAGCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW721378       --> TTAAAGAAGTCTTGAATTTGGGGTCACAGCCTGAAGAGACGGTACAAGCC  Raphanus sativus var. oleiformis
EV571508       --> TTAAAGAAGTCTTGAATTTGGGGTCACAGCCTGAAGAGGCAGTGCAAGCC  Raphanus raphanistrum subsp. landra
FD968277       --> TTAGAGAAGTCTTGAATTTGGGGTCACAGCCTGAAGAGACAGTGCAAGCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572233       --> TTAAAGAAGTCTTGAATTTGGGGTCACAGCCTGAAGAGGCAGTGCAAGCC  Raphanus raphanistrum subsp. landra

               351    -    401
UN20724        --> GCAGCGTTGAATCCTCTGTAGTAAGCTGTGAAAGGAGCCTTGGACCAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- GCAGCGTTGAATCCTCTGTAGTAAGCTGTGAAAGGAGCCTTGGATCAGTC
EW716940       <-- ..................................................
EX760641       --> GCAGCGTTGAATCCTCTGTAGTAAGCTGTGAAAGGAGCTTTGGACCAGTC
EW721378       --> GCAGTATTGAATCCTCTGTAGTAAGCTGTGAAAGGAGCCTTGGACCAGTC
EV571508       --> GCAGCGTTGAATCCTCTGTAGTAAGCTGTGAAAGGAGCCTTGGACCAGTC
FD968277       --> GCAGCGTTGAATCCTCTGTAGTAAGCTGTGAAAGGAGCTTTGGACCAGTC
EV572233       --> GCAGCGTTGAATCCTCTGTAGTAAGCTGTGAAAGGAGCCTTGGATCAGTC

               401    -    451
UN20724        --> AGTCTTTACAAGACCACCTCTCGTAGCCCAATCATCTGCATTCCACAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- AGTCTTTACAAGACCACCTCTCGTAGCCCAATCATCTGCATTCCACAGGC
EW716940       <-- ..................................................
EX760641       --> AGTCTTTACAAGACCACCTCTCGTAGCCCAATCATCTGCATTCCACAGGC
EW721378       --> AGTCTTTACAAGACCACCTCTCGTGGCCCAGTCATCTGCATTCCACAGGC
EV571508       --> AGTCTTTACAAGACCACCTCTCGTAGCCCAATCATCTGCATTCCACAGGC
FD968277       --> AGTCTTTACAAGACCACCTCTCGTAGCCCAATCATCTGCATTCCACAGGC
EV572233       --> AGTCTTTACAAGACCACCTCTCGTAGCCCAATCATCTGCATTCCACAGGC

               451    -    501
UN20724        --> TGGAGTAGATCCTCATTGGTTGGTTCTTTGGGAAAGGAACACCAAGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- TGGAGTAGATCCTCATTGGTTGGTTCTTTGGGAAAGGAACACCAAGCTTC  Raphanus raphanistrum subsp. landra
EW716940       <-- ..................................................  Raphanus sativus var. oleiformis
EX760641       --> TCGAGTAGATCCTCATTGGTTGGTTCTTTGGGAAAGGAACACCAAGCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW721378       --> TCGAGTAGATCCTCATTGGTTGGTTCTTTGGGAAAGGAACACCAAGCTTC  Raphanus sativus var. oleiformis
EV571508       --> TGGAGTAGATCCTCATTGGTTGGTTCTTTGGGAAAGGAACACCAAGCTTC  Raphanus raphanistrum subsp. landra
FD968277       --> TCGAGTAGATCCTCATTGGTTGGTTCTTTGGGAAAGGAACACCAAGCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572233       --> TGGAGTAGATCCTCATTGGTTGGTTCTTTGGGAAAGGAACACCAAGCTTC  Raphanus raphanistrum subsp. landra

               501    -    551
UN20724        --> TCTGCATTGTTGAACACTCTTATAGGCAAGTTGTCCACCAAGAATATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- TCTGCATTGTTGAACACTCTTATAGGCAAGTTGTCCACCAAGAATATGAT
EW716940       <-- ..............................................TGAT
EX760641       --> TCTGCATTGTTGAACACTCTTATAGGCAAGTTGTCCACCAAGAATATGAT
EW721378       --> TCCGCATTGTTGAACACTCTTATAGGCAAATTGTCCACCAAGAATATGAT
EV571508       --> TCTGCATTGTTGAACACTCTTATAGGCAAGTTGTCCACCAAGAATATGAT
FD968277       --> TCTGCATTGTTGAACACTCTTATAGGCAAGTTGTCCACCAAGAATATGAT
EV572233       --> TCTGCATTGTTGAACACTCTTATAGGCAAGTTGTCCACCAAGAATATGAT

               551    -    601
UN20724        --> GTGTTGAGGTCTCCAGACAATAGAGTAAGTGTGGAAGTTCTTGGTTGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- GTGTTGAGGTCTCGAGACAATAGAGTAAGTGTGGAAGTTCTTGGTTGGAT  Raphanus raphanistrum subsp. landra
EW716940       <-- GTGTTGAGGTCTCCAGACAATAGAGTAAGTGTGGAAGTTCTTGGTTGGGT  Raphanus sativus var. oleiformis
EX760641       --> GTGTTGAGGTCTCCAGACAATAGAGTAAGTGTGGAAGTTCTTGGTTGGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW721378       --> GTGTTGAGGTCTCCAGACAATAGAGTAAGTGTGGAAGTTCTTGGTTGGGT  Raphanus sativus var. oleiformis
EV571508       --> GTGTTGAGGTCTCGAGACAATAGAGTAAGTGTGGAAGTTCTTGGTTGGAT  Raphanus raphanistrum subsp. landra
FD968277       --> GTGTTGAGGTCTCCAGACAATAGAGTAAGTGTGGAAGTTCTTGGTTGGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572233       --> GTGTTGAGGTCTCGAGACAATAGAGTAAGTGTGGAAGTTCTTGGTTGGAT  Raphanus raphanistrum subsp. landra

               601    -    651
UN20724        --> CGAACCAGAGATAAAACTGTTGTTCTCTGTTGCCTTTCCCTTGAGCAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- CGAACCAGAGATAAAACTGTTGTTCTCTGTTGCCTTTCCCTTGAGCAAAG
EW716940       <-- CGAACCAGAGATAAAACTGTTGTTCTCTGTTGCCTTTCCCTTGAGCAAAG
EX760641       --> CGAACCAGAGATAAAACTGTTGTTCTCTGTTGCCTTTCCCTTGAGCAAAG
EW721378       --> CGAACCAGAGATAAAACTGTTGTTCTCTGTTGCCTTTCCCTTGAGCAAAG
EV571508       --> CGAACCAGAGATAAAACTGTTGTTCTCTGTTGCCTTTCCCTTGAGCAAAG
FD968277       --> CGAACCAGAGATAAAACTGTTGTTCTCTGTTGCCTTTCCCTTGAGCAAAG
EV572233       --> CGAACCAGAGATAAAACTGTTGTTCTCTGTTGCCTTTCCCTTGAGCAAAG

               651    -    701
UN20724        --> ACGTTGGTGTGGAGAACATAAGGCTTACCTGTCTCGTTTCCAAGAAACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- ACGTTGGTGTGGAGAACATAAGGCTTACCTGTCTCGTTccc.........
EW716940       <-- ACGTTGGTGTGAAGAACATAAGGCTTACCTGTCTCGTTTCCAAGAAACTC
EX760641       --> ACGTTGGTGTGGAGAACATAAGGCTTACCTGTCTCGTTTCCAAGAAACTC
EW721378       --> ACGTTGGTGTGAAGAACATAAGGCTTACCTGTCTCGTTTCCAAGAAACTC
EV571508       --> ACGTTGGTGTGGAGAACATAAGGCTTACCTGTCTCGTTCCCTAGAAACTC
FD968277       --> ACGTTGGTGTGGAGAACATAAGG...........................
EV572233       --> ACGTTGGTGTGGAGAACATAAGGCTTACCTGTCTCGTTccc.........

               701    -    751
UN20724        --> GAAATCTATCTCATCATGTGTTGCTCCTTGCGACGACAAGTAGTAAGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- ..................................................
EW716940       <-- GAAATCTATCTCATCATGTGTTGCTCCTTGCGACGACAAGTAGTAAGCAG
EX760641       --> GAAATCTATCTCATCATGTGTTGCTCCTTGCGACGACAAGTAGTAA....
EW721378       --> ..................................................
EV571508       --> GAAATCTATCTCATCATGTGTTGCCCCTTGCGACGACAAGTAGTAAGCAG
FD968277       --> ..................................................
EV572233       --> ..................................................

               751    -    801
UN20724        --> TGACGGTGCCGGCTGAGTTTCCGGCTACGAGTTTAAGCTGCATATCGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- ..................................................
EW716940       <-- TGACGGTGCCGGCTGAGTTTCCGGCTACGAGTTTAAGCTGCATATCGATC
EX760641       --> ..................................................
EW721378       --> ..................................................
EV571508       --> TGACGGTG..........................................
FD968277       --> ..................................................
EV572233       --> ..................................................

               801    -    851
UN20724        --> CGTCCGAATAGATACTCTTTCTTGGATTTGAACCCCGACCCGGAAACCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- ..................................................
EW716940       <-- CGTCCGAATAGATACTCTTTCTTGGATTTGAACCCCGACCCGGAAACCCG
EX760641       --> ..................................................
EW721378       --> ..................................................
EV571508       --> ..................................................
FD968277       --> ..................................................
EV572233       --> ..................................................

               851    -    901
UN20724        --> GTCTAGAGACAGGGACAGCATGTTTCCTCCGTTGAAGATTTTACCCCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- ..................................................
EW716940       <-- GTCTAGAGACAGGGACAGCATGTTTCCTCCGTTGAAGATTTTACCCCTGC
EX760641       --> ..................................................
EW721378       --> ..................................................
EV571508       --> ..................................................
FD968277       --> ..................................................
EV572233       --> ..................................................

               901    -    951
UN20724        --> GGTCACCCCACGTGAGGTCGAACTCGTCGAAGAAGTTGCCTGAGTAGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- ..................................................
EW716940       <-- GGTCACCCCACGTGAGGTCGAACTCGTCGAAGAAGTTGCCTGAGTAGGCT
EX760641       --> ..................................................
EW721378       --> ..................................................
EV571508       --> ..................................................
FD968277       --> ..................................................
EV572233       --> ..................................................

               951    -   1001
UN20724        --> GAACCGAACATCATTACCAGCAGAACAGCTGCCATGATGGTGATGGTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- ..................................................
EW716940       <-- GAACCGAACATCATTACCAGCAGAACAGCTGCCATGATGGTGATGGTGAG
EX760641       --> ..................................................
EW721378       --> ..................................................
EV571508       --> ..................................................
FD968277       --> ..................................................
EV572233       --> ..................................................

               1001   -   1051
UN20724        --> GCTCCAGCTTCGTCCCATTTGGGTTTAGATGGTGGAGCTGAGGGGTGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- ..................................................
EW716940       <-- GCTCCAGCTTCGTCCCATTTGGGTTTAGATGGTGGAGCTGAGGGGTGTGT
EX760641       --> ..................................................
EW721378       --> ..................................................
EV571508       --> ..................................................
FD968277       --> ..................................................
EV572233       --> ..................................................

               1051   -   1101
UN20724        --> GTTTAGTAAGATTTGAAAGTAAGTTGAGAAGATGATGTGATATTTATGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567257       <-- ..................................................
EW716940       <-- GTTTAGTAAGATTTGAAAGTAAGTTGAGAAGATGATGTGATATTTATGTT
EX760641       --> ..................................................
EW721378       --> ..................................................
EV571508       --> ..................................................
FD968277       --> ..................................................
EV572233       --> ..................................................

               1101   -   1151
UN20724        --> TTGGTGC
                   ~~~~~~~
EV567257       <-- .......
EW716940       <-- TTGGTGC
EX760641       --> .......
EW721378       --> .......
EV571508       --> .......
FD968277       --> .......
EV572233       --> .......