1      -     51
UN20793        --> GGAGAGAAGAAAGATCTGGAGGAACAATGACAACAACAAGACAGATGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543966       <-- .ggGAGAAGAAAGATCTGGAGGAACAATGACAACAACAAGACAGATGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW728997       <-- .ggGAGAAGAAAGATCTG-AGGAGCAATGACAACAACAAGACAGATGTTG  Raphanus sativus cv Early Scarlet Globe
FD574867       <-- ....gGAAGAAAGATCTG-AGGAGCAATGACAACAACAAGACAGATGTTG  Raphanus sativus cv Early Scarlet Globe
FD984434       <-- ......AAGAAAGATCTGGAGGAACAATGACAACAACAAGACAGATGTTG  Raphanus raphanistrum subsp. landra
EV550984       --> GGAGAGAAGAAAGATCTGGAGGAACAATGACAACAACAAGACAGATGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548260       --> .ggGAGAAGAAAGATCTGGAGGAACAATGACAACAACAAGACAGATGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW724326       --> .ggGAGAAGAAAGATCTG-AGGAGCAATGACAACAACAAGACAGATGTTG  Raphanus sativus cv Early Scarlet Globe
FD570941       --> ....gGAAGAAAGATCTG-AGGAGCAATGACAACAACAAGACAGATGTTG  Raphanus sativus cv Early Scarlet Globe
FD988561       --> .....GAAGAAAGATCTGGAGGAACAATGACAACAACAAGACAGATGTTG  Raphanus raphanistrum subsp. landra

               51     -    101
UN20793        --> GAGCAGCCACAATCACCATTTATTCAACGTACCATAAGCATCAATGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543966       <-- GAGCAGCCACAATCACCATTTATTCAACGTACCATAAGCATCAATGGAAG
EW728997       <-- GAGCAGCCACAATCACCATTTATTCAACGTACCATAAGCATCAATGGAAG
FD574867       <-- GAGCAGCCACAATCACCATTTATTCAACGTACCATAAGCATCAATGGAAG
FD984434       <-- GAGCAGCCACAATCACCATTTATTCAACGTACCATAAGCATCAATGGTAG
EV550984       --> GAGCAGCCACAATCACCATTTATTCAACGTACCATAAGCATCAATGGAAG
EV548260       --> GAGCAGCCACAATCACCATTTATTCAACGTACCATAAGCATCAATGGAAG
EW724326       --> GAGCAGCCACAATCACCATTTATTCAACGTACCATAAGCATCAATGGAAG
FD570941       --> GAGCAGCCACAATCACCATTTATTCAACGTACCATAAGCATCAATGGAAG
FD988561       --> GAGCAGCCACAATCACCATTTATTCAACGTACCATAAGCATCAATGGTAG

               101    -    151
UN20793        --> CCCCATGGTAGATGACAGAGAAGAGGAGCTTTCACGCTCTGCTTTAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543966       <-- CCCTATGGTAGATGACAGAGAAGAGGAGCTTTCACGCTCTGCTTTAGCTT
EW728997       <-- CCCCATGGTAGATGACAGAGAAGAGGAGCTTTCACGCTCTGCTTTAGCTT
FD574867       <-- CCCCATGGTAGATGACAGAGAAGAGGAGCTTTCACGCTCTGCTTTAGCTT
FD984434       <-- CCCCATGGTAGATGATAGAGAAGAGGAGCTTTCACGCTCTGCTTTAGCTT
EV550984       --> CCCTATGGTAGATGACAGAGAAGAGGAGCTTTCACGCTCTGCTTTAGCTT
EV548260       --> CCCTATGGTAGATGACAGAGAAGAGGAGCTTTCACGCTCTGCTTTAGCTT
EW724326       --> CCCCATGGTAGATGACAGAGAAGAGGAGCTTTCACGCTCTGCTTTAGCTT
FD570941       --> CCCCATGGTAGATGACAGAGAAGAGGAGCTTTCACGCTCTGCTTTAGCTT
FD988561       --> CCCCATGGTAGATGATAGAGAAGAGGAGCTTTCACGCTCTGCTTTAGCTT

               151    -    201
UN20793        --> TGTATAAGGAAAAAGAAGATGAGATCGAAAGGAGGAAGATGGAGGTTAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543966       <-- TGTATAAGGAAAAAGAAGATGAGATCGAAAGGAGGAAGATGGAGGTTAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW728997       <-- TGTATAAGGAAAAAGAAGATGAGATTGAAAGGAGGAAGATGGAGGTTAGG  Raphanus sativus cv Early Scarlet Globe
FD574867       <-- TGTATAAGGAAAAAGAAGATGAGATTGAAAGGAGGAAGATGGAGGTTAGG  Raphanus sativus cv Early Scarlet Globe
FD984434       <-- TGTATAAAGAAAAAGAAGATGAGATCGAAAGGAGGAAGATGGAGGTCAGG  Raphanus raphanistrum subsp. landra
EV550984       --> TTTATAAGGAAAAA--AGATGAGATCGAAAGGAGGAAGATGGAGGTTAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548260       --> TGTATAAGGAAAAAGAAGATGAGATCGAAAGGAGGAAGATGGAGGTTAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW724326       --> TGTATAAGGAAAAAGAAGATGAGATTGAAAGGAGGAAGATGGAGGTTAGG  Raphanus sativus cv Early Scarlet Globe
FD570941       --> TGTATAAGGAAAAAGAAGATGAGATTGAAAGGAGGAAGATGGAGGTTAGG  Raphanus sativus cv Early Scarlet Globe
FD988561       --> TGTATAAAGAAAAAGAAGATGAGATCGAAAGGAGGAAGATGGAGGTCAGG  Raphanus raphanistrum subsp. landra

               201    -    251
UN20793        --> GATAGGGTCCAGAAAAAGCTTGGACTAGCTGAGGAAGCTACAAGGAGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543966       <-- GATAGAGTCCAGAAAAAGCTTGGACTAGCCGAGGAAGCTACAAGGAGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW728997       <-- GATAGGGTTCAGAAAAAGCTTGGACTCGCTGAGGAAGCTGCAAGGAGATT  Raphanus sativus cv Early Scarlet Globe
FD574867       <-- GATAGGGTTCAGAAAAAGCTTGGACTCGCTGAGGAAGCTGCAAGGAGATT  Raphanus sativus cv Early Scarlet Globe
FD984434       <-- GATAGGGTCCAGAAAAAGCTTGGACTAGCTGAGGAAGCTACGAGGAGATT  Raphanus raphanistrum subsp. landra
EV550984       --> GATAGAGTCCAGAAAAAGCTTGGACTAGCCGAGGAAGCTACAAGGAGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548260       --> GATAGAGTCCAGAAAAAGCTTGGACTAGCCGAGGAAGCTACAAGGAGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW724326       --> GATAGGGTTCAGAAAAAGCTTGGACTCGCTGAGGAAGCTGCAAGGAGATT  Raphanus sativus cv Early Scarlet Globe
FD570941       --> GATAGGGTTCAGAAAAAGCTTGGACTCGCTGAGGAAGCTGCAAGGAGATT  Raphanus sativus cv Early Scarlet Globe
FD988561       --> GATAGGGTCCAGAAAAAGCTTGGACTAGCTGAGGAAGCTACGAGGAGATT  Raphanus raphanistrum subsp. landra

               251    -    301
UN20793        --> AGCCGAGATTCGGGAAGAGCTGGAAGCTCTTACCGATCCAATGCGTAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543966       <-- AGCCGAGATTCGGGAAGAGCTGGAAGCTCTTACCGATCCAATGCGTAAGG
EW728997       <-- AGCCGAGATTCGGGAAGAGCTGGAAGCTCTTACCGATCCAATGCGTAAGG
FD574867       <-- AGCCGAGATTCGGGAAGAGCTGGAAGCTCTTACCGATCCAATGCGTAAGG
FD984434       <-- AGCCGAGATTCGAGAAGAGCTGGAAGCTCTTACCGATCCAATGCGTAAGG
EV550984       --> AGCCGAGATTCGGGAAGAGCTGGAAGCTCTTACCGATCCAATGCGTAAGG
EV548260       --> AGCCGAGATTCGGGAAGAGCTGGAAGCTCTTACCGATCCAATGCGTAAGG
EW724326       --> AGCCGAGATTCGGGAAGAGCTGGAAGCTCTTACCGATCCAATGCGTAAGG
FD570941       --> AGCCGAGATTCGGGAAGAGCTGGAAGCTCTTACCGATCCAATGCGTAAGG
FD988561       --> AGCCGAGATTCGAGAAGAGCTGGAAGCTCTTACCGATCCAATGCGTAAGG

               301    -    351
UN20793        --> AGGTTTCCGCGATAAGGAAAAGAGTCGATGCTATTAATCGAGAACTCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543966       <-- AGGTTTCCGCGATAAGGAAAAGAGTCGATGCTATTAATCGAGAACTCAAG
EW728997       <-- AGGTTTCCGCGATAAGGAAAAGAGTCGATGCTATTAATCGAGAACTCAAG
FD574867       <-- AGGTTTCCGCGATAAGGAAAAGAGTCGATGCTATTAATCGAGAACTCAAG
FD984434       <-- AGGTTTCCGCGATAAGGAAAAGAGTCGATGCTATTAATCGAGAACTCAAG
EV550984       --> AGGTTTCCGCGATAAGGAAAAGAGTCGATGCTATTAATCGAGAACTCAAG
EV548260       --> AGGTTTCCGCGATAAGGAAAAGAGTCGATGCTATTAATCGAGAACTCAAG
EW724326       --> AGGTTTCCGCGATAAGGAAAAGAGTCGATGCTATTAATCGAGAACTCAAG
FD570941       --> AGGTTTCCGCGATAAGGAAAAGAGTCGATGCTATTAATCGAGAACTCAAG
FD988561       --> AGGTTTCCGCGATAAGGAAAAGAGTCGATGCTATTAATCGAGAACTCAAG

               351    -    401
UN20793        --> CCATTAGGACAGAGTTGTCAAAGGAAGGAGAGGGAATTCAAAGAAGCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543966       <-- CCATTAGGACAAAGCTGTCAAAGGAAGGAGAGGGAATTCAAAGAAGCACT
EW728997       <-- CCATTAGGACAGAGTTGTCAAAGGAAGGAGAGGGAATTCAAAGAAGCACT
FD574867       <-- CCATTAGGACAGAGTTGTCAAAGGAAGGAGAGGGAATTCAAAGAAGCACT
FD984434       <-- CCATTAGGACAGAGTTGTCAAAGGAAGGAGAGGGAATTCAAAGAAGCACT
EV550984       --> CCATTAGGACAAAGCTGTCAAAGGAAGGAGAGGGAATTCAAAGAAGCACT
EV548260       --> CCATTAGGACAAAGCTGTCAAAGGAAGGAGAGGGAATTCAAAGAAGCACT
EW724326       --> CCATTAGGACAGAGTTGTCAAAGGAAGGAGAGGGAATTCAAAGAAGCACT
FD570941       --> CCATTAGGACAGAGTTGTCAAAGGAAGGAGAGGGAATTCAAAGAAGCACT
FD988561       --> CCATTAGGACAGAGTTGTCAAAGGAAGGAGAGGGAATTCAAAGAAGCACT

               401    -    451
UN20793        --> TGAAGCATACAACGAAAAGAACAAAGAGAAAGCTATGTACATTAGCAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543966       <-- TGAAGCATACAACGAAAAGAACAAAGAGAAAGCTATGTACATTAGCAAGC
EW728997       <-- TGAAGCATACAACGAAAAGAACAAAGAGAAAGCTATGTACATTAGCAAGC
FD574867       <-- TGAAGCATACAACGAAAAGAACAAAGAGAAAGCTATGTACATTAGCAAGC
FD984434       <-- TGAAGCACACAACGAAAAGAACAAAGAGAAAGCTATGTACATTAGCAAGC
EV550984       --> TGAAGCATACAACGAAAAGAACAAAGAGAAAGCTATGTACATTAGCAAGC
EV548260       --> TGAAGCATACAACGAAAAGAACAAAGAGAAAGCTATGTACATTAGCAAGC
EW724326       --> TGAAGCATACAACGAAAAGAACAAAGAGAAAGCTATGTACATTAGCAAGC
FD570941       --> TGAAGCATACAACGAAAAGAACAAAGAGAAAGCTATGTACATTAGCAAGC
FD988561       --> TGAAGCACACAACGAAAAGAACAAAGAGAAAGCTATGTACATTAGCAAGC

               451    -    501
UN20793        --> TAGTTGAGCTTGTTACTGAAAGCGAGAAACTGCGAATGACAAAGCTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543966       <-- TAGTTGAGCTTGTTACTGAAAGCGAAAAACTGCGAATGACAAAGCTTGAT
EW728997       <-- TAGTTGAGCTTGTTACTGAAAGCGAGAAACTGCGAATGACAAAGCTTGAT
FD574867       <-- TAGTTGAGCTTGTTACTGAAAGCGAGAAACTGCGAATGACAAAGCTTGAT
FD984434       <-- TAGTTGAGCTTGTTACTGAAAGCGAGAAACTGCGAATGAAAAAGCTTGAT
EV550984       --> TAGTTGAGCTTGTTACTGAAAGCGAAAAACTGCGAATGACAAAGCTTGAT
EV548260       --> TAGTTGAGCTTGTTACTGAAAGCGAAAAACTGCGAATGACAAAGCTTGAT
EW724326       --> TAGTTGAGCTTGTTACTGAAAGCGAGAAACTGCGAATGACAAAGCTTGAT
FD570941       --> TAGTTGAGCTTGTTACTGAAAGCGAGAAACTGCGAATGACAAAGCTTGAT
FD988561       --> TAGTTGAGCTTGTTACTGAAAGCGAGAAACTGCGAATGAAAAAGCTTGAT

               501    -    551
UN20793        --> GAACTCAGCAAAGGCATTGACGTTTCCTTACGCTAACACAAGATGATCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543966       <-- GAACTCAGCAAAGGCATTGACGTTTCCTTACGCTAACACAAGATGATCAT
EW728997       <-- GAACTCAGCAAAGGCATTGACGTTTCCTTACGCTAACACAAGATGATCAT
FD574867       <-- GAACTCAGCAAAGGCATTGACGTTTCCTTACGCTAACACAAGATGATCAT
FD984434       <-- GAACTCAGCAAAGGCATTGACGTTTCCTTACGCTAACACAAGATGATCAT
EV550984       --> GAACTCAGCAAAGGCATTGACGTTTCCTTACGCTAACACAAGATGATCAT
EV548260       --> GAACTCAGCAAAGGCATTGACGTTTCCTTACGCTAACACAAGATGATCAT
EW724326       --> GAACTCAGCAAAGGCATTGACGTTTCCTTACGCTAACACAAGATGATCAT
FD570941       --> GAACTCAGCAAAGGCATTGACGTTTCCTTACGCTAACACAAGATGATCAT
FD988561       --> GAACTCAGCAAAGGCATTGACGTTTCCTTACGCTAACACAAGATGATCAT

               551    -    601
UN20793        --> CAGCCAGCTTTGCTTATTTCATTTGCACCTCTTTTTT-AATTGTTTGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543966       <-- CAGCCAGCTTTGCTTATTTCATTTGCACCTCTTTTTT-AATTGTTTGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW728997       <-- CAGCCAGCTTTCCTTATTTCATTTGCACCTCTTTTTT-AATAGTTTGATT  Raphanus sativus cv Early Scarlet Globe
FD574867       <-- CAGCCAGCTTTCCCTATTTCATTTGCACCTCTTTTTTTAATTGTTTGATT  Raphanus sativus cv Early Scarlet Globe
FD984434       <-- CAGCCAGCTTTGCTTATTTCATTTGCACCTCTTTTTTTAATTGTTTGATT  Raphanus raphanistrum subsp. landra
EV550984       --> CAGCCAGCTTTGCTTATTTCATTTGCACCTCTTTTTT-AATTGTTTGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548260       --> CAGCCAGCTTTGCTTATTTCATTTGCACCTCTTTTTT-AATTGTTTGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW724326       --> CAGCCAGCTTTCCTTATTTCATTTGCACCTCTTTTTT-AATAGTTTGATT  Raphanus sativus cv Early Scarlet Globe
FD570941       --> CAGCCAGCTTTCCCTATTTCATTTGCACCTCTTTTTTTAATTGTTTGATT  Raphanus sativus cv Early Scarlet Globe
FD988561       --> CAGCCAGCTTTGCTTATTTCATTTGCACCTCTTTTTTTAATTGTTTGATT  Raphanus raphanistrum subsp. landra

               601    -    651
UN20793        --> TCGATATTGCTTGTCTTTGTGATCAAATCTGATTTCCTGATTTAGTTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543966       <-- TCGATATTGCTTGTCTTTGTGATCAAATCTGATTTCCTGATTTAGTTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW728997       <-- TCGATATTACTTGTCTTTGTGATCAAATCTGATTTCCTGATTTAGTTGAA  Raphanus sativus cv Early Scarlet Globe
FD574867       <-- TCGATATTACTTGTCTTTGTGATCAAATCTGATTTCCTGATTTAGTTGAA  Raphanus sativus cv Early Scarlet Globe
FD984434       <-- TCGATATTGCTTGTCTTTGTGATCAAATCTGATTTCCTGATTTAGTTGAA  Raphanus raphanistrum subsp. landra
EV550984       --> TCGATATTGCTTGTCTTTGTGATCAAATCTGATTTCCTGATTTAGTTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548260       --> TCGATATTGCTTGTCTTTGTGATCAAATCTGATTTCCTGATTTAGTTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW724326       --> TCGATATTACTTGTCTTTGTGATCAAATCTGATTTCCTGATTTAGTTGAA  Raphanus sativus cv Early Scarlet Globe
FD570941       --> TCGATATTACTTGTCTTTGTGATCAAATCTGATTTCCTGATTTAGTTGAA  Raphanus sativus cv Early Scarlet Globe
FD988561       --> TCGATATTGCTTGTCTTTGTGATCAAATCTGATTTCCTGATTTAGTTGAA  Raphanus raphanistrum subsp. landra

               651    -    701
UN20793        --> ATGTGTTAAAGCTTCGGTATGAGTTTACATTCTTATGTTTTCATGTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543966       <-- ATGTGTTAAAGCTTCGGTATGAGTTTACATTCTT................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW728997       <-- ATGTGTTAAAGCTTCGGTATGAATTTACATTCTTATGTTTCCATGTGTTG  Raphanus sativus cv Early Scarlet Globe
FD574867       <-- ATGTGTTAAAGCTTCGGTATGAATTTACATTCTTATGTTTTCATGTGTTG  Raphanus sativus cv Early Scarlet Globe
FD984434       <-- ATGTGTTAAGGCTTCGGTATGAGTTTACATTCTTATGTTTTCATGTGTTG  Raphanus raphanistrum subsp. landra
EV550984       --> ATGTGTTAAAGCTTCGGTATGAGTTTACATTCTTATGTTTTC........  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548260       --> ATGTGTTAAAGCTTCGGTATGAGTTTACATTCTT................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW724326       --> ATGTGTTAAAGCTTCGGTATGAATTTACATTCTTATGTTTCCATGTGTTG  Raphanus sativus cv Early Scarlet Globe
FD570941       --> ATGTGTTAAAGCTTCGGTATGAATTTACATTCTTATGTTTTCATGTGTTG  Raphanus sativus cv Early Scarlet Globe
FD988561       --> ATGTGTT...........................................  Raphanus raphanistrum subsp. landra

               701    -    751
UN20793        --> TGACAATGTTCCACAAAAATATGCTCATTTGTTACTCTGACCCTGCAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543966       <-- ..................................................
EW728997       <-- TGACAATGTTCCACAAAAATATGC..........................
FD574867       <-- TGACAATGTTCCACAAAAATATGCTCATTTattcc...............
FD984434       <-- TGACAATGTTCCACAAAAATATGCTCATTTGTTACTCTGACCCTGCAAGT
EV550984       --> ..................................................
EV548260       --> ..................................................
EW724326       --> TGACAATGTTCCACAAAAATATGC..........................
FD570941       --> TGACAATGTTCCACAAAA-TATGCTCATTTattcc...............
FD988561       --> ..................................................

               751    -    801
UN20793        --> TTTGTAACTGGTCTATAAAGCAATCTGCCTCTTAGGCTATTCAACTTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543966       <-- ..................................................
EW728997       <-- ..................................................
FD574867       <-- ..................................................
FD984434       <-- TTTGTAACTGGTCTATAAAGCAATCTGCCTCTTAGGCTATTCAACTTTAA
EV550984       --> ..................................................
EV548260       --> ..................................................
EW724326       --> ..................................................
FD570941       --> ..................................................
FD988561       --> ..................................................

               801    -    851
UN20793        --> CCTCTTT
                   ~~~~~~~
EV543966       <-- .......
EW728997       <-- .......
FD574867       <-- .......
FD984434       <-- CCTCTTT
EV550984       --> .......
EV548260       --> .......
EW724326       --> .......
FD570941       --> .......
FD988561       --> .......