1      -     51
UN20807        --> TTTTTTTAAATAGAAACCATCTTTCTTTTCTTTAGAAATGAAAAAGTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901282       <-- TTTTTTTAAATAGAAACCATCTTTCTTTTCTTTAGAAATGAAAAAGTGGC  Raphanus raphanistrum subsp. maritimus
FD986288       <-- .....cTAAATAGAAACCATCTTTCTTTTCTTTAGAAATGAAAAAGTGGC  Raphanus raphanistrum subsp. landra
EV569310       <-- .......AAATAGAAACCATCTTTCTTTTCTTTAGAAATGAAAAAGTGGC  Raphanus raphanistrum subsp. landra
EV569624       <-- .......AAATAGAAACCATCTTTCTTTTCTTTAGAAATGAAAAAGTGGC  Raphanus raphanistrum subsp. landra
FD550869       <-- .......AAATAGAAACCATCTTTCTTTTCTTTAGAAATGAAAAAGTGGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559146       <-- ........AATAGAAACCATCTTTCTTTTCTTTAGAAATGAAAAAGTGGC  Raphanus raphanistrum subsp. landra
FD535889       <-- .........ATAGAAACCATCTTTCTTTTCTTTAGAAATGAAAAAGTGGC  Raphanus raphanistrum subsp. maritimus
FD988338       <-- .......gaacAGAAACCATCTTTCTTTTCTTTTGAAATGAAAATGTGGC  Raphanus raphanistrum subsp. landra
EV528224       <-- ....................CTTTCTTTTCTTTTGAAATGAAAAAGTGGC  Raphanus raphanistrum subsp. maritimus
FD562951       <-- ....................CTTTCTTTTCTTTTGAAATGAAAAAGTGGC  Raphanus sativus var. oleiformis
FD961933       <-- ....................CTTTCTTTTCTTTTGAAATGAAAAAGTGGC  Raphanus raphanistrum subsp. maritimus
EX747743       <-- .....................TTTCTTTTCTTTAGAAATGAAAAAGTGGC  Raphanus raphanistrum subsp. maritimus
EY916827       <-- ...............................................GGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD569892       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD982563       --> .....cTAAATAGAAACCATCTTTCTTTTCTTTAGAAATGAAAAAGTGGC  Raphanus raphanistrum subsp. landra
FD546777       --> .......AAATAGAAACCATCTTTCTTTTCTTTAGAAATGAAAAAGTGGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984247       --> .......gaacAGAAACCATCTTTCTTTTCTTTTGAAATGAAAATGTGGC  Raphanus raphanistrum subsp. landra
EV532276       --> ..............AACCATCTTTCTTTTCTTTTGAAATGAAAAAGTGGC  Raphanus raphanistrum subsp. maritimus
FD566726       --> ....................CTTTCTTTTCTTTTGAAATGAAAAAGTGGC  Raphanus sativus var. oleiformis

               51     -    101
UN20807        --> GAAAGCAAACATATGTTATGGGATAAGAGTCACTCCCCTACAGACATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901282       <-- GAAAGCAAACATATGTTATGGGATAAGAGTCACTCCCCTACAGACATGAT
FD986288       <-- GAAAGCAAACACATGTTATGGGATAAGAGTCACTCCCCTACAGACATGAT
EV569310       <-- GAAAGCAAACATATGTTATGGGATAAGAGTCACTCCCCTACAGACATGAT
EV569624       <-- GAAAGCAAACATATGTTATGGGATAAGAGTCACTCCCCTACAGACATGAT
FD550869       <-- GAAAGCAAACATATGTTATGGGATAAGAGTCACTCCCCTACAGACATGAT
FD559146       <-- GAAAGCAAACATATGTTATGGGATAAGAGTCACTCCCCTACAGACATGAT
FD535889       <-- GAAAGCAAACATATGTTATGGGATAAGAGTCACTCCCCTACAGACATGAT
FD988338       <-- GAAAGCAAACACATGTTATGGGATAAGAGTCACTCCCCTACAGACATGGT
EV528224       <-- GAAAGCAAACATATGTTATGGGATAAGAGTCACTCCCCTACAGACATGAT
FD562951       <-- GAAAGCAAACATATGTTATGGGATAAGAGTCACTCCCCTACAGACATGAT
FD961933       <-- GAAAGCAAACATATGTTATGGGATAAGAGTCACTCCCCTACAGACATGAT
EX747743       <-- GAAAGCAAACATATGTTATGGGATAAGAGTCACTCCCCTACAGACATGAT
EY916827       <-- GAAAGCAAACATATGTTATGGGATAAGAGTCACTCCCCTACAGACATGAT
FD569892       <-- ...AGCAAACATATGTTATGGGATAAGAGTCACTCCCCTACAGACATGAT
FD982563       --> GAAAGCAAACACATGTTATGGGATAAGAGTCACTCCCCTACAGACATGAT
FD546777       --> GAAAGCAAACATATGTTATGGGATAAGAGTCACTCCCCTACAGACATGAT
FD984247       --> GAAAGCAAACACATGTTATGGGATAAGAGTCACTCCCCTACAGACATGGT
EV532276       --> GAAAGCAAACATATGTTATGGGATAAGAGTCACTCCCCTACAGACATGAT
FD566726       --> GAAAGCAAACATATGTTATGGGATAAGAGTCACTCCCCTACAGACATGAT

               101    -    151
UN20807        --> AGGAAGTTACACAA-CATTTTAAGTT-GATAAATAAGCACT--GTCAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901282       <-- AGGAAGTTACACAA-CATTTTAAGTT-GATAAATAAGCACT--GTCAAAG
FD986288       <-- AGGAAGTTACACAA-CATTTTAAGTT-GATAAATAAGCACT--GTCAAAG
EV569310       <-- AGGAAGTTACACAA-CATTTTAAGTT-GATAAATAAGCACT--GTCAAAG
EV569624       <-- AGGAAGTTACACAA-CATTTTAAGTT-GATAAATAAGCACT--GTCAAAG
FD550869       <-- AGGAAGTTACACAA-CATTTTAAGTT-GATAAATAAGCACT--GTCAAAG
FD559146       <-- AGGAAGTTACACAA-CATTTTAAGTT-GATAAATAAGCACT--GTCGAAG
FD535889       <-- AGGAAGTTACACAA-CATTTTAAGTT-GATAAATAAGCACT--GTCAAAG
FD988338       <-- AGGAAGTTACACAAACATTTTAAGTTTGATAAATAAGCACTCTGTCAAAG
EV528224       <-- AGGAAGTTACACAA-CATTTTAAGTT-GATAAATAAGCACT--GTCAAAG
FD562951       <-- AGGAAGTTACACAA-CATTTTAAGTT-GATAAATAAGCACT--GTCAAAG
FD961933       <-- AGGAAGTTACACAA-CATTTTAAGTT-GATAAATAAGCACT--GTCAAAG
EX747743       <-- AGGAAGTTACACAA-CATTTTAAGTT-GATAAATAAGCACT--GTCAAAG
EY916827       <-- AGGAAGTTACACAA-CATTTTAAGTT-GATAAATAAGCACT--GTCAAAG
FD569892       <-- AGGAAGTTACACAA-CATTTTAAGTT-GATAAATAAGCACT--GTCAAAG
FD982563       --> AGGAAGTTACACAA-CATTTTAAGTT-GATAAATAAGCACT--GTCAAAG
FD546777       --> AGGAAGTTACACAA-CATTTTAAGTT-GATAAATAAGCACT--GTCAAAG
FD984247       --> AGGAAGTTACACAAACATTTTAAGTTTGATAAATAAGCACTCTGTCAAAG
EV532276       --> AGGAAGTTACACAA-CATTTTAAGTT-GATAAATAAGCACT--GTCAAAG
FD566726       --> AGGAAGTTACACAA-CATTTTAAGTT-GATAAATAAGCACT--GTCAAAG

               151    -    201
UN20807        --> ACACGCTTCATGGATACAAAGCGGGATTATTTCTTGCCACTCTTCTTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901282       <-- ACACGCTTCATGGATACAAAGCGGGATTATTTCTTGCCACTCTTCTTAAG
FD986288       <-- ACACGCTTCATGGATACAAAGCGGGATTATTTCTTGCCACTCTTCTTAAG
EV569310       <-- ACACGCTTCATGGATACAAAGCGGGATTATTTCTTGCCACTCTTCTTAAG
EV569624       <-- ACACGCTTCATGGATACAAAGCGGGATTATTTCTTGCCACTCTTCTTAAG
FD550869       <-- ACACGCTTCATGGATACAAAGCGGGATTATTTCTTGCCACTCTTCTTAAG
FD559146       <-- ACACGCTTCATGGATACAAAGCGGGATTATTTCTTGCCACTCTTCTTAAG
FD535889       <-- ACACGCTTCATGGATACAAAGCGGGATTATTTCTTGCCACTCTTCTTAAG
FD988338       <-- ACACGCTTCATGGATACAAAGCGGGATCATTTCTTGCCACTCTTCTTAAG
EV528224       <-- ACACGCTTCATGGATACAAAGCGGGATTATTTCTTGCCACTCTTCTTAAG
FD562951       <-- ACACGCTTCATGGATACAAAGCGGGATTATTTCTTGCCACTCTTCTTAAG
FD961933       <-- ACACGCTTCATGGATACAAAGCGGGATTATTTCTTGCCACTCTTCTTAAG
EX747743       <-- ACACGCTTCATGGATGCAAAGCGGGATTATTTCTTGCCACTCTTCTTAAG
EY916827       <-- ACACGCTTCATGGATACAAAGCGGGATTATTTCTTGCCACTCTTCTTAAG
FD569892       <-- ACACGCTTCATGGATACAAAGCGGGATTATTTCTTGCCACTCTTTTTAAG
FD982563       --> ACACGCTTCATGGATACAAAGCGGGATTATTTCTTGCCACTCTTCTTAAG
FD546777       --> ACACGCTTCATGGATACAAAGCGGGATTATTTCTTGCCACTCTTCTTAAG
FD984247       --> ACACGCTTCATGGATACAAAGCGGGATCATTTCTTGCCACTCTTCTTAAG
EV532276       --> ACACGCTTCATGGATACAAAGCGGGATTATTTCTTGCCACTCTTCTTAAG
FD566726       --> ACACGCTTCATGGATACAAAGCGGGATTATTTCTTGCCACTCTTCTTAAG

               201    -    251
UN20807        --> ACCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901282       <-- ACCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT
FD986288       <-- ACCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT
EV569310       <-- ACCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT
EV569624       <-- ACCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT
FD550869       <-- ACCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT
FD559146       <-- ACCAGAGCCTCCAAAAGATCCCTTCTGCAATGCCTTGGCTCTTAGTTCTT
FD535889       <-- ACCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT
FD988338       <-- ACCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT
EV528224       <-- ACCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT
FD562951       <-- ACCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT
FD961933       <-- ACCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT
EX747743       <-- ACCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT
EY916827       <-- ACCAGAGCCTCCAAAAGACCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT
FD569892       <-- GCCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT
FD982563       --> ACCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT
FD546777       --> ACCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT
FD984247       --> ACCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT
EV532276       --> ACCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT
FD566726       --> ACCAGAGCCTCCAAAAGATCCCTTCTGCGATGCCTTGGCTCTTAGTTCTT

               251    -    301
UN20807        --> TAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTGGCCATATCGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901282       <-- TAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTGGCCATATCGTGC
FD986288       <-- TAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTGGCCATATCGTGC
EV569310       <-- TAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTGGCCATATCGTGC
EV569624       <-- TAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTGGCCATATCGTGC
FD550869       <-- TAAGTGCCTTTTCCT--CCTTTCTTCTTCTGAAGGTTGGCCATATCGTGC
FD559146       <-- TAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTGGCCATATCGTGC
FD535889       <-- TAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTGGCCATATCGTGC
FD988338       <-- TAAGTGCCTTTTCCTCGTCTTTCTTCTTATGAAGGTTGGCCATATCGTGC
EV528224       <-- TAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTGGCCATATCGTGC
FD562951       <-- TAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTGGACATATCGTGC
FD961933       <-- TAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTGGCCATATCGTGC
EX747743       <-- TAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTGGCCATATCGTGC
EY916827       <-- TAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTGGCCATATCGTGC
FD569892       <-- TAAGTGCCTTTTCCTCGTCTTTCTTCTTGTGAAGGTTGGCCATATCGTGC
FD982563       --> TAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTGGCCATATCGTGC
FD546777       --> TAAGTGCCTTTTCCTC--CTTTCTTCTTCTGAAGGTTGGCCATATCGTGC
FD984247       --> TAAGTGCCTTTTCCTCGTCTTTCTTCTTATGAAGGTTGGCCATATCGTGC
EV532276       --> TAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTGGCCATATCGTGC
FD566726       --> TAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTGGACATATCGTGC

               301    -    351
UN20807        --> TCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901282       <-- TCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCCTT
FD986288       <-- TCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCCTT
EV569310       <-- TCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCCTT
EV569624       <-- TCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCCTT
FD550869       <-- TCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCCTT
FD559146       <-- TCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCCTT
FD535889       <-- TCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCCTT
FD988338       <-- TCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCCTT
EV528224       <-- TCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCCTT
FD562951       <-- TCATCGTATTCCTTCTTATAAGTTTTTGGCT-CTTCAAAGGTTTCGCCTT
FD961933       <-- TCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCCTT
EX747743       <-- TCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCCTT
EY916827       <-- TCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCCTT
FD569892       <-- TCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCCTT
FD982563       --> TCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCCTT
FD546777       --> TCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCCTT
FD984247       --> TCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCCTT
EV532276       --> TCATCGTATTCCTTCTTATCAGTTTTTGGCTGCTTCAAAGGTTTCGCCTT
FD566726       --> TCATCGTATTCCTTCTTATAAGTTTTTGGCT-CTTCAAAGGTTTCGCCTT

               351    -    401
UN20807        --> TCCTCCTTGCTTGGACGACATGGCTGGTTCCTCGAGCTCTAGGGTTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901282       <-- TCCTCCTTGCTTAGACGACATGGTTGGTTCCTCGAGGTCTAGGGTTTGAT  Raphanus raphanistrum subsp. maritimus
FD986288       <-- TCCTCCTTGCTTGGACGACATGGCTGGTTCCTCGAGCTCTAGGGTTTGAT  Raphanus raphanistrum subsp. landra
EV569310       <-- TCCTCCTTGCTTGGACGACATGGCTGGTTCCTCGAGCTCTGGGGTTTGAT  Raphanus raphanistrum subsp. landra
EV569624       <-- TCCTCCTTGCTTGGACGACATGGCTGGTTCCTCGAGCTCTGGGGTTTGAT  Raphanus raphanistrum subsp. landra
FD550869       <-- TCCTCCTTGCTTGGACGACATGGCTGGTTCCTCGAGCTCTAGGGTTTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559146       <-- TCCTCCTTGCTTGGACGACATGGCTGGTTCCTCGAGCTCTAGGGTTTGAT  Raphanus raphanistrum subsp. landra
FD535889       <-- TCCTCCTTGCTTAGACGACATGGTTGGTTCCTCGAGGTCTAGGGTTTGAT  Raphanus raphanistrum subsp. maritimus
FD988338       <-- TCCTCCTTGCTTGGACGACATGGCTGGTTCCTCGAGCTCTAGGGTTTGAT  Raphanus raphanistrum subsp. landra
EV528224       <-- TCCTCCTTGCTTGGACGACATGGCTGGTTCCTCGAGCTCTAGGGTTTGAT  Raphanus raphanistrum subsp. maritimus
FD562951       <-- TCCTCCTTGCTTAGACGACATGGTTGGTTCCTCGAGGTCTAGGGTTTGAT  Raphanus sativus var. oleiformis
FD961933       <-- TCCTCCTTGCTTGGACGACATGGCTGGTTCCTCGAGCTCTAGGGTTTGAT  Raphanus raphanistrum subsp. maritimus
EX747743       <-- TCCTCCTTGCTTGGACGACATGGCTGGTTCCTCGAGCTCTAGGGTTTGAT  Raphanus raphanistrum subsp. maritimus
EY916827       <-- TCCTCCTTGCTTGGACGACATGGCTGGTTCCTCGAGCTCTAGGGTTTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD569892       <-- TCCTCCTT..........................................  Raphanus sativus cv Early Scarlet Globe
FD982563       --> TCCTCCTTGCTTGGACGACATGGCTGGTTCCTCGAGCTCTAGGGTTTGAT  Raphanus raphanistrum subsp. landra
FD546777       --> TCCTCCTTGCTTGGACGACATGGCTGGTTCCTCGAGCTCTAGGGTTTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984247       --> TCCTCCTTGCTTGGACGACATGGCTGGTTCCTCGAGCTCTAGGGTTTGAT  Raphanus raphanistrum subsp. landra
EV532276       --> TCCTCCTTGCTTGGACGACATGGCTGGTTCCTCGAGCTCTAGGGTTTGAT  Raphanus raphanistrum subsp. maritimus
FD566726       --> TCCTCCTTGCTTAAACGACATGGTTGGTTCCTCGAGGTCTAGGGTTTGAT  Raphanus sativus var. oleiformis

               401    -    451
UN20807        --> GCTGATCTGAGAATTGGGGAAAATTTAAGTTTCAGACGATGGACCTGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901282       <-- GCTGATCTGAGAATTGGGGAAAATTTAAGTTTCAGACGATGGACCTGCTG
FD986288       <-- GCTGATCTGAGAATTGGGGAAAATTTAAGTTTCAGACGATGGAC......
EV569310       <-- GCTGATCTGAGAATTGGGGAAAATTTAAGTTTCAGACGATGGAC......
EV569624       <-- GCTGATCTGAGAATTGGGGAAAATTTAAGTTTCAGACGATGGAC......
FD550869       <-- GCTGATCTGAGAATTGGGGAAAATTTAAGTTTCAGACGATGGACCTGCTG
FD559146       <-- GCTGATCTGAGAATTGGGGAAAATTTAAGTTTCAGACGATGGAC......
FD535889       <-- GCTGATCTGAGAATTGGGGAAAATTTAAGTTTCAGACGATGG........
FD988338       <-- GCTGATCCGAGAATTGGGGAAAATTTAAGTTTCAGACGATGGAC......
EV528224       <-- GCTGATCTGAGAATTGGGGAAAATTTAAGTTTCAGACGATGGAC......
FD562951       <-- --GGATCTGAGAATTGGGGAAAATTTAAGTTTCAGACGATGG........
FD961933       <-- GCTGATCTGAGAATTGGGGAAAATTTAAGTTTCAGACGATGGAC......
EX747743       <-- GCTGATCTGAGAATTGGGGAAAATTTAAGTTTCAGACGATGGACCTGCTG
EY916827       <-- GCTGATCTGAGAATTGGGGAAAATTTAAGTTTCAGACGATGGAC......
FD569892       <-- ..................................................
FD982563       --> GCTGATCTGAGAATTGGGGAAAATTTAAGTTTCAGACGATGGAC......
FD546777       --> GCTGATCTGAGAATTGGGGAAAATTTAAGTTTCAGACGATGGACCTGCTG
FD984247       --> GCTGATCCGAGAATTGGGGAAAATTTAAGTTTCAGACGATGGAC......
EV532276       --> GCTGATCTGAAAATTGGGGAAAATTTAAGTTTCAAACGATGGAC......
FD566726       --> G--GATCTGAAAATTGGGGAAAATTTAAGTTTCAAACGATGG........

               451    -    501
UN20807        --> TGTGTATGCGATAGAATCTCTAGTTGCTCGTTTATTATATTGAGTTCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY901282       <-- TGTGTTTGCGAatcc...................................
FD986288       <-- ..................................................
EV569310       <-- ..................................................
EV569624       <-- ..................................................
FD550869       <-- TGTGTATGCGATAGAATCTCTAGTTGCTCGTTTATTATATTGAGTTCGTC
FD559146       <-- ..................................................
FD535889       <-- ..................................................
FD988338       <-- ..................................................
EV528224       <-- ..................................................
FD562951       <-- ..................................................
FD961933       <-- ..................................................
EX747743       <-- Tcc...............................................
EY916827       <-- ..................................................
FD569892       <-- ..................................................
FD982563       --> ..................................................
FD546777       --> TGTGTATGCGATAGAATCTCTAGTTGCTCGTTTATTATATTGAGTTCGTC
FD984247       --> ..................................................
EV532276       --> ..................................................
FD566726       --> ..................................................

               501    -    551
UN20807        --> C
                   ~
EY901282       <-- .
FD986288       <-- .
EV569310       <-- .
EV569624       <-- .
FD550869       <-- C
FD559146       <-- .
FD535889       <-- .
FD988338       <-- .
EV528224       <-- .
FD562951       <-- .
FD961933       <-- .
EX747743       <-- .
EY916827       <-- .
FD569892       <-- .
FD982563       --> .
FD546777       --> C
FD984247       --> .
EV532276       --> .
FD566726       --> .