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Alignment for radish unigene UN21056

               1      -     51
UN21056        --> GGAAGTAAGTTAAGAGAAACACAGAGCAACACATTGAGCCTGAAGAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- ..................................................
FD546811       <-- ..................................................
EY928188       <-- ..................................................
EY902120       <-- ..................................................
FD565462       <-- ..................................................
FD565488       <-- ..................................................
EY932466       --> GGAAGTAAGTTAAGAGAAACACAGAGCAACACATTGAGCCTGAAGAGAAG
FD979920       --> ..............gGAAACACAGAGCAACACATTGAGCCTGAAGAGAAG
EY905765       --> ..................ggACAGAGCAACACATTGAGCCTGAAGAGAAG
EV566556       --> ..................................................
FD550909       --> ..................................................
EX887816       --> ..................................................
EW717690       --> ..................................................

               51     -    101
UN21056        --> AAAAAGAAAAGAGAGAGAGAGAGA--TGAGGAGTGACGTTGCACGGCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- ..................................................
FD546811       <-- ..................................................
EY928188       <-- ..................................................
EY902120       <-- ..................................................
FD565462       <-- ..................................................
FD565488       <-- ..................................................
EY932466       --> AAAAAGAAAAGAGAGAGAGAGAGA--TGAGGAGTGACGTTGCACGGCTCA
FD979920       --> AAAAAGAAAAGAGAGAGAGAGAGAGATGAGGAGTGACGTTGCACGGCTCA
EY905765       --> AAAAAGAAAAGAGAGAGAGAGA----TGAGGAGTGACGTTGCACGGCTCA
EV566556       --> ..................................................
FD550909       --> ..................................................
EX887816       --> ..................................................
EW717690       --> ..................................................

               101    -    151
UN21056        --> GGTGTGGGAAGATGATTCCATTGCTTGGAATGGGAACTTATTGTCCTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- ..................................................
FD546811       <-- ..................................................
EY928188       <-- ..................................................
EY902120       <-- ..................................................
FD565462       <-- ..................................................
FD565488       <-- ..................................................
EY932466       --> GGTGTGGGAAGATGATTCCATTGCTTGGAATGGGAACTTATTGTCCTCAA
FD979920       --> GGTGTGGGAAGATGATTCCATTGCTTGGAATGGGAACTTATTGTCCTCAA
EY905765       --> GGTGTGGGAAGATGATTCCATTGCTTGGAATGGGAACTTATTGTCCTCAA
EV566556       --> ..................................................
FD550909       --> ..................................................
EX887816       --> ..................................................
EW717690       --> ..................................................

               151    -    201
UN21056        --> AAAGATCGAGAGAGCACCATCTTAGCCGTCCATCAAGCCATCAAGATAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- ..................................................
FD546811       <-- ..................................................
EY928188       <-- ..................................................
EY902120       <-- ..................................................
FD565462       <-- ..................................................
FD565488       <-- ..................................................
EY932466       --> AAAGATCGAGAGAGCACCATCTTAGCCGTCCATCAAGCGATCAAGATAGG
FD979920       --> AAAGATCGAGAGAGCACCATCTTAGCCGTCCATCAAGCCATCAAGATAGG
EY905765       --> AAAGATCGAGAGAGCACCATCTTAGCCGTCCATCAAGCCATCAAGATAGG
EV566556       --> ..................................................
FD550909       --> ..................................................
EX887816       --> ..................................................
EW717690       --> ..................................................

               201    -    251
UN21056        --> GTATAGACATTTCGACACCGCAAAGATATATGGATCAGAAGAAGCTCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- ..................................................
FD546811       <-- ..................................................
EY928188       <-- ..................................................
EY902120       <-- ..................................................
FD565462       <-- ..................................................
FD565488       <-- ..................................................
EY932466       --> GTATAGACATTTCGACACCGCAAAGATATATGGATCAGAAGAAGCTCTAG
FD979920       --> GTATAGACATTTCGACACCGCAAAGATATATGGATCAGAAGAAGCTCTAG
EY905765       --> GTATAGACATTTCGACAACGCAAAGATATATGGATCAGAAGAAGCTCTAG
EV566556       --> ..................................gCAGAAGAAGCTCTAG
FD550909       --> ..................................................
EX887816       --> ..................................................
EW717690       --> ..................................................

               251    -    301
UN21056        --> GAACTGCATTAGGTCAAGCTATCTCCTATGGAACTGTCCAAAGAGAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- ..................................................
FD546811       <-- ..................................................
EY928188       <-- ..................................................
EY902120       <-- ..................................................
FD565462       <-- ..................................................
FD565488       <-- ..................................................
EY932466       --> GAACTGCATTAGGTCAAGCTATCTCCTATGGAACTGTCCAAAGAGAAGAC
FD979920       --> GAACTGCATTAGGTCAAGCTATCTCCTATGGAACTGTCCAAAGAGAAGAC
EY905765       --> GAACTGCATTAGGTCAAGCTATCTCCTATGGAACTGTCCAAAGAGAAGAC
EV566556       --> GAACTGCATTAGGTCAAGCTATCTCCTATGGAACTGTCCAAAGAGAAGAC
FD550909       --> ...............gAGCTATCTCCTATGGAACTGTCCAAAGAGAAGAC
EX887816       --> ..................................................
EW717690       --> ..................................................

               301    -    351
UN21056        --> ATCTTTGTGACTTCAAAGTTATGGTCTAGTGATCACCATGACCCTATCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- ...............................................CTC
FD546811       <-- ..................................................
EY928188       <-- ..................................................
EY902120       <-- ..................................................
FD565462       <-- ..................................................
FD565488       <-- ..................................................
EY932466       --> ATCTTTGTGACTTCAAAGTTATGGTCTAGTGATTACCATAACCCTATCTC
FD979920       --> ATCTTTGTGACTTCAAAGTTATGGTCTAGTGATCACCATGACCCTATCTC
EY905765       --> ATCTTTGTGACTTCAAAGTTATGGTCTAGTGATCACCATGACTCTATCTC
EV566556       --> ATCTTTGTGACTTCAAAGTTATGGTCTAGTGATCACCATAACCCTATCTC
FD550909       --> ATCTTTGTGACTTCAAAGTTATGGTCTAGTGATCACCATGACCCTATCTC
EX887816       --> ..................................................
EW717690       --> ..................................................

               351    -    401
UN21056        --> TGCCCTCACACAAACTCTCAAGACAATGGGGCTAGAGTATCTAGATAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- TGCCCTCACACAAACTCTCAAGACAATGGGGCTAGAGTATCTAGATAACT
FD546811       <-- ........CACAAACTCTCA-GAC-ATGGGGCTAGAGTATCTAGATAACT
EY928188       <-- ..................................................
EY902120       <-- ..................................................
FD565462       <-- ..................................................
FD565488       <-- ..................................................
EY932466       --> TGCCCTCACACAAACTCTCAAGACAATGGGGCTAGAGTATCTAGATAACT
FD979920       --> TGCCCTCACACAAACTCTCAAGACAATGGGGCTAGAGTATCTAGATAACT
EY905765       --> TGCCCTCACACAAACTCTCAAGACAATGGGGCTAGAGTATCTAGATAACT
EV566556       --> TGCCCTCACACAAACTCTCAAGACAATGGGGCTAGAGTATCTAGATAACT
FD550909       --> TGCCCTCACACAAACTCTCAAGACAATGGGGCTAGAGTATCTAGATAACT
EX887816       --> ..................................................
EW717690       --> ..................................................

               401    -    451
UN21056        --> ACTTGGTGCATTGGCCAATAAAGCTTAAACCAGGAGTGAGTGAGCCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- ACTTGGTGCATTGGCCAATAAAGCTTAAACCAGGATTGAGTGAGCCAATC
FD546811       <-- ACTTGGTGCATTGGCCAATAAAGCTTAAACCAGGAGTGAGTGAGCCCATC
EY928188       <-- .................................................C
EY902120       <-- ..................................................
FD565462       <-- ..................................................
FD565488       <-- ..................................................
EY932466       --> ACTTGGTGCATTGGCCAATAAAGCTTAAACCAGGAGTGAGTGAGCCCATC
FD979920       --> ACTTGGTGCATTGGCCAATAAAGCTTAAACCAGGATTGAGTGAGCCAATC
EY905765       --> ACTTGGTGCATTGGCCAATAAAGCTTAAACCAGGAGTGAGTGAGCCCATC
EV566556       --> ACTTGGTGCATTGGCCAATAAAGCTTAAACCAGGAGTGAGTGAGCCCATC
FD550909       --> ACTTGGTGCATTGGCCAATAAAGCTTAAACCAGGAGTGAGTGAGCCCATC
EX887816       --> ..................................................
EW717690       --> ..................................................

               451    -    501
UN21056        --> CCAAAGGAAGAGGAGTTTGAGAAAGATGTAGGAATTGAAGAAACTTGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- CCAAAGGAAGAGGAGTTTGAGAAAGATGTAGGAATTGAAGAAACTTGGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD546811       <-- CCAAAGGAAGAGGAGTTTGAGAAAGATGTAGGAATTGAAGAAACTTGGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY928188       <-- CCAAAGGAAGAAGAGTTTGAGAAAGATGTAGGAATTGAAGAAACTTGGCA  Raphanus sativus var. oleiformis
EY902120       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD565462       <-- ..................................................  Raphanus sativus var. oleiformis
FD565488       <-- ..................................................  Raphanus sativus var. oleiformis
EY932466       --> CCAAAGGAAGAAGAGTTTGAGAAAGATGTAGGAATTGAAGAAACTTGGCA  Raphanus sativus var. oleiformis
FD979920       --> CCAAAGGAAGAGGAGTTTGAGAAAGATGTAGGAATTGAAGAAACTTGGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY905765       --> CCAAAGGAAGAGGAGTTTGAGAAAGATGTAGGAATTGAAGAAACTTGGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566556       --> CCAAAGGAAGAAGAGTTTGAGAAAGATGTAGGAATTGAAGAAACTTGGCA  Raphanus raphanistrum subsp. landra
FD550909       --> CCAAAGGAAGAGGAGTTTGAGAAAGATGTAGGAATTGAAGAAACTTGGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX887816       --> ..................................................  Raphanus sativus var. oleiformis
EW717690       --> ..................................................  Raphanus sativus var. oleiformis

               501    -    551
UN21056        --> AGGCATGGAGAGATGCTTAGAGATGGGTTTGTGTAGATCCATTGGTGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- AGGCATGGAGAGATGCTTAGAGATGGGTTTGTGTAGATCCATTGGTGTTA
FD546811       <-- AGGCATGGAGAGATGCTTAGAGATGGGTTTGTGTAGATCCATTGGTGTTA
EY928188       <-- AGGCATGGAGAGATGCTTAGAGATGGGTTTGTGTAGATCCATTGGTGTTA
EY902120       <-- ..................................................
FD565462       <-- ..................................................
FD565488       <-- ..................................................
EY932466       --> AGGCATGGAGAGATGCTTAGAGATGGGTTTGTGTAGATCCATTGGTGTTA
FD979920       --> AGGCATGGAGAGATGCTTAGAGATGGGTTTGTGTAGATCCATTGGTGTTA
EY905765       --> AGGCATGGAGAGATGCTTAGAGATGGGTTTGTGTAGATCCATCGGTGTTA
EV566556       --> AGGCATGGAGAGATGCTTAGAGATGGGTTTGTGTAGATCCATTGGTGTTA
FD550909       --> AGGCATGGAGAGATGCTTAGAGATGGGTTTGTGTAGATCCATTGGTGTTA
EX887816       --> ..................................................
EW717690       --> ..................................................

               551    -    601
UN21056        --> GCAACTTCTCTTCTAAAAAGATCTATGATCTCCTCGATTTTGCTTCTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- GCAACTTCTCTTCTAAAAAGATCTATGATCTCCTCGATTTTGCTTCTGTC
FD546811       <-- GCAACTTCTCTTCTAAAAAGATCTATGATCTCCTCGATTTTGCTTCTGTC
EY928188       <-- GCAACTTCTCTTCTAAAAAGATCTATGATCTCCTCGATTTTGCTTCTGTC
EY902120       <-- .....................................TTTTGCTTCTGTC
FD565462       <-- ..................................................
FD565488       <-- ..................................................
EY932466       --> GCAACTTCTCTTCTAAAAAGATCTATGATCTCCTCGATTTTGCTTCTGTC
FD979920       --> GCAACTTCTCTTCTAAAAAGATCTATGATCTCCTCGATTTTGCTTCTGTC
EY905765       --> GCAACTTCTCTTCTAAAAAGATCTATGATCTCCTCGATTTTGCTTCTGTC
EV566556       --> GCAACTTCTCTTCTAAAAAGATCTATGATCTCCTCGATTTTGCTTCTGTC
FD550909       --> GCAACTTCTCTTCTAAAAAGATCTATGATCTCCTCGATTTTGCTTCTGTC
EX887816       --> ....................................tTTTTGCTTCTGTC
EW717690       --> ..................................................

               601    -    651
UN21056        --> TATCCTTCC-GTTAACCAGGTGGAGATGCATCC-A-TTGTGGAGACAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- TATCCTTCC-GTTAACCAGGTGGAGATGCATCC-A-TTGTGGAGACAAAG
FD546811       <-- TATCCTTCC-GTTAACCAGGTGGAGATGCATCC-A-TTGTGGAGACAAAG
EY928188       <-- TATCCTTCC-GTTAACCAGGTGGAGATGCATCC-A-TTGTGGAGACAAAG
EY902120       <-- TATCCTTCC-GTTAACCAGGTGGAGATGCATCC-A-TTGTGGAGACAAAG
FD565462       <-- ..................................................
FD565488       <-- ..................................................
EY932466       --> TATCCTTCC-GTTAACCAGGTGGAGATGCATCC-A-TTGTGGAGACAAAG
FD979920       --> TATCCTTCC-GTTAACCAGGTGGAGATGCATCC-A-TTGTGGAGACAAAG
EY905765       --> TATCCTTCC-GTTAACCAGGTGGAGATGCATCC-A-TTGTGGAG......
EV566556       --> TATCCTTCC-GCTAACCAGGTGGAGATGCATCC-A-TTGTGGAGACAAAG
FD550909       --> TATCCTTCC-GTTAACCAGGTGGAGATGCATCC-A-TTGTGGAGACAAAG
EX887816       --> TATCCTTCCCGTTAACCAGGTGGAGATGCATCCCATTTGTGGAGACAAAG
EW717690       --> ..................................................

               651    -    701
UN21056        --> CAAGCTAAGGAAAGTGTGTAACGAGAACAAGATCCATGTAAGTGGATATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- CAAGCTAAGGAAAGTGTGTAACGAGAACAAGATCCATGTAAGTGGATATT
FD546811       <-- CAAGCTAAGGAAAGTGTGTAACGAGAACAAGATCCATGTAAGTGGATATT
EY928188       <-- CAAGCTAAGGAAAGTGTGTAACGAGAACAAGATCCATGTAAGTGGATATT
EY902120       <-- CAAGCTAAGGAAAGTGTGTAACGAGAACAAGATCCATGTAAGTGGATATT
FD565462       <-- ..................................................
FD565488       <-- ..................................................
EY932466       --> CAAGCTAAAGAAAGTGTGTAACGAGAACAAGATCCATGTAAGTGGATAT-
FD979920       --> CAAGCTAAAGAAAGTGTGTAACGAGAACAAGATCCATGTAAGTGGATAT-
EY905765       --> ..................................................
EV566556       --> CAAGCTAAGGAAAGTGTGTAACGAGAACAAGATCCATGTAAGTGGATATT
FD550909       --> CAAGCTAAGGAAAGTGTGTAACGAGAACAAGATCCATGTAAGTGGATATT
EX887816       --> CAAGCTAAGGAAAGTGTGTAACGAGAACAAGATCCATGCAAGTGGATATT
EW717690       --> ..................................................

               701    -    751
UN21056        --> CACCACTTGGTGGGCCAGGAAATTGTTGGGGATCAACGGCTGTGATTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- CACCACTTGGTGGGCCAGGAAATTGTTGGGGATCAACGGCTGTGATTGAA
FD546811       <-- CACCACTTGGTGGGCCAGGAAATTGTTGGGGATCAACGGCTGTGATTGAA
EY928188       <-- CACCACTTGGTGGGCCAGGAAATTGTTGGGGATCAACGGCTGTGATTGAA
EY902120       <-- CACCACTTGGTGGGCCAGGAAATTGTTGGGGATCAACGGCTGTGATTGAA
FD565462       <-- .....................................GGCTGTGATTGAA
FD565488       <-- ..................................................
EY932466       --> CACCACTTGGTGGGCCAGGAAATTGTTGGGGATCA-CGGCTGTGATTGA-
FD979920       --> CACCACTTGGTGGGC-AGGAAATTGTTGGGGATC................
EY905765       --> ..................................................
EV566556       --> CACCACTTGGTGGGCCAGGAAATTGTTGTGGATCAACGGCTGTGATTGAA
FD550909       --> CACCACTTGGTGGGCCAGGAAATTGTTGGGGATCAACGGCTGTGATTGAA
EX887816       --> CACCACTTGGTGGGCCAGGAAATTGTTGGGGATCAACGGCTGTGATTGAA
EW717690       --> ..................................................

               751    -    801
UN21056        --> CATCCTGTCATCAAATCTATTGCTCTCAAGCATAGTGTCACTCCAGCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- CATCCTGTCATCAAATCTATTGCTCTCAAGCATAGTGTCACTCCAGCTCA
FD546811       <-- CATCCTGTCATCAAATCTATTGCTCTCAAGCATAGTGTCACTCCAGCTCA
EY928188       <-- CATCCTGTCATCAATTCTATTGCTCTCAAGCATAGTGTCACTCCAGCTCA
EY902120       <-- CATCCTGTCATCAAATTTATTGCTCTCAAGCATAGTGTCACTCCAGCTCA
FD565462       <-- CATCCTGTCATCAAATCTATTGCTCTCAAGCATAGTGTCACTCCAGCTCA
FD565488       <-- ..........................CAAGCATAGTGTCACTCCAGCTCA
EY932466       --> CATCCTGTCATCAA-TCTAT-GCTCTCA-GCATAGTGTCACTCCAGCTCA
FD979920       --> ..................................................
EY905765       --> ..................................................
EV566556       --> CATCCTGTCATCAATTCTATTGCTCTCAAGCATAGTGTCACTCCAGCTCA
FD550909       --> CATCCTGTCATCAAATCTATTGCTCTCAAGCATAGTGTCACTCCAGCTCA
EX887816       --> CATCCTGTCATCAAATCTATTGCTCTCAAGCATAGTGTCACTCCAGCTCA
EW717690       --> ..................................................

               801    -    851
UN21056        --> GGTGGCTCTAAGGTGGGGAATGTCAAAGGGGGCAAGTGTGATAGTGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- GGTGGCTCTAAGGTGGGGAATGTCAAAGGGGGCAAGTGTGATAGTGAAAA
FD546811       <-- GGTGGCTCTAAGGTGGGGAATGTCAAAGGGGGCAAGTGTGATAGTGAAAA
EY928188       <-- GGTGGCTCTAAGGTGGGGAATGTCAAAGGGGGCAAGTGTGATAGTTAAAA
EY902120       <-- GGTGGCTTTAAGGTGGGGAATGTCAAAGGGGGCAAGTGTGATAGTGAAAA
FD565462       <-- GGTGGCTTTAAGGTGGGGAATGTCAAAGGGAGCAAGTGTGATAGTGAAAA
FD565488       <-- GGTGGCTTTAAGGTGGGGAATGTCAAAGGGAGCAAGTGTGATAGTGAAAA
EY932466       --> Gtgg..............................................
FD979920       --> ..................................................
EY905765       --> ..................................................
EV566556       --> GGTGGCTCTAAGGTGGGGAATGTCAAAGGGGGCAAGTGTGATAGTTAAAA
FD550909       --> GGTGGCTCTAAGGTGGGGAATGTCAAAGGGGGCAAGTGTGATAGTGAAAA
EX887816       --> G-TGGCTCT.........................................
EW717690       --> ..................................................

               851    -    901
UN21056        --> GTTTTAATGGAGAAAGAATGAGAGAAAACAAGAGAGCCTTGGATATAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- GTTTTAATGGAGAAAGAATGAGAGAAAACAAGAGAGCCTTGGATATAAAA
FD546811       <-- GTTTTAATGGAGAAAGAATGAGAGAAAACAAGAGAGCCTTGGATATAAAA
EY928188       <-- GTTTTAATGGAGAA--AATGAGAGAAAACAAGAGAGCCTTGGATATAAAA
EY902120       <-- GTTTTAATGGAGAAAGAATGAGAGAAAACAAGAGAGCCTTGGATATAAAA
FD565462       <-- GTTTTAATGGAGAAAGAATGAGAGAAAACAAGAGAGCCTTGGATATAAAA
FD565488       <-- GTTTTAATGGAGAAAGAATGAGAGAAAACAAGAGAGCCTTGGATATAAAA
EY932466       --> ..................................................
FD979920       --> ..................................................
EY905765       --> ..................................................
EV566556       --> GTTTTAATGGAGAAAGAATGAGAGAAAACAAGAGAGCCTTGGATATAAAA
FD550909       --> GTTTTAATGGAGAAAGAATGAGAGAAAACAAGAGAGCCTTGGATATAAAA
EX887816       --> ..................................................
EW717690       --> ..................................................

               901    -    951
UN21056        --> TTGGATGATCAAGACTTATCATTCATTGACCAATTGGAGGAGTGGAAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- TTGGATGATCAGGACTTATCATTCATTGACCAATTGGAGGAGTGGAAGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD546811       <-- TTGGATGATCAGGACTTATCATTCATTGACCAATTGGAGGAGTGGAAGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY928188       <-- TTGGATGATCAAGACGTATCATTCATTGACCAATTGGAGGAGTGGAAGAT  Raphanus sativus var. oleiformis
EY902120       <-- TTGGATGATCAGGACTTATCATTCATTGACCAATTGGAGGAGTGGAAGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD565462       <-- TTGGATGATCAAGACTTATCATTCATTGACCAATTGGAGGAGAGGAAGAT  Raphanus sativus var. oleiformis
FD565488       <-- TTGGATGATCAAGACTTATCATTCATTGACCAATTGGAGGAGAGGAAGAT  Raphanus sativus var. oleiformis
EY932466       --> ..................................................  Raphanus sativus var. oleiformis
FD979920       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY905765       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566556       --> TTGGATGATCAAGACGTATCATTCATTGACCAATTGGAGGAGTGGAAGAT  Raphanus raphanistrum subsp. landra
FD550909       --> TTGGATGATCA-GACTTATCATTCATTGACCAATTGGAGGAGTGGAAGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX887816       --> ..................................................  Raphanus sativus var. oleiformis
EW717690       --> ....gTGATCAAGACTCATCATTCATTGACCAATTGGAGGAGAGGAGGAT  Raphanus sativus var. oleiformis

               951    -   1001
UN21056        --> CATGAGGGGAGATTTCCTTGTTAATCAAACTACAAGCCCTTACAAATCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- CATGAGGGGAGATTTCCTTGTTAATCAAACTACAAGCCCTTACAAATCGA
FD546811       <-- CATAAGGGGAGATTTCCTTGTTAATCAAACTACAAGCCCTTACAAATCGA
EY928188       <-- CATGAGGGGAGATTTCCTTGTTAATCAAACTACAAGCCCTTACAAATCGA
EY902120       <-- CATGAGGGGAGATTTCCTTGTTAATCAAACTACAAGCCCTTACAAATCGA
FD565462       <-- CATGAGGGGAGATTTCCTTGTTAATCAAACTACAAGCCCTTACAAATCGA
FD565488       <-- CATGAGGGGAGATTTCCTTGTTAATCAAACTACAAGCCCTTACAAATCGA
EY932466       --> ..................................................
FD979920       --> ..................................................
EY905765       --> ..................................................
EV566556       --> CATGAGGGGAGATTTCCTTGTTAATCAAACTACAAGCCCTTACAAATCGA
FD550909       --> CATAAAGGGAGATTTCCTTGTTAATCAA-CTACAAGCCCTTACAAATCGA
EX887816       --> ..................................................
EW717690       --> CATGAGGGGAGATTTCCTTGTTAATCAAACTACAAGCCCTTACAAATCGA

               1001   -   1051
UN21056        --> TCCAACAACTTTGGGACGATGAGATATAATTGATTAGGGTTTCACATAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- TCCAACAACTTTGGGACGATGAGATATAATTGATTAGGGTTTCACATAAC
FD546811       <-- TCCAACAACTTTGGGACGATGAGATATAATTGATTAGGGTTTCACATAAC
EY928188       <-- TCCAACAACTTTGGGACGATGAGATATAATTGATTAGGGTTTCGCATAAC
EY902120       <-- TCCAACAACTTTGGGACGATGAGATATAATTGATTAGGGTTTCACATAAC
FD565462       <-- TCCAACAACTTTGGGACGATGAGATATAATTGATTAGGGATTCACATAAC
FD565488       <-- TCCAACAACTTTGGGACGATGAGATATAATTGATTAGGGATTCACATAAC
EY932466       --> ..................................................
FD979920       --> ..................................................
EY905765       --> ..................................................
EV566556       --> TCCAACAACTTTGGGACGATGAGATATAATTGATTAGGGTTTCACATAAC
FD550909       --> TCCAACAACTTTGGGACGATGAGA..........................
EX887816       --> ..................................................
EW717690       --> TCCAACAACTTTGGGACGATGAGATATAATTGATTAGGGATTCACATAAC

               1051   -   1101
UN21056        --> TTCATCCAAAATGTAATTTCATCTTCTGTTATGTTGCTTATGATCATGG-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- TTCATCCAAAATGTAATTTCATCTTCTGTTATGTTGCTTATGATCATGG-
FD546811       <-- TTCATCCAAAATGTAATTTCATCTTCTGTTATGTTGCTTATGATCATGG-
EY928188       <-- TTCATCCAAAATGTAATTTCATCTTCTGTTATGTTGCTTGTGATCATGG-
EY902120       <-- TTCATCCAAAATGTAATTTCATCTTCTGTTATGTTGCTTATGATCATGG-
FD565462       <-- TTCATCCAAAATGTAATTTCATCTTCTGTTATGTTGCTTATGATCATGG-
FD565488       <-- TTCATCCAAAATGTAATTTCATCTTCTGTTATGTTGCTTATGATCATGG-
EY932466       --> ..................................................
FD979920       --> ..................................................
EY905765       --> ..................................................
EV566556       --> TTCATCCAAAATGTAATTTCATCTTCTGTTATGTTGCTTATGATCATGGG
FD550909       --> ..................................................
EX887816       --> ..................................................
EW717690       --> TTCATCCAAAATGTAATTTCATCTTCTGTTATGTTGCTTATGATCATGG-

               1101   -   1151
UN21056        --> TTTTCTCATTTGGTATATAAAGTCATTACAACATGAAAGAACACCATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- TTTTCTCATTTGGT....................................
FD546811       <-- TTTTCTCATTTGGTATATAAAGTCATTACAACATGAAAGAACACCATTTT
EY928188       <-- TTTTCTCATTTGGTA...................................
EY902120       <-- TTTTCTCATTTGGTA...................................
FD565462       <-- TTTTCTCATTTGGTATATAAAGTCATTACAACATGAAAGAACACCATCTT
FD565488       <-- TTTTCTCATTTGGTATATAAAGTCATTACAACATGAAAGAACACCATCTT
EY932466       --> ..................................................
FD979920       --> ..................................................
EY905765       --> ..................................................
EV566556       --> TTTTCTCATT........................................
FD550909       --> ..................................................
EX887816       --> ..................................................
EW717690       --> TTTTCTCATTTGGTA...................................

               1151   -   1201
UN21056        --> GCTTGATTTGGTTTGATCCTCTTTTTTCACGCAACATATAGTTTTTTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975889       <-- ..................................................
FD546811       <-- GCTc..............................................
EY928188       <-- ..................................................
EY902120       <-- ..................................................
FD565462       <-- GCTTGATTTGGTTTGATCCTCTTTTTTCACGCAACATATAGTTTTTTTCC
FD565488       <-- GCTTGATTTGGTTTGATCCTCTTTTTTCACGCAACATATAGTTTTTTTCC
EY932466       --> ..................................................
FD979920       --> ..................................................
EY905765       --> ..................................................
EV566556       --> ..................................................
FD550909       --> ..................................................
EX887816       --> ..................................................
EW717690       --> ..................................................