RadishBase

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Alignment for radish unigene UN21059

               1      -     51
UN21059        --> GGGGGAAGGAGTTATAAAGTAGTCTCCTCTCCTCACTAGGATTTTTTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- ..................................................
EV573502       <-- ..................................................
FD982607       <-- ..................................................
EY909320       <-- ..................................................
FD974833       <-- ..................................................
EV568872       --> GGGGGAAGGAGTTATAAAGTAGTCTCCTCTCCTCACTAGGATTTTTTATT
FD558854       --> ..........GTTATAAAGTAGTCTCCTCTCCTCACTAGGATTTTTTATT
FD986337       --> .............................................ggATT
EY913008       --> ..........................................gattggtg
FD550061       --> ..................................................
FD978628       --> ..................................................

               51     -    101
UN21059        --> GGTGCGAAGAAGGAAAGAGTAGATGGCGCCAGTTATTCAGAGCTCACAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- ..................................................
EV573502       <-- ..................................................
FD982607       <-- ..................................................
EY909320       <-- ..................................................
FD974833       <-- ..................................................
EV568872       --> GGTGCGAAGAAGGAAAGAGTAGATGGCGCCAGTTATTCAGAGCTCACAAC
FD558854       --> GGTGCGAAGAAGGAAAGAGTAGATGGCGCCAGTTATTCAGAGCTCACAAC
FD986337       --> GGTGCGAAGAAGGAAAGAGTAGATGGCGCCAGTTATTCAGAGCTCACAAC
EY913008       --> tgtgtaAAGGAGGAAAGCGTA-ATGGCGCCAGTTATTCAGAGCTCACAGC
FD550061       --> ..................................................
FD978628       --> ..................................................

               101    -    151
UN21059        --> CGTGGGTTGAGAAATACCGGCCGAAGCAAGTGAAGGACGTGGCGCATCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- ..................................................
EV573502       <-- ..................................................
FD982607       <-- ..................................................
EY909320       <-- ..................................................
FD974833       <-- ..................................................
EV568872       --> CGTGGGTTGAGAAATACCGGCCGAAGCAAGTGAAGGACGTGGCGCATCAG
FD558854       --> CGTGGGTTGAGAAATACCGGCCGAAGCAAGTGAAGGGCGTGGCGCATCAG
FD986337       --> CGTGGGTTGAGAAATACCGGCCGAAGCAAGTGAAGGACGTGGCGCATCAG
EY913008       --> CATGGGTTGAGAAATACCGGCCGAAGCAAGTGAAGGACGCGGCGCATCAG
FD550061       --> ..................................................
FD978628       --> ..................................................

               151    -    201
UN21059        --> GAGGAGGTGGTTCGAGTACTCACCAACACTCTCGAGACTGCTAACTGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- ..................................................
EV573502       <-- ..................................................
FD982607       <-- ..................................................
EY909320       <-- ..................................................
FD974833       <-- ..................................................
EV568872       --> GAGGAGGTGGTTCGAGTACTCACCAACACTCTCGAGACTGCTAACTGTCC
FD558854       --> GAGGAGGTGGTTCGAGTACTCACCAACACTCTCGAGACTACTAACTGTCC
FD986337       --> GAGGAGGTGGTTCGAGTACTCACCAACACTCTCGAGACTGCTAACTGTCC
EY913008       --> GAGGAGGTGGTTCGAGTCCTCACCAACACTCTCGAGACTGCTAACTGTCC
FD550061       --> ..................................................
FD978628       --> ..................................................

               201    -    251
UN21059        --> GCACATGCTCTTTTATGGACCACCAGGAACCGGGAAAACCACTACCGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- ..................................................
EV573502       <-- ..................................................
FD982607       <-- ..................................................
EY909320       <-- ..................................................
FD974833       <-- ..................................................
EV568872       --> GCACATGCTCTTTTATGGACCACCAGGAACCGGGAAAACCACTACCGCAC
FD558854       --> GCACATGCTCTTTTATGGACCACCAGGAACCGGGAAAACCACTACCGCAC
FD986337       --> GCACATGCTCTTTTATGGACCACCAGGAACCGGGAAAACCACTACCGCAC
EY913008       --> GCACATGCTCTTTTATGGACCACCAGGAACCGGTAAAACCACTACCGCAC
FD550061       --> ..................................................
FD978628       --> ..................................................

               251    -    301
UN21059        --> TTGCCATCGCCCACCAGCTATTTGGACCTGAGTTGTACAAGTCTAGGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- ..................................................
EV573502       <-- ..................................................
FD982607       <-- ..................................................
EY909320       <-- ..................................................
FD974833       <-- ..................................................
EV568872       --> TTGCCATCGCCCACCAGCTATTTGGACCTGAGTTGTACAAGTCTAGGGTG
FD558854       --> TTGCCATCGCCCACCAGCTATTTGGACCTGAGTTGTACAAGTCTAGGGTG
FD986337       --> TTGCCATCGCCCACCAGCTATTTGGACCTGAGTTGTACAAGTCTAGGGTG
EY913008       --> TTGCCATCGCCCACCAGCTATTTGGACCTGAGTTGTATAAGTCTAGGGTG
FD550061       --> .....................ggGGACCTGAGTTGTATAAGTCTAGGGTG
FD978628       --> ..................................................

               301    -    351
UN21059        --> TTGGAGCTGAATGCAAGTGATGACAGAGGGATTAATGTTGTTCGGACGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- ..................................................
EV573502       <-- ..................................................
FD982607       <-- ..................................................
EY909320       <-- ..................................................
FD974833       <-- ..................................................
EV568872       --> TTGGAGCTGAATGCAAGTGATGACAGAGGGATTAATGTTGTTC--ACGAA
FD558854       --> TTGGAGCTGAATGCAAGTGATGACAGAGGGATTAATGTTGTTCGGACGAA
FD986337       --> TTGGAGCTGAATGCAAGTGATGACAGAGGGATTAATGTTGTTCGGACGAA
EY913008       --> TTGGAGCTGAATGCAAGTGATGACAGAGGGATTAATGTTGTTCGGACGAA
FD550061       --> TTGGAGCTGAATGCAAGTGATGACAGAGGGATTAATGTTGTTCGGACGAA
FD978628       --> ..................................................

               351    -    401
UN21059        --> GATCAAGGATTTTGCTGCTGTTGCTGTTGGGTCCAGTAACCGTCAAGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- ..................................................
EV573502       <-- ..................................................
FD982607       <-- ..................................................
EY909320       <-- ..................................................
FD974833       <-- ..................................................
EV568872       --> GATCAAGGATTTTGCTGCTGTTGCTGTTGGGTCCAGTAACCGTCAAGGTG
FD558854       --> GATCAAGGATTTTGCTGCTGTTGCTGTTGGGTCCAGTAACCGTCAAGGTG
FD986337       --> GATCAAGGATTTTGCTGCTGTTGCTGTTGGGTCCAGTAACCGTCAAGGTG
EY913008       --> GATCAAAGATTTTGCTGCTGTTGCTGTTGGGTCCAGTAACCGTCAAGGTG
FD550061       --> GATCAAAGATTTTGCTGCTGTTGCTGTTGGGTCCAGTAACCGTCAAGGTG
FD978628       --> ..................................................

               401    -    451
UN21059        --> GTTATCCTTGCCCATCGTTTAAGATCATTATCCTAGATGAGGCTGATTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- .........GCCCATCGTTTAAGATCATTATCCTAGATGAGGCTGATTCG
EV573502       <-- ..................................................
FD982607       <-- ..................................................
EY909320       <-- ..................................................
FD974833       <-- ..................................................
EV568872       --> GTTATCCTTGCCCATCGTTTAAGATCATTATCCTAGATGAGGCTGATTCG
FD558854       --> GTTATCCTTGCCCATCGTTTAAGATCATTATCCTAGATGAGGCTGATTCG
FD986337       --> GTTATCCTTGCCCATCGTTTAAGATCATTATCCTAGATGAGGCTGATTCG
EY913008       --> GTTATCCTTGCCCATCGTTTAAGATCATTATCCTAGATGAGGCTGATTCG
FD550061       --> GTTATCCTTGCCCATCGTTTAAGATCATTATCCTAGATGAGGCTGATTCG
FD978628       --> ..................................................

               451    -    501
UN21059        --> ATGACTGAAGATGCTCAGAATGCCTTGAGGCGCACAATGGAAACTTACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- ATGACTGAAGATGCTCAGAATGCCTTGAGGCGCACAATGGAAACTTACTC
EV573502       <-- ATGACTGAAGATGCTCAGAATGCCTTGAGGCGCACAATGGAAACTTACTC
FD982607       <-- ...........................AGGCGCACAATGGAAACTTACTC
EY909320       <-- ..................................................
FD974833       <-- ..................................................
EV568872       --> ATGACTGAAGATGCTCAGAATGCCTTGAGGCGCACAATGGAAACTTACTC
FD558854       --> ATGACTGAAGATGCTCAGAATGCCTTGAGGCGCACAATGGAAACTTACTC
FD986337       --> ATGACTGAAGATGCTCAGAATGCCTTGAGGCGCACAATGGAAACTTACTC
EY913008       --> ATGACGGAAGATGCTCAGAACGCCTTGAGGCGCACAATGGAAACTTACTC
FD550061       --> ATGACGGAAGATGCTCAGAACGCCTTGAGGCGCACAATGGAAACTTACTC
FD978628       --> ..................................................

               501    -    551
UN21059        --> CAAAGTCACCAGATTCTTCTTCATATGTAATTATATCAGCAGGATCATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- CAAAGTCACCAGATTCTTCTTCATATGTAATTATATCAGCAGGATCATAG
EV573502       <-- CAAAGTCACCAGATTCTTCTTCATATGTAATTATATCAGCAGGATCATAG
FD982607       <-- CAAAGTCACCAGATTCTTCTTCATATGTAATTATATCAGCAGGATCGTAG
EY909320       <-- ............................................TCATAG
FD974833       <-- ..................................................
EV568872       --> CAAAGTCACCAGATTCTTCTTCATATGTAATTATATCAGCAGGATCATAG
FD558854       --> CAAAGTCACCAGATTCTTCTTCATATGTAATTATATCAGCAGGATCATAG
FD986337       --> CAAAGTCACCAGATTCTTCTTCATATGTAATTATATCAGCAGGATCGTAG
EY913008       --> CAAAGTCACCAGATTCTTCTTCATATGTAATTACATCAGCAGGATCATAG
FD550061       --> CAAAGTCACCAGATTCTTCTTCATATGTAATTACATCAGCAGGATCATAG
FD978628       --> ..................................................

               551    -    601
UN21059        --> AGCCTCTTGCTTCAAGATGTGCCAAGTTCAGGTTTAAACCACTTTCTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- AGCCTCTTGCTTCAAGATGTGCCAAGTTCAGATTTAAACCACTTTCTGAA
EV573502       <-- AGCCTCTTGCTTCAAGATGTGCCAAGTTCAGGTTTAAACCACTTTCTGAA
FD982607       <-- AGCCTCTTGCTTCAAGATGTGCCAAGTTCAGGTTTAAACCACTTTCTGAA
EY909320       <-- AGCCCCTTGCTTCAAGATGTGCCAAGTTCAGGTTTAAACCACTTTCTGAA
FD974833       <-- ..................................................
EV568872       --> AGCCTCTTGCTTCAAGATGTGCCAAGTTCAGGTTTAAACCACTTTCTGAA
FD558854       --> AGCCTCTTGCTTCAAGATGTGCCAAGTTCAGATTTAAACCACTTTCTGAA
FD986337       --> AGCCTCTTGCTTCAAGATGTGCCAAGTTCAG-TTTAAACCACTTTCTGAA
EY913008       --> AGCCCCTTGCTTCAAGATGTGCCAAGTTCAGGTTTAAACCACTTTCTGAA
FD550061       --> AGCCCCTTGCTTCAAGATGTGCCAAGTTCAGGTTTAAACCACTTTCTGAA
FD978628       --> ..................................................

               601    -    651
UN21059        --> GAAGTCATGAGTAACCGTATCTTGCATATTTGTAATGAAGAAGGTCTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- GAAGTCATGAGTAACCGTATCTTGCATATTTGTAATGAAGAAGGTCTCAA
EV573502       <-- GAAGTCATGAGTAACCGTATCTTGCATATTTGTAATGAAGAAGGTCTCAA
FD982607       <-- GAAGTCATGAGTAACCGTATCTTGCATATTTGTAATGAAGAAGGTCTCAA
EY909320       <-- GAAGTCATGAGTAACCGTATCTTGCATATTTGTAATGAAGAAGGTCTCAA
FD974833       <-- ..................................................
EV568872       --> GAAGTCATGAGTAACCGTATCTTGCATATTTGTAATGAAGAAGGTCTCAA
FD558854       --> GAAGTCATGAGTAACCGTATCTTGCATATTTGTAATGAAGAAG-TCTCAA
FD986337       --> GAAGTCATGAGTAACCGTATCTTGC.........................
EY913008       --> GAAGTCATGAGTAACCGTATCTTGCATATTTGTAATGAAGAAAGTCTCAA
FD550061       --> GAAGTCATGAGTAACCGTATCTTGCATATTTGTAATGAAGAAGGTCCCAA
FD978628       --> ..................................................

               651    -    701
UN21059        --> CCTTGGTGGAGAGGCTCTTTCAACTTTAAGCATCATATCACAAGGTGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- CCTTGGTGGAGAGGCTCTTTCAACTTTAAGCATCATATCACAAGGTGATC  Raphanus raphanistrum subsp. landra
EV573502       <-- CCTTGGTGGAGAGGCTCCTTCAACTTTAAGCATCATATCACAAGGTGATC  Raphanus raphanistrum subsp. landra
FD982607       <-- CCTTGGTGGAGAGGCTCTTTCAACTTTAAGCATCATATCACAAGGTGATC  Raphanus raphanistrum subsp. landra
EY909320       <-- CCTTGGTGGAGAGGCTCTTTCAACTTTGAGTATCATATCACAAGGTGATC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD974833       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV568872       --> CCTTGGTGGAGAGGCTCCTTCAACTTTAAGCATCATATCACAAGGTGATC  Raphanus raphanistrum subsp. landra
FD558854       --> CCTTGGTGGAGAGGCTCTTTCAACTTTAAGCATCATATCACAAGGTGATC  Raphanus raphanistrum subsp. landra
FD986337       --> ..................................................  Raphanus raphanistrum subsp. landra
EY913008       --> CCTTGGTGGAGAGGCTCTTTCAACTTTGAGTATCATATCACAAGGTGATC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550061       --> CCTTGGTGGAGAGGCTCTTTCAACTTTGAGTATCATATCACAAGGTGATC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978628       --> .................................gATATCACAAGGTGATC  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN21059        --> TCCGTAGGGCCATCACGTATCTGCAGAGTGGTGCTCGGTTGTTTGGATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- TCCGTAGGGCCATCACGTATCTGCAGAGTGGTGCTCGGTTGTTTGGATCA
EV573502       <-- TCCGTAGGGCCATCACGTATCTGCAGAGTGGTGCTCGGTTGTTTGGATCA
FD982607       <-- TCCGTAGGGCCATCACGTATCTGCAGAGTGGTGCTCGGTTGTTTGGATCA
EY909320       <-- TCCGTAGGGCCATCACGTATCTGCAGAGTGGTGCTCGGTTGTTTGGATCA
FD974833       <-- .......................CAGAGTGGTGCTCGGTTGTTTGGATCA
EV568872       --> TCCGTAGGGCCATCACGTATCTGCAGAGTGGTGCTCGGTTGTTTGGATCA
FD558854       --> TCCGTAGGGCCATCACGTATCTGCAGAGTGGTGCTCG.............
FD986337       --> ..................................................
EY913008       --> TCCGTAGGGCCATCACGTATCTGCAGAG......................
FD550061       --> TCCGTAGGGCCATCACGTATCTGCAGAGTGGTGCTCGGTTGTTTGGATCA
FD978628       --> TCCGTAGGGCCATCACGTATCTGCAGAGTGGTGCTCGGTTGTTTGGATCA

               751    -    801
UN21059        --> ACAATAACTTCTACGGATTTACTCAATGTGTCTGGGGTTGTCCCTCTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- ACAATAACTTCTACGGATTTACTCAATGTGTCTGGGGTTGTCCCTCTGGA  Raphanus raphanistrum subsp. landra
EV573502       <-- ACAATAACTTCTACGGATTTACTCAATGTGTCTGGGGTTGTCCCTCTGGA  Raphanus raphanistrum subsp. landra
FD982607       <-- ACAATAACTTCTACGGATTTACTCAATGTGTCTGGGGTTGTCCCTCTGGA  Raphanus raphanistrum subsp. landra
EY909320       <-- ACAATAACTTCGACGGATTTACTCAATGTGTCTGGGGTAGTCCCTCTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD974833       <-- ACAATAACTTCGACGGATTTACTCAATGTGTCTGGGGTAGTCCCTCTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV568872       --> ACAATAACTTCTACGGATTTACTCAATGTGTCTGGGGTTGTCCCTCTGGA  Raphanus raphanistrum subsp. landra
FD558854       --> ..................................................  Raphanus raphanistrum subsp. landra
FD986337       --> ..................................................  Raphanus raphanistrum subsp. landra
EY913008       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550061       --> ACAATAACTTCGACGGATTTACTCAATGTGTCTGGGGTAGTCCCTCTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978628       --> ACAATAACTTCGACGGATTTACTCAATGTGTCTGGGGTAGTCCCTCTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)

               801    -    851
UN21059        --> GGTAGTGAAGAGATTTTTTACTGCATGCAGAAGTGGTGATTTCGATATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- GGTAGTGAAGAGATTTTTTACTGCATGCAGAAGTGGTGATTTCGATATTG
EV573502       <-- GGTAGTGAAGAGATTTTTTACTGCATGCAGAAGTGGTGATTTCGATATTG
FD982607       <-- GGTAGTGAAGAGATTTTTTACTGCATGCAGAAGTGGTGATTTCGATATTG
EY909320       <-- GATAGTGAAGAGATTTTTTACTGCATGCAGAAGTGGTGATTTCGATATTG
FD974833       <-- GGTAGTGAAGAGATTTTTTACTGCATGCAGAAGTGGTGATTTCGATATTG
EV568872       --> G-TAGTGAAGAGATTTTTTACTGCATGCAGAAGTGGTGATTTCGATAT-G
FD558854       --> ..................................................
FD986337       --> ..................................................
EY913008       --> ..................................................
FD550061       --> GATAGTGAAGAGATTTTTTACTGCATGCAGAAGTGGTGATTTCGATATTG
FD978628       --> GGTAGTGAAGAGATTTTTTACTGCATGCAGAAGTGGTGATTTCGATATTG

               851    -    901
UN21059        --> CAAACAAGGAAGTGGACAACATAGTTGCAGAAGGATATCCTGCATCTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- CAAACAAGGAAGTGGACAACATAGTTGCAGAAGGATATCCTGCATCTCAA
EV573502       <-- CAAACAAGGAAGTGGACAACATAGTTGCAGAAGGATATCCTGCATCTCAA
FD982607       <-- CAAACAAGGAAGTGGACAACATAGTTGCAGAAGGATATCCTGCATCTCAA
EY909320       <-- CAAACAAGGAAGTGGACAACATAGTTGCAGAAGGATATCCTGCATCTCAA
FD974833       <-- CAAACAAGGAAGTGGACAACATAGTTGCAGAAGGATATCCTGCATCTCAG
EV568872       --> CAAA..............................................
FD558854       --> ..................................................
FD986337       --> ..................................................
EY913008       --> ..................................................
FD550061       --> CAAACAAGGAAGTGGACAACATAGTTGCAGAAGGATATCCTGCATCTCAA
FD978628       --> CAAACAAGGAAGTGGACAACATAGTTGCAGAAGGATATCCTGCATCTCAG

               901    -    951
UN21059        --> ATCATCAATCAGTTATTTGATATAGTCGTTGAGGCTGGTGATGACATAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- ATCATCAATCAGTTATTTGATATAGTCGTTGAGGCTGGTGATGACATAAC
EV573502       <-- ATCATCAATCAGTTATTTGATATAGTCGTTGAGGCTGGTGATGACATAAC
FD982607       <-- ATCATCAATCAGTTATTTGATATAGTCGTTGAGGCTGGTGATGACATAAC
EY909320       <-- ATCATCAATCAGTTATTTGATATAGTCGTTGAAGCTGGTGATGACATAAC
FD974833       <-- ATCATCAATCAGTTATTTGATATAGTCGTTGAGGCTGGTGATGACATAAC
EV568872       --> ..................................................
FD558854       --> ..................................................
FD986337       --> ..................................................
EY913008       --> ..................................................
FD550061       --> ATCATCAATCAGTTATTTGATATAGTCGTTGAAGCTGGTGATGACATAAC
FD978628       --> ATCATCAATCAGTTATTTGATATAGTCGTTGAGGCTGGTGATGACATAAC

               951    -   1001
UN21059        --> GGACAATCAAAAGGCTAAGATTTGCAAATGTCTAGCTGAAACAGATAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- GGACAATCAAAAGGCTAAGATTTGCAAATGTCTAGCTGAAACAGATAAGC  Raphanus raphanistrum subsp. landra
EV573502       <-- GGACAATCAAAAGGCTAAGATTTGCAAATGTCTAGCTGAAACAGATAAGC  Raphanus raphanistrum subsp. landra
FD982607       <-- GGACAATCAAAAGGCTAAGATTTGCAAATGTCTAGCTGAAACAGATAAGC  Raphanus raphanistrum subsp. landra
EY909320       <-- GGACAATCAAAAGGCTAAGATCTGCAAATGTCTAGCTGAAACAGATAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD974833       <-- GGACAATCAAAAGGCTAAGATCTGCAAATGTCTAGCTGAAACAGATAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV568872       --> ..................................................  Raphanus raphanistrum subsp. landra
FD558854       --> ..................................................  Raphanus raphanistrum subsp. landra
FD986337       --> ..................................................  Raphanus raphanistrum subsp. landra
EY913008       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550061       --> GGACAATCAAA.......................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978628       --> GGACAATCAAAAGGCTAAGATCTGCAAATGTCTAGCTGAAACAGATAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)

               1001   -   1051
UN21059        --> GACTTGTAGATGGTGCGGATGAGTACCTGCAGCTTCTGGACGTGGCAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- GACTTGTAGATGGTGCGGATGAGTACCTGCAGCTTCTGGACGTGGCAAGC
EV573502       <-- GACTTGTAGATGGTGCGGATGAGTACCTGTAGCTTCTGGACGTGGCAAGC
FD982607       <-- GACTTGTAGATGGTGCGGATGAGTACCTGCAGCTTCTGGACGTGGCAAGC
EY909320       <-- GACTTGTAGATGGTGCGGATGAGTACCTGCAGCTTCTGGACGTGGCAAGC
FD974833       <-- GACTTGTAGATGGTGCGGATGAGTACCTGCAGCTTCTGGACGAGGCAAGC
EV568872       --> ..................................................
FD558854       --> ..................................................
FD986337       --> ..................................................
EY913008       --> ..................................................
FD550061       --> ..................................................
FD978628       --> GACTTGTAGATGGTGCGGATGAGTACCTGCAGCTTCTGGACGAGGCAAGC

               1051   -   1101
UN21059        --> AATACAATTACTGCACTCTCAGAAATGGCTCAAGACTACTAAAAGCAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- AATACAATTACTGCACTCTCAGAAATGGCTCAAGACTACTAAAAGCAAAT  Raphanus raphanistrum subsp. landra
EV573502       <-- AATACAATTACTGCACTCTCAGAAATGGCTCAAGACTACTAAAAGCAAAT  Raphanus raphanistrum subsp. landra
FD982607       <-- AATACAATTACTGCACTCTCAGAAATGGCTCAAGACTACTAAAAGCAAAT  Raphanus raphanistrum subsp. landra
EY909320       <-- AATACAATTACTGCACTTTCAGAAATGGCTCAAGACTACTAAA-GCAAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD974833       <-- AATACAATTACTGCACTCTCAGAAATGGCTCAAGACTACTAAA-GCAAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV568872       --> ..................................................  Raphanus raphanistrum subsp. landra
FD558854       --> ..................................................  Raphanus raphanistrum subsp. landra
FD986337       --> ..................................................  Raphanus raphanistrum subsp. landra
EY913008       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550061       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978628       --> AATACAATTACTGCACTCTCAGAAATGGCTCAAGACTACTAAA-GCAAAC  Raphanus raphanistrum subsp. raphanistrum (NY)

               1101   -   1151
UN21059        --> ACCCTCTTAAAGCTCTGCATCTAGTGTTTGAATTTTGGTTTTGCTTTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- ACCCTCTTAAAGCTCTGCATCTAGTGTTTGAATTTTGGTTTTGCTTTGAA  Raphanus raphanistrum subsp. landra
EV573502       <-- ACCCTCTTAAAGCTCTGCATCTAGTGTTTGAATTTTGGTTTTGCTTTGAA  Raphanus raphanistrum subsp. landra
FD982607       <-- ACCCTTTTAAAGCTCTGCATCTAGTGTTTGAATTTTGGTTTTGCTTTGAA  Raphanus raphanistrum subsp. landra
EY909320       <-- ACCCTCT-AAAGCTCTGCATCTAG-ATTTGAATTTTGGTTGTGCTTTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD974833       <-- ACCCTCT-AAAGCTCTGCATCTAG-GTTTGAATTTTGGTTGTGCTTTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV568872       --> ..................................................  Raphanus raphanistrum subsp. landra
FD558854       --> ..................................................  Raphanus raphanistrum subsp. landra
FD986337       --> ..................................................  Raphanus raphanistrum subsp. landra
EY913008       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550061       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978628       --> ACCCTCT-AAAGCTCTGCATCTAG-GTTTGAATTTTGGTTGTGCTTTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               1151   -   1201
UN21059        --> ACGGACATCTACGGTATGAATTGTCATAATGACACTTGTCGAGTTATTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- ACGGACATCTACGGTATGAATTGTCATAATGACACTTGTCGAGTTATTAT
EV573502       <-- ACGGACATTTACGGTATGAATTGTCATAATGACACTTGTCGAGTTATTAT
FD982607       <-- ACGGACATCTACGGTATGAATTGTCATAATGACACTTGTCGAGTTATTAT
EY909320       <-- ACGGACATTTACGGTATGAATTGTCATTATGACACTTGTCGAGTTATTAT
FD974833       <-- ACGGACATCTACGGTATGAATTGTCATAATGACACTTGTCGAGTTATTAT
EV568872       --> ..................................................
FD558854       --> ..................................................
FD986337       --> ..................................................
EY913008       --> ..................................................
FD550061       --> ..................................................
FD978628       --> ACGGACATCTACGGTATGAATTGTCATAATGACACTTGTCGAGTTATTAT

               1201   -   1251
UN21059        --> TATTTAATGTTGACAAACAAAAAAAAACTTGGGGGGTTACAACTGAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- TATTTAATGTTGACAAgc................................
EV573502       <-- TATTTAATGTTGACAAACAAAAAAAAACTTGGGAGGTTACAACTGAAAAA
FD982607       <-- TATTTAATGTTGAC....................................
EY909320       <-- TATTTAATGTTGACA---AAAAAAAAACTTGGGAGGTTACAACTGAAAAA
FD974833       <-- TATTTAATGTTGACTAA-ACAAAAAAACTTGGGGGGTTACAACTGAAAAA
EV568872       --> ..................................................
FD558854       --> ..................................................
FD986337       --> ..................................................
EY913008       --> ..................................................
FD550061       --> ..................................................
FD978628       --> TATTTAATGTTGACTAA-ACAAAAAAACTTGGGGGGTTACAACTGAAAAA

               1251   -   1301
UN21059        --> AAGTT-GGGTAGTCAATTGCAGACAGAACCTGATTCTGCTGTTACCGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- ..................................................
EV573502       <-- AAGTTTGGGTAGT.....................................
FD982607       <-- ..................................................
EY909320       <-- AAaaagttgggtagt...................................
FD974833       <-- AAGTT-GGGTAGTCAATTGCAGACAGAACCTGATTCTGCTGTTACCGTTT
EV568872       --> ..................................................
FD558854       --> ..................................................
FD986337       --> ..................................................
EY913008       --> ..................................................
FD550061       --> ..................................................
FD978628       --> AAGTT-GGGTAGTCAATTGCAGACAGAACCTGATTCTGCTGTTACCGTTT

               1301   -   1351
UN21059        --> TGTGTTGTTAGAACAGATGGTTTTTGAATTTAAAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554667       <-- .......................................
EV573502       <-- .......................................
FD982607       <-- .......................................
EY909320       <-- .......................................
FD974833       <-- TGTGTTGTTAGAACAGATGGTTTTTGAATTT........
EV568872       --> .......................................
FD558854       --> .......................................
FD986337       --> .......................................
EY913008       --> .......................................
FD550061       --> .......................................
FD978628       --> TGTGTTGTTAGAACAGATGGTTTTTGAATTTAAAAAAAA