1      -     51
UN21110        --> GGATTCTCATTCTCTGGCTCAAAAACACCTTCACCACTCCAATGGCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- ..................................................
FD962266       --> GGATTCTCATTCTCTGGCTCAAAAACACCTTCACCACTCCAATGGCTTCT
EY906142       --> ...............GGCTCAAAAACACCTTCACCACTCCAATGGCTTCT
FD972347       --> ............gggGGCTCAAAAACACCTTCACCACTCCAATGGCTTCT
EX895071       --> ..................TCAAAAACACCTTCACCACTCCAATGGCTTCT
HS106976       --> .......................gcacgaggCACCACTCCAATGGCTTCT
FY451885       --> ..................................................
EY900059       --> ..................................................

               51     -    101
UN21110        --> TCACTTCCTCAATCACCCAAACCCATCTCTCCCTTCTTCAAAACGCCGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- ..................................................
FD962266       --> TCACTTCCTCAATCACCCAAACCCATCTCTCCCTTCTTCAAAACGCCGCC
EY906142       --> TCACTTCCTCAATCACCCAAACCCATCTCTCCCTTCTTCAAAACGCCGCC
FD972347       --> TCACTTCCTCAATCACCCAAACCCATCTCTCCCTTCCTCAAAACGCCGCC
EX895071       --> TCACTTCCCCAATCACCTAAACCCATCTCTCCCTTCTTCAAAACGCCGCC
HS106976       --> TCACTTCCCCAATCACCTAAACCCATCTCTCCCTTCTTCAAAACGCCGCC
FY451885       --> ....TTCCTCA-TCACCCAAACCCATCTCTCCCTTCTTCAAA-CGCCGGC
EY900059       --> ..................................................

               101    -    151
UN21110        --> GTTTCCAACCACCAAACCACTCGTCTTCCTCAACTTCCAAACCCGGCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- ..................................................
FD962266       --> GTTTCCAACCA---AACCACTCGTCTTCCTCAACTTCCAAACCCGGCTAG
EY906142       --> GTTTCCAACCACCAAACCACTCGTCTTCCTCAACTTCCAAACCCGGCTAG
FD972347       --> GTTTCCAACCACCAAACCACTCGTCTTCCTCAACTTCCAAACCCGGCTAG
EX895071       --> GTTTCCAACCACCAAACCACTCGTCTTCCTCAACTTCCAAACCCGGCTAG
HS106976       --> GTTTCCAACCACCAAACCACTCGTCTTCCTCAACTTCCAAACCCGGCTAG
FY451885       --> GTTTCCAACCACCAAACCGCTCGTCTTCCTCAACTTCCAAACCCGGCTAG
EY900059       --> ..................................................

               151    -    201
UN21110        --> CCTCGAAACCCTTGGATGTATCAGTCAATCTCAAGAAGAAGAAGAGCGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- ..................................................
FD962266       --> CCTCGAAACCCTTGGATGTATCAGTCAATCTCAAGAAGAAGAAGAGCGCG
EY906142       --> CCTCGAGACCCTTGGATGTATCAGTCAATCTCAAGAAGAAGAAGAGCGTG
FD972347       --> CCTCGAGACTCTTGGATGTATCAGTCAATCTCAAGAAGAAGAAGAGCGTG
EX895071       --> CCTCGAAACCCTTGGATGTATCAGTCAATCTCAAGAAGAAGAAGAGCGTG
HS106976       --> CCTCGAAACCCTTGGATGTATCAGTCAATCTCAAGAAGAAGAAGAGCGTG
FY451885       --> CCTCGAAACCCTTGGATGTATCAGTCAATCTCAAGAAGAAGAAGAGCGTG
EY900059       --> ............gGGATGTATCAGTCAATCTCAAGAAGAAGAAGAGCGTG

               201    -    251
UN21110        --> TGGCTCGACCCCTTTGACGACGGCGAAGACCTCAACAACGAATACGGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- ..................................................
FD962266       --> TGGCTCGACCCCTTTGACGACGGCGAAGACCTTAACAACGAATACGGGTC
EY906142       --> TGGCTCGACCCCTTTGACGACGGTGAAGACCTCAACAACGAATACGGGTC
FD972347       --> TGGCTCGACCCCTTTGACGACGGTGAAGACCTCAACAACGAATACGGGTC
EX895071       --> TGGCTTGACCCCTTTGACGACGGCGAAGACCTCAACAACGAATACGGGTC
HS106976       --> TGGCTTGACCCCTTTGACGACGGCGAAGACCTCAACAACGAATACGGGTC
FY451885       --> TGGCTCGACCCCTTTGACGACGGCGAAGACCTCAACAACGAATACGGGTC
EY900059       --> TGGCTCGACCCCTTTGACGACGGCGAAGACCTCAACAACGAATACGGGTC

               251    -    301
UN21110        --> ACTGTTCGCCGACGGAAAGCAAGAAGAGGATCCGAGACCACCGGATAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- ..................................................
FD962266       --> ACTGTTCGCTGACGGAAAGCAAGAAGAGGATCCGAGACCACCGGATAATC
EY906142       --> ACTGTTCGCCGATGGAAAGCAAGAAGAGGGTCCGAGACCACCGGATAATC
FD972347       --> ACTGTTCGCCGATGGAAAGCAAGAAGAGGATCCGAGACCACCGGATAATC
EX895071       --> ACTGTTCGCCGACGGAAAGCAAGAAGAGGATCCGAGACCACCGGATAATC
HS106976       --> ACTGTTCGCCGACGGAAAGCAAGAAGAGGATCCGAGACCACCGGATAATC
FY451885       --> ACTGTTCGCCGACGGAAAGCAAGAAGAGGATCCGAGACCACCGGATAATC
EY900059       --> ACTGTTCGCTGACGGAAAGCAAGA---GGATCCGAGACCACCGGATAATC

               301    -    351
UN21110        --> CTGACAATCCTTACGGGTTCTTGAAGTTCCCAATGGGTTACACCGTCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- ..................................................
FD962266       --> CTGACAATCCTTACGGGTTCTTGAAGTTCCCAATGGGTTACACCGTCGAG
EY906142       --> CTGATAATCCTTACGGGTTCTTGAAGTTTCCAATGGGCTACACCGTCGAG
FD972347       --> CTGATAATCCTTACGGGTTCTTGAAGTTTCCAATGGGTTACACCGTCGAG
EX895071       --> CTGACAATCCTTACGGGTTCTTGAAGTTCCCAATGGGTTACACCGTCGAG
HS106976       --> CTGACAATCCTTACGGGTTCTTGAAGTTCCCAATGGGTTACACCGTCGAG
FY451885       --> CTGACAATCCTTACGGGTTCTTGAAGTTCCCAATGGGTTACACCGTCGAG
EY900059       --> CTGACAATCCTTACGGGTTCTTGAAGTTCCCAATGGGTTACACCGTCGAG

               351    -    401
UN21110        --> CTCGCTTCTCTGCCGTTGAAAATCAGAGGAGATGTTCGACGGTGCTGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- ..................................................
FD962266       --> CTCGCTTCTCTGCCGTTGAAAATCAGAGGAGATGTTCGACGGTGCTGCTG
EY906142       --> CTCGCTTCTCTGCCGTTGAAAATCAGAGGAGATGTTCGACGGTGCTGTTG
FD972347       --> CTCGCTTCTCTGCCGTTGAAAATCAGAGGAGATGTTCGACGGTGCTGTTG
EX895071       --> CTCGCTTCTCTGCCGTTGAAAATCAGAGGAGATGTTCGACGGTGCTGCTG
HS106976       --> CTCGCTTCTCTGCCGTTGAAAATCAGAGGAGATGTTCGACGGTGCTGCTG
FY451885       --> CTCGCTTCTCTGCCGTTGAAAATCAGAGGAGATGTTCGACGGTGCTGCTG
EY900059       --> CTCGCTTCTCTGCCGTTGAAAATCAGAGGAGATGTTCGGCGGTGCTGCTG

               401    -    451
UN21110        --> CGTCGTCTCCGGTGGAGTGTACGAGAATCTACTCTTTTTCCCGACGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- ..................................................
FD962266       --> CGTCGTCTCCGGTGGAGTGTACGATAATCTACTCTTTTTCCCGACGATTC
EY906142       --> CGTCGTCTCCGGTGGAGTGTACGAGAATCTACTCTTTTTCCCGACGATTC
FD972347       --> CGTCGTCTCCGGTGGAGTGTACGAGAATCTACTCTTTTTCCCGACGATTC
EX895071       --> CGTCGTCTCCGGTGGAGTGTACGAGAATCTATTCTTTTTCCCGACGATTC
HS106976       --> CGTCGTCTCCGGTGGAGTGTACGAGAATCTACTCTTTTTCCCGACGATTC
FY451885       --> CGTCGTCTCCGGTGGAGTGTACGAGAATCTACTCTTTTTCCCGACGATTC
EY900059       --> CGTCGTCTCCGGTGGAGTGTACGATAATCTACTCTTTTTCCCGACGATTC

               451    -    501
UN21110        --> AGCTACTTAAAGACAGGTACCCTGGTGTTCAGGTAGATGTCTTAACGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD962266       --> AGCTACTTAAAGACAGGTACCCTGGTGTTCAGGTAGATGTCTTAACGACA  Raphanus raphanistrum subsp. maritimus
EY906142       --> AGTTACTTAAAGACAGGTATCCTGGTGTTCAGGTAGATGTCTTAACGACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972347       --> AGTTACTTAAAGACAGGTATCCTGGTGTTCAGGTAGATGTCTTAACGACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX895071       --> AGCTACTTAAAGACAGGTACCCTGGTGTTCAGGTAGATGTCTTA-CGACA  Raphanus sativus cv Early Scarlet Globe
HS106976       --> AGCTACTTAAAGACAGGTACCCTGGTGTTCAGGTAGATGTCTTAACGACA  Raphanus sativus var. niger
FY451885       --> AGCTACTTAAAGACAGGTATCCTGGTGTTCAGGTAGATGTCTTAACAACA  Raphanus sativus cv GSK3-1
EY900059       --> AGCTACTTAAAGACAGGTACCCTGGTGTTCAGGTAGATGTCTTAACGACA  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN21110        --> GAGAGAGGAAAACAAACGTACGAGTTAAACAAAAACGTGAGGTGGGCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD962266       --> GAGAGAGGAAAACAAACGTACGAGTTAAACAAAAACGTGAGGTGGGCAAA  Raphanus raphanistrum subsp. maritimus
EY906142       --> GATAGAGGAAAACAAACGTACGAGTTAAACAAAAACGTGAGATGGGCAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972347       --> GATAGAGGAAAACAAACGTACGAGTTAAACAAAAACGTGAGATGGGCAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX895071       --> GAGAGAGGAAAACAAACGTACGAGTTAAACAAAA-CGTGAGGTGGGCAAA  Raphanus sativus cv Early Scarlet Globe
HS106976       --> GAGAGAGGAAAACAAACGTACGAGTTAAACAAAAACGTGAGGTGGGCAAA  Raphanus sativus var. niger
FY451885       --> GAGAGAGGAAAACAAACGTACGAGTTAAACAAAAACGTGAGATGGGCAAA  Raphanus sativus cv GSK3-1
EY900059       --> GAGAGAGGAAAACAAACGTACGAGTTAAACAAAAACGTGAGGTGGGCAAA  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN21110        --> TGTGTACGATCCAGACGATCATTGGCCTGAGCCTGCTGAATATACAGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD962266       --> TGTGTACGATCCAGACGATCATTGGCCTGAGCCTGCTGAATGTACAGACA  Raphanus raphanistrum subsp. maritimus
EY906142       --> TGTGTACGATCCAGACGATCATTGGCCTGAACCTGCTGAATATACAGACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972347       --> TGTGTACGATCCAGACGATCATTGGCCTGAACCTGCTGAATATACAGACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX895071       --> TGTGTACGATCCAGACGATCATTGGCCTGAGCCTGCTGA-TATACAGACA  Raphanus sativus cv Early Scarlet Globe
HS106976       --> TGTGTACGATCCAGACGATCATTGGCCTGAGCCTGCTGAATATACAGACA  Raphanus sativus var. niger
FY451885       --> TGTGTATGATCCAGACGATCATTGGCCTGAACCTGCTGAATATACAGACA  Raphanus sativus cv GSK3-1
EY900059       --> TGTGTACGATCCAGACGATCATTGGCCTGAGCCTGCTGAATATACAGACA  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN21110        --> TGATCGGACTTCTCAAAGGAAGGTACTATGACATGATTCTGTCAACGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- ......................................CTGTCAACGAAG
FD962266       --> TGATCGGACTTCTCAAAGGAAGGTACTATGACATGATTCTGTCAACGAAG
EY906142       --> TGATCGGACTTCTCAAAGGAAGGTACTATGACATGATTCTGTCAACGAAG
FD972347       --> TGATCGGACTTCTCAAAGGAAGGTACTATGACATGATTCTGTCAACGAAG
EX895071       --> TGATCGGACTTCTC....................................
HS106976       --> TGATCGGACTTCTCAAAGGAAGGTACTATGACATGATTCTGTCAACGAAG
FY451885       --> TGATTGGACTTCTCAAAGGAAGGTACTATGACATGATTCTGTCAACGAAG
EY900059       --> TGATCGGACTTCTCAAAGGAAGGTACTATGACATGATTCTGTCAACGAAG

               651    -    701
UN21110        --> CTCGCAGGGCTAGGCCACGCAGCGTTCTTGTTCATGACAACGGCTAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- CTCGCAGGGCTAGGCCACGCAGCGTTCTTGTTCATGACAACGGCTAGAGA
FD962266       --> CTCG..............................................
EY906142       --> CTCGTAGGGCTAGGCCACGCAGCGTTCTTGTTCATGACAACGGCTAGAGA
FD972347       --> CTC...............................................
EX895071       --> ..................................................
HS106976       --> CTCGCAGGGCTAGGCCACGCAGCGTTCTTGTTCATGACAACGGCTAGAGA
FY451885       --> CTCGCAGGGCTAGGCCACGCAGCGTTCTTGTTCATGACAACGGCTAGAGA
EY900059       --> CTCG..............................................

               701    -    751
UN21110        --> CAGAGTTAGTTACATTTACCCGAATGTTAACTCTGCTGGAGCTGGTCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- CAGAGTTAGTTACATTTACCCGAATGTTAACTCTGCTGGAGCTGGTCTGA
FD962266       --> ..................................................
EY906142       --> CAGAGTTAGTTACATTTACCCCAATGTTAACTCTGCTGGAGC-CGTCTGA
FD972347       --> ..................................................
EX895071       --> ..................................................
HS106976       --> CAGAGTTAGTTACATTTACCCGAATGTTAACTCGGCTGGAGCTGGTCTGA
FY451885       --> CAGAGTTAGTTACATTTACCCGAATGTTAACTCTGCCGGAGCTGGTCTGA
EY900059       --> ..................................................

               751    -    801
UN21110        --> TGCTATCTGAAACCTTTACAGCAGAAAACACCAACCTGTCAGAATTAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- TGCTATCTGAAACCTTTACAGCAGAAAACACCAACCTTTCAGAATTAGGT
FD962266       --> ..................................................
EY906142       --> TGCTATCCGAAACCTTTACAGCAGAAAACACCAACCTGTCAGAA......
FD972347       --> ..................................................
EX895071       --> ..................................................
HS106976       --> TGCTATCTGAGACCTTTACAGCAGAAAACACCAACCTttc..........
FY451885       --> TGCTATCCGAAACCTTTACAGCAGAAAACACCAACCTGTCAGAATTAGGT
EY900059       --> ..................................................

               801    -    851
UN21110        --> TACAAAATGTATGACCAGATGGAGGATTGGTTAGGAAGGCCGTTTAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- TACAAAATGTATGACCAGATGGAGGATTGGTTAGGAAGGCCGTTTAGGAG
FD962266       --> ..................................................
EY906142       --> ..................................................
FD972347       --> ..................................................
EX895071       --> ..................................................
HS106976       --> ..................................................
FY451885       --> TACAAAATGTATGACCAGATGGAGGATTGGTTAGGAAGGCCGTTTAGGAG
EY900059       --> ..................................................

               851    -    901
UN21110        --> TGTTCCAAGGACTCCTGTGCTGCCACTTAGGGTGTCGGTTTCACGGAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- TGTTCCAAGGACTCCTGTGCTGCCACTTAGGGTGTCGGTTTCACGGAGAT
FD962266       --> ..................................................
EY906142       --> ..................................................
FD972347       --> ..................................................
EX895071       --> ..................................................
HS106976       --> ..................................................
FY451885       --> TGTTCCAAGGACTCCTGTGCTGCCACTTAGGGTGTCGGTTT.........
EY900059       --> ..................................................

               901    -    951
UN21110        --> TGAAAGAGGTCGTGGCTGACAAGTATAGGAAAGCTGGAGTGGAGACAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- TGAAAGAGGTCGTGGCTGACAAGTATAGGAAAGCTGGAGTGGAGACAGGG
FD962266       --> ..................................................
EY906142       --> ..................................................
FD972347       --> ..................................................
EX895071       --> ..................................................
HS106976       --> ..................................................
FY451885       --> ..................................................
EY900059       --> ..................................................

               951    -   1001
UN21110        --> AAGTTTATAGTGATTCATGGGATCGAATCAGATTCAAAGGCATCAATGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- AAGTTTATAGTGATTCATGGGATCGAATCAGATTCAAAGGCATCAATGCT
FD962266       --> ..................................................
EY906142       --> ..................................................
FD972347       --> ..................................................
EX895071       --> ..................................................
HS106976       --> ..................................................
FY451885       --> ..................................................
EY900059       --> ..................................................

               1001   -   1051
UN21110        --> ATCAAAAGGAGATAGTGATAGTTTGCTTCCACATGAGAAAGAGAGGGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- ATCAAAAGGAGATAGTGATAGTTTGCTTCCACATGAGAAAGAGAGGGAAA
FD962266       --> ..................................................
EY906142       --> ..................................................
FD972347       --> ..................................................
EX895071       --> ..................................................
HS106976       --> ..................................................
FY451885       --> ..................................................
EY900059       --> ..................................................

               1051   -   1101
UN21110        --> ACGTCTAAGAATTTGTGGGTGATGATACATCTATAGTATTCATCACAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- ACGTCTAAGAATTTGTGGGTGATGATACATCTATAGTATTCATCACAACA
FD962266       --> ..................................................
EY906142       --> ..................................................
FD972347       --> ..................................................
EX895071       --> ..................................................
HS106976       --> ..................................................
FY451885       --> ..................................................
EY900059       --> ..................................................

               1101   -   1151
UN21110        --> CCAGGACAGTTGGCTGCTCTGATAAACGATTCTGCTGGAGTTATCGCTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- CCAGGACAGTTGGCTGCTCTGATAAACGATTCTGCTGGAGTTATCGCTAC
FD962266       --> ..................................................
EY906142       --> ..................................................
FD972347       --> ..................................................
EX895071       --> ..................................................
HS106976       --> ..................................................
FY451885       --> ..................................................
EY900059       --> ..................................................

               1151   -   1201
UN21110        --> AAACACAGCTGCTATTCAACTAGCTAATGCTCGAGACAAACCCAGTATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- AAACACAGCTGCTATTCAACTAGCTAATGCTCGAGACAAACCCAGTATTG
FD962266       --> ..................................................
EY906142       --> ..................................................
FD972347       --> ..................................................
EX895071       --> ..................................................
HS106976       --> ..................................................
FY451885       --> ..................................................
EY900059       --> ..................................................

               1201   -   1251
UN21110        --> GGTTGTTCTCTTCAGAAGAGAAAGCGAAGCTATTTGTACCAGACGCAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- GGTTGTTCTCTTCAGAAGAGAAAGCGAAGCTATTTGTACCAGACGCAGAA
FD962266       --> ..................................................
EY906142       --> ..................................................
FD972347       --> ..................................................
EX895071       --> ..................................................
HS106976       --> ..................................................
FY451885       --> ..................................................
EY900059       --> ..................................................

               1251   -   1301
UN21110        --> GAGAGGAGTAACTGTGTCATTGTTGCTTCAAAGACTGGAAGTCTAGCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- GAGAGGAGTAACTGTGTCATTGTTGCTTCAAAGACTGGAAGTCTAGCAGA
FD962266       --> ..................................................
EY906142       --> ..................................................
FD972347       --> ..................................................
EX895071       --> ..................................................
HS106976       --> ..................................................
FY451885       --> ..................................................
EY900059       --> ..................................................

               1301   -   1351
UN21110        --> TATCGACGTAGGAGCTGTTAAAAATGCAATGCAGGTCTTTGAAGGATCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- TATCGACGTAGGAGCTGTTAAAAATGCAATGCAGGTCTTTGAAGGATCAT
FD962266       --> ..................................................
EY906142       --> ..................................................
FD972347       --> ..................................................
EX895071       --> ..................................................
HS106976       --> ..................................................
FY451885       --> ..................................................
EY900059       --> ..................................................

               1351   -   1401
UN21110        --> TGGCTCTCGTGTAGATAATCTTAAAAAGTTTGTGAAACAAGTTACATTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958853       <-- TGGCTCTCGTGTAGATAATCTTAAAAAGTTTGTGAAACAAGTTACATTCA
FD962266       --> ..................................................
EY906142       --> ..................................................
FD972347       --> ..................................................
EX895071       --> ..................................................
HS106976       --> ..................................................
FY451885       --> ..................................................
EY900059       --> ..................................................

               1401   -   1451
UN21110        --> TATATATATATATA
                   ~~~~~~~~~~~~~~
FD958853       <-- TATATATATATATA
FD962266       --> ..............
EY906142       --> ..............
FD972347       --> ..............
EX895071       --> ..............
HS106976       --> ..............
FY451885       --> ..............
EY900059       --> ..............