1      -     51
UN21218        --> GAATAAGTAACTAATCTCTTTTATTATAGAAAAGCTTGAAGATTACATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- ..................................................
EX895483       <-- ..................................................
FD572566       <-- ..................................................
FD978978       <-- ..................................................
EX895166       <-- ..................................................
EW724424       <-- ..................................................
EW725423       <-- ..................................................
FD569113       <-- ..................................................
FD573375       --> GAATAAGTAACTAATCTCTTTTATTATAGAAGAGCTTGAAGATTACATAG
EW728289       --> aAATAAGTAACTAATCTCTTTTATTATAGAAAAGCTTGAAGATTACATAG
FD576188       --> .....AGTAACTAATCTCTTTTATTATAGAAAAGCTTGAAAATTACATAG
FY443881       --> ...................................agaagagcttgaaga
FD967558       --> ..................................................
FD975122       --> ..................................................
EW729976       --> ..................................................

               51     -    101
UN21218        --> TTTATGTCTTTATGATTCAAGAAATCTCTCTCAAGAACACACACACATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- ..............ATTCAAGAAATATCTCTCAAGAACACACACACATAT  Raphanus sativus cv GSK3-1
EX895483       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD572566       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD978978       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895166       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW724424       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW725423       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD569113       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD573375       --> TTTATGTCTTTATGATTCAAGAAATCTCTCTCAAGAACACACACACATAT  Raphanus sativus cv Early Scarlet Globe
EW728289       --> TTTATGTCTTTATGATTCAAGAAATCTCTCTCAAGAACACACACACATAT  Raphanus sativus cv Early Scarlet Globe
FD576188       --> TTTATGTCTTCATGATTCAAGAAATCTCTCTCAAGAACACACACACATAT  Raphanus sativus cv Early Scarlet Globe
FY443881       --> ttataaagTTTATGATTCAAGAAATATCTCTCAAGAACACACACACATAT  Raphanus sativus cv GSK3-1
FD967558       --> ..............ATTCAAGAAATCTCTCTCAAGAACACACACACATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975122       --> ..............ATTCAAGAAATATCTCTCAAGAACACACACACATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729976       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               101    -    151
UN21218        --> AAGTTATAATTGAGAA-TGAAAACAGAGAAAAAA--CAGAGTACTTAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- AAGTTATAATTGAGAAAAAAAAACAGAGAAAAAA--CAGAGTACTTAAAA  Raphanus sativus cv GSK3-1
EX895483       <-- .............tgagatgAAACAGAGAAAAA---CAGAGTACTTAAA-  Raphanus sativus cv Early Scarlet Globe
FD572566       <-- ...................gAAACAGAGAAAAA---CAGAGTACTTAAA-  Raphanus sativus cv Early Scarlet Globe
FD978978       <-- ......................ACAGAGAAAAAA-ACAGAGTACTTAAA-  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895166       <-- ......................................GAGTACTTAAA-  Raphanus sativus cv Early Scarlet Globe
EW724424       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW725423       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD569113       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD573375       --> AAGTTATAATTGAGAA-TGAAAACAGAGAAAAAA--CAGAGTACTTAAAA  Raphanus sativus cv Early Scarlet Globe
EW728289       --> AAGTTATAATTGAGAA-TGAAAACAGAGAAAAAA--CAGAGTACTTAAAA  Raphanus sativus cv Early Scarlet Globe
FD576188       --> AAGTTATAATTGAGAA-TGAAAACAGAAAAAAAA--CAGAGTACTTAAAA  Raphanus sativus cv Early Scarlet Globe
FY443881       --> AAGTTATAATTGAGAAAAAAAAACAGAGAAAAAA--CAGAGTACTTAAAA  Raphanus sativus cv GSK3-1
FD967558       --> AAGTTATAATTGAGAA-TGAAAACAGAGAAAAAA--CAGAGTACTTAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975122       --> AAGTTATAATTGAGAA-AAAAAACAGAGAAAAAAAACAGAGTACTTAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729976       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               151    -    201
UN21218        --> TTGGGAATGAGTCAGTCACTTATTT-ACTCTGAGCATTATTACTGTGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- TTGGGAATGAGTCAGTCGCTTATTTTACTCTGAGCATTATTACTGTGACT  Raphanus sativus cv GSK3-1
EX895483       <-- TTGGGA-TGAGTCAGTCACT-A-TT-ACTCTGAGCATTAT-ACTGTGACT  Raphanus sativus cv Early Scarlet Globe
FD572566       <-- TTGGGAATGAGTCAGTCACTTATTT-ACTCTGAGCATTATTACTGTGACT  Raphanus sativus cv Early Scarlet Globe
FD978978       <-- TTGGGAATGAGTCAGTCACTTATTTTACTCTGAGCATTATTACTGTGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895166       <-- TTGGGAATGAGTCAGTCACTTATTT-ACTCTGAGCATTATTACTGTGACT  Raphanus sativus cv Early Scarlet Globe
EW724424       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW725423       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD569113       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD573375       --> TTGGGAATGAGTCAGTCACTTATTT-ACTCTGAGCATTATTACTGTGACT  Raphanus sativus cv Early Scarlet Globe
EW728289       --> TTGGGAATGAGTCAGTCACTTATTT-ACTCTGAGCATTATTACTGTGACT  Raphanus sativus cv Early Scarlet Globe
FD576188       --> TTGGGAATGAGTCAGTCACTTATTT-ACTCTGAGCATTATTACTGTGACT  Raphanus sativus cv Early Scarlet Globe
FY443881       --> TTGGGAATGAGTCAGTCGCTTATTTTACTCTGAGCATTATTACTGTGACT  Raphanus sativus cv GSK3-1
FD967558       --> TTGGGAATGAGTCAGTCACTTATTT-ACTCTGAGCATTATTACTGTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975122       --> TTGGGAATGAGTCAGTCACTTATTTTACTCTGAGCATTATTACTGTGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729976       --> ...................TTATTT-ACTCTGAGCATTATTACTGTGACT  Raphanus sativus cv Early Scarlet Globe

               201    -    251
UN21218        --> GAAGCAGAAACTTTTCAGAAACTTATCACTGAAGGATCTTCTGGGAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- GAAGCAGAAACTTTT-AGAAACTTATCACTGAAGGATCTTCTGGGAAGCT  Raphanus sativus cv GSK3-1
EX895483       <-- GAAGCAG--AC-TTTCAGAAACTTATCACTGAAGGATCT-CTGGGAAGCT  Raphanus sativus cv Early Scarlet Globe
FD572566       <-- GAAGCAGAA-CTTTTCAGAAACTTATCACTGAAGGATCTTCTGGGAAGCT  Raphanus sativus cv Early Scarlet Globe
FD978978       <-- GAAGCAGAA-CTTTT-AGAAACTTATCACTGAAGGATCTTCTGGGAAGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895166       <-- GAAGCAGAA-CTTTTCAGAAACTTATCACTGAAGGATCT-CTGGGAAGCT  Raphanus sativus cv Early Scarlet Globe
EW724424       <-- .............................................AAGCT  Raphanus sativus cv Early Scarlet Globe
EW725423       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD569113       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD573375       --> GAAGCA-AAACTTTTCAAAAACTTATCACTGAAGGATCTTCTGGGAAGCT  Raphanus sativus cv Early Scarlet Globe
EW728289       --> GAAGCA-AAACTTTTCAAAAACTTATCACTGAAGGATCTTCTGGGAAGCT  Raphanus sativus cv Early Scarlet Globe
FD576188       --> GAAGCA-AAACTTTTCAAAAACTTATCACTGAAGGATCTTCTGGGAAGCT  Raphanus sativus cv Early Scarlet Globe
FY443881       --> GAAGCAGAAACTTTT-AGAAACTTATCACTGAAGGATCTTCTGGGAAGCT  Raphanus sativus cv GSK3-1
FD967558       --> GAAGCA-AAACTTTTTAGCAACTTATCACTGAAGGATCTTCTGGGAAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975122       --> GAAGCAGAA-CTTTTTAGAAACTTATCACTGAAGGATCTTCTGGGAAGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729976       --> GAAGCA-AAACTTTTCAAAAACTTATCACTGAAGGATTTTCTGGGAAGCT  Raphanus sativus cv Early Scarlet Globe

               251    -    301
UN21218        --> GGCCTCTTGGTGATCTCTGCCACCCACTCGTTGACACGTGGACGCTCGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- GGCCTCTTGGTGATCTCTGCCACCCACTCGTTGACACGTGGACGCTCGGT
EX895483       <-- GGCCTCTTGGTGATCTCTGCCACCCACTCGTTGACACGTGGACGCTCGGT
FD572566       <-- GGCCTCTTGGTGATCTCTGCCACCCACTCGTTGACACGTGGACGCTCGGT
FD978978       <-- GGCCTCTTGGTGATCTCTGCCACCCACTCGTTGACACGTGGACGTTCGGT
EX895166       <-- GGC-TCTTGGTGATCTCTGCCACCCACTCGTTGACACGTGGACGCTCGGT
EW724424       <-- GGCCTCTTGGTGATCTCTGCCACCCACTCGTTGACACGTGGACGCTCGGT
EW725423       <-- ..........TGATCTCTGCCACCCACTCGTTGACACGTGGACGCTCGGT
FD569113       <-- ..................................................
FD573375       --> GGCCTCTTGGTGATCTCTGCCACCCACTCGTTGACACGTGGACGCTCGGT
EW728289       --> GGCCTCTTGGTGATCTCTGCCACCCACTCGTTGACACGTGGACGCTCGGT
FD576188       --> GGCCTCTTGGTGATCTCTGCCACCCACTCGTTGACACGTGGACGCTCGGT
FY443881       --> GGCCTCTTGGTGATCTCTGCCACCCACTCGTTGACACGTGGACGCTCGGT
FD967558       --> GGCCTCTTGGTGATCTCTGCCACCCACTCGTTGACACGTGGACGTTCGGT
FD975122       --> GGCCTCTTGGTGATCTCTGCCACCCACTCGTTGACACGTGGACGTTCGGT
EW729976       --> GGCCTCTTGGTGATCTCTGCCACCCACTCGTTGACACGTGGACGCTCGGT

               301    -    351
UN21218        --> GAAGAGCTTCTTGGTGGGAGTTCCAAGCAAGTATTTAATCGTAGGAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- GAAGAGCTTCTTGGTGGGAGTTCCAAGCAAGTATTTAATCGTAGGAATGT  Raphanus sativus cv GSK3-1
EX895483       <-- GAAGAGCTTCTTGGTGGGAGTTCCAAGCAAGTATTTAATCGTAGGAATGT  Raphanus sativus cv Early Scarlet Globe
FD572566       <-- GAAGAGCTTCTTGGTGGGAGTTCCAAGCAAGCATTTAATCGTAGGAATGT  Raphanus sativus cv Early Scarlet Globe
FD978978       <-- GAAAAGCTTCTTGGTGGGAGTTCCAAGCAAGTATTTAATCGTAGGAATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895166       <-- GAAGAGCTTCTTGGTGGGAGTTCCAAGCAAGTATTTAATCGTAGGAATGT  Raphanus sativus cv Early Scarlet Globe
EW724424       <-- GAAGAGCTTCTTGGTGGGAGTTCCAAGCAAGTATTTAATCGTAGGAATGT  Raphanus sativus cv Early Scarlet Globe
EW725423       <-- GAAGAGCTTCTTGGTGGGAGTTCCAAGCAAGTATTTAATCGTAGGAATGT  Raphanus sativus cv Early Scarlet Globe
FD569113       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD573375       --> GAAGAGCTTCTTGGTGGGAGTTCCAAGCAAGTATTTAATCGTAGGAATGT  Raphanus sativus cv Early Scarlet Globe
EW728289       --> GAAAAGCTTCTTGGTGGGAGTTCCAAGCAAGTATTTAATCGTAGGAATGT  Raphanus sativus cv Early Scarlet Globe
FD576188       --> GAAAAGCTTCTTGGTGGGAGTTCCAAGCAAGCATTTAATCGTAGGAATGT  Raphanus sativus cv Early Scarlet Globe
FY443881       --> GAAGAGCTTCTTGGTGGGAGTTCCAAGCAAGTATTTAATCGTAGGAATGT  Raphanus sativus cv GSK3-1
FD967558       --> GAAAAGCTTCTTGGTGGGAGTTCCAAGCAAGTATTTAATCGTAGGAATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975122       --> GAAAAGCTTCTTGGTGGGAGTTCCAAGCAAGTATTTAATCGTAGGAATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729976       --> GAAAAGCTTCTTGGGGGGAGTTCCAAGCAAGTATTTAATCGTAGGAATGT  Raphanus sativus cv Early Scarlet Globe

               351    -    401
UN21218        --> GGTGAAGATCGGTCAAAGTAAAAGTGTCACCAGCCAAGTACTTGAACTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- GGTGAAGATCGGTCAAAGTAAAAGTGTCACCAGCCAAGTACTTGAACTCC
EX895483       <-- GGTGAAGATCGGTCAAAGTAAAAGTATCACCAGCCAAGTACTTGAACTCC
FD572566       <-- GGTGAAGATCGGTCAAAGTAAAAGTGTCACCAGCCAAGTACTTGAACTCC
FD978978       <-- GGTGAAGATCGGTCAGAGTAAAAGTGTCACCAGCCAAGTACTTGAACTCC
EX895166       <-- GGTGAAGATCGGTCAAAGTAAAAGTATCACCAGCCAAGTACTTGAACTCC
EW724424       <-- GGTGAAGATCGGTCAAAGTAAAAGTGTCACCAGCCAAGTACTTGAACTCC
EW725423       <-- GGTGAAGATCGGTCAAAGTAAAAGTGTCACCAGCCAAGTACTTGAACTCC
FD569113       <-- ..................................................
FD573375       --> GGTGAAGATCGGTCAAAGTAAAAGTATCACCAGCCAAGTACTTGAACTCC
EW728289       --> GGTGAAAATCGGTCAAAGTAAAAGTGTCACCAGCCAAGTACTTGAACTCC
FD576188       --> GGTGAAAATCGGTCAAAGTAAAAGTGTCACCAGCCAAGTACTTGAACTCC
FY443881       --> GGTGAAGATCGGTCAAAGTAAAAGTGTCACCAGCCAAGTACTTGAACTCC
FD967558       --> GGTGAAAATCGGTCAAAGTAAAAGTGTCACCAGCCAAGTACTTGAACTCC
FD975122       --> GGTGAAGATCGGTCAGAGTAAAAGTGTCACCAGCCAAGTACTTGAACTCC
EW729976       --> GGTGAAAATCGGTCAAAGTAAAAGTGTCACCAGCCAAGTACTTGAACTCC

               401    -    451
UN21218        --> TTGAGCCGAGCCTCGTACACATCAAGGACCTTGGCTAACTTAGCCTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- TTGAGCCTAGCCTCGTACACATCAAGGACCTTGGCTAACTTAGCCTCCTC  Raphanus sativus cv GSK3-1
EX895483       <-- TTGAGCCTAGCCTCGTACACATCAAGGACCTTGGCTAACTTAGCCTCCTC  Raphanus sativus cv Early Scarlet Globe
FD572566       <-- TTGAGCCGAGCCTCGTAGACATCAAGGACCTTGGCTAACTTAGCCTCCTC  Raphanus sativus cv Early Scarlet Globe
FD978978       <-- TTGAGCCGAGCCTCGTACACATCAAGGACCTTGGCTAACTTAGCCTCCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895166       <-- TTGAGCCTAGCCTCGTACACATCAAGGACCTTGGCTAACTTAGCCTCCTC  Raphanus sativus cv Early Scarlet Globe
EW724424       <-- TTGAGCCGAGCCTCGTAGACATCAAGGACCTTGGCTAACTTAGCCTCCTC  Raphanus sativus cv Early Scarlet Globe
EW725423       <-- TTGAACCGAGCCTCGTAGACATCAAGGACCTTGGCTAACTTAGCCTCCTC  Raphanus sativus cv Early Scarlet Globe
FD569113       <-- ..........................................GCCTCCTC  Raphanus sativus cv Early Scarlet Globe
FD573375       --> TTGAGCCTAGCCTCGTACACATCAAGGGCCTTGGCTAACTTAGCCTCCTC  Raphanus sativus cv Early Scarlet Globe
EW728289       --> TTGAGCCGAGCCTCGTAAACATCAAGGACCTTGGCTAACTTAGCCTCCTC  Raphanus sativus cv Early Scarlet Globe
FD576188       --> TTGAGCCGAGCCTCGTAAACATCAAGGACCTTGGCTAACTTAGCCTCCTC  Raphanus sativus cv Early Scarlet Globe
FY443881       --> TTGAGCCTAGCCTCGTACACATCAAGGACCTTGGCTAACTTAGCCTCCTC  Raphanus sativus cv GSK3-1
FD967558       --> TTGAGCCTAGCCTCGTACACATCAAGGACCTTGGCTAACTTAGCCTCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975122       --> TTGAGCCGAGCCTCGTACACATCAAGGACCTTGGCTAACTTAGCCTCCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729976       --> TTGAACCGAGCCTCGTAAACATCAAGGACCTTGGCTAACTTACCCTCCTC  Raphanus sativus cv Early Scarlet Globe

               451    -    501
UN21218        --> TTCGGCAACAACGGCTTGGTCTGTGGTCAAGCCTTTCTTGAGCTTAAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- TTCGGCAACAACGGCTTGGTCTGTGGTCAAGCCTTTCTTGAGCTTAAATA
EX895483       <-- TTCGGCAACAACGGCTTGGTCTGTGGTCAAGCCTTTCTTGAGCTTAAATA
FD572566       <-- TTCGGCAACAACGGCTTGGTCTGTGGTCAAGCCTTTCTTGAGCTTAAATA
FD978978       <-- TTCGGCAACAACGGCTTGGTCTGTGGTCAAGCCTTTCTTGAGCTTAAATA
EX895166       <-- TTCGGCAACAACGGCTTGGTCTGTGGTCAAGCCTTTCTTGAGCTTAAATA
EW724424       <-- TTCGGCAACAACGGCTTGGTCTGTGGTCAAGCCTTTCTTGAGCTTAAATA
EW725423       <-- TTCGGCAACAACGGCTTGGTCTGTGGTCAAGCCTTTCTTGAGCTTAAATA
FD569113       <-- TTCGGCAACAACGGCTTGGTCTGTGGTCAAGCCTTTCTTGAGCTTAAATA
FD573375       --> TTCGGCAACAACGGCTTGGTCTGTGGTCAAGCCTTTCTTGAGCTTAAATA
EW728289       --> TTCGGCAACAACGGCTTGGTCTGTGGTCAAGCCTTTCTTGAGCTTAAATA
FD576188       --> TTCGGCAACAACGGCTTGGTCTGTGGTCAAGCCTTTCTTGAGCTTAAATA
FY443881       --> TTCGGCAACAACGGCTTGGTCTGTGGTCAAGCCTTTCTTGAGCTTAAATA
FD967558       --> TTCGGCAACAACGGCTTGGTCTGTGGTCGAGCCTTTCTTGATCTTAAATA
FD975122       --> TTCGGCAACAACGGCTTGGTCTGTGGTCAAGCCTTTCTTGAGCTTAAATA
EW729976       --> TTCGGCAACAACGGCTTGGTCTGTGGTCAAGCCTTTCTTGAGCTTAAATA

               501    -    551
UN21218        --> CTTGTTCAGAAACAAGCTTTGCAGCCACTGGCTCGAACTGGTGAGCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- CTTGTTCAGAAACAAGCTTTGCAGCCACTGGCTCGAACTGGTGAGCTTCT
EX895483       <-- CTTGTTCAGAAACAAGCTTTGAAGCCACTGGCTCGAACTGGTGAGCTTCT
FD572566       <-- CTTGTTCAGAAACAAGCTTTGCAGCCACTGGCTCGAACTGGTGAGCTTCT
FD978978       <-- CTTGTTCAGAAACAAGCTTTGCAGCCACTGGCTCGAACTGGTGAGCTTCT
EX895166       <-- CTTGTTCAGAAACAAGCTTTGAAGCCACTGGCTCGAACTGGTGAGCTTCT
EW724424       <-- CTTGTTCAGAAACAAGCTTTGCAGCCACTGGCTCGAACTGGCGAGCTTCT
EW725423       <-- CTTGTTCAGAAACAAGCTTTGCAGCCACTGGCTCGAACTGGTGAGCTTCT
FD569113       <-- CTTGTTCAGAAACAAGCTTTGAAGCCACTGGCTCGAACTGGTGAGCTTCT
FD573375       --> CTTGTTCAGAAACAAGCTTTGAAGCCACTGGCTCGAACTGGTGAGCTTCT
EW728289       --> CTTGTTCAGAAACAAGCTTTGCAGCCACTGGCTCGAACTGGCGAGCTTCT
FD576188       --> CTTGTTCAAAAACAAGCTTTGCAGCCACTGGCTCGAACTGGTGAGCTTCT
FY443881       --> CTTGTTCAGAAACAAGCTTTGCAGCCACTGGCTCGAACTGGTGAGCTTCT
FD967558       --> CTTGTTCAAAAACAAGCTTTGAAGCCACTGGCTCGAACTGGTGAGCTTCT
FD975122       --> CTTGTTCAGAAACAAGCTTTGCAGCCACTGGCTCGAACTGGTGAGCTTCT
EW729976       --> CTTGTTCAAAAACAAGCTTTGCAGCCACTGGCTCGAACTGGTGAGCTTCT

               551    -    601
UN21218        --> ACCTGCATTCCAATGGCCATGATTGCATAGTGGGCTATGTTTTTGGAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- ACCTGCATTCCAATGGCCATGATTGCATAGTGGGCTATGTTTTTGGAGTC  Raphanus sativus cv GSK3-1
EX895483       <-- ACCTGCATTCCAATGGCCATGATTGCATAGTGGGCTATGTTCTTGGAGTC  Raphanus sativus cv Early Scarlet Globe
FD572566       <-- ACCTGCATTCCAATGGCCATGATTGCATAGTGGGCTATGTTTTTGGAGTC  Raphanus sativus cv Early Scarlet Globe
FD978978       <-- ACCTGCATTCCAATGGCCATGATTGCATAGTGGGCTATGTTCTTGGAGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895166       <-- ACCTGCATTCCAATGGCCATGATTGCATAGTGGGCTATGTTCTTGGAGTC  Raphanus sativus cv Early Scarlet Globe
EW724424       <-- ACCTGCATTCCAATGGCCATGATTGCATAGTGGGCTATGTTTTTGGAGTC  Raphanus sativus cv Early Scarlet Globe
EW725423       <-- ACCTGCATTCCAATGGCCATGATTGCATAGTGGGCTATGTTTTTGGAGTC  Raphanus sativus cv Early Scarlet Globe
FD569113       <-- ACCTGCATTCCAATGGCCATGATTGCATAGTGGGCTATGTTCTTGGAGTC  Raphanus sativus cv Early Scarlet Globe
FD573375       --> ACCTGCATTCCAATGGCCATGATTGCATAGTGGGCTATGTTCTTGGAGTC  Raphanus sativus cv Early Scarlet Globe
EW728289       --> ACCTGCATTCCAATGGCCATGATTGCATAGTGGGCTATGTTTTTGGAGTC  Raphanus sativus cv Early Scarlet Globe
FD576188       --> ACCTGCATTCCAATGGCCATGATTGCATAGTGGGCTATGTTTTTGGAGTC  Raphanus sativus cv Early Scarlet Globe
FY443881       --> ACCTGCATTCCAATGGCCATGATTGCATAGTGGGCTATGTTTTTGGAGTC  Raphanus sativus cv GSK3-1
FD967558       --> ACTTGCATTCCAATGGCCATGATTGCATAGTGGGCTATGTTCTTGGAGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975122       --> ACCTGCATTCCAATGGCCATGATTGCATAGTGGGCTATGTTCTTGGAGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729976       --> ACCTGCATTCCAATGGCCATGATTGCATAGTGGGCTATGTTTTTGGAGTC  Raphanus sativus cv Early Scarlet Globe

               601    -    651
UN21218        --> GGCCGGGAGAAGGTTGGTTCCTTGGCCTTCGTATCGGTGAGCTATGTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- GGCCGGGAGAAGGTTGGTTCCTTGGCCTTCGTATCGGTGAGCTATGTATT  Raphanus sativus cv GSK3-1
EX895483       <-- AGCTGGGAGAAGGTTGGTTCCTTGGCCTTCGTATCGGTGAGCTATGTATT  Raphanus sativus cv Early Scarlet Globe
FD572566       <-- GGCCGGGAGAAGGTTGGTTCCTTGGCCTTCGTATCGGTGAGCTATGTATT  Raphanus sativus cv Early Scarlet Globe
FD978978       <-- AGCTGGGAGAAGGTTGGTTCCTTGGCCTTCGTATCGGTGAGCTATGTATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895166       <-- AGCTGGGAGAAGGTTGGTTCCTTGGCCTTCGTATCGGTGAGCTATGTATT  Raphanus sativus cv Early Scarlet Globe
EW724424       <-- GGCCGGGAGAAGGTTGGTTCCTTGGCCTTCGTATCGGTGAGCTATGTATT  Raphanus sativus cv Early Scarlet Globe
EW725423       <-- GGCCGGGAGAAGGTTGGTTCCTTGGCCTTCGTATCGGTGAGCTATGTATT  Raphanus sativus cv Early Scarlet Globe
FD569113       <-- AGCTGGGAGAAGGTTGGTTCCTTGGCCTTCGTATCGGTGAGCTATGTATT  Raphanus sativus cv Early Scarlet Globe
FD573375       --> AGCTGGGAGAAGGTTGGTTCCTTGGCCTTCGTATCGGTGAGCTATGTATT  Raphanus sativus cv Early Scarlet Globe
EW728289       --> GGCCGG............................................  Raphanus sativus cv Early Scarlet Globe
FD576188       --> GGCCGGGAGAAGGTTGGTTCCTTGGCCTTCGTATCGGTGAGCTATGTATT  Raphanus sativus cv Early Scarlet Globe
FY443881       --> GGCCGGGAGAAGGTTGGTTCCTTGGCCTTCGTATCGGTGAGCTATGTATT  Raphanus sativus cv GSK3-1
FD967558       --> AGCTGGGAGAAGGTTGGTTCCTTGGCCTTCGTATCGGTGAGCTATGTACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975122       --> AGCTGGGAGAA.......................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729976       --> GGCCGGGAAAAGG.....................................  Raphanus sativus cv Early Scarlet Globe

               651    -    701
UN21218        --> GAGTAATCGCTCTTGATTCGAAAAGCTTGAGGTCTCCATCTTCAAAGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- GAGTAATCGCTCTTGATTCGAAAAGCTTGAGGTCTCCATCTTCAAAGGCT
EX895483       <-- GAGTAATCGCTCTTGATTCAAAAAGCTTGAGGTCTCCATCTTCAAAGGCT
FD572566       <-- GAGTAATCGCTCTTGATTCGAAAAGCTTGAGGTCTCCATCTTCAAAGGCT
FD978978       <-- GAGTAATCGCTCTTGATTCAAAAAGCTTGAGGTCTCCATCTTCAAAGGCT
EX895166       <-- GAGTAATCGCTCTTGATTCAAAAAGCTTGAGGTCTCCATCTTCAAAGGCT
EW724424       <-- GAGTAATCGCTCTTGATTCGAAAAGCTTGAGGTCTCCATCTTCAAAGGCT
EW725423       <-- GAGTAATCGCTCTTGATTCGAAAAGCTTGAGGTCTCCATCTTCAAAGGCT
FD569113       <-- GAGTAATCGCTCTTGATTCAAAAAGCTTGAGGTCTCCATCTTCAAAGGCT
FD573375       --> GAGTAATCGCTCTTGATTCAAAAAGCTTGAGGTCTCCATCTTCAAAGGCT
EW728289       --> ..................................................
FD576188       --> GAGTAATCGCTCTTGATTCGAAAAGCTTGAGGTCTCCATCTTCAAAGGCT
FY443881       --> GAGTAATCGCTCTTGATTCGAAAAGCTTGA....................
FD967558       --> GAGTAATCGCTCTTGATTCAAAAAGCTTGAGGTCTCCGTCTTCAAAAGCT
FD975122       --> ..................................................
EW729976       --> ..................................................

               701    -    751
UN21218        --> GGAACTTGACCAAAAGGGTTGCGGGCTAGGAAAGCCTCTTTCTTGTGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- GGAACTTGACCAAAAGGGTTGCGGGCTAGAAAAGCCTCTTTCTTGTGCTC
EX895483       <-- GGAACTTGACCAAAAGGGTTGCGGGCTAGGAAAGCCTCTTTCTTGTGCTC
FD572566       <-- GGAACTTGACCAAAAGGGTTGCGGGCTAGGAAAGCCTCTTTCTTGTGCTC
FD978978       <-- GGAACTTGACCAAAAGGGTTGCGGGCTAGGAAAGCCTCTTTCTTGTGCTC
EX895166       <-- GGAACTTGACCAAAAGGGTTGCGGGCTAGGAAAGCCTCTTTCTTGTGCTC
EW724424       <-- GGAACTTGACCAAAAGGGTTGCGGGCTAGGAAAGCCTCTTTCTTGTGCTC
EW725423       <-- GGAACTTGACCAAAAGGGTTGCGGGCTAGGAAAGCCTCTTTCTTGTGCTC
FD569113       <-- GGAACTTGACCAAAAGGGTTGCGGGCTAGGAAAGCCTCTTTCTTGTGCTC
FD573375       --> GGAACTTGAC........................................
EW728289       --> ..................................................
FD576188       --> GGAACTT...........................................
FY443881       --> ..................................................
FD967558       --> GGAACTTGACCAAAAGGGTTGCGGGCTAGGAAAGCCTCTTTCTTGTGCTC
FD975122       --> ..................................................
EW729976       --> ..................................................

               751    -    801
UN21218        --> GCCTCCCATGAGGTCGACATGAACGAACTCAAAGTCGAGGTTTTTCTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- GCCTCCCATGAGGTCGACATGAACGAACTCAAAGTCGAGGTTTTTCTCGT
EX895483       <-- GCCTCCCATGAGGTCGACATGAACGAACTCAAAGTCGAGGTTTTTCTCGT
FD572566       <-- GCCTCCCATGAGGTCGACATGAACGAACTCAAAGTCGAGGTTTTTCTCGT
FD978978       <-- GCCTCCCATGAGGTCGACATGAACGAACTCAAAGTCGAGGTTTTTCTCGT
EX895166       <-- GCCTCCCATGAGGTCGACATGAACGAACTCAAAGTCGAGGTTTTTCTCGT
EW724424       <-- GCCTCCCATGAGGTCGACATGAACGAACTCAAAGTCGAGGTTTTTCTCGT
EW725423       <-- GCCTCCCATGAGGTCGACATGAACGAACTCAAAGTCGAGGTTTTTCTCGT
FD569113       <-- GCCTCCCATGAGGTCGACATGAACGAACTCAAAGTCGAGGTTTTTCTCGT
FD573375       --> ..................................................
EW728289       --> ..................................................
FD576188       --> ..................................................
FY443881       --> ..................................................
FD967558       --> GCCTCCCATGAGGTCGACATGAACGAACTCAAAGTCGAG...........
FD975122       --> ..................................................
EW729976       --> ..................................................

               801    -    851
UN21218        --> GGAGGGTGAGGAGGACTCTCATGGTGGGAGAGGAAGCAGGGTGTCCGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- GTAGGGTGAGGAGGACTCTCATGGTGGGAGCAGAAGCAGGGTGTCCGAAA
EX895483       <-- GGAGGGTGAGGAGGACTCTCATGGTGGGAGAGGAAGCAGGGTGTCCGAAA
FD572566       <-- GGAGGGTGAGGAGGACTCTCATGGTGGGAGAGGAAGCATGGTGTCCGAAA
FD978978       <-- GGAGGGTGAGGAGGACTCTCATGGTGGGAGCGGAAGCAGGGTGTCCGAAA
EX895166       <-- GGAGGGTGAGGAGGACTCTCATGGTGGGAGAGGAAGCAGGGTGTCCGAAA
EW724424       <-- GGAGGGTGAGGAGGACTCTCATGGTGGGAGAGGAAGCATGGTGTCCGAAA
EW725423       <-- GGAGGGTGAGGAGGACTCTCATGGTGGGAGAGGAAGCATGGTGTCCGAAA
FD569113       <-- GGAGGGTGAGGAGGACTCTCATGGTGGGAGAGGAAGCAGGGTGTCCGAAA
FD573375       --> ..................................................
EW728289       --> ..................................................
FD576188       --> ..................................................
FY443881       --> ..................................................
FD967558       --> ..................................................
FD975122       --> ..................................................
EW729976       --> ..................................................

               851    -    901
UN21218        --> ACTTTGATAGCTGCCATTGAGTTAATTGCAAAGAAGCTCGTTGAGAGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- ACTTTGATAGCTGCCATTGATTTAATTGCAAAGAAACTCGT-GAGAGA..
EX895483       <-- ACTTTGATAGCTGCCATTGAGTTAATTGCAAAGAAGCTCGTTGAGAGATG
FD572566       <-- ACTTTGATAGCTGCCATTGAGTTAATTGCAAAGAAGCTCGTTGAGAGATG
FD978978       <-- ACTTTGATAGCTGCCATTGATTTAATTGCAAAGAAACACGTTGAGAGATG
EX895166       <-- ACTTTGATAGCTGCCATTGAGTTAATTGCAAAGAAGCTCGTTGAGAGATG
EW724424       <-- ACTTTGATAGCTGCCATTGAGTTAATTGCAAAGAAGCTCGTTGAGAGATG
EW725423       <-- ACTTTGATAGCTGCCATTGAGTTAATTGCAAAGAAGCTCGTTGAGAGATG
FD569113       <-- ACTTTGATAGCTGCCATTGAGTTAATTGCAAAGAAGCTCGTTGAGAGATG
FD573375       --> ..................................................
EW728289       --> ..................................................
FD576188       --> ..................................................
FY443881       --> ..................................................
FD967558       --> ..................................................
FD975122       --> ..................................................
EW729976       --> ..................................................

               901    -    951
UN21218        --> TGATGTGTTTGATGTTGAAGGTGAAGGTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442180       <-- ...............................
EX895483       <-- TGATGTGTTTGATGTTGAAGGTGAAGGTCC.
FD572566       <-- TGATGTGTTTGATGTTGA.............
FD978978       <-- TGATGTGTTTGATGTTGAAGGTcc.......
EX895166       <-- TGATGTGTTTGATGTTGAAGGTGAAGGTCC.
EW724424       <-- TGATGTGTTTGATGTTGAAGGTGAAGGTCCC
EW725423       <-- TGATGTGTTTGATGTTGA.............
FD569113       <-- TGATGTGTTTGATGct...............
FD573375       --> ...............................
EW728289       --> ...............................
FD576188       --> ...............................
FY443881       --> ...............................
FD967558       --> ...............................
FD975122       --> ...............................
EW729976       --> ...............................