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Alignment for radish unigene UN21224

               1      -     51
UN21224        --> AATGTAAATGCGAAGGTTATAACTAAAAAAATCTCTTGAGAATTGCAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547918       <-- AATGTAAATGCGAATGTTATAACTAAAAAAATCTCTTGAGAATTGCAGGA
EX750521       <-- ..............GGTTATAACTAAAAAAATCTCTTGAGAATTGCAGGA
EX774075       <-- ...................aAACTAAAAAAATCTCTTGAGAATTGCAGGA
FD533820       <-- ....................AACTAAAAAAATCTCTTGAGAATTGCAGGA
EX749878       <-- ............................................GCAGGA
FD964591       <-- ..............................................AGGA
EX763331       <-- ..................................................
FD987704       <-- ..................................................
EV543700       --> AATGTAAATGCGAATGTTATAACTAAAAAAATCTCTTGAGAATTGCAGGA
EX753947       --> ..............GGTTATAACTAAAAAAATCTCTTGAGAATTGCAGGG
FD960551       --> ..............GGTTATAACTAAAAAAATCTCTTGAGAATTGCAGGA
EX777833       --> ...................aAACTAAAAAAATCTCTTGAGAATTGCAGGA
FD983700       --> ............ggttataaAACTAAAAAAATCTCTTGAGAATTGCAGGA
EX753463       --> ............................................GCAGGA
EX767427       --> ..................................................

               51     -    101
UN21224        --> ATGTCAAAAAGATAGCCATCGGGTACAAACTAAGAAAAAACAACATAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547918       <-- ATGTCAAAAAGATAGCCATCGGGTACAAACTAAGAAAAAACAACATAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750521       <-- ATGTCAAAAAGATAGCCATCGGGTACAAACTAAGAAAAAACAACATAGAG  Raphanus raphanistrum subsp. maritimus
EX774075       <-- ATGTCAAAAAGATAGCCATCGGGTACAAACTAAGAAAAAACAAGATAAAG  Raphanus raphanistrum subsp. landra
FD533820       <-- ATGTCAAAAAGATAGCCATCGGGTACAAACTAAGAAAAAACAACATAGAG  Raphanus raphanistrum subsp. maritimus
EX749878       <-- ATGTCAAAAAGATAGCCATCGGGTACAAACTAAGAAAAAACAACATAGAG  Raphanus raphanistrum subsp. maritimus
FD964591       <-- ATGTCAAAAAGATAGCCATCGGGTGCAAACTAAGAAAAAACAACATAGAG  Raphanus raphanistrum subsp. maritimus
EX763331       <-- ..GTCAAAAAGATAGCCATCGGGTACAAACTAAGAAAAAACAACATAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987704       <-- ..GTCAAAAAGATAGCCATCGGGTACAAACTAAGAAAAAACAAGATAAAG  Raphanus raphanistrum subsp. landra
EV543700       --> ATGTCAAAAAGATAGCCATCGGGTACAAACTAAGAAAAAACAACATAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753947       --> ATGTCAAAAAGATAGCCATCGGGTACAAACTAAGAAAAAACAACATAGAG  Raphanus raphanistrum subsp. maritimus
FD960551       --> ATGTCAAAAAGATAGCCATCGGGTGCAAACTAAGAAAAAACAACATAGAG  Raphanus raphanistrum subsp. maritimus
EX777833       --> ATGTCAAAAAGATAGCCATCGGGTACAAACTAAGAAAAAACAAGATAAAG  Raphanus raphanistrum subsp. landra
FD983700       --> ATGTCAAAAAGATAGCCATCGGGTACAAACTAAGAAAAAACAAGATAAAG  Raphanus raphanistrum subsp. landra
EX753463       --> ATGTCAAAAAGATAGCCATCGGGTACAAACTAAGAAAAAACAACATAGAG  Raphanus raphanistrum subsp. maritimus
EX767427       --> ..GTCAAAAAGATAGCCATCGGGTACAAACTAAGAAAAAACAACATAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)

               101    -    151
UN21224        --> GTTCCAAAGGGTTTAACACAAAATGAAAAAGACGACAAAAACAGAATGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547918       <-- GTTCAAAAGGGTTTAACACAAAATGAAAAAGACGACAAAAACAGAATGCG
EX750521       <-- GTTCCAAAGGGTTTAACACAAAATGAAAAAGACGACAAAAACAGAATGCG
EX774075       <-- GTTCCAAAGGGTTTAACACAAAATGAAAAAGACGACAAAAACAGAATGCG
FD533820       <-- GTTCCAAAGGGTTTAACACAAAATGAAAAAGACGACAAAAACAGAATGCG
EX749878       <-- GTTCCAAAGGGTTTAACACAAAATGAAAAAGACGACAAAAACAGAATGCG
FD964591       <-- GTTCCAAAGGGTTTAACACAAAATGAAAAAGACGACAAAAACAGAATGCG
EX763331       <-- GTTCCAAAGGGTTTAACACAAAATGAAAAAGACGACAAAAACAGAATGCG
FD987704       <-- GTTCCAAAGGGTTTAACACAAAATGAAAAAGACGACAAAAACAGAATGCG
EV543700       --> GTTCAAAAGGGTTTAACACAAAATGAAAAAGACGACAAAAACAGAATGCG
EX753947       --> GTTCCAAAGGGTTTAACACAAAATGAAAAAGACGACAAAAACAGAATGCG
FD960551       --> GTTCCAAAGGGTTTAACACAAAATGAAAAAGACGACAAAAACAGAATGCG
EX777833       --> GTTCCAAAGGGTTTAACACAAAATGAAAAAGACGACAAAAACAGAATGCG
FD983700       --> GTTCCAAAGGGTTTAACACAAAATGAAAAAGACGACAAAAACAGAATGCG
EX753463       --> GTTCCAAAGGGTTTAACACAAAATGAAAAAGACGACAAAAACAGAATGCG
EX767427       --> GTTCCAAAGGGTTTAACACAAAATGAAAAAGACGACAAAAACAGAATGCG

               151    -    201
UN21224        --> GACAAGTATTACTCGAAAAGACTGAAACCCATGTCATCATCGGATTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547918       <-- GACAAGTATTACTCGAAAAGACTGAAACCCATGTCATCATCGGATTCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750521       <-- GACAAGTATTACTCGAAAAGACTGAAACCCATGTCATCATCGGATTCTTC  Raphanus raphanistrum subsp. maritimus
EX774075       <-- GACAAGCATTACTCGAAAAGACTGAAACCCATGTCATCATCGGATTCTTC  Raphanus raphanistrum subsp. landra
FD533820       <-- GACAAGTATTACTCGAAAAGACTGAAACCCATGTCATCATCGGATTCTTC  Raphanus raphanistrum subsp. maritimus
EX749878       <-- GACAAGTATTACTCGAAAAGACTGAAACCCATGTCATCATCGGATTCTTC  Raphanus raphanistrum subsp. maritimus
FD964591       <-- GACAAGTATTACTCGAAAAGACTGAAACCCATGTCATCATCGGATTCTTC  Raphanus raphanistrum subsp. maritimus
EX763331       <-- GACAAGTATTACTCGAAAAGACTGAAACCCATGTCATCATCGGATTCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987704       <-- GACAAGCATTACTCGAAAAGACTGAAACCCATGTCATCATCGGATTCTTC  Raphanus raphanistrum subsp. landra
EV543700       --> GACAAGTATTACTCGAAAAGACTGAAACCCATGTCATCATCGGATTCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753947       --> GACAAGTATTACTCGAAAAGACTGAAACCCATGTCATCATCGGATTCTTC  Raphanus raphanistrum subsp. maritimus
FD960551       --> GACAAGTATTACTCGAAAAGACTGAAACCCATGTCATCATCGGATTCTTC  Raphanus raphanistrum subsp. maritimus
EX777833       --> GACAAGCATTACTCGAAAAGACTGAAACCCATGTCATCATCGGATTCTTC  Raphanus raphanistrum subsp. landra
FD983700       --> GACAAGCATTACTCGAAAAGACTGAAACCCATGTCATCATCGGATTCTTC  Raphanus raphanistrum subsp. landra
EX753463       --> GACAAGTATTACTCGAAAAGACTGAAACCCATGTCATCATCGGATTCTTC  Raphanus raphanistrum subsp. maritimus
EX767427       --> GACAAGTATTACTCGAAAAGACTGAAACCCATGTCATCATCGGATTCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)

               201    -    251
UN21224        --> CTTCTCTTCTTTCTTCTCTTCCTTCTTGGCCTCAGCAGCAGGAGCAGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547918       <-- CTTCTCTTCTTTCTTCTCTTCCTTCTTGGCCTCAGCAGCAGGAGCAGCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750521       <-- CTTCTCTTCTTTCTTCTCTTCCTTCTTGGCCTCAGCAGCAGGAGCAGCAC  Raphanus raphanistrum subsp. maritimus
EX774075       <-- CTTCTCTTCTTTCTTCTCTTCCTTCTTGGCCTCAGCCGCAGGAGCAGCAC  Raphanus raphanistrum subsp. landra
FD533820       <-- CTTCTCTTCTTTCTTCTCTTCCTTCTTGGCCTCAGCAGCAGGAGCAGCAC  Raphanus raphanistrum subsp. maritimus
EX749878       <-- CTTCTCTTCTTTCTTCTCTTCCTTCTTGGCCTCAGCAGCAGGAGCAGCAC  Raphanus raphanistrum subsp. maritimus
FD964591       <-- CTTCTCTTCTTTCTTCTCTTCCTTCTTGGCCTCAGCAGCAGGAGCAGCAC  Raphanus raphanistrum subsp. maritimus
EX763331       <-- CTTCTCTTCTTTCTTCTCTTCCTTCTTGGCCTCAGCAGCAGGAGCAGCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987704       <-- CTTCTCTTCTTTCTTCTCTTCCTTCTTGGCCTCAGCCGCAGGAGCAGCAC  Raphanus raphanistrum subsp. landra
EV543700       --> CTTCTCTTCTTTCTTCTCTTCCTTCTTGGCCTCAGCAGCAGGAGCAGCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753947       --> CTTCTCTTCTTTCTTCTCTTCCTTCTTGGCCTCAGCAGCAGGAGCAGCAC  Raphanus raphanistrum subsp. maritimus
FD960551       --> CTTCTCTTCTTTCTTCTCTTCCTTCTTGGCCTCAGCAGCAGGAGCAGCAC  Raphanus raphanistrum subsp. maritimus
EX777833       --> CTTCTCTTCTTTCTTCTCTTCCTTCTTGGCCTCAGCCGCAGGAGCAGCAC  Raphanus raphanistrum subsp. landra
FD983700       --> CTTCTCTTCTTTCTTCTCTTCCTTCTTGGCCTCAGCCGCAGGAGCAGCAC  Raphanus raphanistrum subsp. landra
EX753463       --> CTTCTCTTCTTTCTTCTCTTCCTTCTTGGCCTCAGCAGCAGGAGCAGCAC  Raphanus raphanistrum subsp. maritimus
EX767427       --> CTTCTCTTCTTTCTTCTCTTCCTTCTTGGCCTCAGCAGCAGGAGCAGCAC  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN21224        --> CTCCTCCACCACCAGCAGATGGAGCAGAGGCCATGGCAACACCACCACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547918       <-- CTCCTCCACCACCAGCAGATGGAGCAGAGGCCATGGCAACACCACCACCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750521       <-- CTCCTCCACCACCAGCAGATGGAGCAGAGGCCATGGCAGCACCACCACCG  Raphanus raphanistrum subsp. maritimus
EX774075       <-- CTCCTCCACCACCGGCAGATGGAGCAGAGGCCATGGCAACACCACCACCG  Raphanus raphanistrum subsp. landra
FD533820       <-- CTCCTCCACCACCAGCAGATGGAGCAGAGGCCATGGCAACACCACCACCG  Raphanus raphanistrum subsp. maritimus
EX749878       <-- CTCCTCCACCACCAGCAGATGGAGCAGAGGCCATGGCAACACCACCACCG  Raphanus raphanistrum subsp. maritimus
FD964591       <-- CTCCTCCACCACCAGCAGATGGAGCAGAGGCCATGGCAACACCACCACCG  Raphanus raphanistrum subsp. maritimus
EX763331       <-- CTCCTCCACCACCAGCAGATGGAGCAGAGGCCATGGCAACACCACCACCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987704       <-- CTCCTCCACCACCGGCAGATGGAGCAGAGGCCATGGCAACACCACCACCG  Raphanus raphanistrum subsp. landra
EV543700       --> CTCCTCCACCACCAGCAGATGGAGCAAAGGCCATGGCAACACCACCACCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753947       --> CTCCTCCACCACCAGCAGATGGAGCAGAGGCCATGGCAGCACCACCACCG  Raphanus raphanistrum subsp. maritimus
FD960551       --> CTCCTCCACCACCAGCAGATGGAGCAGAGGCCATGGCAACACCACCACCG  Raphanus raphanistrum subsp. maritimus
EX777833       --> CTCCTCCACCACCGGCAGATGGAGCAGAGGCCATGGCAACACCACCACCG  Raphanus raphanistrum subsp. landra
FD983700       --> CTCCTCCACCACCGGCAGATGGAGCAGAGGCCATGGCAACACCACCACCG  Raphanus raphanistrum subsp. landra
EX753463       --> CTCCTCCACCACCAGCAGATGGAGCAGAGGCCATGGCAACACCACCACCG  Raphanus raphanistrum subsp. maritimus
EX767427       --> CTCCTCCACCACCAGCAGATGGAGCAGAGGCCATGGCAACACCACCACCG  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN21224        --> CTTGGAACAGAAGCCAGCTTCTCCCTACCAGCAGCGATCAATTCGCACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547918       <-- CTTGGAACAGAAGCCAGCTTCTCCCTACCAGCAGCGATCAATTCGCACAA
EX750521       <-- CTTGGAACAGAAGCCAGCTTCTCCCTACCAGCAGCGATCAATTCGCACAA
EX774075       <-- CTTGGAACAGAAGCCAGCTTCTCCCTACCAGCAGCGATCAATTCGCACAA
FD533820       <-- CTTGGAACAGAAGCCAGCTTCTCCCTACCAGCAGCGATCAATTCGCACAA
EX749878       <-- CTTGGAACAGAGGCCAGCTTCTCCCTACCAGCAGCGATCAATTCGCACAA
FD964591       <-- CTTGGAACAGAAGCCAGCTTCTCCCTACCAGCAGCGATCAATTCGCACAA
EX763331       <-- CTTGGAACAGAAGCCAGCTTCTCCCTACCAGCAGCGATCAATTCACACAA
FD987704       <-- CTTGGAACAGAAGCCAGCTTCTCCCTACCAGCAGCGATCAATTCGCACAA
EV543700       --> CTTGGAACAGAAGCCAGCTTCTCCCTACCAGCAGCGATCAATTCGCACAA
EX753947       --> CTTGGAACAGAAGCCAGCTTCTCCCTACCAGCAGCGATCAATTCGCACAA
FD960551       --> CTTGGAACAGAAGCCAGCTTCTCCCTACCAGCAGCGATCAATTCGCACAA
EX777833       --> CTTGGAACAGAAGCCAGCTTCTCCCTACCAGCAGCGATCAATTCGCACAA
FD983700       --> CTTGGAACAGAAGCCAGCTTCTCCCTACCAGCAGCGATCAATTCGCACAA
EX753463       --> CTTGGAACAGAGGCCAGCTTCTCCCTACCAGCAGCGATCAATTCGCACAA
EX767427       --> CTTGGAACAGAAGCCAGCTTCTCCCTACCAGCAGCGATCAATTCACACAA

               351    -    401
UN21224        --> GTCTTTCCCATTCACTTCCTTCAACAAAAGCTCAATCTGAGAGTCTTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547918       <-- GTCTTTCCCATTCACTTCCTTCAACAAAAGCTCAATCTGAGAGTCTTCAG
EX750521       <-- GTCTTTCCCATTCACTTCCTTCAACAAAAGCTCAATCTGAGAGTCTTCAG
EX774075       <-- GTCTTTCCCATTCACTTCCTTCAACAAAAGCTCAATCTGAGAGTCTTCAG
FD533820       <-- GTCTTTCCCATTCACTTCCTTCc...........................
EX749878       <-- GTCTTTCCCATTCACTTCCTTCAACAAAAGCTCAATCTGAGAGTCTTCAG
FD964591       <-- GTCTTTCCTATTCACTTCCTTCAACAAAAGCTCAATCTGAGAGTCTTCAG
EX763331       <-- GTCTTTCCCATTCACTTCCTTCAACAAAAGCTCAATCTGAGAGTCTTCAG
FD987704       <-- GTCTTTCCCATTCACTTCCTTCAACAAAAGCTCAATCTGAGAGTCTTCAG
EV543700       --> GTCTTTCCCATTCACTTCCTTCAACAAAAGCTCAATCTGAGAGTCTTCAG
EX753947       --> GTCTTTCCCATTCACTTCCTTCAACAAAAGCTCAATCTGAGAGTCTTCAG
FD960551       --> GTCTTTCCTATTCACTTCCTTCAACAAAAGCTCAATCTGAGAGTCTTCAG
EX777833       --> GTCTTTCCCATTCACTTCCTTCAACAAAAGCTCAATCTGAGAGTCTTCAG
FD983700       --> GTCTTTCCCATTCACTTCCTTCAACAAAAGCTCAATCTGAGAGTCTTCAG
EX753463       --> GTCTTTCCCATTCACTTCCTTCAACAAAAGCTCAATCTGAGAGTCTTCAG
EX767427       --> GTCTTTCCCATTCACTTCCTTCAACAAAAGCTCAATCTGAGAGTCTTCAG

               401    -    451
UN21224        --> ATTCACAACCAACAGATCCGAGGATACTCTTGACATCGGCACTGGTTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547918       <-- ATTCACAACCAACAGATCCGAGGATACTCTTGACATCGGCACTGGTTGGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750521       <-- ATTCACAACCAACGGATCCGAGGATACTCTTGACATCGGCACTGGTTGGG  Raphanus raphanistrum subsp. maritimus
EX774075       <-- ATTCACAACCAACAGATCCGAGGATGGTCTTGACATCGGCACTGGTTGGG  Raphanus raphanistrum subsp. landra
FD533820       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX749878       <-- ATTCACAACCAACAGATCCGAGGATACTCTTGACATCGGCACTGGTTGGG  Raphanus raphanistrum subsp. maritimus
FD964591       <-- ATTCACAACCAACAGATCCGAGGATACTCTTGACATCGGCACTGGTTGGG  Raphanus raphanistrum subsp. maritimus
EX763331       <-- ATTCACAACCAACAGATCCGAGGATACTCTTGACATCGGCACTGGTTGGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987704       <-- ATTCACAACCAACAGATCCGAGGATGGTCTTGACATCGGCACTGGTTGGG  Raphanus raphanistrum subsp. landra
EV543700       --> ATTCACAACCAACAGATCCGAGGATACTCTTGACATCGGCACTGGTTGGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753947       --> ATTCACAACCAACGGATCCGAGGATACTCTTGACATCGGCACTGGTTGGG  Raphanus raphanistrum subsp. maritimus
FD960551       --> ATTCACAACCAACAGATCCGAGGATACTCTTGACATCGGCACTGGTTGGG  Raphanus raphanistrum subsp. maritimus
EX777833       --> ATTCACAACCAACAGATCCGAGGATGGTCTTGACATCGGCACTGGTTGGG  Raphanus raphanistrum subsp. landra
FD983700       --> ATTCACAACCAACAGATCCGAGGATGGTCTTGACATCGGCACTGGTTGGG  Raphanus raphanistrum subsp. landra
EX753463       --> ATTCACAACCAACAGATCCGAGGATACTCTTGACATCGGCACTGGTTGGG  Raphanus raphanistrum subsp. maritimus
EX767427       --> ATTCACAACCAACAGATCCGAGGATACTCTTGACATCGGCACTGGTTGGG  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN21224        --> GAAGCTTTTCCGCTCAATGCGGCGAGCAGGTACGCGGCGACAACCTTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547918       <-- GAAGCTTTTCCGCTCAATGCGGCGAGCAGGTACGCGGCGACAACCTTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750521       <-- GAAGCTTTTCCGCTCAATGCGGCGAGCAGGTACGCGGCGACAACCTTCAT  Raphanus raphanistrum subsp. maritimus
EX774075       <-- GAAGCTTTCCCGCTCAAAGCGGCGAGCAAGTAAGCGGCGACAACCTTCAT  Raphanus raphanistrum subsp. landra
FD533820       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX749878       <-- GAAGCTTTTCAGCTCAATGCGGCGAGCAGGTACGCGGCGACAACCTTCAT  Raphanus raphanistrum subsp. maritimus
FD964591       <-- GAAGCTTTTCCGCTCAATGCGGCGAGCAGGTACGCGGCGACAACCTTCAT  Raphanus raphanistrum subsp. maritimus
EX763331       <-- GAAGCTTTTCCGCTCAATGCGGCGAGCAGGTACGCGGCGACAACCTTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987704       <-- GAAGCTTTCCCGCTCAAAGCGGCGAGCAAGTAAGCGGCGACAACCTTCAT  Raphanus raphanistrum subsp. landra
EV543700       --> GAAGCTTTTCCGCTCAATGCGGCGAGCAGGTACGCGGCGACAACCTTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753947       --> GAAGCTTTTCCGCTCAATGCGGCGAGCAGGTACGCGGCGACAACCTTCAT  Raphanus raphanistrum subsp. maritimus
FD960551       --> GAAGCTTTTCCGCTCAATGCGGCGAGCAGGTACGCGGCGACAACCTTCAT  Raphanus raphanistrum subsp. maritimus
EX777833       --> GAAGCTTTCCCGCTCAAAGCGGCGAGCAAGTAAGCGGCGACAACCTTCAT  Raphanus raphanistrum subsp. landra
FD983700       --> GAAGCTTTCCCGCTCAAAGCGGCGAGCAAGTAAGCGGCGACAACCTTCAT  Raphanus raphanistrum subsp. landra
EX753463       --> GAAGCTTTTCAGCTCAATGCGGCGAGCAGGTACGCGGCGACAACCTTCAT  Raphanus raphanistrum subsp. maritimus
EX767427       --> GAAGCTTTTCCGCTCAATGCGGCGAGCAGGTACGCGGCGACAACCTTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN21224        --> TTTAGCAGAAGTTTGATGGAGATCTCGAAGGAGGAGGAAAGCTCACGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547918       <-- TTTAGCAGAAGTTTGATGGAGATCTCGAAGGAGGAGGAAAGCTCACGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750521       <-- TTTAGCA-AAGTTTGAT.................................  Raphanus raphanistrum subsp. maritimus
EX774075       <-- TTTAGCAGAAGTT-GATGGAGATCTCGA-GGAGGAGGAAAGCTCACGAGA  Raphanus raphanistrum subsp. landra
FD533820       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX749878       <-- TTTAGCAGAAGTTTGATGGAGATCTCGAAGGAGGAGGAAAGCTCACGAGT  Raphanus raphanistrum subsp. maritimus
FD964591       <-- TTTAGCAGAAGTTTGATGGAGATCTCGAAGGAGGAGGAAAGCTCACGAGT  Raphanus raphanistrum subsp. maritimus
EX763331       <-- TTTAGCAGAAGTTTGATGGAGATCTCGAAGGAGGAGGAAAGCTCACGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987704       <-- TTTAGCAGAAGTT-GATGGAGATCTCGA-GGAGGAGGAAAGCTCACGAGA  Raphanus raphanistrum subsp. landra
EV543700       --> TTTAGCAGAAGTTTGATGGAGATCTCGAAGGAGGAGGAAAGCTCACGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753947       --> TTTAGCAGAAGTTTGATGGAGATCTC........................  Raphanus raphanistrum subsp. maritimus
FD960551       --> TTTAGCAGAAGTTTG...................................  Raphanus raphanistrum subsp. maritimus
EX777833       --> TTTAGCAGAAGTT-GATGGAGATCTCGA-GGAGGAGGAAAGCTCACGAGA  Raphanus raphanistrum subsp. landra
FD983700       --> TTTAGCAGAAGTT-GATGGAGATCTCGA-GGAGGAGGAAAGCTCACGAGA  Raphanus raphanistrum subsp. landra
EX753463       --> TTTAGCAGAAGTTTGATGGAGATCTCGAAGGAGGAGGAAAGCTCACGAGT  Raphanus raphanistrum subsp. maritimus
EX767427       --> TTTAGCAGAAGTTTGATGGAGATCTCGAAGGAGGAGGAAAGCTCACGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)

               551    -    601
UN21224        --> GTTTTTGAAGACGGCGATCCCCCGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547918       <-- GTTTTTGAAGACGGCGATC.......
EX750521       <-- ..........................
EX774075       <-- GTTTTTGAAGACGGCGAccc......
FD533820       <-- ..........................
EX749878       <-- GTTTTTGAAGACGGCGATCC......
FD964591       <-- GTTTTTGAAGACGGCcc.........
EX763331       <-- GTTTTTGAAGACGGCcc.........
FD987704       <-- GTTTTTGAAGACGGCcc.........
EV543700       --> GTTTTTGAAGACGGCGATC.......
EX753947       --> ..........................
FD960551       --> ..........................
EX777833       --> GTTTTTGAAGACGGCGAccc......
FD983700       --> GTTTTTGAAGACGGCcc.........
EX753463       --> GTTTTTGAAGACGGCGATCCCCCGGC
EX767427       --> GTTTTTGAAGACGGCcc.........