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Alignment for radish unigene UN21274

               1      -     51
UN21274        --> GGACTTCCACTTCCACTTCCACTTCCTTTCTATTGTTCATCAACAACAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ..................................................
FY443879       <-- ..................................................
FY433434       <-- ..................................................
EV573821       <-- ..................................................
FD566206       <-- ..................................................
EY921052       <-- ..................................................
FD984597       <-- ..................................................
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> GGACTTCCACTTCCACTTCCACTTCCTTTCTATTGTTCATCAACAACAGC
EV535920       --> ..................................................
FD988728       --> ..................................................
EY925608       --> ..................................................
FD939374       --> ..................................................
FD541566       --> ..................................................
EX898305       --> ..................................................
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               51     -    101
UN21274        --> CAAAGCCATGTCTCACACTCTCGGCCTCACCAAACCCAACTCCACCGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ..................................................
FY443879       <-- ..................................................
FY433434       <-- ..................................................
EV573821       <-- ..................................................
FD566206       <-- ..................................................
EY921052       <-- ..................................................
FD984597       <-- ..................................................
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> CAAAGCCATGTCTCACACTCTCGGCCTCACCAAACCCAACTCCACCGATC
EV535920       --> ..................................................
FD988728       --> ..................................................
EY925608       --> ..................................................
FD939374       --> ..................................................
FD541566       --> ..................................................
EX898305       --> ..................................................
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               101    -    151
UN21274        --> ATCCCAAGATCTCGTTCTCCGCGAAGGAGATCGATGTAACGGAGTGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ..................................................
FY443879       <-- ..................................................
FY433434       <-- ..................................................
EV573821       <-- ..................................................
FD566206       <-- ..................................................
EY921052       <-- ..................................................
FD984597       <-- ..................................................
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> ATCCCAAGATCTCGTTCTCCGCGAAGGAGATCGATGTAACGGAGTGGAAG
EV535920       --> ..................................................
FD988728       --> ..................................................
EY925608       --> ..................................................
FD939374       --> ..................................................
FD541566       --> ..................................................
EX898305       --> ..................................................
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               151    -    201
UN21274        --> GGGGACTTGCTCGTCGTCGGCGTGACGGAGCAAGACTTGACGAAAAACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ..................................................
FY443879       <-- ..................................................
FY433434       <-- ..................................................
EV573821       <-- ..................................................
FD566206       <-- ..................................................
EY921052       <-- ..................................................
FD984597       <-- ..................................................
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> GGGGACTTGCTCGTCGTCGGCGTGACGGAGCAAGACTTGACGAAAAACGG
EV535920       --> ..................................................
FD988728       --> ..................................................
EY925608       --> ..................................................
FD939374       --> ..................................................
FD541566       --> ..................................................
EX898305       --> ..................................................
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               201    -    251
UN21274        --> TGGCTCCTCGAAGTTCGAGAACCCGATCTTGAGCAAGCTCGATGCTCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ..................................................
FY443879       <-- ..................................................
FY433434       <-- ..................................................
EV573821       <-- ..................................................
FD566206       <-- ..................................................
EY921052       <-- ..................................................
FD984597       <-- ..................................................
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> TGGCTCCTCGAAGTTCGAGAACCCGATCTTGAGCAAGCTCGATGCTCACA
EV535920       --> ..................................................
FD988728       --> ..................................................
EY925608       --> ..................................................
FD939374       --> ..................................................
FD541566       --> ..................................................
EX898305       --> ..................................................
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               251    -    301
UN21274        --> CGAGCGGACTCTTAGGTTTAGTCTCTTCCGAGGAAGATTTCACCGGTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ..................................................
FY443879       <-- ..................................................
FY433434       <-- ..................................................
EV573821       <-- ..................................................
FD566206       <-- ..................................................
EY921052       <-- ..................................................
FD984597       <-- ..................................................
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> CGAGCGGACTCTTAGGTTTAGTCTCTTCCGAGGAAGATTTCACCGGTAAA
EV535920       --> ..................................................
FD988728       --> ..................................................
EY925608       --> ..................................................
FD939374       --> ..................................................
FD541566       --> ..................................................
EX898305       --> ..................................................
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               301    -    351
UN21274        --> CCCGGTCAGTCAACGGTTCTCAGACTTCCCGGTTTAGCATCCAAACGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ..................................................
FY443879       <-- ..................................................
FY433434       <-- ..................................................
EV573821       <-- ..................................................
FD566206       <-- ..................................................
EY921052       <-- ..................................................
FD984597       <-- ..................................................
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> CCCGGTCAGTCAACGGTTCTCAGACTTCCCGGTTTAGCATCCAAACGGAT
EV535920       --> ..................................................
FD988728       --> ..................................................
EY925608       --> ..................................................
FD939374       --> ..................................................
FD541566       --> ..................................................
EX898305       --> ..................................................
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               351    -    401
UN21274        --> CGGTTTGATCGGTTTAGGAAAATCATCTCCCGCGGCTTTTCAGAGCCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ..................................................
FY443879       <-- ..................................................
FY433434       <-- ..................................................
EV573821       <-- ..................................................
FD566206       <-- ..................................................
EY921052       <-- ..................................................
FD984597       <-- ..................................................
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> CGGTTTGATCGGTTTAGGAAAATCATCTCCCGCGGCTTTTCAGAGCCTTG
EV535920       --> ..................................................
FD988728       --> ..................................................
EY925608       --> ..................................................
FD939374       --> ..................................................
FD541566       --> ..................................................
EX898305       --> ..................................................
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               401    -    451
UN21274        --> GCGAAGGTGTAGCCACAGTGTCGAAGGCTTCACAGTCTAGTACTGTTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ..................................................
FY443879       <-- ..................................................
FY433434       <-- ..................................................
EV573821       <-- ..................................................
FD566206       <-- ..................................................
EY921052       <-- ..................................................
FD984597       <-- ..................................................
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> GCGAAGGTGTAGCCACAGTGTCGAAGGCTTCACAGTCTAGTACTGTTGCT
EV535920       --> ..................................................
FD988728       --> ..................................................
EY925608       --> ..................................................
FD939374       --> ..................................................
FD541566       --> ..................................................
EX898305       --> ..................................................
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               451    -    501
UN21274        --> GTTGTTCTTGCCTCACCTGAGAGTGAATCCATCTATGCTTCGGCTATAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ..................................................
FY443879       <-- ..................................................
FY433434       <-- ..................................................
EV573821       <-- ..................................................
FD566206       <-- ..................................................
EY921052       <-- ..................................................
FD984597       <-- ..................................................
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> GTTGTTCTTGCCTCACCTGAGAGTGAATCCATCTATGCTTCGGCTATAGC
EV535920       --> ..................................................
FD988728       --> ..................................................
EY925608       --> ..................................................
FD939374       --> ..................................................
FD541566       --> ..................................................
EX898305       --> ..................................................
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               501    -    551
UN21274        --> TTCAGGCGTAGTGCTGGGGCTATTCGAAGACGGGAGGTATAAGTCTGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ..................................................
FY443879       <-- ..................................................
FY433434       <-- ..................................................
EV573821       <-- ..................................................
FD566206       <-- ..................................................
EY921052       <-- ..................................................
FD984597       <-- ..................................................
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> TTCAGGCGTAGTGCTGGGGCTATTCGAAGACGGGAGGTATAAGTCTGAGT
EV535920       --> ..................................................
FD988728       --> ..................................................
EY925608       --> ..................................................
FD939374       --> ..................................................
FD541566       --> ..................................................
EX898305       --> ..................................................
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               551    -    601
UN21274        --> CAAAGAAACCATCTTTGAAGTCTGTGGATATCATTGGGTTTGGAGCTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ..................................................
FY443879       <-- ..................................................
FY433434       <-- ..................................................
EV573821       <-- ..................................................
FD566206       <-- ..................................................
EY921052       <-- ..................................................
FD984597       <-- ..................................................
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> CAAAGAAACCATCTTTGAAGTCTGTGGATATCATTGGGTTTGGAGCTGGA
EV535920       --> .........gATCTTTGAGCTCTGTGGATATCATTGGGTTTGGAACTGGA
FD988728       --> .........................................GGAGCTGGA
EY925608       --> .............................................CTGGA
FD939374       --> ..................................................
FD541566       --> ..................................................
EX898305       --> ..................................................
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               601    -    651
UN21274        --> TCTGAATTGGAGAAGAAGCTTAAGTATGCTGAAGATGTTTCTTACGGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ..................................................
FY443879       <-- ..................................................
FY433434       <-- ..................................................
EV573821       <-- ..................................................
FD566206       <-- ..................................................
EY921052       <-- ..................................................
FD984597       <-- ..................................................
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> TCTGAATTGGAGAAGAAGCTTAAGTATGCTGAAGATGTTTCTTACGGTGT
EV535920       --> CCTGAATTGGAGAAGAAGCTTAAGTATGCTGAAGATGTTTCTTACGGTGT
FD988728       --> TCTGAATTGGAGAAGAAGCTTAAGTATGCTGAAGATGTT-CTTACGGTGT
EY925608       --> TCTGAATTGGAGAAGAAGCTTAAGTATGCTGAAGATGTTTCTTACGGTGT
FD939374       --> ..................................................
FD541566       --> ..................................................
EX898305       --> ..................................................
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               651    -    701
UN21274        --> GATTTTCGGGAGAGAGCTCATTAACTCGCCTGCCAATGTCCTCACTCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ..................................................
FY443879       <-- ..................................................
FY433434       <-- ..................................................
EV573821       <-- ..................................................
FD566206       <-- ..................................................
EY921052       <-- ..................................................
FD984597       <-- ..................................................
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> GATTTTCGGGAGAGAGCTCATTAACTCGCCTGCCAATGTCCTCACTCCTG
EV535920       --> GATTTTCGGGAGGGAGCTCATTAACTCCCCTGCCAATGTCCTCACTCCTG
FD988728       --> GATTTTCGGGAGAGAGCTCATTAACTCGCCTGCCAATGTCCTCACTCCTG
EY925608       --> GGTTTTCGGGAGAGAGCTCATTAACTCGCCTGCCAATGTCCTCACTCCTG
FD939374       --> ..................................................
FD541566       --> ..................................................
EX898305       --> ..................................................
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               701    -    751
UN21274        --> CTGTGTTAGCTGAGGAAGCGGCAAAAGTGGCTTCTACGTACAGTGATGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ..................................................
FY443879       <-- ..................................................
FY433434       <-- ..................................................
EV573821       <-- ..................................................
FD566206       <-- ..................................................
EY921052       <-- ..................................................
FD984597       <-- ..................................................
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> CTGTGTTAGCTGAGGAAGCGGCAAAAGTGGCTTCTACGTACAGTGATGTG
EV535920       --> CTGTGTTAGCTGAGGAAGCGGCAAAAGTGGCTTCTACGTACAGTGATGTG
FD988728       --> CTGTGTTAGCTGAGGAAG................................
EY925608       --> CTGTGTTAGCTGAGGAAGCGGCAAAAGTGGCTTCTACGTACAGTGATGTG
FD939374       --> ..................................................
FD541566       --> ..................................................
EX898305       --> ..................................................
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               751    -    801
UN21274        --> TTTACAGCGAACATCTTGAACGAGGAGCAGTGCAGAGAGTTGAAGATGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ..................................................
FY443879       <-- ..................................................
FY433434       <-- ..................................................
EV573821       <-- ..................................................
FD566206       <-- ..................................................
EY921052       <-- ..................................................
FD984597       <-- ..................................................
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> TTTACAGCGAACATCTTGAACGAGGAGCAGTGCAGAGAGTTGAAGATGGG
EV535920       --> TTTACGGCGAATATCTTGAACGAGGAGCAGTGCAGGGAGTTGAAGATGGG
FD988728       --> ..................................................
EY925608       --> TTTACAGCGAACATCTTGAACGAGGAGCAGTGCAGAGAGTTGAAGATGGG
FD939374       --> ..................................................
FD541566       --> ..................................................
EX898305       --> ..................................................
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               801    -    851
UN21274        --> ATCTTATCTAGCCGTTGCTGCTGCTTCGGCTAATCCTCCTTTCTTCATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ..................................................
FY443879       <-- ..................................................
FY433434       <-- ..................................................
EV573821       <-- ..................................................
FD566206       <-- ..................................................
EY921052       <-- ..................................................
FD984597       <-- ..................................................
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> ATCTTATCTAGCCGTTGCTGCTGCTTCGGCTAATCCTCCTTTCTTCATTC
EV535920       --> TTCTTATCTAGCCGTTGCTGCTGCGTCGGCTAATCCTCCTTTCTTTATTC
FD988728       --> ..................................................
EY925608       --> ATCTTATCTAGCCGTTGCTGCTGCTTCGGCTAATCCCCCTTTCTTCATTC
FD939374       --> ......gCTAGCCGTTGCTGCTGCGTCGGCTAATCCTCCTTTCTTCATTC
FD541566       --> ..................................................
EX898305       --> ..................................................
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               851    -    901
UN21274        --> ACCTTGTGTATAAACCTTCGAGTGGCGGTGTTAAGACCAAGCTTGCTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ....................AGTGGCGGTGTTAAGACCAAGCTTGCTCTT
FY443879       <-- .......................................AGCTTGCTCTT
FY433434       <-- ..................................................
EV573821       <-- ..................................................
FD566206       <-- ..................................................
EY921052       <-- ..................................................
FD984597       <-- ..................................................
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> ACCTTGTGTAT.......................................
EV535920       --> ACCTTGTGTATAAACCTTCGAGTGGCGGTGTTAAGACCAAGCTTGCTCTT
FD988728       --> ..................................................
EY925608       --> ACCTTGTGTATAGACCTTCCGGTGGCGATGTTAAGACAAAGCTTGCTCTT
FD939374       --> ACCTTGTGTATAAACCTTCGAGTGGAGGTGTTAAGAGCAAGCTTGCTCTT
FD541566       --> ..................................................
EX898305       --> ..................................................
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               901    -    951
UN21274        --> GTTGGTAAAGGATTGACCTTTGACAGTGGTGGCTACAACATTAAGACTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- GTTGGTAAAGGATTGACCTTTGACAGTGGTGGCTACAACATTAAGACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443879       <-- GTTGTAAAAGGATTGACCTTTGACAGTGGTGGCTACAACATTAAGACCGG  Raphanus sativus cv GSK3-1
FY433434       <-- .TTGGTAAAGGATTGACCTTTGACAGTGGTGGCTACAACATTAAGACCGG  Raphanus sativus cv GSK3-1
EV573821       <-- ............TTGAC-TTTGACAGTGGTGGCTACAACATTAAGACTGG  Raphanus raphanistrum subsp. landra
FD566206       <-- ..............tgaCTTTGACAGTGG-GGCTACAACATTAAGACCGG  Raphanus sativus var. oleiformis
EY921052       <-- .....................GACAGTGGTGGCTACA-CATTAAGACTG-  Raphanus raphanistrum subsp. landra
FD984597       <-- .....................GACAGTGG-GGCTACAACATTAAGACTGG  Raphanus raphanistrum subsp. landra
EX901899       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY927392       <-- ..................................................  Raphanus sativus var. oleiformis
EV540009       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531708       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD935513       <-- ..................................................  Raphanus sativus var. oleiformis
EY912039       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428751       <-- ..................................................  Raphanus sativus cv GSK3-1
EV569234       --> ..................................................  Raphanus raphanistrum subsp. landra
EV535920       --> GTTGGTAAAGGATTGACCTTTGACAGTGGTGGCTACAACATTAAGACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD988728       --> ..................................................  Raphanus raphanistrum subsp. landra
EY925608       --> GTTGGAAAAGGATTGACCTTTGACAGTGGTGGCTACAACATTAAGACTGG  Raphanus raphanistrum subsp. landra
FD939374       --> GTTGGAAAAGGATTGACCTTTGACAGTGGTGGCTACAACATTAAGACCGG  Raphanus sativus var. oleiformis
FD541566       --> ..............................................ggGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898305       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY916346       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY904762       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559607       --> ..................................................  Raphanus raphanistrum subsp. landra

               951    -   1001
UN21274        --> ACCTGGCTGCTCCATTGAGCTCATGAAATTCGACATGGGTGGTTCAGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ACCTGGCTGCTCCATTGAGCTCATGAAATTCGACATGGGTGGTTCAGCTG
FY443879       <-- ACCTGGCTGCTCCATTGAGCTCATGAAATTCGACATGGGTGGTTCAGCTG
FY433434       <-- ACCTGGCTGCTCCATTGAGCTCATGAAATTCGACATGGGTGGTTCAGCTG
EV573821       <-- ACCTGGCTGCTCCATTGAGCTCATGAAATTCGACATGGGTGGTTCAGCTG
FD566206       <-- ACCTGGCTGCTCCAT-GAGCTCATGAAATTCGACATGGGTGGTTCAGCTG
EY921052       <-- ACCTGGCTGCTCCAT-GAGCTCATGAAATTCGACATGGGTGGTTCAGCTG
FD984597       <-- ACCTGGCTGCTCCATTGAGCTCATGAAATTCGACATGGGTGGTTCAGCTG
EX901899       <-- ..................................................
EY927392       <-- ..................................................
EV540009       <-- ..................................................
FD531708       <-- ..................................................
FD935513       <-- ..................................................
EY912039       <-- ..................................................
FY428751       <-- ..................................................
EV569234       --> ..................................................
EV535920       --> ACCTGGCTGCTCCATTGAGCTCATGAAATTCGACATGGGTGGTTCAGCTG
FD988728       --> ..................................................
EY925608       --> ACCTGGCTGCTCCATTGAGCTCATGAAATTCGACATGGGTGGTTCAGCTG
FD939374       --> ACCTGGCTGCTCCATTGAGCTCATGAAATTCGACATGGGTGGTTCAGCTG
FD541566       --> ACCTGGCTGCTCTATTGAGCTCATGAAATTCGACATGGGTGGTTCAGCTG
EX898305       --> ........GCTCCATTGAGCTCATGAAATTCGACATGGGTGGTTCAGCTG
EY916346       --> .................................gATGGGTGGTTCAGCTG
EY904762       --> .............................................gGCTG
FD559607       --> ..................................................

               1001   -   1051
UN21274        --> CTGTCCTTGGCGCTGCGAAAGCCATTGGTGAGATTAAGCCTCCTGGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- CTGTTCTTGGCGCTGCGAAAGCCATTGGTGAGATTAAGCCGCCTGGTGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443879       <-- CTGTCCTTGGCGCTGCCAAAGCCATTGGTGAGATTAAGCCTCCTGGTGTT  Raphanus sativus cv GSK3-1
FY433434       <-- CTGTCCTTGGCGCTGCCAAAGCCATTGGTGAGATTAAGCCTCCTGGTGTT  Raphanus sativus cv GSK3-1
EV573821       <-- CTGTTCTTGGCGCTGCGAAAGCCATTGGTGAGATTAAGCCTCCTGGTGTT  Raphanus raphanistrum subsp. landra
FD566206       <-- CTGTCCTTGGCGCTGCAAAAGCCATTGGTGAGATTAAGCCTCCTGGTGTT  Raphanus sativus var. oleiformis
EY921052       <-- CTGTTC-TGGCGCTGCGAAAGCCATTGGTGAGATTAAGCCTCCTGGTGTT  Raphanus raphanistrum subsp. landra
FD984597       <-- CTGTTCTTGGCGCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTT  Raphanus raphanistrum subsp. landra
EX901899       <-- ...TCCTTGGTGCTGCGAAAGCCATTGGTGAGATTAAGCCTCCTGGTGTT  Raphanus sativus cv Early Scarlet Globe
EY927392       <-- .........GCGCTGCCAAAGCCATTGGTGAGATTAAGCCTCCTGGTGTT  Raphanus sativus var. oleiformis
EV540009       <-- ............CTGCGAAAGCCATTGGTGAGATTAAGCCTCCTGGTGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531708       <-- .............TGCGAAAGCCATTGGTGAGATTAAGCCTCCTGGTGTT  Raphanus raphanistrum subsp. maritimus
FD935513       <-- ..................................................  Raphanus sativus var. oleiformis
EY912039       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428751       <-- ..................................................  Raphanus sativus cv GSK3-1
EV569234       --> ..................................................  Raphanus raphanistrum subsp. landra
EV535920       --> CTGTTCTTGGCGCTGCGAAAGCCATTGGTGAGATTAAGCCGCCTGGTGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD988728       --> ..................................................  Raphanus raphanistrum subsp. landra
EY925608       --> CTGTTCTTGGCGCTGCGAAAGCCATTGGTGAGATTAAGCCTCCTGGTGTT  Raphanus raphanistrum subsp. landra
FD939374       --> CTGTCCTTGGCGCTGCAAAAGCCATTGGTGAGATTAAGCCTCCTGGTGTT  Raphanus sativus var. oleiformis
FD541566       --> CTGTCCTTGGTGCTGCGAAAGCCATTGGTGAGATTAAGCCTCCTGGTGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898305       --> CTGTCCTTGGTGCTGCGAAAGCCATTGGTGAGATTAAGCCTCCTGGTGTT  Raphanus sativus cv Early Scarlet Globe
EY916346       --> CTGTCCTTGGCGCTGCCAAAGCCATTGGCGAGATTAAGCCTCCTGGTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY904762       --> CTGTCCTTGGTGCTGCGAAAGCCATTGGTGAGATTAAGCCTCCTGGTGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559607       --> ..................................................  Raphanus raphanistrum subsp. landra

               1051   -   1101
UN21274        --> GAGGTTCATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- GAGGTTCATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443879       <-- GAGGTTCATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG  Raphanus sativus cv GSK3-1
FY433434       <-- GAGGTTCATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG  Raphanus sativus cv GSK3-1
EV573821       <-- GAGGTACATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG  Raphanus raphanistrum subsp. landra
FD566206       <-- GAGGTTCATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG  Raphanus sativus var. oleiformis
EY921052       <-- GAGGTACATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG  Raphanus raphanistrum subsp. landra
FD984597       <-- GAGGTACATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG  Raphanus raphanistrum subsp. landra
EX901899       <-- GAGGTTCATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG  Raphanus sativus cv Early Scarlet Globe
EY927392       <-- GAGGTTCATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG  Raphanus sativus var. oleiformis
EV540009       <-- GAGGTTCATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531708       <-- GAGGTTCATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG  Raphanus raphanistrum subsp. maritimus
FD935513       <-- ...........................GAGAATATGATTAGTGGAACTGG  Raphanus sativus var. oleiformis
EY912039       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428751       <-- ..................................................  Raphanus sativus cv GSK3-1
EV569234       --> ..................................................  Raphanus raphanistrum subsp. landra
EV535920       --> GAGGTTCATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD988728       --> ..................................................  Raphanus raphanistrum subsp. landra
EY925608       --> GAGGTACATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG  Raphanus raphanistrum subsp. landra
FD939374       --> GAGGTTCATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG  Raphanus sativus var. oleiformis
FD541566       --> GAGGTTCATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898305       --> GAGGTTCATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG  Raphanus sativus cv Early Scarlet Globe
EY916346       --> GAGGTTCATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY904762       --> GAGGTTCATTTCATCGTTGCAGCCTGTGAGAATATGATTAGTGGAACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559607       --> ..................................................  Raphanus raphanistrum subsp. landra

               1101   -   1151
UN21274        --> AATGAGACCTGGAGATGTCATCACAGCCTCAAACGGAAAGACCATTGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- AATGAGACCTGGAGATGTCATCACAGCCTCAAACGGAAAGACCATTGAGG
FY443879       <-- AATGAGACCTGGAGATGTCATCACAGCCTCAAACGGAAAGACCATTGAGG
FY433434       <-- AATGAGACCTGGAGATGTCATCACAGCCTCAAACGGAAAGACCATTGAGG
EV573821       <-- AATGAGACCTGGAGATGTCATCACAGCCTCAAACGGAAAGATCATTGAGG
FD566206       <-- AATGAGACCTGGAGATGTCATCACAGCCTCAAACGGAAAGACCATTGAGG
EY921052       <-- AATGAGACCTGGAGATGTCATCACAGCCTCAAACGGAAAGACCATTGAGG
FD984597       <-- AATGAGACCTGGAGATGTCATCACAGCCTCAAACTGAAAGACCATTGAGG
EX901899       <-- AATGAGACCTGGAGATGTCATCACAGCCTCTAACGGAAAGACCATTGAGG
EY927392       <-- AATGAGACCTGGAGATGTCATCACAGCCTCAAACGGAAAGACCATTGAGG
EV540009       <-- AATGAGACCTGGAGATGTCATCACAGCCTCAAACGGAAAGACCATTGAGG
FD531708       <-- AATGAGACCTGGAGATGTCATCACAGCCTCAAACGGAAAGACCATTGAGG
FD935513       <-- AATGAGACCTGGGGATGTCATCACAGCCTCAAACGAAAAGACCATTGAGG
EY912039       <-- .......................CAGCCTCAAACGGAAAGACCATTGAGG
FY428751       <-- ..................................................
EV569234       --> ..................................................
EV535920       --> AATGAGACCTGGAGATGTCATCACAGCCTCAAACGGAAAGACCATTGAGG
FD988728       --> ..................................................
EY925608       --> AATGAGACCTGGAGATGTCATCACAGCCTCAAACGGAAAGACCATTGAGG
FD939374       --> AATGAGACCTGGGGATGTCATCACAGCCTCAAACGAAAAGACCATTGAGG
FD541566       --> AATGAGACCTGGAGATGTCATCACAGCCTCAAACGGAAAGACCATTGAGG
EX898305       --> AATGAGACCTGGAGATGTCATCACAGCCTCTAACGGAAAGACCATTGAGG
EY916346       --> AATGAGACCTGGAGATGTCATCACAGCCTCAAACGGAAAGACCATTGAGG
EY904762       --> AATGAGACCTGGAGATGTCATCACAGCCTCAAACGGAAAGACCATTGAGG
FD559607       --> ..................................................

               1151   -   1201
UN21274        --> TGAACAACACAGATGCTGAAGGACGTTTAACACTTGCTGATGCTCTAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- TGAACAACACAGATGCTGAAGGTCGTTTAACACTTGCTGATGCTCTAGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443879       <-- TGAACAACACAGATGCTGAAGGACGTTTAACACTTGCTGATGCTCTAGTG  Raphanus sativus cv GSK3-1
FY433434       <-- TGAACAACACAGATGCTGAAGGACGTTTAACACTTGCTGATGCTCTAGTG  Raphanus sativus cv GSK3-1
EV573821       <-- TGAACAACACAGATGCTGAAGGACGTTTAACACTTGCTGATGCTTTAGTG  Raphanus raphanistrum subsp. landra
FD566206       <-- TGAACAACACAGATGCTGAAGGACGTTTAACACTTGCTGATGCTCTAGTG  Raphanus sativus var. oleiformis
EY921052       <-- TGAACAACACAGATGCTGAAGGACGTTTAACACTTGCTGATGCTTTAGTG  Raphanus raphanistrum subsp. landra
FD984597       <-- TGAACAACACAGATGCTGAAGGACGTTTAACACTTGCTGATGCTTTAGTG  Raphanus raphanistrum subsp. landra
EX901899       <-- TGAACAACACAGATGCTGAAGGTCGTCTAACACTTGCTGATGCTCTAGTG  Raphanus sativus cv Early Scarlet Globe
EY927392       <-- TGAACAACACAGATGCTGAAGGACGTTTAACACTTGCCGATGCTCTAGTG  Raphanus sativus var. oleiformis
EV540009       <-- TGAACAACACAGATGCTGAAGGTCGTTTAACACTTGCTGATGCTCTAGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531708       <-- TGAACAACACAGATGCTGAAGGACGTTTAACACTTGCTGATGCTCTAGTG  Raphanus raphanistrum subsp. maritimus
FD935513       <-- TGAACAACACAGATGCTGAAGGACGTTTAACACTTGCTGATGCTCTAGTG  Raphanus sativus var. oleiformis
EY912039       <-- TGAACAACACAGATGCTGAAGGACGTTTAACACTTGCTGATGCTCTAGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428751       <-- ..................................................  Raphanus sativus cv GSK3-1
EV569234       --> ..................................................  Raphanus raphanistrum subsp. landra
EV535920       --> TGAACAACACAGATGCTGAAGGTCGTTTAACACTTGCTGATGCTCTAGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD988728       --> ..................................................  Raphanus raphanistrum subsp. landra
EY925608       --> TGAACAACACAGATGCTGAAGGACGTTTAACACTTGCTGATGCTTTAGTG  Raphanus raphanistrum subsp. landra
FD939374       --> TGAACAACACAGATGCTGAAGGACGTTTAACACTTGCTGATGCTCTAGTG  Raphanus sativus var. oleiformis
FD541566       --> TGAACAACACAGATGCTGAAGGTCGTTTAACACTTGCTGATGCTCTAGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898305       --> TGAACAACACAGATGCTGAAGGTCGTCTAACACTTGCTGATGCTCTAGTG  Raphanus sativus cv Early Scarlet Globe
EY916346       --> TGAACAACACAGATGCTGAAGGACGTTTAACACTTGCTGATGCTCTAGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY904762       --> TGAACAACACAGATGCTGAAGGTCGTTTAACACTTGCTGATGCTCTAGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559607       --> ..................................................  Raphanus raphanistrum subsp. landra

               1201   -   1251
UN21274        --> TATGCTTGTAACCAAGGCGTTGACAAGATTGTTGACCTCGCTACGTTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- TATGCTTGTAACCAAGGCGTTGACAAGATTGTTGACCTCGCTACGTTGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443879       <-- TATGCTTGTAACCAAGGCGTTGACAAGATTGTTGACCTCGCTACATTGAC  Raphanus sativus cv GSK3-1
FY433434       <-- TATGCTTGTAACCAAGGCGTTGACAAGATTGTTGACCTCGCTACATTGAC  Raphanus sativus cv GSK3-1
EV573821       <-- TATGCTTGTAACCAAGGCGTTGACAAAATTGTTGACCTCGCTACGTTGAC  Raphanus raphanistrum subsp. landra
FD566206       <-- TATGCTTGTAACCAAGGCGTTGACAAGATTGTTGACCTCGCTACGTTGAC  Raphanus sativus var. oleiformis
EY921052       <-- TATGCTTGTAACCAAGGCGTTGACAAGATTGTTGACCTCGCTACGTTGAC  Raphanus raphanistrum subsp. landra
FD984597       <-- TATGCTTGTAGCCAAGCCGTTGACAAGATTGTTGACCTCGCTACGTTGAC  Raphanus raphanistrum subsp. landra
EX901899       <-- TATGCTTGTAACCAAGGCGTTGACAAGATTGTTGACCTCGCTACATTGAC  Raphanus sativus cv Early Scarlet Globe
EY927392       <-- TATGCTTGTAACCAAGGCGTCGACAAGATTGTTGACCTCGCTACATTGAC  Raphanus sativus var. oleiformis
EV540009       <-- TATGCTTGTAACCAAGGCGTTGACAAGATTGTTGACCTCGCTACGTTGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531708       <-- TATGCTTGTAACCAAGGCGTTGACAAGATTGTTGACCTCGCTACGTTGAC  Raphanus raphanistrum subsp. maritimus
FD935513       <-- TATGCTTGTAACCAAGGCGTTGACAAGATTGTTGACCTCGCTACGTTGAC  Raphanus sativus var. oleiformis
EY912039       <-- TATGCTTGTAACCAAGGCGTTGACAAGATTGTTGACCTCGCTACATTGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428751       <-- ..................................................  Raphanus sativus cv GSK3-1
EV569234       --> ..................................................  Raphanus raphanistrum subsp. landra
EV535920       --> TATGCTTGTAACCAAAGCGTTGACAAGATTGTTGACCTCGCTACGTTGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD988728       --> ..................................................  Raphanus raphanistrum subsp. landra
EY925608       --> TATGCTTGTAACCAAAGCGTTGACAAGATTGTTGACCTCGCTACGTTGAC  Raphanus raphanistrum subsp. landra
FD939374       --> TATGCTTGTAACCAAGGCGTTGACAAGATTGTTGACCTCGCTACGTTGAC  Raphanus sativus var. oleiformis
FD541566       --> TATGCTTGTAACCAAGGCGTTGACAAGATTGTTGACCTCGCTACTTTGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898305       --> TATGCTTGTAACCAAGGCGTTGACAAGATTGTTGACCTCGCTACATTGAC  Raphanus sativus cv Early Scarlet Globe
EY916346       --> TATGCTTGTAACCAAGGCGTTGACAAGATTGTTGACCTCGCTACATTGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY904762       --> TATGCTTGTAACCAAGGCGTTGACAAGATTGTTGACCTCGCTACGTTGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559607       --> ..................................................  Raphanus raphanistrum subsp. landra

               1251   -   1301
UN21274        --> CGGAGCCTGTGTTATTGCTCTTGGAACATCAGTGGCAGGGATCTACACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- CGGAGCCTGTGTTATTGCTCTTGGAACATCAGTGGCAGGGATCTACACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443879       <-- CGGAGCCTGTGTTATTGCTCTTGGAACATCAGTGGCAGGGATCTACACAC  Raphanus sativus cv GSK3-1
FY433434       <-- CGGAGCCTGTGTTATTGCTCTTGGAACATCAGTGGCAGGGATCTACACAC  Raphanus sativus cv GSK3-1
EV573821       <-- TGGAGCCTGCGTTATTGCTCTTGGAACATCAGTGGCAGGGATCTACACAC  Raphanus raphanistrum subsp. landra
FD566206       <-- CGGAGCCTGCGTTATTGCTCTTGGAACATCAGTGGCAGGGATCTACACAC  Raphanus sativus var. oleiformis
EY921052       <-- TGGAGCCTGCGTTATTGCTCTTGGAACATCAGTGGCAGGGATCTACACAC  Raphanus raphanistrum subsp. landra
FD984597       <-- TGGAGCCTGCGTTATCGCTCTTGGAACATCAGTGGCAGGGATCTACACAC  Raphanus raphanistrum subsp. landra
EX901899       <-- CGGAGCCTGTGTTATTGCTCTTGGAACATCAGTGGCAGGGATCTACACAC  Raphanus sativus cv Early Scarlet Globe
EY927392       <-- CGGAGCCTGTGTTATTGCTCTTGGAACATCAGTGGCAGGGATCTACACAC  Raphanus sativus var. oleiformis
EV540009       <-- CGGAGCCTGTGTTATTGCTCTTGGAACATCAGTGGCAGGGATCTACACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531708       <-- CGGAGCCTGCGTTATTGCTCTTGGAACATCAGTGGCAGGGATCTACACAC  Raphanus raphanistrum subsp. maritimus
FD935513       <-- CGGAGCCTGCGTTATTGCTCTTGGAACATCAGTGGCAGGGATCTACACAC  Raphanus sativus var. oleiformis
EY912039       <-- CGGAGCCTGTGTTATTGCTCTTGGAACATCAGTGGCAGGGATCTACACAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428751       <-- ..................................................  Raphanus sativus cv GSK3-1
EV569234       --> ..................................................  Raphanus raphanistrum subsp. landra
EV535920       --> CGGAGCCTGTGTTATTGCTCTTGGAACATCAGTGGCAGG-ATCTACACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD988728       --> ..................................................  Raphanus raphanistrum subsp. landra
EY925608       --> TGGAGCCTGCGTTATTGCTCTTGGAcatc.....................  Raphanus raphanistrum subsp. landra
FD939374       --> CGGAGCCTGCGTTATTGCTCTTGGAACATCAGTGGCAGGGATCTACACAC  Raphanus sativus var. oleiformis
FD541566       --> CGGAGCCTGTGTTATTGCTCTTGGAACATCAGTGGCAGGGATCTACACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898305       --> CGGAGCCTGTGTTATTGCTCTTGGAACATCAGTGGCAGGGATCTACACAC  Raphanus sativus cv Early Scarlet Globe
EY916346       --> CGGAGCCTGTGTTATTGCTCTTGGAACATCAGTGGCAGGGATCTACACAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY904762       --> CGGAGCCTGTGTTATTGCTCTTGGAACATCAGTGGCAGGGATCTACACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559607       --> .................................GGCAGGGATCTACACAC  Raphanus raphanistrum subsp. landra

               1301   -   1351
UN21274        --> CTAACGACGAGCTTGCAAAGGAAGTGATTGCTGCGTCAGAGAAGAGTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- CTAACGACGAGCTTGCAAAGGAAGTGATTGCTGCGTCAGAGAAGAGTGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443879       <-- CTAACGACGAGCTTGCTAAGGAAGTGATTGCTGCGTCAGAGAAGAGTGGA  Raphanus sativus cv GSK3-1
FY433434       <-- CTAACGACGAGCTTGCTAAGGAAGTGATTGCTGCGTCAGAGAAGAGTGGA  Raphanus sativus cv GSK3-1
EV573821       <-- CTAACGACGAGCTTGCAAAAGAAGTGATTGCTGCGTCAGAGAAGAGTGGA  Raphanus raphanistrum subsp. landra
FD566206       <-- CTAACGACGAGCTTGCAAAAGAAGTGATTGCTGCGTCAGAGAAGAGTGGA  Raphanus sativus var. oleiformis
EY921052       <-- CTAACGACGAGCTTGCAAAAGAAGTGATTGCTGCGTCAGAGAAGAGTGGA  Raphanus raphanistrum subsp. landra
FD984597       <-- CTAACGACGAGCTTGCAAAAGAAGTGATTGCTGCGTCAGAGAAGAGTGGA  Raphanus raphanistrum subsp. landra
EX901899       <-- CTAACGACGAGCTTGCAAAGGAAGTGATTGCTGCGTCAGAGAGGAGTGGA  Raphanus sativus cv Early Scarlet Globe
EY927392       <-- CTAACGACGAGCTTGCTAAGGAAGTGATTGCTGCGTCAGAGAAGAGTGGA  Raphanus sativus var. oleiformis
EV540009       <-- CTAACGACGAGCTTGCAAAGGAAGTGATTGCTGCGTCAGAGAAGAGTGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531708       <-- CTAACGACGAGCTTGCAAAAGAAGTAATTGCTGCGTCAGAGAAGAGTGGA  Raphanus raphanistrum subsp. maritimus
FD935513       <-- CTAACGACGAGCTTGCAAAAGAAGTGATTGCTGCGTCAGAGAAGAGTGGA  Raphanus sativus var. oleiformis
EY912039       <-- CTAACGACGAGCTTACTAAGGAAGTGATTGCTGCGTCAGAGAAGAGTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428751       <-- ..AACGACGAGCTTGCTAAGGAAGTGATTGCTGCGTCAGAGAAGAGTGGA  Raphanus sativus cv GSK3-1
EV569234       --> ..................................................  Raphanus raphanistrum subsp. landra
EV535920       --> CTAACGACGAGCTTGCAAAGGAAGTGATTGCTGCGTCAGAGAAGA.....  Raphanus raphanistrum subsp. raphanistrum (MS)
FD988728       --> ..................................................  Raphanus raphanistrum subsp. landra
EY925608       --> ..................................................  Raphanus raphanistrum subsp. landra
FD939374       --> CTAACGACGAGCTTGCAAAAGAAGTGATTGCTGCGTCAGAGAAGAGTGGA  Raphanus sativus var. oleiformis
FD541566       --> CTAACGACGAGCTTGCAAAGGAAGTGATTGCTGCGTCAGAGAAGAGTGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898305       --> CTAACGACGAGCTTGCAAAGGAAGTGATTGCTGCGTCAGAGAGGAGTGGA  Raphanus sativus cv Early Scarlet Globe
EY916346       --> CTAACGACGAGCTTACTAAGGAAGTGATTGCTGCGTCAGAGAAGAGTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY904762       --> CTAACGACGAGCTTGCAAAGGAAGTGATTGCTGCGTCAGAGAAGAGTGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559607       --> CTAACGACGAGCTTGCAAAAGAAGTGATTGCTGCGTCAGAGAAGAGTGGA  Raphanus raphanistrum subsp. landra

               1351   -   1401
UN21274        --> GAGAAGCTGTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- GAGAAGCTGTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443879       <-- GAGAAGCTTTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus sativus cv GSK3-1
FY433434       <-- GAGAAGCTTTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus sativus cv GSK3-1
EV573821       <-- GAGAAGCTGTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus raphanistrum subsp. landra
FD566206       <-- GAGAAGCTGTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus sativus var. oleiformis
EY921052       <-- GAGAAGCTGTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus raphanistrum subsp. landra
FD984597       <-- GAGAAGCTGTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus raphanistrum subsp. landra
EX901899       <-- GAGAAGCTGTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus sativus cv Early Scarlet Globe
EY927392       <-- GAGAAGCTTTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus sativus var. oleiformis
EV540009       <-- GAGAAGCTGTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531708       <-- GAGAAGCTGTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus raphanistrum subsp. maritimus
FD935513       <-- GAGAAGCTGTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus sativus var. oleiformis
EY912039       <-- GAGAAGCTTTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428751       <-- GAGAAGCTTTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus sativus cv GSK3-1
EV569234       --> ..................................................  Raphanus raphanistrum subsp. landra
EV535920       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD988728       --> ..................................................  Raphanus raphanistrum subsp. landra
EY925608       --> ..................................................  Raphanus raphanistrum subsp. landra
FD939374       --> GAGAAGCTGTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus sativus var. oleiformis
FD541566       --> GAGAAGCTGTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898305       --> GAGAAGCTGTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus sativus cv Early Scarlet Globe
EY916346       --> GAGAAGCTTTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY904762       --> GAGAAGCTGTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559607       --> GAGAAGCTGTGGAGGATGCCATTAGAAGAGAGCTACTGGGAGATGATGAA  Raphanus raphanistrum subsp. landra

               1401   -   1451
UN21274        --> GTCTGGATGTGCTGATATGGTCAACACAGGTGGGCGTGCAGGAGGTTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- GTCTGGATGTGCTGATATGGTCAACACAGGTGGGCGTGCAGGAGGTTCCA
FY443879       <-- GTCTGGATGTGCTGATATGGTCAACACAGGTGGGCGTGCAGGAGGTTCCA
FY433434       <-- GTCTGGATGTGCTGATATGGTCAACACAGGTGGGCGTGCAGGAGGTTCCA
EV573821       <-- GTCTGGATGTGCTGATATGGTCAACACAGGTGGGCGTGCAGGAGGTTCCA
FD566206       <-- GTCTGGATGTGCTGATATGGTCAACACAGGCGGGCGTGCAGGAGGTTCCA
EY921052       <-- GTCTGGATGTGCTGATATGGTCAACACAGGTGGGCGTGCAGGAGGTTCCA
FD984597       <-- GTCTGGATGTGCTGATATGGTCAACACAGGTGGGCGTGCAGGAGGTTCCA
EX901899       <-- GTCTGGATGTGCGGATATGGTTAACACAGGTGGGCGTGCAGGAGGTTCCA
EY927392       <-- GTCTGGATGTGCTGATATGGTCAACACAGGTGGGCGTGCAGGAGGTTCCA
EV540009       <-- GTCTGGATGTGCTGATATGGTCAACACAGGTGGGCGTGCAGGAGGTTCCA
FD531708       <-- GTCTGGATGTGCTGATATGGTCAACACAGGTGGGCGTGCAGGAGGTTCCA
FD935513       <-- GTCTGGATGTGCTGATATGGTCAACACAGGTGGGCGTGCAGGAGGTTCCA
EY912039       <-- GTCTGGATGTGCTGATATGGTCAACACAGGTGGGCGTGCAGGAGGTTCCA
FY428751       <-- GTCTGGATGTGCTGATATGGTCAACACAGGTGGGCGTGCAGGAGGTTCCA
EV569234       --> ..................................................
EV535920       --> ..................................................
FD988728       --> ..................................................
EY925608       --> ..................................................
FD939374       --> GTCTGGATGTGCTGATATGGTCAACACAGGTGGGCGTGCAGGAG-TTCCA
FD541566       --> GTCTGGATGTGCTGATATGGTCAACACAGGTGGGCGTGCAGGAGGTTCCA
EX898305       --> GTCTGGATGTGCGGATATGGTTAACACAGGTGGGCGTGCAGGAGGTTCCA
EY916346       --> GTCTGGATGTGCTGATATGGTCAACACAGGTGGGCGT.............
EY904762       --> GTCTGGATGTGCTGATATGGTCAACACAGGTGGGCGTGCAGGAGGTTCCA
FD559607       --> GTCTGGATGTGCTGATATGGTCAACACAGGTGGGCGTGCAGGAGGTTCCA

               1451   -   1501
UN21274        --> TCACCGCAGCTCTCTTCTTGAAGCAGTTTGTGAGCGAGAAGGTGCAATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- TCACCGCAGCTCTCTTCTTGAAGCAGTTTGTGAGCGAGAAGGTGCAATGA
FY443879       <-- TCACCGCAGCTCTCTTCTTGAAGCAGTTTGTGAGCGAGAAGGTGCAATGG
FY433434       <-- TCACCGCAGCTCTCTTCTTGAAGCAGTTTGTGAGCGAGAAGGTGCAATGG
EV573821       <-- TCACCGCAGCTCTCTTCTTGAAGCAGTTTGTGAGCGAGAAGGTGCAATGG
FD566206       <-- TCACCGCAGCTCTCTTCTTGAAGCAGTTTGTGAGCGAGAAGGTGCAATGG
EY921052       <-- TCACCGCAGCTCTCTTCTTGAAGCAGTTTGTGAGCGATAAGGTGCAATGG
FD984597       <-- TCACCGCAGCTCTCTTCTTGAAGCAGTTTGTGAGCGAGAAGGTGCGATGG
EX901899       <-- TCACCGCAGCTCTTTTCTTGAAGCAGTTTGTGAGCGAGAAGGTGCAATGG
EY927392       <-- TCACCGCAGCTCTCTTCTTGAAGCAGTTTGTGAGCGAGAAGGTGCAATGG
EV540009       <-- TCACCGCAGCTCTCTTCTTGAAGCAGTTTGTGAGCGAGAAGGTGCAATGG
FD531708       <-- TCACCGCAGCTCTCTTCTTGAAGCAGTTTGTGAGCGAGAAGGTGCAATGG
FD935513       <-- TCACCGCAGCTCTCTTCTTGAAGCAGTTTGTGAGCGAGAAGGTGCAATGG
EY912039       <-- TCACCGCAGCTCTTTTCTTGAAGCAGTTTGTGAGCGAGAAGGTGCAATGG
FY428751       <-- TCACCGCAGCTCTCTTCTTGAAGCAGTTTGTGAGCGAGAAGGTGCAATGG
EV569234       --> ..................................................
EV535920       --> ..................................................
FD988728       --> ..................................................
EY925608       --> ..................................................
FD939374       --> TCACCGCAGCTCTCTTCTTGAAGCAGTTTGTGAGCGAGAAG-TGCAATGG
FD541566       --> TCACCGCAGCTCTCTTCTTGAAGCAGTTTGTGAGCGAGAAGGTGCAATGG
EX898305       --> TCACCGCAGCTCTCTTCTTGAAGCAGTTTGTGAGCGAGAAGGTGCAATGG
EY916346       --> ..................................................
EY904762       --> TCACCGCAGCTCTCTTCTTGAAGCAGTTTGTGAGC...............
FD559607       --> TCACCGCAGCTCTCTTCTTGAAGCAGTTTGTGAGCGAGAAGGTGCAATGG

               1501   -   1551
UN21274        --> ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAAAGAAGTCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAAAGAAGTCTGG
FY443879       <-- ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAAAGAAGTCTGG
FY433434       <-- ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAAAGAAGTCTGG
EV573821       <-- ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAAAGAAGTCTGG
FD566206       <-- ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAAAGAAGTCTGG
EY921052       <-- ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAAAGAAGTCTGG
FD984597       <-- ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAAAGAAGTCTGG
EX901899       <-- ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAAAGAAGTCTGG
EY927392       <-- ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAAAGAAGTCTGG
EV540009       <-- ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAAAGAAGTCTGG
FD531708       <-- ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAAAGAAGTCTGG
FD935513       <-- ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAAAGAAGTCTGG
EY912039       <-- ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAAAGAAGTCTGG
FY428751       <-- ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAAAGAAGTCTGG
EV569234       --> ..................................................
EV535920       --> ..................................................
FD988728       --> ..................................................
EY925608       --> ..................................................
FD939374       --> ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAA-G-AGTCTGG
FD541566       --> ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAAAGAAGTCTGG
EX898305       --> ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAAAGAAGTCTGG
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ATGCATATAGACATGGCTGGACCGGTGTGGAACGAGAAAAAGAAGTCTGG

               1551   -   1601
UN21274        --> AACTGGG-TTTGGTGTTGCGACGCTTGTCGAATGGGTGCAGACGAATTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- AACTGGG-TTTGGTGTTGCGACGCTTGTCGAATGGGTGCAGACGAATTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443879       <-- AACTGGG-TTTGGTGTTGCGACGCTTGTCGAATGGGTGCAGACGAATTCT  Raphanus sativus cv GSK3-1
FY433434       <-- AACTGGG-TTTGGTGTTGCGACGCTTGTCGAATGGGTGCAGACGAATTCT  Raphanus sativus cv GSK3-1
EV573821       <-- AACTGGG-TTTGGTGTTGCGACGCTTGTAGAATGGGTGCAGACGAACTCT  Raphanus raphanistrum subsp. landra
FD566206       <-- AACTGGG-TTTGGTGTTGCGACGCTTGTCGAATGGGTGCAGACGAATTCT  Raphanus sativus var. oleiformis
EY921052       <-- AACTGGG-TTTGGTGTTGCGACGCTTGTAGAATGGGTGCAGACGAACTCT  Raphanus raphanistrum subsp. landra
FD984597       <-- AACTGGG-TTTGGTGTTGCGACGCTTGTAGAATGGGTGCAGACGAACTCT  Raphanus raphanistrum subsp. landra
EX901899       <-- AACTGGG-TTTGGTGTTGCGACGCTTGTCCAATGGGTGCAGACGAATTTT  Raphanus sativus cv Early Scarlet Globe
EY927392       <-- AACTGGG-TTTGGTGTTGCGACGCTTGTCGAATGGGTGCAGACGAATTCT  Raphanus sativus var. oleiformis
EV540009       <-- AACTGGG-TTTGGTGTTGCGACGCTTGTAGAATGGGTGCAGACGAATTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531708       <-- AACTGGG-TTTGGTGTTGCGACGCTTGTCGAATGGGTGCAGACGAATTCT  Raphanus raphanistrum subsp. maritimus
FD935513       <-- AACTGGG-TTTGGTGTTGCGACGCTTGTCGAATGGGTGCAGACGAATTTT  Raphanus sativus var. oleiformis
EY912039       <-- AACTGGG-TTTGGTGTTGGGACGCTTGTCGAATGGGTGCAGACGAATTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428751       <-- AACTGGG-TTTGGTGTTGCGACGCTTGTCGAATGGGTGCAGACGAATTCT  Raphanus sativus cv GSK3-1
EV569234       --> ..................................................  Raphanus raphanistrum subsp. landra
EV535920       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD988728       --> ..................................................  Raphanus raphanistrum subsp. landra
EY925608       --> ..................................................  Raphanus raphanistrum subsp. landra
FD939374       --> AACTGGG-TTTGGTGTTGCGACGCTTGTCGA-TGGGTGCAGA........  Raphanus sativus var. oleiformis
FD541566       --> AACTGGG-TTTGGTGTTGCGACGCTTGTAGAATGGGTGCAGAC.......  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898305       --> AACTGGGGTTTGGTGTTGCGACGCTTGTCCAATGGGTGCAGACGAATTCT  Raphanus sativus cv Early Scarlet Globe
EY916346       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY904762       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559607       --> AACTGGG-TTTGGTGTTGCGACGCTTGTAGAATGGG-GCAGACGAACTCT  Raphanus raphanistrum subsp. landra

               1601   -   1651
UN21274        --> TCTTCGTAGAGGATGAGATAAAGTGTTTCGGGTGTCGAAGTGG--TTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- TCTTCGTAGAGGATGAGATAAAGTGTTTCGGGTGTCGAAGTGG--TTGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443879       <-- TCTTCGTAGAGGATGAGATAAAGTGTTTCGGGTGTCGAAGTGG--TTGTT  Raphanus sativus cv GSK3-1
FY433434       <-- TCTTCGTAGAGGATGAGATAAAGTGTTTCGGGTGTCGAAGTGG--TTGTT  Raphanus sativus cv GSK3-1
EV573821       <-- TCTTCGTAAAGGATGAGATAAAGTGTTTCGGGTGTCGAAGTGGAGTTGTT  Raphanus raphanistrum subsp. landra
FD566206       <-- TCTTCGTAGAGGATGAGATAAAGTGTTTCGGGTGTCGAAGTGG--TTGTT  Raphanus sativus var. oleiformis
EY921052       <-- TCTTCGTAAAGGATGAGATAAAGTGTTTCGGGTGTCGAAGTGGGGTTGTT  Raphanus raphanistrum subsp. landra
FD984597       <-- TCTTCGTAAAGGATGAGATAAAGTGCTTCGGGTGTCGAAGTGGGGTTGTT  Raphanus raphanistrum subsp. landra
EX901899       <-- TTTTCGTAGAGGATGAGATAAAGTGTTTCGGGTGTCGAAGTGG--TTGTT  Raphanus sativus cv Early Scarlet Globe
EY927392       <-- TCTTCGTAGAGGATGAGATAAAGTGTTTCGGGTGTCGAAGTGG--TTGTT  Raphanus sativus var. oleiformis
EV540009       <-- TCTTCGTAGAGGATGAGATAAAGTGTTTCGGGTGTCGAAGTGG--TTGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531708       <-- TCTTCGTAGAGGATGAGATAAAGTGTTTCGGGTGTCGAAGTGG--TTGTT  Raphanus raphanistrum subsp. maritimus
FD935513       <-- TCTTCGTAGAGGATGAGATAAAGTGTTTCGGGTGTCGAAGTGG--TTGTT  Raphanus sativus var. oleiformis
EY912039       <-- TTTTCGTAGAGGATGAGATAAAGTGTTTCGGGTGTCGAAGTGG--TTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428751       <-- TCTTCGTAGAGGATGAGATAAAGTGTTTCGGGTGTCGAAGTGG--TTGTT  Raphanus sativus cv GSK3-1
EV569234       --> ..................................................  Raphanus raphanistrum subsp. landra
EV535920       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD988728       --> ..................................................  Raphanus raphanistrum subsp. landra
EY925608       --> ..................................................  Raphanus raphanistrum subsp. landra
FD939374       --> ..................................................  Raphanus sativus var. oleiformis
FD541566       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898305       --> TCTTCGTAGAGGATGAGATAAAGTGTTTCGGGTGTCGAAGTGG--TTGTT  Raphanus sativus cv Early Scarlet Globe
EY916346       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY904762       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559607       --> TCTTCGTAAAGGATGAGATAAAGTGTTTCGGGTGTCGAAGTGGGGTTGTT  Raphanus raphanistrum subsp. landra

               1651   -   1701
UN21274        --> GGTTTTAATAAGGTTGTCAAAAGTTGTTGTGTTTTGGATTGTCTTTTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- GGTTTTAATAAGGTAGTCAAAAGTTGTTGTGCTTTGGATTGTCTTTTACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443879       <-- GGTTTTAATAAGGTTGTCAAAAGTTGTTGTGTTTTGGATTGTCTTTTACT  Raphanus sativus cv GSK3-1
FY433434       <-- GGTTTTAATAAGGTTGTCAAAAGTTGTTGTGTTTTGGATTGTCTTTTACT  Raphanus sativus cv GSK3-1
EV573821       <-- GGTTTTAATAAGGTTGTCAAAAGTTGTTGTGTCTTGGATTGTCTTTTGCT  Raphanus raphanistrum subsp. landra
FD566206       <-- GGTTTTAATAAGGTTGTCAAAAGTTGTTGTGTTTTGTATTGTCTTTTACT  Raphanus sativus var. oleiformis
EY921052       <-- GGTTTTAATAAGGTTGTCAAAAGTTGTTGTGTTTTGGATTGTCTTTTGCT  Raphanus raphanistrum subsp. landra
FD984597       <-- GGTTTTAATAAGGTTGTCAAAAGTTGTTGTGTTTTGGATTGTCTTTTGCT  Raphanus raphanistrum subsp. landra
EX901899       <-- GGTTTTAATAAGGTAGTCAAAAGTTGTTGTGCTTTGGATTGTCTTTTACT  Raphanus sativus cv Early Scarlet Globe
EY927392       <-- GGCTTTAATAAGGTTGTCAAAAGTTGTTGTGTTTTGGATTGTCTTTTACT  Raphanus sativus var. oleiformis
EV540009       <-- GGTTTTAATAAGGTTGTCAAAAGTTGTTGTGCTTTGGATTGTCTTTTACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531708       <-- GGTTTTAATAAGGTTGTCAAAAGTTGTTGTGTTTTGGATTGTCTTTTACT  Raphanus raphanistrum subsp. maritimus
FD935513       <-- GGTTTTAATAAGGTTGTCAAAAGTTGTTGTGTTTTGGATTGTCTTTTACT  Raphanus sativus var. oleiformis
EY912039       <-- GGTTTTAATAAGGTTGTCAAAAGTTGTTGTGTTTTGGATTGTCTTTTACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428751       <-- GGTTTTAATAAGGTTGTCAAAAGTTGTTGTGTTTTGGATTGTCTTTTACT  Raphanus sativus cv GSK3-1
EV569234       --> ..................................................  Raphanus raphanistrum subsp. landra
EV535920       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD988728       --> ..................................................  Raphanus raphanistrum subsp. landra
EY925608       --> ..................................................  Raphanus raphanistrum subsp. landra
FD939374       --> ..................................................  Raphanus sativus var. oleiformis
FD541566       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898305       --> GGTTTTAATAAG-TAGTCAAA-GTTGTTGTGCTTTGGATTGTCTTTTACT  Raphanus sativus cv Early Scarlet Globe
EY916346       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY904762       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559607       --> GGTTTTAA..........................................  Raphanus raphanistrum subsp. landra

               1701   -   1751
UN21274        --> TGTTCCGAACAGTAACATTATCAGATGCTGAATAAAAGAAGTCTTTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540483       <-- TGTTCCGAACAGTAACATTATCAGATGCTGAATAAAAGAAGTCTTTTGAT
FY443879       <-- TGTTCCGAACAGTAACATTATCAGATGCTGAATAAAAGAAGTCTTTgatt
FY433434       <-- TGTTCCGAACAGTAACA.................................
EV573821       <-- TGTTCCGAACAGTAACATTATCAGATGCTGAATAAAAGAAGTCTTTTGAT
FD566206       <-- TGTTCCGAACAGTAACATTATCAGATGCTGAATAAAAGAAGTCTTTTGAc
EY921052       <-- TGTTCCGAACAGTAACATTATCAGATGCTGAATAAAAGAAGTCTTTTGAT
FD984597       <-- TGTTCCGAACAGTAACATTATCAGATGCTGAATAAAAGAAGTCTTTTGAc
EX901899       <-- TGTTCCGAACAGTAACATTATCAGATGCGGAATAAAAGAAGTCTTTTG..
EY927392       <-- TGTTCCGAACAGTAACATTATCAGATGCTGAATAAAAGAAGTCTTTTGt.
EV540009       <-- TGTTCCGAACAGTAACATTATCAGATGCTGAATAAAATAAGcc.......
FD531708       <-- TGTTCCGAACAGTAACATTATCAGATGCTGAATAAAAGAAGTCTTTTGAT
FD935513       <-- TGTTCCGAACAGTAACATTATCAGATGCTGAATAAAAGAAGTCTTTTGAc
EY912039       <-- TGTTCCGAACAGTAACATTATCAGATGCTGAATAAAAGAAGTCTTTTGAT
FY428751       <-- TGTTCCGAACAGTAACATTATCAGATGCTGAATAAAAGAAGTCTTTTGAT
EV569234       --> ..................................................
EV535920       --> ..................................................
FD988728       --> ..................................................
EY925608       --> ..................................................
FD939374       --> ..................................................
FD541566       --> ..................................................
EX898305       --> TGTTC-G-ACAGT-ACATTATCAGATGC-GAATAAA-G-AGTCTTTTGA.
EY916346       --> ..................................................
EY904762       --> ..................................................
FD559607       --> ..................................................

               1751   -   1801
UN21274        --> C.
                   ~~
EV540483       <-- tt
FY443879       <-- ..
FY433434       <-- ..
EV573821       <-- C.
FD566206       <-- t.
EY921052       <-- tt
FD984597       <-- cg
EX901899       <-- ..
EY927392       <-- ..
EV540009       <-- ..
FD531708       <-- C.
FD935513       <-- g.
EY912039       <-- t.
FY428751       <-- ..
EV569234       --> ..
EV535920       --> ..
FD988728       --> ..
EY925608       --> ..
FD939374       --> ..
FD541566       --> ..
EX898305       --> ..
EY916346       --> ..
EY904762       --> ..
FD559607       --> ..