0      -     50
UN21358        --> .GGGATCTCAGCGCTTTCACCATCATCTCGAGATTACTTCAGGACTTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- ..................................................
EY919315       <-- ..................................................
EX752919       <-- ..................................................
FD985044       <-- ..................................................
FD985439       <-- ..................................................
FD544588       <-- ..................................................
EY920612       <-- ..................................................
EX762163       --> .GGGATCTCAGCGCTT-CACCATCATCTCGAGATTACTTCAGGACTTTAG
FD989236       --> .GGGATCTCAGCGCTTTCACCATCATCTCGAGATTACTTCAGGACTTTAG
FD989685       --> .GGGATCTCAGCGCTTTCACCATCATCTCGAGATTACTTCAGGACTTTAG
EV538832       --> ..GGATCTCAGCGCTTTCACCATCATCTCGAGATTACTTCAGGACTTTAG
EX748444       --> ..GGATCTCAGCGCTTTCACCATCATCTCGAGATTACTTCAGGACTCTAG
EY898294       --> ..GGATCTCAGCGCTTTCACCATCATCTCGAGATTACTTCAGGACTCTAG
EY923528       --> ..GGATCTCAGCGCTTTCACCATCATCTCGAGATTACTTCAGGACTTTAG
EY925051       --> ..GGATCTCAGCGCTTTCACCATCATCTCGAGATTACTTCAGGACTTTAG
EX749150       --> gggcATCTCAGCGCTTTCACCATCATCTCGAGATTACTTCAGGACTCTAG
FD548393       --> .ggcATCTCAGCGCTT-CACCATCATCTCGAGATTACTTCAGGACTTTAG
EY907765       --> .....gggCAGCGCTTTCACCATCATCTCGAGATTACTTCAGGACTTTAG
EX758200       --> ..................................................

               50     -    100
UN21358        --> GGTTTCAGTGATCCGCAGCTGCACACATCAAACATGGCGACTCAAATTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- ...................................GGCGACTCAAATTAG  Raphanus raphanistrum subsp. landra
EY919315       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX752919       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD985044       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985439       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD544588       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920612       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX762163       --> GGTTTCAGTGATCCACAGCTGCACACATCAAACATGGCGACTCAAATGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989236       --> GGTTTCAGTGATCCGCAGCTGCACACATCAAACATGGCGACTCAAATTAG  Raphanus raphanistrum subsp. landra
FD989685       --> GGTTTCAGTGATCCGCAGCTGCACACATCAAACATGGCGACTCAAATTAG  Raphanus raphanistrum subsp. landra
EV538832       --> GGTTTCAGTGATCCGCAGCTGCACACATCAAACATGGCGACTCAAATGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748444       --> GGTTTCAGTGATCCGCACCTGCACACATCAAACATGGCGACTCAAATGAG  Raphanus raphanistrum subsp. maritimus
EY898294       --> GGTTTCAGTGATCCGCACCTGCACACATCAAACATGGCGACTCAAATGAG  Raphanus raphanistrum subsp. maritimus
EY923528       --> GGTTTCAGTGATCCGCAGCTGCACACATCAAACATGGCGACTCAAATTAG  Raphanus raphanistrum subsp. landra
EY925051       --> GGTTTCAGTGATCCGCAGCTGCACACATCAAACATGGCGACTCAAATTAG  Raphanus raphanistrum subsp. landra
EX749150       --> GGTTTCAGTGATCCGCACCTGCACACATCAAACATGGCGACTCAAATGAG  Raphanus raphanistrum subsp. maritimus
FD548393       --> GGTTTCAGTGATCCGCAGCTGCACACATCAAACATGGCGACTCAAATGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907765       --> GGTTTCAGCGATCCACAGCTGCACACATCAAACATGGCGACTCAAATTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758200       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               100    -    150
UN21358        --> CAAGAAGAGAAAGTTTGTAGCTGACGGTGTGTTCTACGCCGAGTTGAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- CAAGAAGAGAAAGTTTGTAGCTGACGGTGTGTTCTACGCCGAGTTGAACG
EY919315       <-- ..................................................
EX752919       <-- ..................................................
FD985044       <-- ..................................................
FD985439       <-- ..................................................
FD544588       <-- ..................................................
EY920612       <-- ..................................................
EX762163       --> CAAGAAGATAAAGTTTGTAGCTGACGGTGTGTTCTACGCCGAGTTGAACG
FD989236       --> CAAGAAGAGAAAGTTTGTAGCTGACGGTGTGTTCTACGCCGAGTTGAACG
FD989685       --> CAAGAAGAGAAAGTTTGTAGCTGACGGTGTGTTCTACGCCGAGTTGAACG
EV538832       --> CAAGAAGAGAAAGTTTGTAGCTGACGGCGTGCTCTACGCCGAGTTGAACG
EX748444       --> CAAGAAGAGAAAGTTTGTAGCTGACGGTGTGTTCTACGCCGAGTTGAACG
EY898294       --> CAAGAAGAGAAAGTTTGTAGCTGACGGTGTGTTCTACGCCGAGTTGAACG
EY923528       --> CAAGAAGAGAAAGTTTGTAGCTGACGGTGTGTTCTACGCCGAGTTGAACG
EY925051       --> CAAGAAGAGAAAGTTTGTAGCTGACGGTGTGTTCTACGCCGAGTTGAACG
EX749150       --> CAAGAAGAGAAAGTTTGTAGCTGACGGTGTGTTCTACGCCGAGTTGAACG
FD548393       --> CAAGAAGAGAAAGTTTGTAGCTGACGGTGTGTTCTACGCCGAGTTGAACG
EY907765       --> CAAGAAGAGAAAGTTTGTAGCTGACGGTGTGTTCTACGCCGAGTTGAACG
EX758200       --> ..................................................

               150    -    200
UN21358        --> AGGTTCTAACCAGAGAGCTTGCTGAAGATGGTTACTCTGGTGTAGAGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- AGGTTCTAACCAGAGAGCTTGCTGAAGATGGTTACTCTGGTGTAGAGGTT  Raphanus raphanistrum subsp. landra
EY919315       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX752919       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD985044       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985439       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD544588       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920612       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX762163       --> AGGTTCTAACCAGAGAGCTTGCGGAAGATGGTTACTCTGGTGTAGAGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989236       --> AGGTTCTAACCAGAGAGCTTGCTGAAGATGGTTACTCTGGTGTAGAGGTT  Raphanus raphanistrum subsp. landra
FD989685       --> AGGTTCTAACCAGAGAGCTTGCTGAAGATGGTTACTCTGGTGTAGAGGTT  Raphanus raphanistrum subsp. landra
EV538832       --> AGGTTTTAACCAGAGAGCTTGCTGAAGATGGTTACTCTGGTGTGGAGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748444       --> AGGTTCTAACCAGAGAGCTTGCGGAAGATGGTTACTCTGGTGTGGAGGTT  Raphanus raphanistrum subsp. maritimus
EY898294       --> AGGTTCTAACCAGAGAGCTTGCGGAAGATGGTTACTCTGGTGTGGAGGTT  Raphanus raphanistrum subsp. maritimus
EY923528       --> AGGTTCTAACCAGAGAGCTTGCTGAAGATGGTT--TCTGGTGTAGAGGTT  Raphanus raphanistrum subsp. landra
EY925051       --> AGGTTCTAACCAGAGAGCTTGCTGAAGATGGTT--TCTGGTGTAGAGGTT  Raphanus raphanistrum subsp. landra
EX749150       --> AGGTTCTAACCAGAGAGCTTGCGGAAGATGGTTACTCTGGTGTGGAGGTT  Raphanus raphanistrum subsp. maritimus
FD548393       --> AGGTTCTAACCAGAGAGCTTGCGGAAGATGGTTACTCTGGTGTAGAGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907765       --> AGGTTTTAACCAGAGAGCTTGCTGAAGATGGTTACTCTGGTGTGGAGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758200       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               200    -    250
UN21358        --> AGGGTTACTCCAATGAGGACTGAGATTATCATCAGAGCCACACGTACTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- AGGGTTACTCCAATGAGGACTGAGATTATCATTAGAGCCACACGTACTCA  Raphanus raphanistrum subsp. landra
EY919315       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX752919       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD985044       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985439       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD544588       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920612       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX762163       --> AGGGTTACTCCAATGAGGACTGAGATTATCATCAGAGCCACACGTACTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989236       --> TGGGTTACTCCAATGAGGACTGAGATTATCATTAGAGCCACACGTACTCA  Raphanus raphanistrum subsp. landra
FD989685       --> TGGGTTACTCCAATGAGGACTGAGATTATCATTAGAGCCACACGTACTCA  Raphanus raphanistrum subsp. landra
EV538832       --> AGGGTTACTCCAATGAGGACTGAGATTATCATCAGAGCCACACGTACTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748444       --> AGGGTTACTCCAATGAGGACTGAGATTATCATCAGAGCCACACGTACTCA  Raphanus raphanistrum subsp. maritimus
EY898294       --> AGGGTTACTCCAATGAGGACTGAGATTATCATCAGAGCCACACGTACTCA  Raphanus raphanistrum subsp. maritimus
EY923528       --> AGGGTTACTCCAATGAGGACTGAGATTATCATTAGAGCCACACGTACTCA  Raphanus raphanistrum subsp. landra
EY925051       --> AGGGTTACTCCAATGAGGACTGAGATTATCATTAGAGCCACACGTACTCA  Raphanus raphanistrum subsp. landra
EX749150       --> AGGGTTACTCCAATGAGGACTGAGATTATCATCAGAGCCACACGTACTCA  Raphanus raphanistrum subsp. maritimus
FD548393       --> AGGGTTACTCCAATGAGGACTGAGATTATCATCAGAGCCACACGTACTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907765       --> AGGGTTACTCCAATGAGGACTGAGATTATCATCAGGGCCACACGTACTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758200       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               250    -    300
UN21358        --> AAATGTTCTCGGTGAGAAGGGGAGGAGGATCAGAGAGTTGACATCTCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- AAATGTTCTCGGTGAGAAGGGAAGGAGGATCAGAGAGTTGACATCTCTTG  Raphanus raphanistrum subsp. landra
EY919315       <-- ....GTTCTCGGTGAGAAGGGAAGGAGGATCAGAGAGTTGACATCTCTTG  Raphanus raphanistrum subsp. landra
EX752919       <-- .............GAGAAGGGGAGGAGGATCAGAGAGTTGACATCTCTTG  Raphanus raphanistrum subsp. maritimus
FD985044       <-- .............................TCAGAGAGTTGACATCTCTTG  Raphanus raphanistrum subsp. landra
FD985439       <-- .............................TCAGAGAGTTGACATCTCTTG  Raphanus raphanistrum subsp. landra
FD544588       <-- .................................................t  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920612       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX762163       --> AAATGTTCTCGGTGAGAAGGGGAGGAGGATCAGAGAGTTGACATCTCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989236       --> AAATGTTCTCGGTGAGAAGGGAAGGAGGATCAGAGAGTTGACATCTCTTG  Raphanus raphanistrum subsp. landra
FD989685       --> AAATGTTCTCGGTGAGAAGGGAAGGAGGATCAGAGAGTTGACATCTCTTG  Raphanus raphanistrum subsp. landra
EV538832       --> AAATGTTCTCGGTGAGAAGGGAAGGAGAATCAGAGAGTTGACATCTCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748444       --> AAATGTTCTCGGTGAGGAGGGGAGGAGGATCAGAGAGTTGACATCTCTTG  Raphanus raphanistrum subsp. maritimus
EY898294       --> AAATGTTCTCGGTGAGAAGGGGAGGAGGATCAGAGAGTTGACATCTCTTG  Raphanus raphanistrum subsp. maritimus
EY923528       --> AAATGTTCTCGGTGAGAAGGGAAGGAGGATCAGAGAGTTGACATCTCTTG  Raphanus raphanistrum subsp. landra
EY925051       --> AAATGTTCTCGGTGAGAAGGGAAGGAGGATCAGAGAGTTGACATCTCTTG  Raphanus raphanistrum subsp. landra
EX749150       --> AAATGTTCTCGGTGAGAAGGGGAGGAGGATCAGAGAGTTGACATCTCTTG  Raphanus raphanistrum subsp. maritimus
FD548393       --> AAATGTTCTCGGTGAGAAGGGGAGGAGGATCAGAGAGTTGACATCCCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907765       --> AAATGTTCTCGGTGAGAAGGGGAGGAGGATCAGAGAGTTGACAGCTCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758200       --> ..................................GAGTTGACATCTCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)

               300    -    350
UN21358        --> TTCAGAAGAGATTCAGGTTTCCTCAAGACAGTGTTGAGCTTTACGCTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- TCCAGAAGAGATTCAGGTTTCCTCAAGACAGTGTTGAGCTTTACGCTGAG  Raphanus raphanistrum subsp. landra
EY919315       <-- TCCAGAAGAGATTCAGGTTTCCTCAAGACAGTGTTGAGCTT-ACGCTGAG  Raphanus raphanistrum subsp. landra
EX752919       <-- TTCAGAAGAGATTCAGGTTTCCTCAAGACAGTGTTGAGCTTTACGCTGAG  Raphanus raphanistrum subsp. maritimus
FD985044       <-- TCCAGAAGAGATTCAGGTTTCCTCAAGACAGTGTTTAGCTTTACGCTGAG  Raphanus raphanistrum subsp. landra
FD985439       <-- TCCAGAAGAGATTCAGGTTTCCTCAAGACAGTGTTTAGCTTTACGCTGAG  Raphanus raphanistrum subsp. landra
FD544588       <-- gttAGAAGAGATTCAGGTTTCCTCAAGACAGTGTTGAGCTTTACGCTGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920612       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX762163       --> TTCAGAAGAGATTCAGGTTTCCTCAAGACAGTGTTGAGCTTTACGCTGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989236       --> TCCAGAAGAGATTCAGGTTTCCTCAAGACAGTGTTTAGCTTTACGCTGAG  Raphanus raphanistrum subsp. landra
FD989685       --> TCCAGAAGAGATTCAGGTTTCCTCAAGACAGTGTTTAGCTTTACGCTGAG  Raphanus raphanistrum subsp. landra
EV538832       --> TTCAGAAGAGATTCAGGTTTCCTCAAGACAGTGTTGAGCTTTACGCTGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748444       --> TTCAGAAGAGATTCAGGTTTCCTCAAGACAGTGTTGAGCTTTACGCTGAG  Raphanus raphanistrum subsp. maritimus
EY898294       --> TTCAGAAGAGATTCAGGTTTCCTCAAGACAGTGTTGAGCTTTACGCTGAG  Raphanus raphanistrum subsp. maritimus
EY923528       --> TCCAGAAGAGATTCAGGTTTCCTCAAGACAGTGTTGAGCTT-ACGCTGAG  Raphanus raphanistrum subsp. landra
EY925051       --> TCCAGAAGAGATTCAGGTTTCCTCAAGACAGTGTTGAGCTT-ACGCTGAG  Raphanus raphanistrum subsp. landra
EX749150       --> TTCAGAAGAGATTCAGGTTTCCTCAAGACAGTGTTGAGCTTTACGCTGAG  Raphanus raphanistrum subsp. maritimus
FD548393       --> TT-AGAAGAGATTCAGGTTTCCTCAAGACAGTGTTGAGCTTTACGCTGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907765       --> TTCAGAAGAGATTCAGGTTTCCTCAAGACAGTGTTGAGCTTTACGCTGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758200       --> TTCAGAAGAGATTCAGGTTTCCTCAAGACAGTGTTGAGCTTTACGCTGAG  Raphanus raphanistrum subsp. raphanistrum (MS)

               350    -    400
UN21358        --> AAGGTTACCAACAGAGGTCTCTGCGCTATTGCTCAGGCTGAGTCTCTCC-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- AAGGTTACCAACAGAGGTCTCTGCGCTATTGCTCAGGCTGAGTCTCTCC-  Raphanus raphanistrum subsp. landra
EY919315       <-- AAGGTTACCAACAGAGGTCTCTGCGCTATTGCTCAGGCTGAGTCTCTCC-  Raphanus raphanistrum subsp. landra
EX752919       <-- AAGGTTACCAACAGGGGTCTCTGCGCTATTGCTCAGGCTGAGTCTCTTC-  Raphanus raphanistrum subsp. maritimus
FD985044       <-- AAGGTTACCAACAGAGGTCTCTGCGCTATTGCTCAGGCTGAGTCTCTCC-  Raphanus raphanistrum subsp. landra
FD985439       <-- AAGGTTACCAACAGAGGTCTCTGCGCTATTGCTCAGGCTGAGTCTCTCC-  Raphanus raphanistrum subsp. landra
FD544588       <-- AAGGTGACCAACAGAGGTCTCTGCGCTATTGCACAGGCTGAGTCTCTCC-  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920612       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX762163       --> AAGGTGACCAACAGAGGTCTCTGCGCTATTGCACAGGCTGAGTCTCTCC-  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989236       --> AAGGTTACCAACAGAGGTCTCTGCGCTATTGCTCAGGCTGAGTCTCTCC-  Raphanus raphanistrum subsp. landra
FD989685       --> AAGGTTACCAACAGAGGTCTCTGCGCTATTGCTCAGGCTGAGTCTCTCC-  Raphanus raphanistrum subsp. landra
EV538832       --> AAGGTGACCAACAGAGGTCTCTGCGCTATTGCTCAGGCTGAGTCTCTTC-  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748444       --> AAGGTTACCAACAGGGGTCTCTGCGCTATTGCTCAGGCTGAGTCTCTTC-  Raphanus raphanistrum subsp. maritimus
EY898294       --> AAGGTTACCAACAGGGGTCTCTGCGCTATTGCTCAGGCTGAGTCTCTTC-  Raphanus raphanistrum subsp. maritimus
EY923528       --> AAGGTTACCAACAGAGGTCTCTGCGCTATTGCTCAGGCTGAGTCTCTCC-  Raphanus raphanistrum subsp. landra
EY925051       --> AAGGTTACCAACAGAGGTCTCTGCGCTATTGCTCAGGCTGAGTCTCTCC-  Raphanus raphanistrum subsp. landra
EX749150       --> AAGGTTACCAACAGGGGTCTCTGCGCTATTGCTCAGGCTGAGTCTCTTC-  Raphanus raphanistrum subsp. maritimus
FD548393       --> AAGGTGACCAACAGAGGTCTCTGCGCTATTGCACAGGCTGAGTCTCTCC-  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907765       --> AAGGTTACCAACAGGGGTCTCTGCGCTATTGCTCAGGCTGAGTCTCTCC-  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758200       --> AAGGTTACCAACAGGGGTCTCTGCGCTATTGCTCAGACTGAGTCTCTCCC  Raphanus raphanistrum subsp. raphanistrum (MS)

               400    -    450
UN21358        --> GTTACAAGCTCCTCGGTGGACTTGCTGTTCGCAGGGCTTGCTATGGTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- GTTACAAGCTGCTCGGTGGACTTGCTGTTCGCAGGGCTTGCTATGGTGTC  Raphanus raphanistrum subsp. landra
EY919315       <-- GTTACAAGCTGCTCGGTGGACTTGCTGTTCGCAGGGCTTGCTATGGTGTC  Raphanus raphanistrum subsp. landra
EX752919       <-- GTTACAAGCTCCTCGGTGGACTTGCTGTTCGCAGGGCTTGCTATGGTGTC  Raphanus raphanistrum subsp. maritimus
FD985044       <-- GTTACAAGCTGCTCGGTGGACTTGCTGTTCGCAGGGCTTGCTATGGTGTC  Raphanus raphanistrum subsp. landra
FD985439       <-- GTTACAAGCTGCTCGGTGGACTTGCTGTTCGCAGGGCTTGCTATGGTGTC  Raphanus raphanistrum subsp. landra
FD544588       <-- GTTACAAACTCCTCGGTGGACTTGCCGTTCGCAGGGCTTGCTATGGTGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920612       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX762163       --> GTTACAAACTCCTCGGTGGACTTGCCGTTCGCAGGGCTTGCTATGGTGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989236       --> GTTACAAGCTGCTCGGTGGACTTGCTGTTCGCAGGGCTTGCTATGGTGTC  Raphanus raphanistrum subsp. landra
FD989685       --> GTTACAAGCTGCTCGGTGGACTTGCTGTTCGCAGGGCTTGCTATGGTGTC  Raphanus raphanistrum subsp. landra
EV538832       --> GTTACAAGCTCCTCGGTGGACTTGCTGTTCGCAGGGCTTGCTATGGTGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748444       --> GTTACAAGCTCCTCGGTGGACTTGCTGTTCGCAGGGCTTGCTATGGTGTC  Raphanus raphanistrum subsp. maritimus
EY898294       --> GTTACAAGCTCCTCGGTGGACTTGCTGTTCGCAGGGCTTGCTATGGTGTC  Raphanus raphanistrum subsp. maritimus
EY923528       --> GTTACAAGCTGCTCGGTGGACTTGCTGTTCGCAGGGCTTGCTATGGTGTC  Raphanus raphanistrum subsp. landra
EY925051       --> GTTACAAGCTGCTCGGTGGACTTGCTGTTCGCAGGGCTTGCTATGGTGTC  Raphanus raphanistrum subsp. landra
EX749150       --> GTTACAAGCTCCTCGGTGGACTTGCTGTTCGCAGGGCTTGCTATGGTGTC  Raphanus raphanistrum subsp. maritimus
FD548393       --> GTTACAAACTCCTCGGTGGACTTGCCGTTCGCAGGGCTTGCTATGGTGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907765       --> GTTACAAGCTCCTCGGTGGACTTGCTGTTCGCAGGGCTTGCTATGGTGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758200       --> GTTACAAGCTCCTCGGTGGACTTGCTGTTCGCAGGGCTTGCTATGGTGTC  Raphanus raphanistrum subsp. raphanistrum (MS)

               450    -    500
UN21358        --> TTGAGATTCGTCATGGAAAGTGGTGCTAAAGGATGTGAGGTGATTGTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- TTGAGATTCGTCATGGAAAGTGGTGCTAAAGGATGTGAGGTGATTGTGAG  Raphanus raphanistrum subsp. landra
EY919315       <-- TTGAGATTCGTCATGGAAAGTGGTGCTAAAGGATGTGAGGTGATTGTGAG  Raphanus raphanistrum subsp. landra
EX752919       <-- TTGAGATTCGTCATGGAAAGTGGTGCTAAAGGATGTGAGGTCATTGTGAG  Raphanus raphanistrum subsp. maritimus
FD985044       <-- TTGAGATTCGTCATGGAAAGTGGTGCTAAAGGATGTGAGGTGATTGTGAG  Raphanus raphanistrum subsp. landra
FD985439       <-- TTGAGATTCGTCATGGAAAGTGGTGCTAAAGGATGTGAGGTGATTGTGAG  Raphanus raphanistrum subsp. landra
FD544588       <-- TTGAGATTCGTCATGGAAAGTGGTGCTAAAGGATGTGAGGTCATTGTGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920612       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX762163       --> TTGAGATTCGTCATGGAAAGTGGTGCTAAAGGATGTGAGGTCATTGTGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989236       --> TTGAGATTCGTCATGGAAAGTGGTGCTAAAGGATGTGAGGTGATTGTGAG  Raphanus raphanistrum subsp. landra
FD989685       --> TTGAGATTCGTCATGGAAAGTGGTGCTAAAGGATGTGAGGTGATTGTGAG  Raphanus raphanistrum subsp. landra
EV538832       --> TTGAGATTCGTCATGGAAAGTGGTGCTAAAGGATGTGAGGTGATTGTGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748444       --> TTGAGATTCGTCATGGAAAGTGGTGCTAAAGGATGTGAGGTCATTGTGAG  Raphanus raphanistrum subsp. maritimus
EY898294       --> TTGAGATTCGTCATGGAAAGTGGTGCTAAAGGATGTGAGGTCATTGTGAG  Raphanus raphanistrum subsp. maritimus
EY923528       --> TTGAGATTCGTCATGGAAAGTGGTGCTAAAGGATGTGAGGTGATTGTGAG  Raphanus raphanistrum subsp. landra
EY925051       --> TTGAGATTCGTCATGGAAAGTGGTGCTAAAGGATGTGAGGTGATTGTGAG  Raphanus raphanistrum subsp. landra
EX749150       --> TTGAGATTCGTCATGGAAAGTGGTGCTAAAGGATGTGAGGTCATTGTGAG  Raphanus raphanistrum subsp. maritimus
FD548393       --> TTGAGATTCGTCATGGAAAGTGGTGCTAAAGGATGTGAGGTCATTGTGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907765       --> TTGAGATTCGTCATGGAAAGTGGTGCTAAGGGATGTGAGGTGATTGTGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758200       --> TTGAGATTCGTCATGGAAAGTGGTGCTAAGGGATGTGAGGTGATTGTGAG  Raphanus raphanistrum subsp. raphanistrum (MS)

               500    -    550
UN21358        --> TGGAAAGCTTCGTGCAGCACGTGCCAAGTCCATGAAATTCAAGGACGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- TGGAAAGCTTCGTGCAGCACGTGCCAAGTTCATGAAATTCAAGGACGGGT  Raphanus raphanistrum subsp. landra
EY919315       <-- TGGAAAGCTTCGTGCAGCACGTGCCAAGTCCATGAAATTCAAGGACGGGT  Raphanus raphanistrum subsp. landra
EX752919       <-- TGGAAAGCTTCGTGCAGCACGTGCCTAGTCCATGAAATTCAAGGACGGTT  Raphanus raphanistrum subsp. maritimus
FD985044       <-- TGGAAAGCTTCGTGCAGCACGTGCCAAGTCCATGAAATTCAAGGACGGGT  Raphanus raphanistrum subsp. landra
FD985439       <-- TGGAAAGCTTCGTGCAGCACGTGCCAAGTCCATGAAATTCAAGGACGGGT  Raphanus raphanistrum subsp. landra
FD544588       <-- TGGAAAGCTTCGTGCAGCACGTGCCAAGTCCATGAAATTCAAGGACGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920612       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX762163       --> TGGAAAGCTTCGTGCAGCACGTGCCAAGTCCATGAAATTCAAGGACGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989236       --> TGGAAAGCTTCGTGCAGCACGTGCCAAGTCCATGAAATTCAAGGACGGGT  Raphanus raphanistrum subsp. landra
FD989685       --> TGGAAAGCTTCGTGCAGCACGTGCCAAGTCCATGAAATTCAAGGACGGGT  Raphanus raphanistrum subsp. landra
EV538832       --> TGGAAAGCTTCGTGCAGCACGTGCCAAGTCCATGAAATTCAAGGACGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748444       --> TGGAAAGCTTCTTGCAGCACGTGCCAAGTCCATGAAATTCAAGGACGGTT  Raphanus raphanistrum subsp. maritimus
EY898294       --> TGGAAAGCTTCGTGCAGCACGTGCCAAGTCCATGAAATTCAAGGACGGTT  Raphanus raphanistrum subsp. maritimus
EY923528       --> TGGAAAGCTTCGTGCAGCACGTGCCAAGTCCATGAAATTCAAGGACGGGT  Raphanus raphanistrum subsp. landra
EY925051       --> TGGAAAGCTTCGTGCAGCACGTGCCAAGTCCATGAAATTCAAGGACGGGT  Raphanus raphanistrum subsp. landra
EX749150       --> TGGAAAGCTTCGTGCAGCACGTGCCTAGTCCATGAAATTCAAGGACGGTT  Raphanus raphanistrum subsp. maritimus
FD548393       --> TGGAAAGCTTCGTGCAGCACGTGCCAAGTCCATGAAATTCAAGGACGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907765       --> TGGAAAGCTGCGTGCAGCACGTGCCAAGTCCATGAAATTC..........  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758200       --> TGGAAAGCTGCGTGCAGCACGTGCCAAGTCCATGAAATTCAAGGACGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)

               550    -    600
UN21358        --> ACATGGTTTCCTCTGGTCAGCCAACCAAGGATTACATCGACTCTGCTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- ACATGGTTTCCTCTGGTCAGCCAACCAAGGATTGCATCGACTCTGCTGTC  Raphanus raphanistrum subsp. landra
EY919315       <-- ACATGGTTTCCTCTGGTCAGCCAACCAAGGATTACATCGACTTTGCTGTC  Raphanus raphanistrum subsp. landra
EX752919       <-- ACATGGTTTTTTCTGGTCAGCCAACCAAGGATTACATCGACTCTGCTGTC  Raphanus raphanistrum subsp. maritimus
FD985044       <-- ACATGGTTTCCTCTGGTCAGCCAACCAAGGATTACATCGACTTTGCTGTC  Raphanus raphanistrum subsp. landra
FD985439       <-- ACATGGTTTCCTCTGGTCAGCCAACCAAGGATTACATCGACTCTGCTGTC  Raphanus raphanistrum subsp. landra
FD544588       <-- ACATGGTTTCGTCTGGTCAGCCAACCAAGGATTACATCGACTCTGCTGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920612       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX762163       --> ACATGGTTTCGTCTGGTCAGCCAACCAAGGATTACATCGACTCTGCTGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989236       --> ACATGGTTTCCTCTGGTCAGCCAACCAAGGATTACATCGACTCTGCTGTC  Raphanus raphanistrum subsp. landra
FD989685       --> ACATGGTTTCCTCTGGTCAGCCAACCAAGGATTACATCGACTCTGCTGTC  Raphanus raphanistrum subsp. landra
EV538832       --> ACATGGTTTCCTCTGGTCAACCTACCAAGGACTACATCGACTCTGCTGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748444       --> ACATGGTTTCTTCTGGTCAGCCAACCAAGGATTACATCGACTCTGCTGTC  Raphanus raphanistrum subsp. maritimus
EY898294       --> ACATGGTTTCTTCTGGTCAGCCAACCAAGGATTACATCGACTCTGCTGTC  Raphanus raphanistrum subsp. maritimus
EY923528       --> ACATGGTTTCCTCTGGTCAGCCAACCAAGGATTACATCGACTCTGCTGTC  Raphanus raphanistrum subsp. landra
EY925051       --> ACATGGTTTCCTCTGGTCAGCCAACCAAGGATTACATCGACTCTGCTGTC  Raphanus raphanistrum subsp. landra
EX749150       --> ACATGGTTTCTTCTGGTCAGCCAACCAAGGATTACATCGACTCTGCTGTC  Raphanus raphanistrum subsp. maritimus
FD548393       --> ACATGGTTTCGTCTGGTCAGCCAACCAAGGATTACATCGACTCTGCTGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907765       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758200       --> ACATGGTTTCCTCTGGTCAGCCAACCAAGGATTACATCGACTCTGCTGTC  Raphanus raphanistrum subsp. raphanistrum (MS)

               600    -    650
UN21358        --> AGACATGTTCTGCTTAGACAGGGTGTTCTCGGAATCAAGGTGAAGGTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- AGACATGTTCTGCTTAGACAGGGTGTTCTCGGAATCAAGGTGAAGGTCAT
EY919315       <-- AGACATGTTCTGCTTAGACAGGGTGTTCTCGGAATCAAGGTGAAGGTCAT
EX752919       <-- AGACATGTTCTGCTTAGACAGGGTGTTTTCGGAATCAAGGTGAAGGTCAT
FD985044       <-- AGACATGTTCTGCTTAGACAGGGTGTTTTCGGAATCAAGGTGAAGGTCAT
FD985439       <-- AGACATGTTCTGCTTAGACAGGGTGTTTTCGGAATCAAGGTGAAGGTCAT
FD544588       <-- AGACATGTTCTGCTTAGACAGGGTGTTCTCGGAATCAGGGTGAAGGTCAT
EY920612       <-- ..................................................
EX762163       --> AGACATGTTCTGCTTAGACAGGGTGTTCTCGG..................
FD989236       --> AGACATGTTCTGCTTAGACAGGGTGTTCTCGGAATCAAGGTGAAGGTCAT
FD989685       --> AGACATGTTCTGCTTAGACAGGGTGTTCTCGGAATCAAAGTGAAGGTCAT
EV538832       --> AGACATGTTCTGCTTAGACAGGGTGTTCTCGGAATCAAGGTGAAGGTCAT
EX748444       --> AGACATGTTCTGCTTAGACAGGGTGTTCTCGGA.................
EY898294       --> AGACATGTTCTGCTTAGACAGGGTGTTCTCGGAATCAAGGTG........
EY923528       --> AGACATGTTCTGCTTAGACAGGGTGTTCTCGGAATCAAAGTGAAAGTCAT
EY925051       --> AGACATGTTCTGCTTAGACAGGGTGTTC......................
EX749150       --> AGACATGTTCTGCTTAGACAGGGTGTTCTCGGAAT...............
FD548393       --> AGACATGTTCTGCTTAGACAGGGTGTTCTCGGAATCAGGGT.........
EY907765       --> ..................................................
EX758200       --> AGACATGTTCTGCTTAGACAGGGTGTTCTCGGAtcaa.............

               650    -    700
UN21358        --> GCTTGACTGGGACCCTAA-GGGAATAAATGGACCAAAGACACCATTGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- GCTTGACTGGGACCCTAA-GGGAATAAATGGACCAAAGACACCATTGCCT
EY919315       <-- GCTTGACTGGGACCCTAA-GGGAATAAATGGACCAAAGACACCATTGCCT
EX752919       <-- GCTTGACTGGGACCCTAA-GGGAATAAATGGACCAAAAACACCATTGCCT
FD985044       <-- GCTTGACTGGGACCCTAA-GGGAATAAATGGACCAAAGACACCATTGCCT
FD985439       <-- GCTTGACTGGGACCCTAA-GGGAATAAATGGACCAAAGACACCATTGCCT
FD544588       <-- GCTTGACTGGGACCCTAA-GGGAATAAATGGACCAAAGACACCATTGCCT
EY920612       <-- ..................................................
EX762163       --> ..................................................
FD989236       --> GCTTGACTGGGACCCTAA-GGGA-TAAATGGACCAAAGACAC-ATTGCCT
FD989685       --> GCTTGACTGGGACCC...................................
EV538832       --> GCTTGACTGGGACCCTAA-GGGAATAAATGGACCAAAGACACCATTGCCT
EX748444       --> ..................................................
EY898294       --> ..................................................
EY923528       --> GCTTGACTGGGACCCTAAAGGGAATAAATGGACCAAAGACACCATTGCCT
EY925051       --> ..................................................
EX749150       --> ..................................................
FD548393       --> ..................................................
EY907765       --> ..................................................
EX758200       --> ..................................................

               700    -    750
UN21358        --> GATGTTGTGATCATCCATGCTCCCAAGGAGGATGATGTCAACTCTGCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- GATGTTGTGATCATCCATGCTCCCAAGGAGGATGATGTCAACTCTGCTCC
EY919315       <-- GATGTTGTGATCATCCATGCTCCCAAGGAGGATGATGTCAACTCTGCTCC
EX752919       <-- GATGTTGTCATCATCCATACCCCCAAGGAGGATGATGTCAACTCTGCTCC
FD985044       <-- GATGTTGTGATCATCCATGCTCCCAAGGAGGATGATGTCAACTCTGCTCC
FD985439       <-- GATGTTGTGATCATCCATGCTCCCAAGGAGGATGATGTCAACTCTGCTCC
FD544588       <-- GATGTTGTCATCATCCATACCCCCAAGGAGGATGATGTCAACTCTGCTCC
EY920612       <-- ..................................................
EX762163       --> ..................................................
FD989236       --> GATGTTGTGATCATCCATGCTC............................
FD989685       --> ..................................................
EV538832       --> GATGTTGTCATCATCCATACCCCCAAGGAGGATGATGTCA..........
EX748444       --> ..................................................
EY898294       --> ..................................................
EY923528       --> GATGTTGTGATCATCCATGCTCCCAAGGAGGATGATGTCAACTCTGCTCC
EY925051       --> ..................................................
EX749150       --> ..................................................
FD548393       --> ..................................................
EY907765       --> ..................................................
EX758200       --> ..................................................

               750    -    800
UN21358        --> TGCTCAGGTTACTGCTCCGGCTGCCCCTTGCACCGGAAGCTCCCCTCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- TGCTCAGGTTACTGCTCCGGCTGCCC-TTGCACCGGAAGCTCCCCTCACA
EY919315       <-- TGCTCAGGTTACTGCTCCGGCTGCCC-TTGCACCGGAAGCTCCCCTCACA
EX752919       <-- TGCTCAGGTTACTGCTCCGGCTGCCC-TTGCACCGGAAGCTCCCCTCACA
FD985044       <-- TGCTCAGGTTACTGCTCCGGCT-CCCCTTGCACCGGAAGCTCCCCTCACA
FD985439       <-- TGCTCAGGTTACTGCTCCGGCT-CCCCTTGCACCGGAAGCTCCCCTCACA
FD544588       <-- TGCTCAGGTTACTGCTCCGGCTGCCC-TTGCACCGGAAGCTCCCCTCACA
EY920612       <-- .................CGGCTGCCC-TTGCACCGGAAGCTCCCCTCACA
EX762163       --> ..................................................
FD989236       --> ..................................................
FD989685       --> ..................................................
EV538832       --> ..................................................
EX748444       --> ..................................................
EY898294       --> ..................................................
EY923528       --> TGCTCAG-TTACTGCTCCG-CTGCCC-TTGCACCGGAAGCT.........
EY925051       --> ..................................................
EX749150       --> ..................................................
FD548393       --> ..................................................
EY907765       --> ..................................................
EX758200       --> ..................................................

               800    -    850
UN21358        --> GCAGTAGATTACCCTGAGATGATCCCAGTCGCTTAGAAGAAACCCTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- GCAGTAGATTACCCTGAGATGATCCCAGTCGCTTAGAAGAAACCCTTTGG
EY919315       <-- GCAGTAGATTACCCTGAGATGATCCCAGTCGCTTAGAAGAAACCCTTTGG
EX752919       <-- GTAGTAGATTACCCTGAGATGATCCCAGTCGCTTAGAAGAAACCCTTTGG
FD985044       <-- GCAGTAGATTACCCTGAGATGATCCCAGTCGCTTAGAAGAAACCCTTTGG
FD985439       <-- GCAGTAGATTACCCTGAGATGATCCCAGTCGCTTAGAAGAAACCCTTTGG
FD544588       <-- GCAGTAGACTACCCTGAGATGATCCCAGTCGCCTAGAAGAAACCCTTTGG
EY920612       <-- GCAGTAGATTACCCTGAGATGATCCCAGTCGCTTAGAAGAAACCCTTTGG
EX762163       --> ..................................................
FD989236       --> ..................................................
FD989685       --> ..................................................
EV538832       --> ..................................................
EX748444       --> ..................................................
EY898294       --> ..................................................
EY923528       --> ..................................................
EY925051       --> ..................................................
EX749150       --> ..................................................
FD548393       --> ..................................................
EY907765       --> ..................................................
EX758200       --> ..................................................

               850    -    900
UN21358        --> TTACTCTTACCATGGGATACTTCTGTTTTTGTTATAACTATTCTGTGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- TTACTCTTACCATGGGATACTTCTGTTTTTGTTATAACTATTCTGTGCCT
EY919315       <-- TTACTCTTACCATGGGATACTTCTGTTTTTGTTATAACTATTCTGTGCCT
EX752919       <-- TTACTCTTACCATGGGATACTTCTGTTTTTGTTATAACTATTCTGTGTCT
FD985044       <-- TTACTCTTACCATGGGATACTTCTGTTTTTGTTATAACTATTCTGTGCCT
FD985439       <-- TTACTCTTACCATGGGATACTTCTGTTTTTGTTATAACTATTCTGTGCCT
FD544588       <-- TTACTCTTACCATGGGATACTTCTGTTTTTGTTATAACTATTCTGTGTCT
EY920612       <-- TTACTCTTACCATGGGATACTTCTGTTTTTGTTATAACTATTCTGTGCCT
EX762163       --> ..................................................
FD989236       --> ..................................................
FD989685       --> ..................................................
EV538832       --> ..................................................
EX748444       --> ..................................................
EY898294       --> ..................................................
EY923528       --> ..................................................
EY925051       --> ..................................................
EX749150       --> ..................................................
FD548393       --> ..................................................
EY907765       --> ..................................................
EX758200       --> ..................................................

               900    -    950
UN21358        --> CTTGATACTCGGTAGTTGTTTTTCTATATCCTCCAATTAGACAAGTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- CTTGATACTCGGTAGTTGTTTTTCTATATCCTCCAATTAGACAAGTTTTT
EY919315       <-- CTTGATACTCGGTAGTTGTTTTTCTATATCCTCCAATTAGACAAGTTTTT
EX752919       <-- CTTGATACTCGGTAGTTGTTTTTCTATATCCTCCAATTAGACAAGTTTTT
FD985044       <-- CTTGATACTCGGTAGTTGTTTTTCTATATCCTCCAATTAGACAAGTTTTT
FD985439       <-- CTTGATACTCGGTAGTTGTTTTTCTATATCCTCCAATTAGACAAGTTTTT
FD544588       <-- CTTGATACTCGGTAGTTGTTTTTCTAAATCCTCCAATTAGACAAGTTTTT
EY920612       <-- CTTGATACTCGGTAGTTGTTTTTCTATATCCTCCAATTAGACAAGTTTTT
EX762163       --> ..................................................
FD989236       --> ..................................................
FD989685       --> ..................................................
EV538832       --> ..................................................
EX748444       --> ..................................................
EY898294       --> ..................................................
EY923528       --> ..................................................
EY925051       --> ..................................................
EX749150       --> ..................................................
FD548393       --> ..................................................
EY907765       --> ..................................................
EX758200       --> ..................................................

               950    -   1000
UN21358        --> TTT-CTCATGGTTCCAAACTTATGTCAATTATTTTTTAGACTGGATGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- TTT-CTCATGGTTCCAAACTTATGTCAATTATTTTTTAGACTGGATGCTT
EY919315       <-- TTT-TTCATGGTTCCAAACTTATGTCAATTATTTTTTAGACTGGATGCTT
EX752919       <-- TTTTCTCATGGTTCCAAACTTATGTCAAGTATTTTTTAGACTGGATGCTT
FD985044       <-- TTT-TTCATGGTTCCAAACTTATGTCAATTATTTTTTAGACTGGATGCTT
FD985439       <-- TTT-CTCATGGTTCCAAACTTATGTCAATTATTTTTTAGACTGGATGCTT
FD544588       <-- TTT-CTCATGGTTCCAAACTTATGTCAATTATTTTTTAGACTGGATGCTT
EY920612       <-- TTT-CTCATGGTTCCAAACTTATGTCAATTATTTTTTAGACTGGATGCTT
EX762163       --> ..................................................
FD989236       --> ..................................................
FD989685       --> ..................................................
EV538832       --> ..................................................
EX748444       --> ..................................................
EY898294       --> ..................................................
EY923528       --> ..................................................
EY925051       --> ..................................................
EX749150       --> ..................................................
FD548393       --> ..................................................
EY907765       --> ..................................................
EX758200       --> ..................................................

               1000   -   1050
UN21358        --> ATGTTCAATGTAATTTTTGGTCTTAATAAGAACAAAAATTACTACTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571598       <-- ATGTTC..........................................
EY919315       <-- ATGTTCAATGTAATTTTTGGTCTTAATAAGAACAAAAATTACTACT..
EX752919       <-- ATGTTCAATGGAATTTTTGGTCTTAATAAGAACAAAAATTACc.....
FD985044       <-- ATGTTCAATGTAATTTTTGGTCTTAATAAGAACAAAAATTACTACTAT
FD985439       <-- ATGTTCAATGTAATTTTTGGTCTTAATAAGAACAAAAATTACTACTAT
FD544588       <-- ATGTTCAATGGAATTTTTGGTCTTAATAAGAACAAAAATTACTACg..
EY920612       <-- ATGTTCAATGTAATTTTTGGTCTTAATAAGAACAAAAATTACTACT..
EX762163       --> ................................................
FD989236       --> ................................................
FD989685       --> ................................................
EV538832       --> ................................................
EX748444       --> ................................................
EY898294       --> ................................................
EY923528       --> ................................................
EY925051       --> ................................................
EX749150       --> ................................................
FD548393       --> ................................................
EY907765       --> ................................................
EX758200       --> ................................................