1      -     51
UN21359        --> GAGAGAGAACCATTAACCCAATTGTTACTATCTCGTTAAAGTATAGTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD963085       <-- GAGAGAGAACCATTAACCCAATTGTTACTATCTCGTTAAAGTATAGTTCA
EX894435       <-- ..................................................
EX747280       <-- ..................................................
FD532052       <-- ..................................................
EX747308       <-- ..................................................
EX773961       <-- ..................................................
FD938872       <-- ..................................................
EY921397       <-- ..................................................
FD959490       --> GAGAGAGAACCATTAACCCAATTGTTACTATCTCGTTAAAGTATAGTTCA
EX751530       --> ..............AACCCAATTGTTACTATCTCGTTAAAGTATAGTTCA
FD935130       --> ..............gACCCAATTGTTACTATCTCGTTAAAGTATAGTTCA
EX777741       --> ...............cCCCAATTGTTACTATCTCGTTAAAGTATAGTTCA
EX898756       --> ..............ggCCCAATTGTTACTATCTCGTTAAAGTATAGTTCA
EX751509       --> .........................TACTATCTCGTTAAAGTATAGTTCA

               51     -    101
UN21359        --> CGTACGAAATTACACGACTAAGAAATGGCAATCCAGTAGTATTTATCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD963085       <-- CGTACGAAATTACACGACTAAGAAATGGCAATC-AGTAGTATTTATCTAT
EX894435       <-- ............CACGACTAAGAAATG-C-ATCCAGTAGTATT-ATCTAT
EX747280       <-- ............................gcATCCAGTAGTATT-ATCTAT
FD532052       <-- ..................................................
EX747308       <-- ..................................................
EX773961       <-- ..................................................
FD938872       <-- ..................................................
EY921397       <-- ..................................................
FD959490       --> CGTACGAAATTACACGACTAAGAAATGGCAATC-AGTAGTATTTATCTAT
EX751530       --> CGTACGAAATTACACGACTAAGAAATGGCAATC-AGTAGTATTTATCTAT
FD935130       --> CGTACGAAATTACACGACTAAGAAATGGCAATCCAGTAGTATTTATCTAT
EX777741       --> CGTACGAAATTACACGACTAAGAAATGGCAATCCAGTAGTATTTATCTAT
EX898756       --> CGTACGAAATTACACGACTAAGAAATGGCAATCCAGTAGTATTTATCTAT
EX751509       --> CGTACGAAATTACACGACTAAGAAATGGCAATCCAGTAGTATTTATCTAT

               101    -    151
UN21359        --> ACAAATATCTTACAAATCATTTCTCCATATCCAAAAGATATTCAAGTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD963085       <-- ACAAATATCTTACAAATCATTTCTCCATATCCAAAAGATATTCAAGTATT  Raphanus raphanistrum subsp. maritimus
EX894435       <-- ACAAATATCTTACAAATCATTTCTCCATATCCAAA-GATAT-CAAGTAT-  Raphanus sativus cv Early Scarlet Globe
EX747280       <-- ACAAATATCT-ACAAATCATTTCTCCATACCCAAAAGATAT-CAAGGA-T  Raphanus raphanistrum subsp. maritimus
FD532052       <-- ..cAATATCTTACAAATCATTTCTCCATACCCAAA-GATAT-CAAGGATT  Raphanus raphanistrum subsp. maritimus
EX747308       <-- .............AAATCATTTCTCCATATCCAAAAGATAT-CAAGTATT  Raphanus raphanistrum subsp. maritimus
EX773961       <-- .................................AAAGATAT-CAAGGA-T  Raphanus raphanistrum subsp. landra
FD938872       <-- ..................................................  Raphanus sativus var. oleiformis
EY921397       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD959490       --> ACAAATATCTTACAAATCATTTCTCCATATCCAAAAGATATTCAAGTATT  Raphanus raphanistrum subsp. maritimus
EX751530       --> ACAAATATCTTACAAATCATTTCTCCATATCCAAAAGATATTCAAGTATT  Raphanus raphanistrum subsp. maritimus
FD935130       --> ACAAATATCTTACAAATCATTTCTCCATATCCAAAAGATATTCAAGTATT  Raphanus sativus var. oleiformis
EX777741       --> ACAAATATCTTACAAATCATTTCTCCATACCCAAAAGATATTCAAGGATT  Raphanus raphanistrum subsp. landra
EX898756       --> ACAAATATCTTACAAATCATTTCTCCATATCCAAAAGATATTCAAGTATT  Raphanus sativus cv Early Scarlet Globe
EX751509       --> ACAAATATCTTACAAATCATTTCTCCATACCCAAAAGATATTCAAGGATT  Raphanus raphanistrum subsp. maritimus

               151    -    201
UN21359        --> CAACATATGTATCTCTGGTCTACTCCTCTCTCATGTTTGGACCAGCTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD963085       <-- CAACATATGTATCTCTGGTCTACTCCTCTCTCATCTTTGGACCAGCTCAG  Raphanus raphanistrum subsp. maritimus
EX894435       <-- CAACATATGTATCTCTG-TCTACTCCTCTCTCATGTTTGGACCAGCTCAG  Raphanus sativus cv Early Scarlet Globe
EX747280       <-- CAACATATGTATATCTG-TCTACTCCTCTCTCATGTTTG-ACCAGCTCAG  Raphanus raphanistrum subsp. maritimus
FD532052       <-- CAACATATGTATATCTGGTCTACTCCTCTCTCATGTTTGGACCAGCTCAG  Raphanus raphanistrum subsp. maritimus
EX747308       <-- CAACATATGTATCTCTGGTCTACTCCTCTCTCATCTTTGGACCAGCTCAG  Raphanus raphanistrum subsp. maritimus
EX773961       <-- CAACATATGTATATCTG-TCTACTCCTCTCTCATGTTTG-ACCAGCTCAG  Raphanus raphanistrum subsp. landra
FD938872       <-- ..................................................  Raphanus sativus var. oleiformis
EY921397       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD959490       --> CAACATATGTATCTCTGGTCTACTCCTCTCTCATCTTTGGACCAGCTCAG  Raphanus raphanistrum subsp. maritimus
EX751530       --> CAACATATGTATCTCTGGTCTACTCCTCTCTCATCTTTGGACCAGCTCAG  Raphanus raphanistrum subsp. maritimus
FD935130       --> CAACATATGTATCTCTGGTCTACTCCTCTCTCATGTTTGGACCAGCTCAG  Raphanus sativus var. oleiformis
EX777741       --> CAACATATGTATATCTGGTCTACTCCTCTCTCATGTTTGGACCAGCTCAG  Raphanus raphanistrum subsp. landra
EX898756       --> CAACATATGTATCTCTGGTCTACTCCTCTCTCATGTTTGGACCAGCTCAG  Raphanus sativus cv Early Scarlet Globe
EX751509       --> CAACATATGTATATCTGGTCTACTCCTCTCTCATGTTTGGACCAGCTCAG  Raphanus raphanistrum subsp. maritimus

               201    -    251
UN21359        --> GATTTTGTTTCACTTACGATGACAATCTTGGTGTGAAATTTTTTGGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD963085       <-- GATTTTGTTTCACTTACGATGACAATCTTGGTGTGAAATTTTTTGGTTGT
EX894435       <-- GATTTTGTTTCACTTACGATGACAATCTTGGTGTGAAATTTTTTGGTTGT
EX747280       <-- GATTTTGTTTCACTTACGATGACAATCTTGGTGTGAAATTTTTTGGTTGT
FD532052       <-- GATTTTGTTTCACTTACGATGACAATCTTGGTGTGAAATTTTTTGGTTGT
EX747308       <-- GATTTTGTTTCACTTACGATGACAATCTTGGTGTGAAATTTTTTGGTTGT
EX773961       <-- GATTT-G-TTCACTTACGATGACAATCTTGGTGTGAAATTTTT-GGTTGT
FD938872       <-- ......................................TTTTTTGGTTGT
EY921397       <-- ..................................................
FD959490       --> GATTTTGTTTCACTTACGATGACAATCTTGGTGTGAAATTTTTTGGTTGT
EX751530       --> GATTTTGTTTCACTTACGATGACAATCTTGGTGTGAAATTTTTTGGTTGT
FD935130       --> GATTTTGTTTCACTTACGATGACAATCTTGGTGTGAAATTTTTTGGTTGT
EX777741       --> GATTTTGTTTCACTTACGATGACAATCTTGGTGTGAAATTTTTTGGTTGT
EX898756       --> GATTTTGTTTCACTTACGATGACAATCTTGGTGTGAAATTTTTTGGTTGT
EX751509       --> GATTTTGTTTCACTTACGATGACAATCTTGGTGTGAAATTTTTTGGTTGT

               251    -    301
UN21359        --> TAACATTAACAAACACCTCGCATGACACTTTTCC-CTGAATAGGGATTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD963085       <-- TAACATTAACAAACACCTCGCATGACACTTTTCCTCTGAATAGGGATTTG  Raphanus raphanistrum subsp. maritimus
EX894435       <-- TAACATTAACAAACACCTCGCATGACACTTTTCC-CTGAATTGGGATTTG  Raphanus sativus cv Early Scarlet Globe
EX747280       <-- TAACATTAACAAACACCTCGCATGACACTTTTCC-CTGAATAGGGATTTG  Raphanus raphanistrum subsp. maritimus
FD532052       <-- TAACATTAACAAACACCTCGCATGACACTTTTCC-CTGAATAGGGATTTG  Raphanus raphanistrum subsp. maritimus
EX747308       <-- TAACATTAACAAACACCTCGCATGACACTTTTCC-CTGAATAGGGATTTG  Raphanus raphanistrum subsp. maritimus
EX773961       <-- TAACATTAACAAACACCTCGCATGACACTTTTCC-CTGAATTGGGATTTG  Raphanus raphanistrum subsp. landra
FD938872       <-- TAACATTAACAAACACCTCGCATGACACTTTTCC-CTGAATTGGGATTTG  Raphanus sativus var. oleiformis
EY921397       <-- ......................................AATTGGGATTTG  Raphanus raphanistrum subsp. landra
FD959490       --> TAACATTAACAAACACCTCGCATGACACTTTTCC-CTGAATAGGGATTTG  Raphanus raphanistrum subsp. maritimus
EX751530       --> TAACATTAACAAACACCTCGCATGACACTTTTCC-CTGAATAGGGATTTG  Raphanus raphanistrum subsp. maritimus
FD935130       --> TAACATTAACAAACACCTCGCATGACACTTTTCC-CTGAATTGGGATTTG  Raphanus sativus var. oleiformis
EX777741       --> TAACATTAACAAACACCTCGCATGACACTTTTCC-CTGAATTGGGATTTG  Raphanus raphanistrum subsp. landra
EX898756       --> TAACATTAACAAACACCTCGCATGACACTTTTCC-CTGAATTGGGATTTG  Raphanus sativus cv Early Scarlet Globe
EX751509       --> TAACATTAACAAACACCTCGCATGACACTTTTCC-CTGAATAGGGATTTG  Raphanus raphanistrum subsp. maritimus

               301    -    351
UN21359        --> GAAGAGAAGAACACCAAGATCACCTTTGACCTGAGCGATCGTATCAAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD963085       <-- GAAGAGAAGAACACCAAGATCACCTTTGACCTGAGCGATCGTATCAAGAG  Raphanus raphanistrum subsp. maritimus
EX894435       <-- AAAGAGAAGAACACCAAGATCACCTTTGACCTGAGCGATCGTATCAAAAG  Raphanus sativus cv Early Scarlet Globe
EX747280       <-- GAAGAGAAGAACACCAAGATCACCTTTGACCTGAGCGATCGTATCAAAAG  Raphanus raphanistrum subsp. maritimus
FD532052       <-- GAAGAGAAGAACACCAAGATCACCTTTGACCTGAGCGATCGTATCAAAAG  Raphanus raphanistrum subsp. maritimus
EX747308       <-- GAAGAGAAGAACACCAAGATCACCTTTGACCTGAGCGATCGTATCAAAAG  Raphanus raphanistrum subsp. maritimus
EX773961       <-- GAAGAGAAGAACACCAAGATCACCTTTGACCTGAGCGATCGTATCAAAAG  Raphanus raphanistrum subsp. landra
FD938872       <-- AAAGAGAAGAACACCAAGATCACCTTTGACCTGAGCGATAGTATCAAAAG  Raphanus sativus var. oleiformis
EY921397       <-- GAAGAGAAGAACACCAAGATCACCTTTGACCTGAGCGATCGTATCAAAAG  Raphanus raphanistrum subsp. landra
FD959490       --> GAAGAGAAGAACACCAAGATCACCTTTGACCTGAGCGATCGTATCAAGAG  Raphanus raphanistrum subsp. maritimus
EX751530       --> GAAGAGAAGAACACCAAGATCACCTTTGACCTGAGCGATCGTATCAAAAG  Raphanus raphanistrum subsp. maritimus
FD935130       --> AAAGAAAAGAACACCAAGATCACCTTTGACCTGAGCGATAGTATCAAAAG  Raphanus sativus var. oleiformis
EX777741       --> GAAGAAAAGAACACCAAGATCACCTTTGACCTGAGCGATCGTATCAAAAG  Raphanus raphanistrum subsp. landra
EX898756       --> AAAGAGAAGAACACCAAGATCACCTTTGACCTGAGCGATCGTATCAAAAG  Raphanus sativus cv Early Scarlet Globe
EX751509       --> GAAGAGAAGAACACCAAGATCACCTTTGACCTGAGCGATCGTATCAAAAG  Raphanus raphanistrum subsp. maritimus

               351    -    401
UN21359        --> GAATAACACCTTTAGCCAAATCACCGATCAAATAAATCACATCGTGAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD963085       <-- GAATAACACCTTTAGCCAAATCACCGATCAAATAAATCACATCGTGAACA  Raphanus raphanistrum subsp. maritimus
EX894435       <-- GAATAACACCTTTAGCCAAATCACCGATCAAATAAATCACATCGTGAACA  Raphanus sativus cv Early Scarlet Globe
EX747280       <-- GAATAACACCTTTAGCCAAATCACCGATCAAATAAATAACATCGTGAACA  Raphanus raphanistrum subsp. maritimus
FD532052       <-- GAATAACACCTTTAGCCAAATCACCGATCAAATAAATAACATCGTGAACA  Raphanus raphanistrum subsp. maritimus
EX747308       <-- GAATAACACCTTTAGCCAAATCACCGATCAAATAAATCACATCGTGAACA  Raphanus raphanistrum subsp. maritimus
EX773961       <-- GGATAACACCTCTAGCCAAATCACCGATCAAATAAATAACATCGTGAACA  Raphanus raphanistrum subsp. landra
FD938872       <-- GAATAACTCCTTTAGCCAAATCACCGATCAAATAAATCACATCGTGAACA  Raphanus sativus var. oleiformis
EY921397       <-- GGATAACACCTCTAGCCAAATCACCGATCAAATAAATAACATCGTGAACA  Raphanus raphanistrum subsp. landra
FD959490       --> GAATAACACCTTTAGCCAAATCACCGATCAAATAAATCACATCGTGAACA  Raphanus raphanistrum subsp. maritimus
EX751530       --> GAATAACACCTTTAGCCAAATCACCGATCAAATAAATCACATCGTGAACA  Raphanus raphanistrum subsp. maritimus
FD935130       --> GAATAACTCCTTTAGCCAAATCACCGATCAAATAAATCACATCGTGAACA  Raphanus sativus var. oleiformis
EX777741       --> GGATAACACCTCTAGCCAAATCACCGATCAAATAAATAACATCGTGAACA  Raphanus raphanistrum subsp. landra
EX898756       --> GAATAACACCTTTAGCCAAATCACCGATCAAATAAATCACATCGTGAACA  Raphanus sativus cv Early Scarlet Globe
EX751509       --> GAATAACACCTTTAGCCAAATCACCGATCAAATAAATAACATCGTGAACA  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN21359        --> ACCTCTAGACCATCGAGTTCAAGAGTGGCATTAACATAAGAGCTATCACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD963085       <-- ACCTCTAGACCATCGAGTTCAAGAGTGGCATTAACATAAGAGCTATCACG  Raphanus raphanistrum subsp. maritimus
EX894435       <-- ACCTCTAGACCATCGAGTTCAAGAGTGGCATTAATATAAGAGCTATCACG  Raphanus sativus cv Early Scarlet Globe
EX747280       <-- ACCTCTAGACCATCGAGTTCAAGAGTCGCATTAACATAAGAGCTATCACG  Raphanus raphanistrum subsp. maritimus
FD532052       <-- ACCTCTAGACCATCGAGTTCAAGAGTCGCATTAACATAAGAGCTATCACG  Raphanus raphanistrum subsp. maritimus
EX747308       <-- ACCTCTAGACCATCGAGTTCAAGAGTGGCATTAACATAAGGGCTATCACG  Raphanus raphanistrum subsp. maritimus
EX773961       <-- ACCTCAAGACCATCGAGTTCAAGAGTTGCATTAACATAAGAGCTATCACG  Raphanus raphanistrum subsp. landra
FD938872       <-- ACCTCTAGACCATCGAGTTCAAGAGTGGCATTAATATAAGAGCTATCACG  Raphanus sativus var. oleiformis
EY921397       <-- ACCTCAAGACCATCGAGTTCAAGAGTCGCATTAACATAAGAGCTATCACG  Raphanus raphanistrum subsp. landra
FD959490       --> ACCTCTAGACCATCGAGTTCAAGAGTGGCATTAACATAAGAGCTATCACG  Raphanus raphanistrum subsp. maritimus
EX751530       --> ACCTCTAGACCATCGAGTTCAAGAGTGGCATTAACATAAGGGCTATCACG  Raphanus raphanistrum subsp. maritimus
FD935130       --> ACCTCTAGACCATCGAGTTCAAGAGTGGCATTAATATAAGAGCTATCACG  Raphanus sativus var. oleiformis
EX777741       --> ACCTCAAGACCATCGAGTTCAAGAGTTGCATTAACATAAGAGCTATCACG  Raphanus raphanistrum subsp. landra
EX898756       --> ACCTCTAGACCATCGAGTTCAAGAGTGGCATTAATATAAGAGCTATCACG  Raphanus sativus cv Early Scarlet Globe
EX751509       --> ACCTCTAGACCATCGAGTTCAAGAGTCGCATTAACATAAGAGCTATCACG  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN21359        --> AGCACGGAGGTGTCCGCCATTAGACTTGACAAGCCCTAGCTCTCTCCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD963085       <-- AGCACGGAAATGTCCGCCATTAGACTTGACAAGCCCTAGCTCTCTCCCTC  Raphanus raphanistrum subsp. maritimus
EX894435       <-- AGCGCGAAGGTGTCCGCCATTAGACTTGACAAGCCCTAGCTCTCTCCCTC  Raphanus sativus cv Early Scarlet Globe
EX747280       <-- AGCACGGAGGTGTCCGCCATTAGACTTCACAAGCCCTAGCTCTCTCCCTC  Raphanus raphanistrum subsp. maritimus
FD532052       <-- AGCACGGAGGTGTCCGCCATTAGACTTCACAAGCCCTAGCTCTCTCCCTC  Raphanus raphanistrum subsp. maritimus
EX747308       <-- AGCACGGAGGTGTCCGCCATTAGACTTGACAAGCCCTAGCTCTCTCCCTC  Raphanus raphanistrum subsp. maritimus
EX773961       <-- AGCACGGAGGTGTCCGCCATTAGACTTGACAAGCCCTAGCTCTCTCCCTC  Raphanus raphanistrum subsp. landra
FD938872       <-- AGCGCGAAGGTGTCCGCCATTAGACTTGACAAGCCCTAGCTCTCTCCCTC  Raphanus sativus var. oleiformis
EY921397       <-- AGCACGGAGGTGTCCGCCATTAGACTTGACAAGCCCTAGCTCTCTCCCTC  Raphanus raphanistrum subsp. landra
FD959490       --> AGCACGGAAATGTCCGCCATTAGACTTGACAAGCCCTAGCTCTCTCCCTC  Raphanus raphanistrum subsp. maritimus
EX751530       --> AGCACGGAGGTGTCCGCCATTAGACTTGACAAGCCCTAGCTCTCTCCCTC  Raphanus raphanistrum subsp. maritimus
FD935130       --> AGCGCGAAGGTGTCCGCCATTAGACTTGACAAGCCCTAGCTCTCTCCCTC  Raphanus sativus var. oleiformis
EX777741       --> AGCACGGAGGTGTCCGCCATTAAACTTGACAAGCCCTAGCTCTCTCCCTC  Raphanus raphanistrum subsp. landra
EX898756       --> AGCGCGAAGGTGTCCGCCATTAGACTTGACAAGCCCTAGCTCTCTCCCTC  Raphanus sativus cv Early Scarlet Globe
EX751509       --> AGCACGGAGGTGTCCGCCATTAGACTTCACAAGCCCTAGCTCTCTCCCTC  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN21359        --> TATACCCGATCGAGACCACGAGCGAATCGTAATCAAGGGAGAAGAAGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD963085       <-- TATACCCAATCGAGACCACGAGCGAATCGTAATCAAGGGAGAAGAAGTCG  Raphanus raphanistrum subsp. maritimus
EX894435       <-- TATACCCGATCGAGACCACGAGCGAATCGTAATCAAGGGAGAAGAAGTCG  Raphanus sativus cv Early Scarlet Globe
EX747280       <-- TGTACCCGATCGAGACCACAAGCGAATCGTAATCAAGGGAGAAGAAGTCG  Raphanus raphanistrum subsp. maritimus
FD532052       <-- TGTACCCGATCGAGACCACAAGCGAATCGTAATCAAGGGAGAAGAAGTCG  Raphanus raphanistrum subsp. maritimus
EX747308       <-- TATACCCAATCGAGACCACGAGCGAATCGTAATCAAGGGAGAAGAAGTCG  Raphanus raphanistrum subsp. maritimus
EX773961       <-- TATACCCAATCGAGACCACGAGCGAATCGTAATCAAGGGAGAAGAAGTCG  Raphanus raphanistrum subsp. landra
FD938872       <-- TATACCCGATCGAGACCACGAGCGAATCGTAATCAAGGGAGAAGAAGTCG  Raphanus sativus var. oleiformis
EY921397       <-- TATACCCAATCGAGACCACGAGCGAATCGTAATCAAGGGAGAAGAAGTCG  Raphanus raphanistrum subsp. landra
FD959490       --> TATACCCAATCGAGACCACGAGCGAATCGTAATCAAGGGAGAAGAAGTCG  Raphanus raphanistrum subsp. maritimus
EX751530       --> TATACCCAATCGAGACCACGAGCGAATCGTAATCAAGGGAGAAGAAGTCG  Raphanus raphanistrum subsp. maritimus
FD935130       --> TATACCCGATCGAGACCACGAGCGAATCGTAATCAAGGGAGAAGAAGTCG  Raphanus sativus var. oleiformis
EX777741       --> TATACCCAATCGAGACCACGAGCGAATCGTAATCAAGGGAGAAGAAGTCG  Raphanus raphanistrum subsp. landra
EX898756       --> TATACCCGATCGAGACCACGAGCGAATCGTAATCAAGGGAGAAGAAGTCG  Raphanus sativus cv Early Scarlet Globe
EX751509       --> TGTACCCGATCGAGACCACAAGCGAATCGTAATCAAGGGAGAAGAAGTCG  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN21359        --> CGGTTCCTGACTTTGATCGTGAGGGAGAACGAGAGATCGAGGGTGGGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD963085       <-- CGGTTCCTGACTTTGATCGTGAGGGAGAACGAGAGATCGAGGGTGGGTTT
EX894435       <-- CGGTTCCTGACTTTGATCGTGAGGGAAAACGAGAGATCGAGGGTGGGTTT
EX747280       <-- CGGTTCCTGACTTTGATCGTGAGGGAGAACGAGAGATCGAGCGTGGGTTT
FD532052       <-- CGGTTCCTGACTTTGATCGTGAGGGAGAACGAGAGATCGAGCGTGGGTTT
EX747308       <-- CGGTTCCTGACTTTGATCGTGAGGGAGAACGAGAGATCGGGGGTGGGTTT
EX773961       <-- CGGTTCCTGACTTTGATCGTGAGGGAGAACGAGAGATCGAGGGTGGGTTT
FD938872       <-- CGGTTCCTGACTTTGATCGTGAGGGAAAACGAGAGATCGAGGGTGGGTTT
EY921397       <-- CGGTTCCTGACTTTGATCGTGAGGGAGAACGAGAGATCGAGGGTGGGTTT
FD959490       --> CGGTTCCTGACTTTGATCGTGAGGGAGAACGAGAGATCGAGGGTGGGTTT
EX751530       --> CGGTTCCTGACTTTGATCGTGAGGGAGAACGAGAGATCGGGGGTGGGTTT
FD935130       --> CGGTTCCTGACTTTGATCGTGAGGGAaaa.....................
EX777741       --> CGGTTCCTGACTTTGATCGTGAGGGAGAACGAGAGATCGAGGGTGGGTTT
EX898756       --> CGGTTCCTGACTTTGATCGTGAGGGAAAACGAGAGATCGAGGGTGGGTTT
EX751509       --> CGGTTCCTGACTTTGATCGTGAGGGAGAACGAGAGATCGAGCGTGGGTTT

               601    -    651
UN21359        --> AAACGAATCGAGTACTCGTATGTGGTTGAGCTGGATTCGAGAGACTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD963085       <-- AAACGAATCGAGTACTCGTATGTGGTTGAGCTGGATTCGAGAGACTTTGA
EX894435       <-- AAACGAATCGAGGACTCGTATGTGGTTGAGCTGGATTCGAGAGACTTTGA
EX747280       <-- AAACGAATCGAGTACTCGTATGTGGTTGAGCTGGATTCGAGAGACTTTGA
FD532052       <-- AAACGAATCGAGTACTCGTATGTGGTTGAGCTGGATTCGAGAGACTTTGA
EX747308       <-- AAACGAATCGAGTACTCGTATGTGGTTGAGCTGGATTCGAGAGACTTTGA
EX773961       <-- AAACGAATCGAGTACTCATATGTGGTTGAGCTGGATTCGAGAGACTTTGA
FD938872       <-- AAACGAATCGAGGACTCGTATGTGGTTGAGCTGGATTCGAGAGACTTTGA
EY921397       <-- AAACGAATCGAGTACTCGTATGTGGTTGAGCTGGATTCGAGAGACTTTGA
FD959490       --> AAACGAATCGAGTACTCGTATGTGGTTGAGCTGGATTCGAGAGACTTTGA
EX751530       --> AAACGAATCGAGTACTCGTATGTGGTTGAGCTGGATTCGAGAGACTTTGA
FD935130       --> ..................................................
EX777741       --> AAACGAATCGAGTACTCATATGTGGTTGAGCTGGATTCGAGAGACTTTGA
EX898756       --> AAACGAATCGAGGACTCGTATGTGGTTGAGCTGGATTCGAGAGACTTTGA
EX751509       --> AAACGAATCGAGTACTCGTATGTGGTTGAGCTGGATTCGAGAGACTTTGA

               651    -    701
UN21359        --> TTTCTGGATCGGAAGGGTAGAGGAAGTAAACGGCGGCGGAGAGGAGGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD963085       <-- TTTCc.............................................
EX894435       <-- TTTCTGGATCGGAAGGGTAGAGGAGGTAAACGGCGGCGGAGAGGAGGAGG
EX747280       <-- TTTCTGGATCGGAAGGGTAGAGGAAGTAAACGGCGGCGGAGAGGAGGAGG
FD532052       <-- TTTCTGGATCGGAAGGGTAGAGGAAGTAAACGGCGGCGGAGAGGAGGAGG
EX747308       <-- TTTCTGGATCGGAAGGGTAGAGGAAGTAAACGGCGGCGGAGAGGAGGAGG
EX773961       <-- TTTCTGGATCGGAAGGGTAGAGGAAGTAAACGGCGGCGGAGAGGAAGAGG
FD938872       <-- TTTCTGGATCGGAAGGGTAGAGGAGGTAAACGGCGGCGGAGAGGAGGAGG
EY921397       <-- TTTCTGGATCGGAAGGGTAGAGGAAGTAAACGGCGGCGGAGAGGAGGAGG
FD959490       --> TTTCc.............................................
EX751530       --> TTTCTGGATCGGAAGGGTAGAGGAAGTAAACGGCGGCGGAGAGGAGGAGG
FD935130       --> ..................................................
EX777741       --> TTTCTGGATCGGAAGGGTAGAGGAAGTAAACGGCGGCGGAGAGGAAGAGG
EX898756       --> TTTCTGGATCGGAAGGGTAGAGGAGGTAAACGGCGGCGGAGAGGAGGAGG
EX751509       --> TTTCTGGATCGGAAGGGTAGAGGAAGTAAACGGCGGCGGAGAGGAGGAGG

               701    -    751
UN21359        --> ATTGCGGCGGTGAAGAGGAGAGAGCAGCGGAGGGTGCGGAGGAAGGAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD963085       <-- ..................................................
EX894435       <-- ATTGCGGCGGTGAAGAGGAGAGAGCAGCGGAGGTTGCGGAGGAAGAAAGG
EX747280       <-- ATTGCGGCGGTGAAGAGGAGAGAGCAGCGGAGGGTGCGGAGGAAGGAAGG
FD532052       <-- ATTGCGGCGGTGAAGAGGAGAGAGCAGCGGAGGGTGCGGAGGAAGGAAGG
EX747308       <-- ATTGCGGCGGTGAAGAGGAGAGAGCAGCGGAGGGTGCGGAGGAAGGAAGG
EX773961       <-- ATTGAGGCGGTGAAGAGGAGAGAGCAGCGGAGGGTGCGGAGGAAGGAAGG
FD938872       <-- ATTGCGGCGGTGAAGAGGAGAGAGCAGCGGGGGTTGCGGAGGAAGAAAGG
EY921397       <-- ATTGCGGCGGTGAAGAGGAGAGAGCAGCGGAGGGTGCGGAGGAAGGAAGG
FD959490       --> ..................................................
EX751530       --> ATTGCGGCGGTGAAGAGGAGAGAGCAGCGGAGGGTGCGGAGGAAGGAAGG
FD935130       --> ..................................................
EX777741       --> ATTGAGGCGGTGAAGAGGAGAGAGCAGCGGAGGGTGCGGAG.........
EX898756       --> ATTGCGGCGGTGAAGAGGAGAGAGCAGCGGAG-TTGCGGAGGAAGAAAGG
EX751509       --> ATTGCGGCGGTGAAGAGGAGAGAGCAGCGGAGGGTGCGGAGG........

               751    -    801
UN21359        --> GCGACGGTGGCGGCGATAAGGAGTTAAAACGATGACGGTTTGAGAAGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD963085       <-- ..................................................
EX894435       <-- GCGACGGTGGCGGCGATAAGGAGTTAAAACGATGACGGTTTGAGAAGGCT
EX747280       <-- GCGACGGTGGCGGCGATAAGGAGTTAAAACGATGACAGTTTGAGAAGGTT
FD532052       <-- GCGACGGTGGCGGCGATAAGGAGTTAAAACGATGACGGTTTGAGAAGGCT
EX747308       <-- GCGACGGTGGCGGCGATAAGGAGTTAGAACGATGACGGTTTGAGAAGGCT
EX773961       <-- GCGACGGTGGCGGCGATAAGGAGTTAGAACGATGACGGTTTGAGAAGGCT
FD938872       <-- GCGACGGTGGCGGCGATAAGGAGTTAAAACGATGACGGTTTGAGAAGGCT
EY921397       <-- GCGACGGTGGCGGCGATAAGGAGTTAGAACGATGACGGTTTGAGAAGGCT
FD959490       --> ..................................................
EX751530       --> GCGACGGTGGCGGCGA..................................
FD935130       --> ..................................................
EX777741       --> ..................................................
EX898756       --> GCGACG-TGGCGG.....................................
EX751509       --> ..................................................

               801    -    851
UN21359        --> GTGATGATGATGATGAAGGAAGAGGTGTATAAGGGATGCCGTATTCTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD963085       <-- ..................................................
EX894435       <-- GTGATGATGAT---GAAGGAAGAGGTGTATAAGGGATGCTGTATTCTTGC
EX747280       <-- GTGATGATGATGATGAAGGAAGAGGTGTATAAGGGATGCCGTATTCTTGC
FD532052       <-- GTGATGATGATGATGAAGGAAGAGGTGTATAAGGGATGCCGTATTCTTGC
EX747308       <-- GTGATGATGATGATGAAGGAAGAGGTGTATAAGGGATGCCGTATTCTTGC
EX773961       <-- GTGATGATGATGATGAAGGAAGAGGTGTATAAGGGATGCCGTATTCTTGC
FD938872       <-- GTGATGATGAT---GAAGGAAGAGGTGTATAAGGGATGCTGTATTCTTGC
EY921397       <-- GTGATGATGATGATGAAGGAAGAGGTGTATAAGGGATGCCGTATTCTTGC
FD959490       --> ..................................................
EX751530       --> ..................................................
FD935130       --> ..................................................
EX777741       --> ..................................................
EX898756       --> ..................................................
EX751509       --> ..................................................

               851    -    901
UN21359        --> TTCGACGCCATTATCGCCAGCCTAGAGTTAGATGCAAAGTTTCGATGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD963085       <-- ..................................................
EX894435       <-- TTCGACGCCATTATCGCCTGCCTAGAGTTcc...................
EX747280       <-- TTCGACGCCATTATCGCCAGCCTAGAGTTAGATGCAAAGTTTCGATGGTC
FD532052       <-- TTCGACGCCATTATCGCCAGCCTAGAGTTAGATGCAAAGTTTCGATGGTC
EX747308       <-- TTCGACGCCATTATCGCCAGCCTAGAGTTcc...................
EX773961       <-- TTCGACGCCATTATCGCCAGCCTAGAGTTAGATGCAAAGTTTCGATGGTC
FD938872       <-- TTCGACGCCATTATCGCCTGCCTAGAGTTcc...................
EY921397       <-- TTCGACGCCATTATCGCCAGCCTAGAGTTcc...................
FD959490       --> ..................................................
EX751530       --> ..................................................
FD935130       --> ..................................................
EX777741       --> ..................................................
EX898756       --> ..................................................
EX751509       --> ..................................................

               901    -    951
UN21359        --> GCGGTCTCC
                   ~~~~~~~~~
FD963085       <-- .........
EX894435       <-- .........
EX747280       <-- GCGGTCTCC
FD532052       <-- cc.......
EX747308       <-- .........
EX773961       <-- ccc......
FD938872       <-- .........
EY921397       <-- .........
FD959490       --> .........
EX751530       --> .........
FD935130       --> .........
EX777741       --> .........
EX898756       --> .........
EX751509       --> .........