1      -     51
UN21421        --> GGAACTTTCGTCTCTAAGAAACAAAAATAAAAATAAAA-TGGCTTCGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546645       <-- .............ggAAGAAACAAAAATAAAAATAAAA-TGGCTTCGATG
FY438426       <-- .................................aAAAA-TGGCTTCGATG
EY927438       <-- ...........................................TTCGATG
EV531541       <-- ............................................TCGATG
EV530557       <-- ..................................................
EX775840       <-- ..................................................
EY926222       <-- ..................................................
EX893254       <-- ..................................................
EY920017       <-- ..................................................
FD553901       <-- ..................................................
EV527240       --> GGAACTTTCGTCTCTAAGAAACAAAAATAAAAATAAAAATGGCTTCGATG
FD941146       --> GGAACTTTCGCCTCTAAGAAACAAAAATAAAAATAAAA-TGGCTTCGATG
EV525951       --> .ggACTTTCGTCTCTAAGAAACAAAAATAAAATAAAAA-TGGCTTCGATG
EX771732       --> ........gGTCTCTAAGAAACAAAAATAAAAATAAAA-TGGCTTCGATG
EY924347       --> .......ggGTCTCTAAGAAACAAAAATAAAAATAAAA-TGGCTTCGATG
EY933083       --> .........ggCTCTAAGAAACAAAAATAAAAATAAAA-TGGCTTCGATG
EY931488       --> ...........ggCTAAGAAACAAAAATAAAAATAAAA-TGGCTTCGATG
EV551570       --> .............ggAAGAAACAAAAATAAAAATAAAA-TGGCTTCGATG
EX889552       --> .............ggAAGAAACAAAAATAAAAATAAAAATGGCTTCGATG
FD557879       --> .............ggAAGAAACAAAAATAAAAATAAAA-TGGCTTCGATG
FD973596       --> ................gGAAACAAAAATAAAATAAAAA-TGGCTTCGATG
FY430388       --> ...................................AAA-TGGCTTCGATG
FY432457       --> ...................................AAA-TGGCTTCGATG
FY433373       --> ........................................GGCTTCGATG
FD981113       --> ..........................................CTTCGATG
EY929902       --> ..................................................

               51     -    101
UN21421        --> GGTGTTGGCTTACGTGTCACATCTCCCGCCGTTCTCGAAGGAAGCGTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546645       <-- GGTGTTGGCTTACGTGTCACATCTCCCGCCGTTCTCGAAGGAAGCGTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438426       <-- GGTGTTGGCTTACGTGTCACATCTCCCGCCGCTCTCGAAGGAAGCGTGAA  Raphanus sativus cv GSK3-1
EY927438       <-- GGTGTTGGCTTACGTGTCACATCTCCCGCCGTTCTCGAAGGAAGCGTGAA  Raphanus sativus var. oleiformis
EV531541       <-- GGTGTTGGCTTACGTGTCACATCTCCCGCCGTTCTCGAAGGAAGCGTGAA  Raphanus raphanistrum subsp. maritimus
EV530557       <-- .........................................AAGCGTGAA  Raphanus raphanistrum subsp. maritimus
EX775840       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY926222       <-- ..................................................  Raphanus sativus var. oleiformis
EX893254       <-- ..................................................  Raphanus sativus var. oleiformis
EY920017       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD553901       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV527240       --> GGTGTTGGCTTACGTGTCACATCTCCCGCCGTTCTCGAAGGAAGCGTGAA  Raphanus raphanistrum subsp. maritimus
FD941146       --> GGTGTTGGCTTACGTGTCACATCTCCCGCCGTTCTCGAAGGAAGCGTGAA  Raphanus sativus var. oleiformis
EV525951       --> GGTGTTGGCTTACGTGTCACATCTCCCGCCGCTCTCGAAGGAAGCGTGAA  Raphanus raphanistrum subsp. maritimus
EX771732       --> GGTGTTGGCTTACGTGTCACATCTCCCGCCGTTCTCGAAGGAAGCGTGAA  Raphanus raphanistrum subsp. landra
EY924347       --> GGTGTTGGCTTACGTGTCACATCTCCCGCCGTTCTCGAAGGAAGCGTGAA  Raphanus raphanistrum subsp. landra
EY933083       --> GGTGTTGGCTTACGTGTCACATCTCCCGCCGTTCTCGAAGGAAGCGTGAA  Raphanus sativus var. oleiformis
EY931488       --> GGTGTTGGCTTACGTGTCACATCTCCCGCCGTTCTCGAAGGAAGCGTGAA  Raphanus sativus var. oleiformis
EV551570       --> GGTGTTGGCTTACGTGTCACATCTCCCGCCGTTCTCGAAGGAAGCGTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX889552       --> GGTGTTGGCTTACGTGTCACATCTCCCGCCGTTCTCGAAGGAAGCGTGAA  Raphanus sativus var. oleiformis
FD557879       --> GGTGTTGGCTTACGTGTCACATCTCCCGCCGTTCTCGAAGGAAGCGTGAA  Raphanus raphanistrum subsp. landra
FD973596       --> GGTGTTGGCTTACGTGTCACATCTCCCGCCGTTCTCGAAGGAAGCGTGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY430388       --> GGTGTTGGCTTACGTGTCACATCTCCCGCCGCTCTCGAAGGAAGCGTGAA  Raphanus sativus cv GSK3-1
FY432457       --> GGTGTTGGCTTACGTGTCACATCTCCCGCCGCTCTCGAAGGAAGCGTGAA  Raphanus sativus cv GSK3-1
FY433373       --> GGTGTTGGCTTACGTGTCACATCTCCCGCCGCTCTCGAAGGAAGCGTGAA  Raphanus sativus cv GSK3-1
FD981113       --> GGTGTTGGCTTACGTGTCACATCTCCCGCCGTTCTCGAAGGAAGCGTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY929902       --> ..................................................  Raphanus sativus var. oleiformis

               101    -    151
UN21421        --> GATCAACGGCTCTAGCCGTCTGAACGTAACCGGAAGAGTAACGGTGGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546645       <-- GATCAACGGCTCTAGC-----CGT-TTAACCGGAAGAGTAACGGTGGCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438426       <-- GATCAACGGCTCTAGCCGTCTGAACGTAACCGGAAGAGTAACAGTGGCTC  Raphanus sativus cv GSK3-1
EY927438       <-- GATCAACGGCTCTAGC-----CGT-TTAACCGGAAGAGTAACGGTGGCTC  Raphanus sativus var. oleiformis
EV531541       <-- GATCAACGGCTCTAGCCGTCTGAACGTAACCGGAAAAGTAACGGTGGCTC  Raphanus raphanistrum subsp. maritimus
EV530557       <-- GATCAACGGCTCTAGCCGTCTGAACGTAACCGGAAGAGTAACAGTGGCTC  Raphanus raphanistrum subsp. maritimus
EX775840       <-- ....................TGAACGTAACCGGAAAAGTAACGGTGGCTC  Raphanus raphanistrum subsp. landra
EY926222       <-- ....................................AGTAACGGTGGCTC  Raphanus sativus var. oleiformis
EX893254       <-- ..................................................  Raphanus sativus var. oleiformis
EY920017       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD553901       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV527240       --> GATCAACGGCTCTAGCCGTCTGAACGTAACCGGAAAAGTAACGGTGGCTC  Raphanus raphanistrum subsp. maritimus
FD941146       --> GATCAACGGCTCTAGCCGT-T-----TAACCGGAAGAGTAACGGTGGCTC  Raphanus sativus var. oleiformis
EV525951       --> GATCAACGGCTCTAGCCGTCTGAACGTAACCGGAAGAGTAACAGTGGCTC  Raphanus raphanistrum subsp. maritimus
EX771732       --> GATCAACGGCTCTAGCCGTCTGAACGTAACCGGAAAAGTAACGGTGGCTC  Raphanus raphanistrum subsp. landra
EY924347       --> GATCAACGGCTCTAGCCGTCTGAACGTAACCGGAAAAGTAACGGTGGCTC  Raphanus raphanistrum subsp. landra
EY933083       --> GATCAACGGCTCTAGCCGT-T-----TAACCGGAAGAGTAACGGTGGCTC  Raphanus sativus var. oleiformis
EY931488       --> GATCAACGGCTCTAGCCGT-T-----TAACCGGAAGAGTAACGGTGGCTC  Raphanus sativus var. oleiformis
EV551570       --> GATCAACGGCTCTAGCCGT-T-----TAACCGGAAGAGTAACGGTGGCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX889552       --> GATCAACGGCTCTAGCCGTCTGAACGTAACCGGAAAAGTAACGGTGGCTC  Raphanus sativus var. oleiformis
FD557879       --> GATCAACGGCTCTAGCCGTCTGAACGTAACCGGAAAAGTAACGGTGGCTC  Raphanus raphanistrum subsp. landra
FD973596       --> GATCAACGGCTCTAGCCGTCTGAACGTAACCGGAAAAGTAACGGTGGCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FY430388       --> GATCAACGGCTCTAGCCGTCTGAACGTAACCGGAAGAGTAACAGTGGCTC  Raphanus sativus cv GSK3-1
FY432457       --> GATCAACGGCTCTAGCCGTCTGAACGTAACCGGAAGAGTAACAGTGGCTC  Raphanus sativus cv GSK3-1
FY433373       --> GATCAACGGCTCTAGCCGTCTGAACGTAACCGGAAGAGTAACAGTGGCTC  Raphanus sativus cv GSK3-1
FD981113       --> GATCAACGGCTCTAGCCGTCTGAACGTAACCGGAAAAGTAACGGTGGCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY929902       --> .................................AAGAGTAACGGTGGCTC  Raphanus sativus var. oleiformis

               151    -    201
UN21421        --> AAAGGTCTGGACTTGTCGTCAGAGCTCAGCAGAGCGAGGCGGCACCAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546645       <-- AAAGGTCAGGACTTGTCGTCAGAGCTCAGCAGAGCGAGGCGGCACCAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438426       <-- AAAGGTCTGGACTTCTCGTCAGAGCTCAGCAGAGCGAGGCGGCTCCGGAG  Raphanus sativus cv GSK3-1
EY927438       <-- AAAGGTCAAGACTTGTCGTCAGAGCTCAGCAGAGCGAGGCGGCACCAGAG  Raphanus sativus var. oleiformis
EV531541       <-- AAAGGTCTGGACTTGTCGTCAGAGCTCAGCAGAGCGAGGCGGCACCAGAG  Raphanus raphanistrum subsp. maritimus
EV530557       <-- AAAGGTCTGGACTTCTCGTCAGAGCTCAGCAGAGCGAGGCGGCTCCGGAG  Raphanus raphanistrum subsp. maritimus
EX775840       <-- AAAGGTCTGGACTTGTCGTCAGAGCTCAGCAGAGCGAGGCGGCACCAGAG  Raphanus raphanistrum subsp. landra
EY926222       <-- AAAGGTCAGGACTTGTCGTCAGAGCTCAGCAGAGCGAGGCGGCACCAGAG  Raphanus sativus var. oleiformis
EX893254       <-- ..................................................  Raphanus sativus var. oleiformis
EY920017       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD553901       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV527240       --> AAAGGTCTGGACTTGTCGTCAGAGCTCAGCAGAGCGAGGCGGCACCAGAG  Raphanus raphanistrum subsp. maritimus
FD941146       --> AAAGGTCAGGACTTGTCGTCAGAGCTCAGCAGAGCGAGGCGGCACCAGAG  Raphanus sativus var. oleiformis
EV525951       --> AAAGGTCTGGACTTCTCGTCAGAGCTCAGCAGAGCGAGGCGGCTCCGGAG  Raphanus raphanistrum subsp. maritimus
EX771732       --> AAAGGTCTGGACTTGTCGTCAGAGCTCAGCAGAGCGAGGCGGCACCAGAG  Raphanus raphanistrum subsp. landra
EY924347       --> AAAGGTCTGGACTTGTCGTCAGAGCTCAGCAGAGCGAGGCGGCACCAGAG  Raphanus raphanistrum subsp. landra
EY933083       --> AAAGGTCAGGACTTGTCGTCAGAGCTCAGCAGAGCGAGGCGGCACCAGAG  Raphanus sativus var. oleiformis
EY931488       --> AAAGGTCAAGACTTGTCGTCAGAGCTCAGCAGAGCGAGGCGGCACCAGAG  Raphanus sativus var. oleiformis
EV551570       --> AAAGGTCAGGACTTGTCGTCAGAGCTCAGCAGAGCGAGGCGGCACCAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX889552       --> AAAGGTCTGGACTTGTCGTCAGAGCTCAGCAGAGCGAGGCGGCACCAGAG  Raphanus sativus var. oleiformis
FD557879       --> AAAGGTCTGGACTTGTCGTCAGAGCTCAGCAGAGCGAGGCGGCACCAGAG  Raphanus raphanistrum subsp. landra
FD973596       --> AAAGGTCTGGACTTGTCGTCAGAGCTCAGCAGAGCGAGGCGGCACCAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY430388       --> AAAGGTCTGGACTTCTCGTCAGAGCTCAGCAGAGCGAGGCGGCTCCGGAG  Raphanus sativus cv GSK3-1
FY432457       --> AAAGGTCTGGACTTCTCGTCAGAGCTCAGCAGAGCGAGGCGGCTCCGGAG  Raphanus sativus cv GSK3-1
FY433373       --> AAAGGTCTGGACTTCTCGTCAGAGCTCAGCAGAGCGAGGCGGCTCCGGAG  Raphanus sativus cv GSK3-1
FD981113       --> AAAGGTCTGGACTTGTCGTCAGAGCTCAGCAGAGCGAGGCGACACCAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY929902       --> AAAGGTCAGGACTTGTCGTCAGAGCTCAGCAGAGCGAGGCGGCACCAGAG  Raphanus sativus var. oleiformis

               201    -    251
UN21421        --> ACTACTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546645       <-- ACTACTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438426       <-- ACTTCTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus sativus cv GSK3-1
EY927438       <-- ACTACTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus sativus var. oleiformis
EV531541       <-- ACTACTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus raphanistrum subsp. maritimus
EV530557       <-- ACTTCTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus raphanistrum subsp. maritimus
EX775840       <-- ACTACTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus raphanistrum subsp. landra
EY926222       <-- ACTACTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus sativus var. oleiformis
EX893254       <-- ..................................................  Raphanus sativus var. oleiformis
EY920017       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD553901       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV527240       --> ACTACTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus raphanistrum subsp. maritimus
FD941146       --> TCTACTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus sativus var. oleiformis
EV525951       --> ACTTCTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus raphanistrum subsp. maritimus
EX771732       --> ACTACTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus raphanistrum subsp. landra
EY924347       --> ACTACTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus raphanistrum subsp. landra
EY933083       --> ACTACTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus sativus var. oleiformis
EY931488       --> ACTACTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus sativus var. oleiformis
EV551570       --> ACTACTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX889552       --> ACTACTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus sativus var. oleiformis
FD557879       --> ACTACTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus raphanistrum subsp. landra
FD973596       --> ACTACTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY430388       --> ACTTCTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus sativus cv GSK3-1
FY432457       --> ACTTCTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus sativus cv GSK3-1
FY433373       --> ACTTCTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus sativus cv GSK3-1
FD981113       --> ACTAC.............................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY929902       --> ACTACTCGAAGGTCTGTGATTGGGCTCGTGGCTGCTGGTTTAGCCGGTGG  Raphanus sativus var. oleiformis

               251    -    301
UN21421        --> CTCGTTTGTTCAGGCCGTTCTCGCCGATGCTGTTCCTATCAAAATTGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546645       <-- CTCGTTTGTTCAGGCCGTTCTCGCCGATGCTGTTCCTATCAAAATTGGCC
FY438426       <-- CTCGTTTGTTCAGGCCGTTCTCGCCGATGCTGTTCCTATCAAAATTGGCC
EY927438       <-- CTCGTTTGTTCAGGCCGTTCTCGCCGATGCTGTTCCTATCAAAATTGGCC
EV531541       <-- CTCGTTTGTTCAGGCTGTACTCGCCGATGCTGTCCCGATCAAAATTGGCC
EV530557       <-- CTCGTTTGTTCAGGCCGTTCTCGCCGATGCTGTTCCTATCAAAATTGGCC
EX775840       <-- CTCGTTTGTTCAGGCCGTTCTCGCCGATGCTGTTCCTATCAAAATTGGCC
EY926222       <-- CTCGTTTGTTCAGGCCGTCCTCGCCGATGCTGTTCCTATCAAAATTGGCC
EX893254       <-- ......TGTTCAGGCTGTACTCGCCGATGCTGTCCCGATCAAAATTGGCC
EY920017       <-- ..................................................
FD553901       <-- ..................................................
EV527240       --> CTCGTTTGTTCAGGCTGTACTCGCCGATGCTGTCCCGATCAAAATTGGCC
FD941146       --> CTCGTTTGTTCAGGCCGTTCTCGCCGATGCTGTTCCTATCAAAATTGGCC
EV525951       --> CTCGTTTGTTCAGGCCGTTCTCGCCGATGCTGTTCCTATCAAAATTGGCC
EX771732       --> CTCGTTTGTTCAGGCCGTTCTCGCCGATGCTGTTCCTATCAAAATTGGCC
EY924347       --> CTCGTTTGTTCAGGCCGCTCTCGCCGATGCTGTTCCTATCAAAATTGGCC
EY933083       --> CTCGTTTGTTCAGGCCGTTCTCGCCGATGCTGTTCCTATCAAAATTGGCC
EY931488       --> CTCGTTTGTTCAGGCCGTTCTCGCCGATGCTGTTCCTATCAAAATTGGCC
EV551570       --> CTCGTTTGTTCAGGCCGTTCTCGCCGATGCTGTTCCTATCAAAATTGGCC
EX889552       --> CTCGTTTGTTCAGGCTGTACTCGCCGATGCTGTCCCGATCAAAATTGGCC
FD557879       --> CTCGTTTGTTCAGGCCGTTCTCGCCGATGCTGTTCCTATCAAAATTGGCC
FD973596       --> CTCGTTTGTTCAGGCCGTTCTCGCCGATGCTGTTCCTATCAAAATTGGCC
FY430388       --> CTCGTTTGTTCAGGCCGTTCTCGCCGATGCTGTTCCTATCAAAATTGGCC
FY432457       --> CTCGTTTGTTCAGGCCGTTCTCGCCGATGCTGTTCCTATCAAAATTGGCC
FY433373       --> CTCGTTTGTTCAGGCCGTTCTCGCCGATGCTGTTCCTATCAAAATTGGCC
FD981113       --> ..................................................
EY929902       --> CTCGTTTGTTCAGGCCGTCCTCGCCGATGCTGTTCCTATCAAAATTGGCC

               301    -    351
UN21421        --> CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAGACCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546645       <-- CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAG----A
FY438426       <-- CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAGACCAA
EY927438       <-- CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAGACCAA
EV531541       <-- CTCCTCCACCTCCCTCCGGTGGTCTTCCTGTGACAGATAACTCAGACCAA
EV530557       <-- CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAGACCAA
EX775840       <-- CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAGACCAA
EY926222       <-- CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAGACCAA
EX893254       <-- CTCCTCCACCTCCCTCCGGTGGTCTTCCTGGGACAGATAACTCAGACCAA
EY920017       <-- ..................................................
FD553901       <-- ..................................................
EV527240       --> CTCCTCCACCTCCCTCCGGTGGTCTTCCTGTGACAGATAACTCAGACCAA
FD941146       --> CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAGACCAA
EV525951       --> CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAGACCAA
EX771732       --> CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAGACCAA
EY924347       --> CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAGACCAA
EY933083       --> CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAGACCAA
EY931488       --> CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAGACCAA
EV551570       --> CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAGACC--
EX889552       --> CTCCTCCACCTCCCTCCGGTGGTCTTCCTGGGACAGATAACTCAGACCAA
FD557879       --> CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAGACCAA
FD973596       --> CTCCTCCACCTCCCTCCGGTGGTCTTCCTGGGACAGATAACTCAGACCAA
FY430388       --> CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAGACCAA
FY432457       --> CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAGACCAA
FY433373       --> CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAGACCAA
FD981113       --> ..................................................
EY929902       --> CTCCTCCACCTCCCTCCGGCGGTCTTCCTGGGACAGATAACTCAGACCAA

               351    -    401
UN21421        --> GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546645       <-- CCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
FY438426       <-- GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
EY927438       <-- GCGAGAGTTCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
EV531541       <-- GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
EV530557       <-- GCGAGAGATTTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
EX775840       <-- GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
EY926222       <-- GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
EX893254       <-- GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
EY920017       <-- ............AAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
FD553901       <-- ..................................................
EV527240       --> GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
FD941146       --> GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
EV525951       --> GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
EX771732       --> GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
EY924347       --> GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
EY933083       --> GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
EY931488       --> GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
EV551570       --> --GAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
EX889552       --> GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
FD557879       --> GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
FD973596       --> GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
FY430388       --> GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
FY432457       --> GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
FY433373       --> GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT
FD981113       --> ..................................................
EY929902       --> GCGAGAGATCTGAAACTGGCGTTGAAGGAAAGGTTTTATTTACAGCCATT

               401    -    451
UN21421        --> GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546645       <-- GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
FY438426       <-- GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
EY927438       <-- GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
EV531541       <-- GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
EV530557       <-- GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
EX775840       <-- GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
EY926222       <-- GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
EX893254       <-- GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
EY920017       <-- GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTACCAAGGAGATCG
FD553901       <-- ..................................................
EV527240       --> GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
FD941146       --> GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAATGAGATCG
EV525951       --> GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
EX771732       --> GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
EY924347       --> GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTACCAAGGAGATCG
EY933083       --> GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
EY931488       --> GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
EV551570       --> GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
EX889552       --> GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
FD557879       --> GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
FD973596       --> GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCGAAGGAGATCG
FY430388       --> GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
FY432457       --> GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
FY433373       --> GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG
FD981113       --> ..................................................
EY929902       --> GCCACCGACGGAAGCTGTGGCTAGAGCCAAAGAATCTGCCAAGGAGATCG

               451    -    501
UN21421        --> TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546645       <-- TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
FY438426       <-- TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATA..........
EY927438       <-- TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
EV531541       <-- TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
EV530557       <-- TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
EX775840       <-- TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
EY926222       <-- TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
EX893254       <-- TGAATGTGAAGTCATTGATCGACAAGAAAGTTTGGCCATATGTTCAGAAC
EY920017       <-- TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
FD553901       <-- ..................................................
EV527240       --> TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
FD941146       --> TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
EV525951       --> TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
EX771732       --> TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
EY924347       --> TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
EY933083       --> TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
EY931488       --> TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
EV551570       --> TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
EX889552       --> TGAATGTGAAGTCATTGATCGACAAGAAAGTTTGGCCATATGTTCAGAAC
FD557879       --> TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
FD973596       --> TGAATGTGAAGTCATTGATCGAC...........................
FY430388       --> TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
FY432457       --> TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
FY433373       --> TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC
FD981113       --> ..................................................
EY929902       --> TGAATGTGAAGTCATTGATCGACAAGAAAGCTTGGCCATATGTTCAGAAC

               501    -    551
UN21421        --> GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546645       <-- GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
FY438426       <-- ..................................................
EY927438       <-- GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
EV531541       <-- GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
EV530557       <-- GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
EX775840       <-- GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
EY926222       <-- GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
EX893254       <-- GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
EY920017       <-- GATTTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
FD553901       <-- ..................................................
EV527240       --> GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
FD941146       --> GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
EV525951       --> GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
EX771732       --> GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
EY924347       --> GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
EY933083       --> GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
EY931488       --> GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
EV551570       --> GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
EX889552       --> GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
FD557879       --> GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
FD973596       --> ..................................................
FY430388       --> GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
FY432457       --> GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
FY433373       --> GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT
FD981113       --> ..................................................
EY929902       --> GATCTCCGTCTCAGGGCGTCTTACCTCCGTTATGACCTTAACACAATCAT

               551    -    601
UN21421        --> CTCTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546645       <-- CTCTTCCAAATCCAAGGATGAGAAGAAGTCCCTCAAGGAGCTCACTGGAA
FY438426       <-- ..................................................
EY927438       <-- CTCTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
EV531541       <-- CTCTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
EV530557       <-- CTCTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
EX775840       <-- CTCTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
EY926222       <-- CTCTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
EX893254       <-- CTTTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
EY920017       <-- TTTTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
FD553901       <-- ..................................................
EV527240       --> CTCTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
FD941146       --> CTCTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
EV525951       --> CTCTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
EX771732       --> CTCTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
EY924347       --> CTCTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
EY933083       --> CTCTTCCAAACCCAAAGATGAGAAGAAGTCTCTCAAGGAGCTCACTG...
EY931488       --> CTCTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
EV551570       --> CTCTTCCAAATCCAAGGATGAGAAGAAGTCCCTCAAGGAGCTCACTGGAA
EX889552       --> CTCTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
FD557879       --> CTCTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
FD973596       --> ..................................................
FY430388       --> CTCTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
FY432457       --> CTCTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
FY433373       --> CTCTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA
FD981113       --> ..................................................
EY929902       --> CTCTTCCAAATCCAAGGATGAGAAGAAGTCTCTCAAGGAGCTCACTGGAA

               601    -    651
UN21421        --> AGCTCTTTGATACCATCAACAACCTGGACTATGCGGCGAAGAAGAAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546645       <-- AGCTCTTTGATACCATCGACAACCTGGACTATGCGGCGAAGAAGAAGAGT
FY438426       <-- ..................................................
EY927438       <-- AGCTCTTTGATACCATCAACAACCTGGACTATGCGGCGAAGAAGAAGAGT
EV531541       <-- AGCTCTTTGATACCATCAACAACCTGGACTATGCGGCGAAGAAGAAGAGT
EV530557       <-- AGCTCTTTGATACCATCAACAACCTGGACTATGCGGCGAAGAAGAAGAGT
EX775840       <-- AGCTCTTTGATACCATCAACAACCTGTACTATGCGGCGAAGAAGAAGAGT
EY926222       <-- AGCTCTTTGATACCATCAACAACCTGGACTATGCGGCGAAGAA.......
EX893254       <-- AGCTCTTTGATACCATCAACAACCTGGACTATGCGGCGAAGAAGAAGAGT
EY920017       <-- AGCTCTTTGATTCCATCAACAACCTGGACTATGGGGCGAAGAAGAAGAGT
FD553901       <-- ..................................................
EV527240       --> -GCTCTTTGATACCATCAACAACCTGGACTATGCGGCGAAGAAGAAGAGT
FD941146       --> AGCTCTTTGATACCATCAACAACCTGGACTATGCGGCGAAGAAGAAGAGT
EV525951       --> AGCTCTTTGATACCATCAACAACCTGGACTATGCGGCGAAGAAGAAGAGT
EX771732       --> AGCTCTTTGATACCATCAACAACCTGTACTATGCGGCGAAGAAGAAGAGT
EY924347       --> AGCTCTTTGATTCCATCAACAACCTGGACTATGGGGCGAAGAAGAAGAGT
EY933083       --> ..................................................
EY931488       --> AGCTCTTTGATACCATCAACAACCTGGACTATGCGGCGAAGAAGAAGAGT
EV551570       --> AGCTCTTTGATACCATCGACAACCTGGACTATGCGGCGAAGAAGAAGAGT
EX889552       --> AGCTCTTTGATACCATCAACAACCTGGACTATGCGGCGAA..........
FD557879       --> AGCTCTTTGATACCATCAACAACCTGGACTATGCGGCGAAGAAGAAGAGT
FD973596       --> ..................................................
FY430388       --> AGCTCTTTGATACCATCAACAACCTGGACTATGCGGCGAAGAAGAAGAGT
FY432457       --> AGCTCTTTGATACCATCAACAACCTGGACTATGCGGCGAAGAAGAAGAGT
FY433373       --> AGCTCTTTGATACCATCAACAACCTGGACTATGCGGCGAAGAAGAAGAGT
FD981113       --> ..................................................
EY929902       --> AGCTCTTTGATACCATCAACAACCTGGACTATGCGGCGAAGAAGAAGAGT

               651    -    701
UN21421        --> ACTCCGGATGCTGAGAAGTACTATTCAGAGACTGTCTCTACTTTGAACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546645       <-- ACTCCGGATGCTGAGAAGTACTATTCAGAGACTGTCTCTACTTTGAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438426       <-- ..................................................  Raphanus sativus cv GSK3-1
EY927438       <-- ACTCCGGATGCTGAGAAGTACTATTCAGAGACTGTCTCTACTTTGAACGA  Raphanus sativus var. oleiformis
EV531541       <-- ACTCCGGATGCTGAGAAGTACTATTCAGAGACTGTCTCTACTTTGAACGA  Raphanus raphanistrum subsp. maritimus
EV530557       <-- ACTCCGGATGCCGAGAAGTACTATTCAGAGACTGTCTCTACTTTGAACGA  Raphanus raphanistrum subsp. maritimus
EX775840       <-- ACTCCGGATGCTGAGAAGTACTATTCAGAGACTGTCTCTACTTTGAACGA  Raphanus raphanistrum subsp. landra
EY926222       <-- ..................................................  Raphanus sativus var. oleiformis
EX893254       <-- ACTCCGGATGCTGAGAAGTACTATTCAGAGACTGTCTCTACTTTGAACGA  Raphanus sativus var. oleiformis
EY920017       <-- ACTCCGGATGCTGAGAAGTACTATTCAGAGACTGTCTTTACTTTGAACGA  Raphanus raphanistrum subsp. landra
FD553901       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV527240       --> ACTCCGGATGCTGAGAAGTACTATTCAGAGACTGTCTCTACTTTGAACGA  Raphanus raphanistrum subsp. maritimus
FD941146       --> ACTCCGGATGCTGAGAAGTACTATTCAGAGACTGTCTCTACTTTGAACGA  Raphanus sativus var. oleiformis
EV525951       --> ACTCCGGATGCCGAGAAGTACTATTCAGAGACTGTCTCTACTCTGAACGA  Raphanus raphanistrum subsp. maritimus
EX771732       --> ACTCCGGATGCTGAGAAGTACTATTCAGAGACTGTCTCTACTTTGAACGA  Raphanus raphanistrum subsp. landra
EY924347       --> ACTCCGGATGCTGAGAAGTACTATTCAGAGACTGTCTCTACTTTGAACGA  Raphanus raphanistrum subsp. landra
EY933083       --> ..................................................  Raphanus sativus var. oleiformis
EY931488       --> ACTCCGGATGCTGAGAAGTACTATTCAGAGACTGTCTCTACTTTGAACGA  Raphanus sativus var. oleiformis
EV551570       --> ACTCCGGATGCTGAGAAGTACTATTCAGAGACTGTCTCTACTTTGAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX889552       --> ..................................................  Raphanus sativus var. oleiformis
FD557879       --> ACTCCGGATGCTGAGAAGTACTATT.........................  Raphanus raphanistrum subsp. landra
FD973596       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY430388       --> ACTCCGGATGCTGAGAAGTACTATTCAGAGACTGTCTCTACTCTGAACGA  Raphanus sativus cv GSK3-1
FY432457       --> ACTCCGGATGCTGAGAAGTACTATTCAGAGACTGTCTCTACTCTGAACGA  Raphanus sativus cv GSK3-1
FY433373       --> ACTCCGGATGCTGAGAAGTACTATTCAGAGACTGTCTCTACTCTGAACGA  Raphanus sativus cv GSK3-1
FD981113       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY929902       --> ACTCCGGATGCTGAGAAGTACTATTCAGAGACTGTCTCTACTTTGAACGA  Raphanus sativus var. oleiformis

               701    -    751
UN21421        --> TGTTCTCGCCAAGCTTGGTTAACCATTTCGAGTCTGCATTTTTCTTTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546645       <-- TGTTCTCGCCAAGCTTGGTTAACCATTTCGAGTCTGCATTTTTCTTTGTA
FY438426       <-- ..................................................
EY927438       <-- TGTTCTCGCCAAGCTTGGTTAACCATTTCGAGTCTGCATTTTTCTTTGTA
EV531541       <-- TGTTCTCGCCAAGCTTGGTTAACCATTTCGAGTCTGCATTTTTCTTTGTA
EV530557       <-- TGTTCTCGCCAAGCTTGGTTAACCATTTCGAGTTTGCATTTTTCTTTGTA
EX775840       <-- TGTTCTCGCCAAGCTTGGTTAACCATTTCGAGTCTGCATTTTTCTTTGTA
EY926222       <-- ..................................................
EX893254       <-- TGTTCTCGCCAAGCTTGGTTAACCATTTCGAGTCCGCATTTTTCTTTGTA
EY920017       <-- TGTTCTCGCCAAGCTTGGTTAACCATTTCGAGTCTGCATTTTTCTTTGTA
FD553901       <-- ......................................TTTTTCTTTGTA
EV527240       --> TGTTCTCGCCAAGCTTGGTTAACCATTTCGAGTCTGCATTTTTCTTTGTA
FD941146       --> TGTTCTCGCCAAGCTTGGTTAACCATTTCGAGTCTGCA............
EV525951       --> TGTTCTCGCCAAGCTTGGTTAACCATTTCGAGTCTGCATTTTTCTTTGTA
EX771732       --> TGTTCTCGCCAAGCTTGGTTAACCATTTCGAGTCTGCATTTTTCTTTGTA
EY924347       --> TGT-CTCGCCAAGCTTGGTTAACCATTTCGAGTCTGCATTTT-CTTTGTA
EY933083       --> ..................................................
EY931488       --> TGTTCTCGCCAAGCTTGGTTAACCATTTCGAGTCTGCATTTT-CTTTGTA
EV551570       --> TGTTCTCGCCAAGCTTGGTTAACCATTTCGAGTCTGCATTTTTCTTTGTA
EX889552       --> ..................................................
FD557879       --> ..................................................
FD973596       --> ..................................................
FY430388       --> TGTTCTCGCCAAGCTTGGTTAACCATTTCGAGTCTGCATTTTTCTTTGTA
FY432457       --> TGTTCTCGCCAAGCTTGGTTAACCATTTCGAGTCTGCATTTTTCTTTGTA
FY433373       --> TGTTCTCGCCAAGCTTGGTTAACCATTTCGAGTCTGCATTTTTCTTTGTA
FD981113       --> ..................................................
EY929902       --> TGTTCTC...........................................

               751    -    801
UN21421        --> AATTTATTGTGTCTTGATTTTTGTTTCCTGAGTACTTAATACTCAAATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546645       <-- AATTTATTGTGTCTTGATTTTTGTTTCCTGAGTACTTAATACTCAAATCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438426       <-- ..................................................  Raphanus sativus cv GSK3-1
EY927438       <-- AATTTATTGTGTCTTGATTTTTGTTTCCTGAGTACTTAATACTCAAATCC  Raphanus sativus var. oleiformis
EV531541       <-- AATTTATTGTGTCTTGATTTTTGTTTCCTGAGTACTTAATACTCAAATCC  Raphanus raphanistrum subsp. maritimus
EV530557       <-- AATTTATTGGGTCTTGATTTTTGTTTCCTGAGTACTTAATACTCAAATCC  Raphanus raphanistrum subsp. maritimus
EX775840       <-- AATTTATTGTGTCTTGATTTTTGTTTCCTGAGTACTTAATACTCAAATCC  Raphanus raphanistrum subsp. landra
EY926222       <-- ..................................................  Raphanus sativus var. oleiformis
EX893254       <-- AATTTATTGTGTCTTGATCTTTGTTTCCTGAGTACTTAATACTCAAATCC  Raphanus sativus var. oleiformis
EY920017       <-- AATTTATTGTGTCTTGATTTTTGTTTCCTGAGTACTTAATACTCAAATCC  Raphanus raphanistrum subsp. landra
FD553901       <-- AATTTATTGTGTCTTGATTTTTGTTTCCTGAGTACTTAATACTCAAATCC  Raphanus raphanistrum subsp. landra
EV527240       --> AATTTATTGTGTCTTGATTTTTGTTTCCTGAGTACTTAATACTCAA-TCC  Raphanus raphanistrum subsp. maritimus
FD941146       --> ..................................................  Raphanus sativus var. oleiformis
EV525951       --> AATTTATTGGGTCTTGATTTTTGTTTCCT.....................  Raphanus raphanistrum subsp. maritimus
EX771732       --> AATTTATTGTGTCTTGATTTT-GTTTCCTGAGTACTTAATACTCAA-TCC  Raphanus raphanistrum subsp. landra
EY924347       --> AATTTATTGTGTCTTGATTTT-GTTTCCTGAGTACTTAATACTCAAATCC  Raphanus raphanistrum subsp. landra
EY933083       --> ..................................................  Raphanus sativus var. oleiformis
EY931488       --> AATTTATTGTGTCTTGATTTT-GTTTCCTGAGTACT-AATACTCAA-TCC  Raphanus sativus var. oleiformis
EV551570       --> AATTTATTGTGTCTTGATTTTTGTTTCCTGAGTACTTAATACTCAA-TCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX889552       --> ..................................................  Raphanus sativus var. oleiformis
FD557879       --> ..................................................  Raphanus raphanistrum subsp. landra
FD973596       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY430388       --> AATTTATTGGGTCTTGATTTTTGTTTCCTGAGTACTTAATACTCAAATCC  Raphanus sativus cv GSK3-1
FY432457       --> AATTTATTGGGTCTTGATTTTTGTTTCCTGAGTACTTAATACTCAAATCC  Raphanus sativus cv GSK3-1
FY433373       --> AATTTATTGGGTCTTGATTTTTGTTTCCTGAGTACTTAATACTCAAATCC  Raphanus sativus cv GSK3-1
FD981113       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY929902       --> ..................................................  Raphanus sativus var. oleiformis

               801    -    851
UN21421        --> CTGAATCTGAATGTGTTTCAAGTTTTTACCCCCAAAACAATGGTAATTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546645       <-- CTGAATCTGAATGTGTTTCAAGTTTTTACCCCCAAAAC............
FY438426       <-- ..................................................
EY927438       <-- CTGAATCTGAATGTGTTTCAAGTTTTTACCCCCAAAACAATGGTAATTTC
EV531541       <-- CTGAATCTGAATGTGTTTCAAGTTTTTACCCCCAAAACAATGGTAATTTC
EV530557       <-- CTGAATCTGAATGTGTTTCAAGTTTTTACCCCg.................
EX775840       <-- CTGAATCTGAATGTGTTTCAAGTTTTTACCCCCAAAACAATGGTAATTTC
EY926222       <-- ..................................................
EX893254       <-- CTGAATCTGAATGTGTTTCAAGTTTTTACCCCCAAAACAATGGTAA....
EY920017       <-- CTGAATCTGAATGTGTTTCAAGTTTTTACCCCCAAAACAATGGTAATTTC
FD553901       <-- CTGAATCTGAATGTGTTTCAAGTTTTTACCCCCAAAACAATGGTAATTTC
EV527240       --> CTGAATCTGA-TGTGTTTCAAGTTTTTA......................
FD941146       --> ..................................................
EV525951       --> ..................................................
EX771732       --> CTGAATCTGA-TGTGTTTCAAGTTTTaccc....................
EY924347       --> CTGAATCTGAA.......................................
EY933083       --> ..................................................
EY931488       --> -TGAATCTGA-TGTGTTTCA-GTTTT-ACCCCaaa...............
EV551570       --> CTGAATCTGA-TGTGTTTCA..............................
EX889552       --> ..................................................
FD557879       --> ..................................................
FD973596       --> ..................................................
FY430388       --> CTGAATCTGAATGTGTTTCAAGTTTTTACCCCCAAAACAATGGTAATTTC
FY432457       --> CTGAATCTGAATGTGTTTCAAGTTTTTACCCCCAAAACAATGGTAATTTC
FY433373       --> CTGAATCTGAATGTGTTT................................
FD981113       --> ..................................................
EY929902       --> ..................................................

               851    -    901
UN21421        --> TTGTGTATGCATTGGCCTTGCCTCAACCAAATAAATATTAAATTTAAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV546645       <-- ..................................................
FY438426       <-- ..................................................
EY927438       <-- TTGTGT............................................
EV531541       <-- TTGGGTATGCATTGGCCTTGCCTCAACCAAATAAATATT...........
EV530557       <-- ..................................................
EX775840       <-- TTGTGc............................................
EY926222       <-- ..................................................
EX893254       <-- ..................................................
EY920017       <-- TTGTGTATGCATTGGCCTTGCCTCAACCAAATAAATATTAAATTTAAATT
FD553901       <-- TTGTGTATGCATTGGCCTTGCCTCAACCAAATAAAT..............
EV527240       --> ..................................................
FD941146       --> ..................................................
EV525951       --> ..................................................
EX771732       --> ..................................................
EY924347       --> ..................................................
EY933083       --> ..................................................
EY931488       --> ..................................................
EV551570       --> ..................................................
EX889552       --> ..................................................
FD557879       --> ..................................................
FD973596       --> ..................................................
FY430388       --> TTGTGTATGCATTGGC..................................
FY432457       --> TTGTGTATGCATTGGCCTTGC.............................
FY433373       --> ..................................................
FD981113       --> ..................................................
EY929902       --> ..................................................

               901    -    951
UN21421        --> CATATCGC
                   ~~~~~~~~
EV546645       <-- ........
FY438426       <-- ........
EY927438       <-- ........
EV531541       <-- ........
EV530557       <-- ........
EX775840       <-- ........
EY926222       <-- ........
EX893254       <-- ........
EY920017       <-- CATATCGC
FD553901       <-- ........
EV527240       --> ........
FD941146       --> ........
EV525951       --> ........
EX771732       --> ........
EY924347       --> ........
EY933083       --> ........
EY931488       --> ........
EV551570       --> ........
EX889552       --> ........
FD557879       --> ........
FD973596       --> ........
FY430388       --> ........
FY432457       --> ........
FY433373       --> ........
FD981113       --> ........
EY929902       --> ........