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Alignment for radish unigene UN21438

               1      -     51
UN21438        --> GCTGCGGAACCGCCGAAGAAGGCGACCAAGAAGAATAGGGTTTGGGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- ..................................................
EX900042       <-- ..................................................
FD945090       <-- ..................................................
FD960645       <-- ..................................................
FD976468       <-- ..................................................
EY894319       <-- ..................................................
EY898192       --> GCTGCGGAACCGCCGAAGAAGGCGACCAAGAAGAATAGGGTTTGGGATGA
FD964715       --> ..................................................
FD949437       --> ..................................................
FD549940       --> ..................................................
FD980601       --> ..................................................
FD562825       --> ..................................................

               51     -    101
UN21438        --> TGCGGCTCCTAAACAGGTGAAGTTGGACTTTACTGATTCCGTTGATGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- ..................................................
EX900042       <-- ..................................................
FD945090       <-- ..................................................
FD960645       <-- ..................................................
FD976468       <-- ..................................................
EY894319       <-- ..................................................
EY898192       --> TGCGGCTCCTAAACAGGTGAAGTTGGACTTTACTGATTCCGTTGATGAGA
FD964715       --> ..................................................
FD949437       --> ..................................................
FD549940       --> ..................................................
FD980601       --> ..................................................
FD562825       --> ..................................................

               101    -    151
UN21438        --> GTGGGAACGGTGATCATGTGGATGTTGCGGCTGCTGACCAAGGAGAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- ..................................................
EX900042       <-- ..................................................
FD945090       <-- ..................................................
FD960645       <-- ..................................................
FD976468       <-- ..................................................
EY894319       <-- ..................................................
EY898192       --> GTGGGAACGGTGATCATGTGGATGTTGCGGCTGCTGACCAAGGAGAGAGT
FD964715       --> ..................................................
FD949437       --> ..................................................
FD549940       --> ..................................................
FD980601       --> ..................................................
FD562825       --> ..................................................

               151    -    201
UN21438        --> ATGATGGATAAGGAAGAGGTTTTTAGCAGTGATGGTGAAAGTGAAGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- ..................................................
EX900042       <-- ..................................................
FD945090       <-- ..................................................
FD960645       <-- ..................................................
FD976468       <-- ..................................................
EY894319       <-- ..................................................
EY898192       --> ATGATGGATAAGGAAGAGGTTTTTAGCAGTGATGGTGAAAGTGAAGATGA
FD964715       --> ...................TTTTTAGCAGTGATGGTGAAAGTGAAGATGA
FD949437       --> ..................................................
FD549940       --> ..................................................
FD980601       --> ..................................................
FD562825       --> ..................................................

               201    -    251
UN21438        --> TGATGATGACGAACCAAGAAGTGATGAGAAGCCTGAGGCTAAGAAGAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- ..................................................
EX900042       <-- ..................................................
FD945090       <-- ..................................................
FD960645       <-- ..................................................
FD976468       <-- ..................................................
EY894319       <-- ..................................................
EY898192       --> TGATGATGACGAACCAAGAAGTGATGAGAAGCCTGAGGCTAAGAAGAAGG
FD964715       --> TGATGATGACGAACCAAGAAGTGATGAGAAGCCTGAGGCTAAGAAGAAGG
FD949437       --> ..................................................
FD549940       --> ..................................................
FD980601       --> ..................................................
FD562825       --> ..................................................

               251    -    301
UN21438        --> GATGGTTTTCTTCGGTTTTCCAGAGTATTACTGGGAAGGCGAATCTTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- ..................................................
EX900042       <-- ..................................................
FD945090       <-- ..................................................
FD960645       <-- ..................................................
FD976468       <-- ..................................................
EY894319       <-- ..................................................
EY898192       --> GATGGTTTTCTACGGTTTTCCAGAGTATTACTGGGAAGGCGAATCTTGAA
FD964715       --> GATGGTTTTCTTCGGTTTTCCAGAGTATTACTGGGAAGGCGAATCTTGAA
FD949437       --> ..................................................
FD549940       --> ..................................................
FD980601       --> ..................................................
FD562825       --> ..................................................

               301    -    351
UN21438        --> AGGACAGACCTTGAACCGGCCTTGAAAGCTCTGAAGGAACGGCTCATGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- ..................................................
EX900042       <-- ..................................................
FD945090       <-- ..................................................
FD960645       <-- ..................................................
FD976468       <-- ..................................................
EY894319       <-- ..................................................
EY898192       --> AGGACAGACCTTGAACCGGCCTTGAAAGCTCTGAAGGAACGGCTCATGAC
FD964715       --> AGAACAGACCTTGAACCGGCCTTGAAAGCTCTGAAGGAACGGCTCATGAC
FD949437       --> ..................................................
FD549940       --> ..................................................
FD980601       --> ..................................................
FD562825       --> ..................................................

               351    -    401
UN21438        --> CAAGAATGTGGCTGAAGAGATAGCTGAGAAGCTTTGTGAATCAGTGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- ..................................................
EX900042       <-- ..................................................
FD945090       <-- ..................................................
FD960645       <-- ..................................................
FD976468       <-- ..................................................
EY894319       <-- ..................................................
EY898192       --> CAAGAATGTGGCTGAAGAGATAGCTGAGAAGCTTTGTGAATCAGTGGAAG
FD964715       --> CAAGAATGTGGCTGAAGAGATAGCTGAGAAGCTTTGTGAATCAGTGGAAG
FD949437       --> ....................................gGAATCGGTGGAAG
FD549940       --> ............................................gGGAAG
FD980601       --> ..................................................
FD562825       --> ..................................................

               401    -    451
UN21438        --> CAAGTCTTGAAGGAAAGAAGTTGGCATCGTTCACGAGGATCTCCTCAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- ..................................................
EX900042       <-- ..................................................
FD945090       <-- ..................................................
FD960645       <-- ..................................................
FD976468       <-- ..................................................
EY894319       <-- ..................................................
EY898192       --> CAAGTCTTGAAGGAAAGAAGTTGGCATCGTTCACGAGGATCTCCTCAACC
FD964715       --> CAAGTCTTGAAGGAAAGAAGTTGGCATCGTTCACGAGGATCTCCTCAACC
FD949437       --> CAAGTCTTGAAGGAAAGAAGTTGGCATCGTTCACGAGGATCTCCTC---C
FD549940       --> CAAGTCTTGAAGGAAAGAAGTTGGCATCGTTCACGAGGATCTCCTCAACC
FD980601       --> ..................................................
FD562825       --> ..................................................

               451    -    501
UN21438        --> GTTCAGGGAGCAATGGAGGATGCTCTGATTCGCATATTGACTCCGAGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- ..................................................
EX900042       <-- ..................................................
FD945090       <-- ..................................................
FD960645       <-- ..................................................
FD976468       <-- ..................................................
EY894319       <-- ..................................................
EY898192       --> GTTCAGGGAGCAATGGAGGATGCTCTGATTCGCATATTGACTCCGAGACG
FD964715       --> GTTCAGGGAGCAATGGAGGATGCTCTGATTCGCATATTGACTCCGAGACG
FD949437       --> GTTCAGGGAGCAATGGAGGATGCTCTGATTCGCATATTGACTCCGAGACG
FD549940       --> GTTCAGGGAGCAATGGAGGATGCTCTGATTCGCATATTGACTCCGAGACG
FD980601       --> ..................................................
FD562825       --> ..................................................

               501    -    551
UN21438        --> CTCCATTGATATTATGCGAGACGTTCATGCTGCCAAAGAACAGAGGAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- ..................................................
EX900042       <-- ..................................................
FD945090       <-- ..................................................
FD960645       <-- ..................................................
FD976468       <-- ..................................................
EY894319       <-- ..................................................
EY898192       --> CTCCATTGATATTATGCGAGACGTTCATGCTGCCAAAGAACAGAGGAGGC
FD964715       --> CTCCATTGATATTATGCGAGACGTTCATGCTGCCAAAGAACAGAGGAGGC
FD949437       --> CTCCATTGATATAATGAGAGACGTTCATGCTGCCAAAGAACAGAGGAGGC
FD549940       --> CTCCATTGATATAATGAGAGACGTTCATGCTGCCAAAGAACAGAGGAGGC
FD980601       --> ..................................................
FD562825       --> ..................................................

               551    -    601
UN21438        --> CTTATGTGGTCGTGTTTGTTGGAGTCAACGGAGTTGGGAAATCCACCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- ....TGTGGTCGTGTTTGTTGGAGTCAACGGAGTTGGGAAATCCACCAAT
EX900042       <-- .....................GAGTCAACGGAGTTGGGAAATCCACCAAT
FD945090       <-- ..................................................
FD960645       <-- ..................................................
FD976468       <-- ..................................................
EY894319       <-- ..................................................
EY898192       --> CTTATGTGGTCGTGTTTGTTGGAGTCAACGGAGTTGGGAAATCCACCAAT
FD964715       --> CTTATGTGGTCGTGTTTGTTGGAGTCAACGGAGTTGGGAAATCCACCAAT
FD949437       --> CTTATGTGGTCGTGTTTGTTGGAGTCAACGGAGTTGGGAAATCCACCAAT
FD549940       --> CTTATGTGGTCGTGTTTGTTGGAGTCAACGGAGTTGGGAAATCCACCAAT
FD980601       --> ..................................................
FD562825       --> ..................................................

               601    -    651
UN21438        --> CTTGCCAAAGTTGCGTATTGGCTTCAGCAGCATAAGGTCAGTGTAATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- CTTGCCAAAGTTGCGTATTGGCTTCAGCAGCATAAGGTCAGTGTAATGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900042       <-- CTAGCCAAAGTGGCGTATTGGCTTCAGCAGCATAAGGTCAGTGTAATGAT  Raphanus sativus cv Early Scarlet Globe
FD945090       <-- ...............TATTGGCTTCAGCAGCATAAGGTCAGTGTAATGAT  Raphanus sativus cv Early Scarlet Globe
FD960645       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD976468       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894319       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY898192       --> CTGGCCAAAGTGGCGTATTGGCTTCAGCAGC...................  Raphanus raphanistrum subsp. maritimus
FD964715       --> CTGGCCAAAGTGGCGTATTGGCTTCAGCAGCATAAGGTCAGTGTAATGAT  Raphanus raphanistrum subsp. maritimus
FD949437       --> CTTGCCAAAGTTGCGTATTGGCTTCAGCAGCATAAGGTCAGTGTAATGAT  Raphanus sativus cv Early Scarlet Globe
FD549940       --> CTTGCCAAAGTTGCGTATTGGCTTCAGCAGCATAAGGTCAGTGTAATGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980601       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562825       --> ..................................................  Raphanus sativus var. oleiformis

               651    -    701
UN21438        --> GGCTGCTTGTGACACATTCCGTTCTGGTGCTGTTGAGCAGTTGAGGACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- GGCTGCTTGTGACACATTCCGTTCTGGTGCTGTTGAGCAGTTGAGGACTC
EX900042       <-- GGCTGCTTGTGACACATTCCGTTCTGGTGCCGTTGAGCAGTTGAGGACTC
FD945090       <-- GGCTGCTTGTGACACATTCCGTTCTGGTGCTGTTGAGCAGTTGAGGACTC
FD960645       <-- ..................................................
FD976468       <-- ..................................................
EY894319       <-- ..................................................
EY898192       --> ..................................................
FD964715       --> GGCTGCTCGTGACACATTCCGTTCTGGTGCTGTTGAGCAGTTGAGGACTC
FD949437       --> GGCTGCTTGTGACACATTCCGTTCTGGTGCTGTTGAGCAGTTGAGGACTC
FD549940       --> GGCTGCTTGTGACACATTCCGTTCTGGTGCTGTTGAGCAGTTGAGGACTC
FD980601       --> ..................................................
FD562825       --> ..................................................

               701    -    751
UN21438        --> ATGCTCGTAGGTTACAGATACCGATCTTTGAGAAGGGTTATGAGAAGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- ATGCTCGTAGGTTACAGATACCGATCTTTGAGAAGGGTTATGAGAAGGAT
EX900042       <-- ATGCTCGTAGGTTACAGATACCTATATTTGAGAAGGGTTATGAAAAGGAT
FD945090       <-- ATGCTCGTAGGTTACAGATACCGATCTTTGAGAAGGGTTATGAGAAGGAT
FD960645       <-- ........AGGTTACAGATACCGATATTTGAGAAGGGTTATGAAAAGGAT
FD976468       <-- .................................................g
EY894319       <-- ..................................................
EY898192       --> ..................................................
FD964715       --> ATGCTC............................................
FD949437       --> ATGCTCGTAGGTTACAGATACCGATCTTTGAGAAGGGTTATGAGAAGGAT
FD549940       --> ATGCTCGTAGGTTACAGATACCGATCTTTGAGAAGGGTTATGAGAAGGAT
FD980601       --> .................................................g
FD562825       --> ..................................................

               751    -    801
UN21438        --> CCAGCAGTAGTTGCAAAGGAAGCCATACAGGAAGCAACTCGGAATGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- CCAGCAGTAGTTGCAAAGGAAGCCATACAGGAAGCAACCCGGAACGGATC
EX900042       <-- CCAGCAGTAGTTGCAAAGGAAGCCATACAGGAAGCAACTCGGAATGGATC
FD945090       <-- CCAGCAGTAGTTGCAAAGGAAGCCATACAGGAAGCAACTCGGAACGGATC
FD960645       <-- CCAGCAGTAGTTGCTAAGGAAGCCATACAGGAAGCAACTCGGAATGGATC
FD976468       <-- CCAGCAGTAGTTGCTAAGGAAGCCATACTGGAAGCAACTCGGAATGGATC
EY894319       <-- ..................................................
EY898192       --> ..................................................
FD964715       --> ..................................................
FD949437       --> CCAGCAGTAGTTGCAAAGGAAGCCATACAGGAAGCAACTCGGAACGGATC
FD549940       --> CCAGCAGTAGTTGCAAAGGAAGCCATACAGGAAGCAACCCGGAACGGATC
FD980601       --> CCAGCAGTAGTTGCTAAGGAAGCCATACTGGAAGCAACTCGGAATGGATC
FD562825       --> ..................................................

               801    -    851
UN21438        --> GGATGTTGTTCTTGTTGACACAGCTGGTCGGATGCAGGATAATGAACCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- GGATGTTGTTCTTGTTGACACAGCTGGTCGGATGCAGGATAATGAACCTT
EX900042       <-- GGATGTTGTTCTTGTTGACACAGCTGGTCGGATGCAGGATAATGAACCTT
FD945090       <-- GGATGTTGTTCTTGTTGACACAGCTGGTCGGATGCAGGATAATGAACCTT
FD960645       <-- CGATGTTGTTCTTGTTGACACAGCTGGTCGGATGCAGGATAATGAGCCTT
FD976468       <-- GGATGTTGTTCTTGTTGACACAGCTGGTCGGATGCAGGATAATGAACCTT
EY894319       <-- ..................................................
EY898192       --> ..................................................
FD964715       --> ..................................................
FD949437       --> GGATGTTGTTCTTGTTGACACAGCTGGTCGGATGCAGGATAATGAACCTT
FD549940       --> GGATGTTGTTCTTGTTGACACAGCTGGTCGGATGCAGGATAATGAACCTT
FD980601       --> GGATGTTGTTCTTGTTGACACAGCTGGTCGGATGCAGGATAATGAACCTT
FD562825       --> ..................................................

               851    -    901
UN21438        --> TGATGAGAGCTCTCTCAAAGCTCATTAACCTCAATAAACCAGACCTGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- TGACGAGAGCTCTCTCAAAGCTCATTAACCTCAATAAACCAGACCTGGTC
EX900042       <-- TGATGAGAGCTCTCTCAAAGCTCATTAACCTCAACAAACCAGACCTGGTC
FD945090       <-- TGATGAGAGCTTTTTCAAAGCTCATTAACCTCAATAAACCAGACCTGGTC
FD960645       <-- TGATGAGAGCTCTCTCAAAGCTCATTAACCTCAATAAACCAGACCTGGTC
FD976468       <-- TGATGAGAG----CTCAAAGCTCATTAACCTCAACAAACCAGACCTGGTC
EY894319       <-- ..................................................
EY898192       --> ..................................................
FD964715       --> ..................................................
FD949437       --> TGATGAGAGCTCTCTCAAAGCTCATTAACCTCAATAAACCAGACCTGGTC
FD549940       --> TGACGAGAGCTCTCTCAAAGCTCATTAACCTCAATAAACCAGACCTGGTC
FD980601       --> TGATGAGAGCTC----AAAGCTCATTAACCTCAACAAACCAGACCTGGTC
FD562825       --> ..................................................

               901    -    951
UN21438        --> TTGTTTGTCGGTGAAGCTCTTGTTGGAAACGATGCAGTTGATCAGCTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- TTGTTTGTCGGTGAAGCTCTTGTTGGAAACGATGCAGTTGATCAGCTCTC
EX900042       <-- TTGTTTGTCGGTGAAGCTCTTGTTGGAAACGATGCAGTTGATCAGCTCTC
FD945090       <-- TTGTTTGTTGGTGAAGCTCTTGTTGGAAACGATGCAGTTGATCAGCTCTC
FD960645       <-- TTGTTTGTCGGTGAAGCTCTTGTTGGAAACGATGCAGTTGATCAGCTCTC
FD976468       <-- TTGTTTGTCGGTGAAGCTCTTGTTGGAAACGATGCAGTTGATCAGCTCTC
EY894319       <-- ..........................AAACGATGCAGTTGATCAGCTCTC
EY898192       --> ..................................................
FD964715       --> ..................................................
FD949437       --> TTGTTTGTTGGTGAAGCTCTTGTTGGAAACGATGCAGTTGATCAGCTCTC
FD549940       --> TTGTTTGTCGGTGAAGCTCTTGTTGGAAACGATGCAGTTGATCAGCTCTC
FD980601       --> TTGTTTGTCGGTGAAGCTCTTGTTGGAAACGATGCAGTTGATCAGCTCTC
FD562825       --> ..................................................

               951    -   1001
UN21438        --> AAAGTTTAATCAGAAACTTTCGGATCTCTCCAATTCTGGGACCACAAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- AAAGTTTAATCAGAAACTTTCGGATCTCTCCAATTCTGGGACCACAAGAT
EX900042       <-- AAAGTTTAATCAGAAACTTTCGGATCTCTCCAATTCTGGGACCACAAGAT
FD945090       <-- AAAGTTTAATCAGAAACTTTCGGATCTCTCCAATTCTGGGACCACAAGAT
FD960645       <-- AAAGTTTAATCAGAAACTTTCGGATCTCTCCAATTCTGGGACCACAAGAT
FD976468       <-- AAAGTTTAATCAGAAACTTTCGGATCTCTCCAATTCTGGGACCACAAGAT
EY894319       <-- AAAGTTTAATCAGAAACTTTCGGATCTCTCCAATTCTGGGACCACAAGAT
EY898192       --> ..................................................
FD964715       --> ..................................................
FD949437       --> AAAGTTTAATCAGAA-CTTTCGGATCTCTCCAATTCTGGGACCACAAGAT
FD549940       --> AAAGTTTAATCAGAAACTTTCGGATCTCTCCAATTCTGGGACCACAAGAT
FD980601       --> AAAGTTTAATCAGAAACTTTCGGATCTCTCCAATTCTGGGACCACAAGAT
FD562825       --> ..................................................

               1001   -   1051
UN21438        --> TGATTGATGGAATCTTACTGACAAAGTTCGATACCATTGACGATAAGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- TGATTGATGGAATCTTACTGACAAAGTTCGATACCATTGACGATAAGGTT
EX900042       <-- TGATTGATGGAATCTTACTGACAAAGTTCGATACCATTGACGATAAGGTT
FD945090       <-- TGATTGATGGAATCTTACTGACAAAGTTCGATACCATTGACGATAAGGTT
FD960645       <-- TGATTGATGGAATCTTACTGACAAAGTTCGATACCATTGACGATAAGGTT
FD976468       <-- TGATCGATGTAATCTTACTGACAAAGTTCGATACCATTGACGATAAGGTT
EY894319       <-- TGATTGATGGAATCTTACTGACAAAGTTCGATACCATTGACGATAAGGTT
EY898192       --> ..................................................
FD964715       --> ..................................................
FD949437       --> TGATTGATGGAATCTTACTGACAAAGTTCGATACCATTGACGATAAGGTT
FD549940       --> TGATTGATGGAATCTTACTGACAAAGTTCGATACCATTGACGA.......
FD980601       --> TGATCGATGTAATCTTACTGACAAAGTTCGATACCATTGACGATAAGGTT
FD562825       --> ..................................................

               1051   -   1101
UN21438        --> GGAGCAGCGTTATCGATGGTTTACATATCGGGAGCACCGGTTATGTTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- GGAGCAGCGTTATCGATGGTTTACATATCGGGAGCACCGGTTATGTTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900042       <-- GGAGCAGCATTATCGATGGTTTACATATCGGGGGCACCGGTTATGTTCGT  Raphanus sativus cv Early Scarlet Globe
FD945090       <-- GGAGCAGCATTATCGATGGTTTACATATCGGGAGCACCGGTTATGTTCGT  Raphanus sativus cv Early Scarlet Globe
FD960645       <-- GGAGCAGCGTTATCGATGGTTTACATATCGGGAGCACCGGTTATGTTCGT  Raphanus raphanistrum subsp. maritimus
FD976468       <-- GGAGCAGCGTTATCGATGGTTTACATATCGGGAGCACCGGTTATGTTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894319       <-- GGAGCAGCGTTATCGGTGGTTTACATATCGGGAGCACCGGTTATGTTCGT  Raphanus raphanistrum subsp. maritimus
EY898192       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD964715       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD949437       --> GGAGCAGCATTATCGATGGTTTACATATCGGGAGCACCGGTTATGTTCGT  Raphanus sativus cv Early Scarlet Globe
FD549940       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980601       --> GGAGCAGCGTTATCGATGGTTTACATATCGGGAGCACCGGTTATGTTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562825       --> ..................................................  Raphanus sativus var. oleiformis

               1101   -   1151
UN21438        --> GGGTTGTGGCCAGTCTTACACTGACCTGAAGAAGCTCAATGTCAAAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- GGGTTGTGGCCAGTCTTACACTGACCTGAAGAAGCTCAATGTCAAAGCCA
EX900042       <-- TGGCTGTGGCCAGTCTTACACTGACCTGAAGAAGCTCAATGTCAAAGCCA
FD945090       <-- GGGTTGTGGCCAGTCTTACACTGACCTGAAGAAGCTCAATGTCAAAGCCA
FD960645       <-- GGGTTGTGGCCAGTCTTACACTGACCTGAAGAAGCTCAATGTCAAAGCCA
FD976468       <-- GGGTTGTGGCCAGTCTTACACTGACCTGAAGAAGCTCAATGTCAAAGCCA
EY894319       <-- GGGTTGTGGCCAGTCTTACACTGACCTGAAGAAGCTCAATGTCAAAACCA
EY898192       --> ..................................................
FD964715       --> ..................................................
FD949437       --> GGGTTGTGGCCAGTCTTACACTGACCTGAAGAAGCTCA-TGTCAAAGCCA
FD549940       --> ..................................................
FD980601       --> GGGTTGTGGCCAGTCTTACACTGACCTGAAGAAGCTCAATGTCAAAGCCA
FD562825       --> ......................................gTGTCAAAGTCA

               1151   -   1201
UN21438        --> TAGTCAAGACACTTCTCAAATGATCTTCTCATCACCATCATCATCA---C
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- TAGTCAAGACACTTCTCAAATGATCTTCTCATCACCATCATCATCATCAC
EX900042       <-- TAGTCAAGACACTTCTCAAATGATCTTCTCATCTCCATCATCATCA---C
FD945090       <-- TAGTCAAGACACTTCTCAAATGATCTTCTCATCACCATCATCATCA---C
FD960645       <-- TAGTCAAGACACTTCTCAAATGATCTTCTCATCACCATCATCATCA---C
FD976468       <-- TAGTCAAGACACTTCTCAAATGATCTTCTCATCACCATCAT---CA---C
EY894319       <-- TAGTCAAGACACTTCTCAAATGATCTTCTCATCACCATCATCATCA---C
EY898192       --> ..................................................
FD964715       --> ..................................................
FD949437       --> TAGTCAAGACACTTCTCAA-TGATC.........................
FD549940       --> ..................................................
FD980601       --> TAGTCAAGACACTTCTCAAATGATCTTCTCATCACCATCATCA------C
FD562825       --> TAGTCAAGACACTTCTCAAATGATCTTCTCATCACCATCATCATCA---C

               1201   -   1251
UN21438        --> TATCTTCATCAACCAA-CCATCATTTCTATCAATGTCTTATCCATCATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- TATCTTCATCAACCAAATCATCATTTCTATCAATGTCTTATCCATCATAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900042       <-- TATCTTCACCAACCA--CCATCATTTCTATCAATGTATTATCCATCATAC  Raphanus sativus cv Early Scarlet Globe
FD945090       <-- TATCTTCATCAAC-AA-CCATCATTTCTATCAATGTCTTATCCATCATAC  Raphanus sativus cv Early Scarlet Globe
FD960645       <-- TATCTTCATCAACCAAACCATCATTTCTATCAATGTCTTATCCATCATAC  Raphanus raphanistrum subsp. maritimus
FD976468       <-- TATCTTCATCAACCA--CCATCATTTCTATCAATGTCTTATCCATCATAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894319       <-- TATCTTCATCAACCAAACCATCATTTCTATCAATGTCTTATCCATCATAC  Raphanus raphanistrum subsp. maritimus
EY898192       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD964715       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD949437       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD549940       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980601       --> TATCTTCATCAACCA--CCATCATTTCTATCAATGTCTTATCCATCATAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562825       --> TATCTTCATCAAC-AA-CCATCATTTCTATCAATGTCTTATCCATCATAC  Raphanus sativus var. oleiformis

               1251   -   1301
UN21438        --> TTTATCTTGAGTTTTTGTT-ATGGTTTTTGATGTTGTTTCCTTAAAACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- TTTATCTTGAGTTTTTGTT-ATGGTTTTTGATGTTGTTTCCTTAAAACTC
EX900042       <-- TTTATCTTGAGTTCTTGTTTATGGTTTTTGATGTTGTTTCCTTAAAACCC
FD945090       <-- TTTATCTTGAGTTTTTGTC-ATGGTTTTTGATGTTGTTACCTTAAAACTC
FD960645       <-- TTTATCTTGAGTTTTTGTT-ATGGTTTTTGATGTTGTTTCCTTAAAACTC
FD976468       <-- TTTATCTTGAGTTCTTGTTTATGGTTTTTGATGTTGTTTCCTTAAAACTC
EY894319       <-- TTTATCTTGAGTTTTTGTT-ATGGTTTTTGATGTTGTTTCCTTAAAACTC
EY898192       --> ..................................................
FD964715       --> ..................................................
FD949437       --> ..................................................
FD549940       --> ..................................................
FD980601       --> TTTATCTTGAGTTCTTGTTTATGGTTTTTGATGTTGTTTCCTTAAAACTC
FD562825       --> TTTATCTTGAGTTTTTGTT-ATGGTTTTTGATGTTGTTTCCTTAAAACTC

               1301   -   1351
UN21438        --> GAAAATACTATTTCGTTGGAGTCGCTACTATCCCATCCCATGTCTTTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- GAAAATACTATTTCGTTGGAGTCGCTACc.....................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900042       <-- GAAAATACTATTTCGCTGGAGTCGCTACTATCCCATC---CCTCTTTC--  Raphanus sativus cv Early Scarlet Globe
FD945090       <-- GAAAATACTATTTCGCTGGAGTCGCTACTATCCCATTCCATGTCTTTATA  Raphanus sativus cv Early Scarlet Globe
FD960645       <-- GAAAATACTATTTCGTTGGAGTCGCTACTATCCCATCCCATGTCTTTATA  Raphanus raphanistrum subsp. maritimus
FD976468       <-- GAAAATACTATTTCGTTGGAGTCGCTACTATCACATCCCATGTCTTTATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894319       <-- GAAAATACTATTTCGTTGGAGTCGCTACTATCCCATCCCATGTCTTTATA  Raphanus raphanistrum subsp. maritimus
EY898192       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD964715       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD949437       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD549940       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980601       --> GAAAATACTATTTCGTTGGAGTCGCTACTATCACATCCCATGTCTTTATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562825       --> GAAAATACTATTTCGCTGGAGTCGCTACTATCCCATCCCATGTCTTTATA  Raphanus sativus var. oleiformis

               1351   -   1401
UN21438        --> ATATGATGCAACTTCTGTTTTGAACT.
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545949       <-- ...........................
EX900042       <-- -TATGATGCAACTTCTGTTTcg.....
FD945090       <-- ATATGATGCAACTTCTGTTTTGAACc.
FD960645       <-- ATATGATGCAACTTCTGTTTTGAACcg
FD976468       <-- ATATGATGCAACTTCTGTTTTGAACT.
EY894319       <-- ATATGATGCAACTTCTGTTTTGAACT.
EY898192       --> ...........................
FD964715       --> ...........................
FD949437       --> ...........................
FD549940       --> ...........................
FD980601       --> ATATGATGCAACTTCTGTTTTGAACT.
FD562825       --> ATATGATGCAACTTCTGTTTTGAACT.