-1     -     49
UN21451        --> ..GGATTTTACATATACAAGAAAGACAATAA-TAATAATGAGTGCGAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571953       <-- ..................................................
EY928295       <-- ..................................................
EY912530       <-- ..................................................
FD982614       <-- ..................................................
FD976029       <-- ..................................................
EW738964       <-- ..................................................
FD574977       <-- ..................................................
EY944240       <-- ..................................................
EX755614       --> ..GGATTTTACATATACAAGAAAGACAATAA-TAATAATGAGTGCGAACT
EY948556       --> ggtcATTTTACATATACAAGAAAGACAATAA-TAATAATGAGTGCGAACT
EY916933       --> ...........ggATACAAGAAAGACAATAA-TAATAATGAGTGCGAACT
EV565913       --> ...........ggattCAAGAAAGACATTAA-TACTAATAAGTGCGAAGT
FD550690       --> ...........ggattcgAGAAAGACAATAAACTCTAATAAGTGCGAAGT
EW735247       --> .......................GACAATAA-TAATAATGAGTGCGAACT
EY905096       --> .......................GACAATAA-TAATAATGAGTGCGAACT
EY909007       --> .......................GACAATAA-TAATAATGAGTGCGAACT
EY932605       --> .......................GACAATAA-TAATAATGAGTGCGAACT
FD548615       --> ................cgagaaacacaataaactcTAATAAGTGCGAAGT
FD571083       --> ......................agacaataaactcTAATAAGTGCGAAGT
EV566934       --> ..................................................
FD980084       --> ..................................................
EV534861       --> ..................................................
EW734668       --> ..................................................

               49     -     99
UN21451        --> TGAAAACAGTTGTTGATCTT-AAAGATATGGCGGACGAACTGGTTCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571953       <-- ..................................................
EY928295       <-- ..................................................
EY912530       <-- ..................................................
FD982614       <-- ..................................................
FD976029       <-- ..................................................
EW738964       <-- ..................................................
FD574977       <-- ..................................................
EY944240       <-- ..................................................
EX755614       --> TGAAAACAGTTGTTGATCTT-AAAGATATGGCGGACGAACTGGTTCTTCT
EY948556       --> TGAAAACAGTTGTTGATCTT-AAAGATATGGCGGACGAACTGGTTCTTCT
EY916933       --> TGAAAACAGTTGTTGGTCTT-AAAGATATGGCGGACGAACTGGTTCTTCT
EV565913       --> TGATAACAGTTGTTGATCTTCAAAAAAATGGCGGACGAATTGGTTCTTCT
FD550690       --> TGAAAACAGTTGTTGATCTT-AAAACAATGGCGGACGAACTGGTTCTTCT
EW735247       --> TGAAAACAGTTGTTGGTCTT-AAAGATATGGCGGACGAACTGGTTCTTCT
EY905096       --> TGAAAACAGTTGTTGATCTT-AAAGATATGGCGGACGAACTGGTTCTTCT
EY909007       --> TGAAAACAGTTGTTGATCTT-AAAGATATGGCGGACGAACTGGTTCTTCT
EY932605       --> TGAAAACAGTTGTTGATCTT-AAAGATATGGCGGACGAACTGGTTCTTCT
FD548615       --> TGAAAACAGTTGTTGATCTT-AAAACAATGGCGGACGAACTGGTTCTTCT
FD571083       --> TGAAAACAGTTGTTGATCTT-AAAACAATGGCGGACGAACTGGTTCTTCT
EV566934       --> ..................................................
FD980084       --> ..................................................
EV534861       --> ..................................................
EW734668       --> ..................................................

               99     -    149
UN21451        --> TGATTTTTGGCCAAGCATGTTCGGGATGAGGACGAAGATGGCTTTGGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571953       <-- ..............ggATGTTCGGGATGAGGACGAAGATGGCTTTGGCTG
EY928295       <-- .................TGTTCGGGATGAGGACGAAGATGGCTTTGGCTG
EY912530       <-- ...............................................CTG
FD982614       <-- ................................................TG
FD976029       <-- ..................................................
EW738964       <-- ..................................................
FD574977       <-- ..................................................
EY944240       <-- ..................................................
EX755614       --> TGATTTTTGGCCAAGCATGTTCGGGATGAGGACGAAGATGGCTTTGGCTG
EY948556       --> TGATTTTTGGCCAAGCATGTTCGGGATGAGGACGAAGATGGCTTTGGCTG
EY916933       --> TGATTTTTGGCCAAGCATGTTCGGGATGAGGACGAAGATGGCTTTGGCTG
EV565913       --> TGATTTTTGGCCAAGCATGTTCGGGATGAGGACGAAGATGGCTTTGGCTG
FD550690       --> TGATTTTTGGCCAAGCACGTTCGGGATGAGGACGAAGATGGCTTTGGCTG
EW735247       --> TGATTTTTGGCCAAGCATGTTCGGGATGAGGACGAAGATGGCTTTGGCTG
EY905096       --> TGATTTTTGGCCAAGCATGTTCGGGATGAGGACGAAGATGGCTTTGGCTG
EY909007       --> TGATTTTTGGCCAAGCATGTTCGGGATGAGGACGAAGATGGCTTTGGCTG
EY932605       --> TGATTTTTGGCCAAGCATGTTCGGGATGAGGACGAAGATGGCTTTGGCTG
FD548615       --> TTATTTTTGGCCAAGCATGTTCGGGATGAGGACGAAGATGGCTTTGGCTG
FD571083       --> TGATTTTTGGCCAAGCATGTTCGGGATGAGGACGAAGATGGCTTTGGCTG
EV566934       --> ..............ggATGTTCGGGATGAGGACGAAGATGGCTTTGGCTG
FD980084       --> ............................gGGACGAAGATGGCTTTGGCTG
EV534861       --> ..................................................
EW734668       --> ..................................................

               149    -    199
UN21451        --> AGAAAGGAGTGAGTTATGAGTACATTGAGACAGATCCATGGATTAAGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571953       <-- AGAAAGGAGTGAGTTATGAGTACATTGAGACAGATCCATGGATTAAGACT  Raphanus raphanistrum subsp. landra
EY928295       <-- AGAAAGGAGTGACTTATGAGTACATTGAGACAGATCCATAGATTAAGACT  Raphanus sativus var. oleiformis
EY912530       <-- AGAAAGGAGTGAGTTATGAGTACATCGAGACAGATCCACGGATTAAGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982614       <-- AGAAAGGAGTGAGTTATGAGTACATTGAGACAGATCCATGGATTAAGACT  Raphanus raphanistrum subsp. landra
FD976029       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738964       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD574977       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY944240       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX755614       --> AGAAAGGAGTGACTTATGAGTACATTGAGACAGATCCATGGATTAAGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY948556       --> AGAAAGGAGTGACTTATGAGTACATTGAGACAGATCCATGGATTAAGACT  Raphanus sativus cv Rat-Tail Radish #3870
EY916933       --> AGAAAGGAGTGAGTTATGAGTACATCGAGACAGATCCACGGATTAAGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565913       --> AGAAAGGAGTGAGTTATGAGTACATTGAGACAGATCCATGGATTAAGACT  Raphanus raphanistrum subsp. landra
FD550690       --> AGAAAGGAGTGAGTTATGAGTACATCGAGACAGATCCATGGATTAAGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW735247       --> AGAAAGGAGTGAGTTATGAGTACATCGAGACAGATCCATGGATTAAGACT  Raphanus sativus cv Rat-Tail Radish #3870
EY905096       --> AGAAAGGAGTGACTTATGAGTACATTGAGACAGATCCATGGATTAAGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909007       --> AGAAAGGAGTGACTTATGAGTACATTGAGACAGATCCATGGATTAAGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY932605       --> AGAAAGGAGTGACTTATGAGTACATTGAGACAGATCCATAGATTAAGACT  Raphanus sativus var. oleiformis
FD548615       --> AGAAAGGAGTGAGTTATGAGTACATCGAGACAGATCCATGGATTAAGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD571083       --> AGAAAGGAGTGAGTTATGAGTACATCGAGACAGATCCATGGATTAGGACT  Raphanus sativus cv Early Scarlet Globe
EV566934       --> AGAAAGGAGTGAGTTATGAGTACATTGAGACAGATCCATGGATTAAGACT  Raphanus raphanistrum subsp. landra
FD980084       --> AGAAAGGAGTGAGTTATGAGTACATCGAGACAGATCCATGGATTAAGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV534861       --> ............cTTATGAGTACATTGAGACAGATCCATGGATTAAGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW734668       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870

               199    -    249
UN21451        --> CCTTTACTCATCGAGATGAATCCCATTCACAAGAAGATTCCGGTTCTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571953       <-- CCTTTACTCATCGAAATGAATCCAATTCACAAGAAGATTCCGGTTCTCAT  Raphanus raphanistrum subsp. landra
EY928295       <-- CCTTTACTCATCGAGATGAATCCCATTCACAAGAAGATTCCGGTTCCCAT  Raphanus sativus var. oleiformis
EY912530       <-- CCTTTACTCATCGAGATGAATCCCATTCACAAGAAGATTCCGGTTCTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982614       <-- CCTTTACTCATCGAAATGAATCCAATTCACAAGAAGATTCCGGTTCTCAT  Raphanus raphanistrum subsp. landra
FD976029       <-- ....................TCCAATTCACAAGAAGATTCCGGTTCTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738964       <-- ........................................gGGTTCTCAT  Raphanus sativus cv Rat-Tail Radish #3870
FD574977       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY944240       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX755614       --> CCTTTACTCATCGAGATGAATCCCATTCACAAGAAGATTCCGGTTCTCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY948556       --> CCTTTACTCATCGAGATGAATCCCATTCACAAGAAGATTCCGGTTCTCAT  Raphanus sativus cv Rat-Tail Radish #3870
EY916933       --> CCTTTACTCATCGAGATGAATCCCATTCACAAGAAGATTCCGGTTCTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565913       --> CCTTTACTCATCGAAATGAATCCAATTCACAAGAAGGTTCCGGTTCTCAT  Raphanus raphanistrum subsp. landra
FD550690       --> CCTTTACTCATCGAGATGAATCCAATTCACAAGAAGATTCCGGTTCTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW735247       --> CCTTTACTCATCGAGATGAATCCCATTCACAAGAAGATTCCGGTTCTCAT  Raphanus sativus cv Rat-Tail Radish #3870
EY905096       --> CCTTTACTCATCGAGATGAATCCCATTCACAAGAAGATTCCGGTTCTCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909007       --> CCTTTACTCATCGAGATGAATCCCATTCACAAGAAGATTCCGGTTCTCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY932605       --> CCTTTACTCATCGAGATGAATCCCATTCACAAGAAGATTCCGGTTCCCAT  Raphanus sativus var. oleiformis
FD548615       --> CCTTTACTCATCGAGATGAATCCAATTCACAAGAAGATTCCGGTTCTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD571083       --> CCTTTACTCATCGAGATGAATCCAATTCACAAGAAGATCCCGGTTCTCAT  Raphanus sativus cv Early Scarlet Globe
EV566934       --> CCTTTACTCATCGAAATGAATCCAATTCACAAGAAGATTCCGGTTCTCAT  Raphanus raphanistrum subsp. landra
FD980084       --> CCTTTACTCATCGTGATGAATCCAATTCACAAGAAGATTCCGGTTCTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV534861       --> CCTTTACTCATCGAGATGAATCCCATTCACAAGAAGATTCCGGTTCTCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW734668       --> ........................................gGGTTCTCAT  Raphanus sativus cv Rat-Tail Radish #3870

               249    -    299
UN21451        --> CCACAAAGGTAAACCGATCTGTGAATCTATTATCCAGCTCGAGTACATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571953       <-- CCACAAAGGTAAACCGATTTGTGAATCTCTTATCCAGCTCGAGTACATCG
EY928295       <-- CCACAAAGGTAAACCGATCTGTGAATCTATTATCCAGCTCGAGTACATCG
EY912530       <-- CCACAAAGGTAAACCGATCTGTGAATCTATTATCCAGCTTGAGTACATCG
FD982614       <-- CCACAAAGGTAAACCGATCTGTGAATCTCTTATCCAGCTCGAGTACATCG
FD976029       <-- CCACAAAGGTAAACCGATCTGTGAATCTATTATCCAGCTCGAGTACATCG
EW738964       <-- CCACAAAGGTAAACCGATCTGTGAATCTATTATCCAGCTTGAGTACATCG
FD574977       <-- ............................................ACATCG
EY944240       <-- ..................................................
EX755614       --> CCACAAAGGTAAACCGATCTGTGAATCTATTATCCAGCTCGAGTACATCG
EY948556       --> CCACAAAGGTAAACCGATCTGTGAATCTATTATCCAGCTCGAGTACATCG
EY916933       --> CCACAAAGGTAAACCGATCTGTGAATCTATTATCCAGCTTGAGTACATCG
EV565913       --> CCACAAAGGTAAACCGATCTGTGAATCTCTTATCCAGCTCGAGTACATCG
FD550690       --> CCACAAAGGTAAACCGATCTGTGAATCTATTATCCAGCTCGAGTACATCG
EW735247       --> CCACAAAGGTAAACCGATCTGTGAATCTATTATCCAGCTTGAGTACATCG
EY905096       --> CCACAAAGGTAAACCGATCTGTGAATCTATTATCCAGCTCGAGTACATCG
EY909007       --> CCACAAAGGTAA-CCGATCTGTGAATCTATTATCCAGCTCGAGTACATCG
EY932605       --> CCACAAAGGTAAACCGATCTGTGAATCTATTATCCAGCTCGAGTACATCG
FD548615       --> CCACAAAGGTAAACCGATCTGTGAATCTATTATCCAGCTCGAGTACATCG
FD571083       --> CCACAAAGGTAAACCGATCTGTGAATCTATTATCCAGCTCGAGTACATCG
EV566934       --> CCACAAAGGTAAACCGATTTGTGAATCTCTTATCCAGCTCGAGTACATCG
FD980084       --> CCACAAAGGTAAACCGATCTGTGAATCTATTATCCAGCTCGAGTACATCG
EV534861       --> CCACAAAGGTAAACCGATCTGTGAATCTATTATCCAGCTCGAGTACATCG
EW734668       --> CCACAAAGGTAAACCGATCTGTGAATCTATTATCCAGCTTGAGTACATCG

               299    -    349
UN21451        --> ATGAGGTTTGGTCCGGTACATACCCAATGCTCCCTTCTGATCCTTACCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571953       <-- ATGAGGTTTGGTCCGATACATACCCAATACTCCCCTTTGATCCTTACCAG  Raphanus raphanistrum subsp. landra
EY928295       <-- ATGAGGTTTGGTCCGGTACGTACCCAATGCTCCCTTCTGATCCTTACCAG  Raphanus sativus var. oleiformis
EY912530       <-- ATGAGGTTTGGTCCGGTACATACCCAATGCTACCTTCTGATCCTTACCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982614       <-- ATGAGGTTTGGTCCGATACATACCCAATACTCCCCTCTGATCCTTACCAG  Raphanus raphanistrum subsp. landra
FD976029       <-- ATGAGGTTTGGTCCGGTACATACC-AATGCTCCCTTCTTATCCTTACCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738964       <-- ATGAGGTTTGGTCCGGTACATACCCAATGCTACCTTCTGATCCTTACCAG  Raphanus sativus cv Rat-Tail Radish #3870
FD574977       <-- ATGAGGTTTGGTCCGGTACATACCCAATGCTCCCTTCTGATCCTTACCAG  Raphanus sativus cv Early Scarlet Globe
EY944240       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX755614       --> ATGAGGTTTGGTCCGGTACGTACCCAATGCCCCCTTCTGATCCTTACCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY948556       --> ATGAGGTTTGGTCCGGTACGTACCCAATGCTCCCTTCTGATCCTTACCAG  Raphanus sativus cv Rat-Tail Radish #3870
EY916933       --> ATGAGGTTTGGTCCGGTACATACCCAATGCTACCTTCTGATCCTTACCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565913       --> ATGAGGTTTGGTCCGATACATACCCAATACTCCCCTCTGATCCTTACCAG  Raphanus raphanistrum subsp. landra
FD550690       --> ATGAGGTTTGGTCCGGTACATACCCAATGCTCCCTTCTGATCCTTACCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW735247       --> ATGAGGTTTGGTCCGGTACATACCCAATGCTACCTTCTGATCCTTACCAG  Raphanus sativus cv Rat-Tail Radish #3870
EY905096       --> ATGAGGTTTGGTCCGGTACGTACCCATTGCTCCCTTCTGATCCTTACCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909007       --> ATGAGGTTTGGTCCGGTACGTACCCATTGCTCCCTTCTGATCCTTACCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY932605       --> ATGAGGTTTGGTCCGGTACGTACCCAATGCTCCCTTCTGATCCTTACCAG  Raphanus sativus var. oleiformis
FD548615       --> ATGAGGTTTGGTCCGGTACATACCCAATGCTCCCTTCTGATCCTTACCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD571083       --> ATGAGGTTTGGTCCGGTACATACCCAATGCTCCCTTCTGATCCTTACCAG  Raphanus sativus cv Early Scarlet Globe
EV566934       --> ATGAGGTTTGGTCCGATACATACCCAATACTCCCCTCTGATCCTTACCAG  Raphanus raphanistrum subsp. landra
FD980084       --> ATGAGGTTTGGTCCGGTACATACC-AATGCTCCCTTCTTATCCTTACCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV534861       --> ATGAGGTTTGGTCCGGTACGTACCCAATGCTCCCTTCTGATCCTTACCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW734668       --> ATGAGGTTTGGTCCGGTACATACCCAATGCTACCTTCTGATCCTTACCAG  Raphanus sativus cv Rat-Tail Radish #3870

               349    -    399
UN21451        --> AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATTGACAAAAAGCTTTACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571953       <-- AAAGCCCAAGCAAGGTTTTGGGCAGATCTCATTGACAAAAAGCTTTACGA  Raphanus raphanistrum subsp. landra
EY928295       <-- AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATTGACAAAAAGCTTTACGA  Raphanus sativus var. oleiformis
EY912530       <-- AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATCGACAAAAAGCTTTACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982614       <-- AAAGCCCAAGCAAGGTTCTGGGCAGATTTCATTGACAAAAAGCTTTACGA  Raphanus raphanistrum subsp. landra
FD976029       <-- AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATCGACAAAAAGCTTTACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738964       <-- AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATCGACAAAAAGCTTTACGA  Raphanus sativus cv Rat-Tail Radish #3870
FD574977       <-- AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATCGACAAAAAGCTTTACGA  Raphanus sativus cv Early Scarlet Globe
EY944240       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX755614       --> AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATTGACAAAAAGCTTTACGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY948556       --> AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATTGACAAAAAGCTTTACGA  Raphanus sativus cv Rat-Tail Radish #3870
EY916933       --> AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATCGACAAAAAGCTTTACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565913       --> AAAGCCCAAGCAAGGTTCTGGGCAGATTTCATTGACAAAAAGCTTTACGA  Raphanus raphanistrum subsp. landra
FD550690       --> AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATCAACAAAAAGCTTTACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW735247       --> AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATCGACAAAAAGCTTTACGA  Raphanus sativus cv Rat-Tail Radish #3870
EY905096       --> AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATTGACAAAAAGCTTTACGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909007       --> AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATTGACAAAAAGCTTTACGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY932605       --> AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATTGACAAAAAGCTTTACGA  Raphanus sativus var. oleiformis
FD548615       --> AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATCGACAAAAAGCTTTACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD571083       --> AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATCGACAAAAAGCTTTACGA  Raphanus sativus cv Early Scarlet Globe
EV566934       --> AAAGCCCAAGCAAGGTTCTGGGCAGATCTCATTGACAAAAAGCTTTACGA  Raphanus raphanistrum subsp. landra
FD980084       --> AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATCGACAAAAAGCTTTACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV534861       --> AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATTGACAAAAAGCTTTACGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW734668       --> AAAGCTCAAGCAAGGTTCTGGGCAGATTTCATCGACAAAAAGCTTTACGA  Raphanus sativus cv Rat-Tail Radish #3870

               399    -    449
UN21451        --> CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571953       <-- CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
EY928295       <-- CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
EY912530       <-- CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
FD982614       <-- CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
FD976029       <-- CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
EW738964       <-- CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
FD574977       <-- CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTT-CAGCCA
EY944240       <-- ..................................................
EX755614       --> CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
EY948556       --> CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
EY916933       --> CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
EV565913       --> CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
FD550690       --> CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
EW735247       --> CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
EY905096       --> CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
EY909007       --> CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
EY932605       --> CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
FD548615       --> CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
FD571083       --> CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTT-CAGCCA
EV566934       --> CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
FD980084       --> CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
EV534861       --> CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA
EW734668       --> CCCAGCATGGAAAATATGGGGAACAAAGGGAGAAGATCAAGTTGCAGCCA

               449    -    499
UN21451        --> AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571953       <-- AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
EY928295       <-- AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
EY912530       <-- AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
FD982614       <-- AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
FD976029       <-- AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
EW738964       <-- AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
FD574977       <-- AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
EY944240       <-- ..................................................
EX755614       --> AGAAAGAACTGCTTGAACATTTCAAGATACTTGAAACAGAGCTTGGAGAC
EY948556       --> AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
EY916933       --> AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
EV565913       --> AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
FD550690       --> AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
EW735247       --> AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
EY905096       --> AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
EY909007       --> AGAAAGAACTGCTTTAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
EY932605       --> AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
FD548615       --> AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
FD571083       --> AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
EV566934       --> AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
FD980084       --> AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
EV534861       --> AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC
EW734668       --> AGAAAGAACTGCTTGAACATTTCAAGACACTTGAAACAGAGCTTGGAGAC

               499    -    549
UN21451        --> AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571953       <-- AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTTGTAGACATCGCGTTGAT  Raphanus raphanistrum subsp. landra
EY928295       <-- AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTGAT  Raphanus sativus var. oleiformis
EY912530       <-- AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGTGTTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982614       <-- AAAGCTTACTA-TGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTGAT  Raphanus raphanistrum subsp. landra
FD976029       <-- AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738964       <-- AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTGAT  Raphanus sativus cv Rat-Tail Radish #3870
FD574977       <-- AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTAAT  Raphanus sativus cv Early Scarlet Globe
EY944240       <-- ...........................GGGTTCGTAGACATCGCGTTGAT  Raphanus sativus cv Rat-Tail Radish #3870
EX755614       --> AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY948556       --> AAAGCTTACTACGGTGGGGAAGTGTCTGGGTTCGTAGACATCGCGTTGAT  Raphanus sativus cv Rat-Tail Radish #3870
EY916933       --> AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGTGTTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565913       --> AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTGCT  Raphanus raphanistrum subsp. landra
FD550690       --> AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW735247       --> AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTGAT  Raphanus sativus cv Rat-Tail Radish #3870
EY905096       --> AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909007       --> AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY932605       --> AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTGAT  Raphanus sativus var. oleiformis
FD548615       --> AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD571083       --> AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTAAT  Raphanus sativus cv Early Scarlet Globe
EV566934       --> AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTGAT  Raphanus raphanistrum subsp. landra
FD980084       --> AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV534861       --> AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW734668       --> AAAGCTTACTACGGTGGGGAAGTGTTTGGGTTCGTAGACATCGCGTTGAT  Raphanus sativus cv Rat-Tail Radish #3870

               549    -    599
UN21451        --> GGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571953       <-- GGGTTATTGCAGCTGGTTTGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT
EY928295       <-- GGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT
EY912530       <-- GGGTTATTACAGCTGGTTCGTAGTTGTGGAGAAGTTTGGTGAGTTTAGTT
FD982614       <-- GGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT
FD976029       <-- GGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTTAGTTTAGTT
EW738964       <-- GGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT
FD574977       <-- GGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT
EY944240       <-- GGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT
EX755614       --> GGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT
EY948556       --> GGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT
EY916933       --> GGGTTATTACAGCTGGTTCGTAGTTGTGGAGAAGTTTGGTGAGTTTAGTT
EV565913       --> GGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT
FD550690       --> GGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT
EW735247       --> AGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT
EY905096       --> GGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT
EY909007       --> GGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT
EY932605       --> GGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT
FD548615       --> GGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT
FD571083       --> GGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT
EV566934       --> GGGTTATTGCAGCTGGTTCGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT
FD980084       --> GGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTTAGTTTAGTT
EV534861       --> GGGTTATTACAGCTGGTTCGTAGCTATGGAGAAGTTTGGTGAGTTTAGTT
EW734668       --> GGGTTATTACAGCTGGTTCGTAGTTATGGAGAAGTTTGGTGAGTTTAGTT

               599    -    649
UN21451        --> TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571953       <-- TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTAGAG
EY928295       <-- TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTAGAG
EY912530       <-- TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTGGAG
FD982614       <-- TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTAGAG
FD976029       <-- TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTAGAG
EW738964       <-- TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTAGAG
FD574977       <-- TTGAAACAGAGTTCCCAAAGCTGGCTGAGTGGACCAAGAGGTGTTTAGAG
EY944240       <-- TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTAGAG
EX755614       --> TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTAGAG
EY948556       --> TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAG-TGTTTAGAG
EY916933       --> TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAG-TGTTTGGAG
EV565913       --> TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTAGAG
FD550690       --> TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTAGAG
EW735247       --> TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTAGAG
EY905096       --> TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTAGAG
EY909007       --> TTGAA.............................................
EY932605       --> TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTAGAG
FD548615       --> TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTAGAG
FD571083       --> TTGAAACAGAGTTCCCAAAGCTGGCTGAGTGGACCAAGAGGTGTTTAGAG
EV566934       --> TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTAGAG
FD980084       --> TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTAGAG
EV534861       --> TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTCGAG
EW734668       --> TTGAAACAGAGTTCCCAAAGCTGACTGAGTGGACCAAGAGGTGTTTAGAG

               649    -    699
UN21451        --> AGAGAGAGCGTGGTTAAGGCATTGGCTGATTCTGACAAGATTATTGAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571953       <-- AGAGAGAGCATGGTTAAGGCATTGGCTGATTTTGACAAGATTATTGAGTA
EY928295       <-- AGAGAGAGCGTGGTTAAGGCATTGGCTGATTCTGACAAGATTATTGAGTA
EY912530       <-- AGAGAGAGCGTGTTTAAGGCATTGGCTGATTCTGACAAGATTATTGAGTA
FD982614       <-- AGAGAGAGCGTGGTTAAGGCATTGGCTGATTCTGACAAGATTATTGAGTA
FD976029       <-- AGAGAGAGCGTGGTTAAGGCATTGGCTGATTCTGACAAGATTATTGAGTA
EW738964       <-- AGAGA--GCGTGGTTAAGGCATTGGCTGATTCTGACAAGATTATTGAGTA
FD574977       <-- AGAGAGAGCGTGGTTAAGGCATTGGCTGATTCTGACAAGATTATTGAGTA
EY944240       <-- AGAGAGAGCGTGGTTAAGGCATTGGCTGATTCTGACAAGATTATTGAGTA
EX755614       --> AGAGAGAGCGTGG.....................................
EY948556       --> AGAGAG............................................
EY916933       --> AGAGAGAGCGTGTTTAAG-CATTGGCTGATTCTGACAAGAT-ATTGAGTA
EV565913       --> AGAGAGAGCGTGGTTAAGGCATTGGCTGATTCTGACAAGATTATTGAGTA
FD550690       --> AGAGAGcgtgg.......................................
EW735247       --> AGAGAGAGTGTGGTTAAG-CATTGGCTGATTCTGACA-GATTATTGAGTA
EY905096       --> AGAGAGAGCGTGGTTAAG-CATTAGCTGATTCTGACAAGATTATTGAGTA
EY909007       --> ..................................................
EY932605       --> AGAGAGAGCGTGGTTAAG-CATTGGCTGATTCTGACA-GATTATTGAGTA
FD548615       --> AGAGAGAGCGTG......................................
FD571083       --> AGAGAGAGCGTGGTTAAG-CATTGGCTGATTCTGACAAGATTATTGAGTA
EV566934       --> AGAGAGAGCATGGTTAAGGCATTGGCTGATTCTGACAAGATTATTGAGTA
FD980084       --> AGAGAGAGCGTGGTTAAGGCATTGGCTGATTCTGACAAGATTATTGAGTA
EV534861       --> AGAGAGAGCGTGGTTAAGGCATTGGCTGATTCTGACAAGATTATCGAGTA
EW734668       --> AGAGAG--CGTGGTTAAGGCATTGGCTGATTCTGACAAGATTATTGAGTA

               699    -    749
UN21451        --> TGCTTATGTCCTCAGGAAGAAGTTTGGAGCCGAGTAGATGTTTGCCTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571953       <-- TGCTTATGTGCTCAGGAAGAAGTTTGGAGCCGAGTAGATGTTTGCCTAAC  Raphanus raphanistrum subsp. landra
EY928295       <-- TGCTTATGTCCTCAGGAAGAAGTTTGGAGCCGAGTAGATGTTTGCCTAAC  Raphanus sativus var. oleiformis
EY912530       <-- TGCTTATGTCCTCAGGAAGAAGTTTGGAGCCGAGTAGATGTTTGCCTAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982614       <-- TGCTTATGTGCTCAGGAAGAAGTTTGGAGCCGAGTAGATGTTTGCCTAAC  Raphanus raphanistrum subsp. landra
FD976029       <-- TGCTTATGTCCTCAGGAAGAAGTTTGGAGCCGAGTAGATGTTTGCCTAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738964       <-- TGCTTATGTCCTCAGGAAGAAGTTTGGAGCCGAGTAGATGTTTGCCTAAC  Raphanus sativus cv Rat-Tail Radish #3870
FD574977       <-- TGCTTATGTCCTCAGGAAGAAGTTTGGAGCCGAGTAGATGTTTGCCTAAC  Raphanus sativus cv Early Scarlet Globe
EY944240       <-- TGCTTATGTCCTCAGGAAGAAGTTTGGAGCCGAGTAGATGTTTGCCTAAC  Raphanus sativus cv Rat-Tail Radish #3870
EX755614       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY948556       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY916933       --> TGCTTATGTCCTCAG-AAGAAGTTTGGAGCCGAGTAGA............  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565913       --> TACTTATGTGCTCAGGAAGAAGTTTGGAGCCGAGTAGATGTTTGCCTAAC  Raphanus raphanistrum subsp. landra
FD550690       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW735247       --> TGCTTATGTC-TCAG-AAGA-GTT-GGAGCCGAGTAGATGTTgcct....  Raphanus sativus cv Rat-Tail Radish #3870
EY905096       --> TGCTTATGCCCTC.....................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909007       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY932605       --> TGCTTATGTCC.......................................  Raphanus sativus var. oleiformis
FD548615       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD571083       --> TGCTTATGTCCTCAG-AAGAAGTTTGGAGCCGAGTAGATGTTTGCCTAAC  Raphanus sativus cv Early Scarlet Globe
EV566934       --> TGCTTATGTGCTCAGGAAGAAGTTTGGAGCCGAGTAGATGTTTGCCTAAC  Raphanus raphanistrum subsp. landra
FD980084       --> TGCTTATGTCC.......................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV534861       --> TGCTTATGTCC.......................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW734668       --> TGCTTATGTCCTCAGGAAGAAGTTTGGAGCCGAGTAGATGTTTGCCTAAC  Raphanus sativus cv Rat-Tail Radish #3870

               749    -    799
UN21451        --> TTGGTCTGAACACACA-GGAAAGAAAATGGTTCGGTATCA---CCGTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571953       <-- TTGGTCTGAACACACA-GGAAAGAAAATGGTTCGGTATCA---CCGTTAT
EY928295       <-- TTGGTCTGAACACACA-GGAAAGAAAATGGTTCGGTATCA---CCGTTAT
EY912530       <-- TTGGTCTGAACACACAAGGAAAGAAAATGGTTCGGTATCAAGACCGTTAT
FD982614       <-- TTGGTCTGAACACACA-GGAAAGAAAATGGTTCGGTATCA---CCGTTAT
FD976029       <-- TTGGTCTGAACACACA-GGAAAGAAAATGGTTCGGTATCA---CCGTTAT
EW738964       <-- TTGGTCTGAACACACAAGGAAAGAAAATGGTTCGTTATCAAGACCGTTAT
FD574977       <-- TTGGTCTGAACACACA-GGAAAGAAAATGGTTCGGTATCA---CCGTTAT
EY944240       <-- TTGGTCTGAACACACA-GGAAAGAAAATGGTTCGGTATCA---CCGTTAT
EX755614       --> ..................................................
EY948556       --> ..................................................
EY916933       --> ..................................................
EV565913       --> TTGGTCTGAACACA....................................
FD550690       --> ..................................................
EW735247       --> ..................................................
EY905096       --> ..................................................
EY909007       --> ..................................................
EY932605       --> ..................................................
FD548615       --> ..................................................
FD571083       --> TTGGTCTGA-CACACA-GGAAAGAAAATGGTTCGGTATCA..........
EV566934       --> TTGGTCTGAACACACA-GGAAAGAAAATGGTTCGGTATCA---CCGTTAT
FD980084       --> ..................................................
EV534861       --> ..................................................
EW734668       --> TTGGTCTGAACACACAAGGAAAGAAAATGGTTCGTTATCAAGACCGTTAT

               799    -    849
UN21451        --> GTTCTGTTCTTATGTGAAATTTGTATTTTCTCTCCTGTATTTTCTTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571953       <-- GTTCTGTTTTTATGTGAAATTTGTATTTTCTCTCCTGTATTTTCTTTGTT
EY928295       <-- GTTCTGTTCTTATGTGAAATTTGTATTTTCTCTCCTGTATTTTCTTTGTT
EY912530       <-- GTTCTGTTCTTATGTGAAATTTGTATTTTCTCTCCTGTATTTTCTTTGTT
FD982614       <-- GTTCTGTTCTTATGTGAAATTTGTATTTTCTCTCCTGTATTTTCTTTGTT
FD976029       <-- GTTCTGTTCTTATGTGAAATTTGTATTTTCTCTCCTGTATTTTCTTTGTT
EW738964       <-- GTTCTGTTCTTATGTGAAATTTGTATTTTCTCTCCTGTATTTTCTTTGTT
FD574977       <-- GTTCTGTTCTTATGTGAAATTTGTATTTTCTCTCCTGTATTTTCTTTGTT
EY944240       <-- GTTCTGTTCTTATGTGAAATTTGTATTTTCTCTCCTGTATTTTCTTTGTT
EX755614       --> ..................................................
EY948556       --> ..................................................
EY916933       --> ..................................................
EV565913       --> ..................................................
FD550690       --> ..................................................
EW735247       --> ..................................................
EY905096       --> ..................................................
EY909007       --> ..................................................
EY932605       --> ..................................................
FD548615       --> ..................................................
FD571083       --> ..................................................
EV566934       --> GTTCTGTTCTTATGTGAAATTTGTATTTTCTCTCCTGTATTTTCTTTGTT
FD980084       --> ..................................................
EV534861       --> ..................................................
EW734668       --> GTTCTGTTCTTATGTGAAATTTGTATTTTCTCTCCTGTATTTTCTTTGTT

               849    -    899
UN21451        --> TGTGTACTTTCTAGCTTCTAAAAGCATGAAAATCCATAATAAATAAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571953       <-- TGTGTACTTTCTAGCTTCTAAAAGCATGAAAATCCATAATAAATAAATGT
EY928295       <-- TGTGTATTTTCTAGCTTCTAAAAGCATGAAAATCCATAATAAATAAATGT
EY912530       <-- TGTGTACTTTCTAGCTTCCAAAAGCATGAAAATCCATAATAAATAAATGT
FD982614       <-- TGTGTACTTTCTAGCTTCTAAAAGCATGAAAATCCATAATAAATAAATGT
FD976029       <-- TGTGTACTTTCTAGCTTCTAAAAGCATGAAAATCCATAATAAATAAATGT
EW738964       <-- TGTGTACTTTCTAGCTTCCAAAAGCATGAAAATCCATAATAAATAAATGT
FD574977       <-- TGTGTACTTTCTAGCTTCTAAAAGCATGAAAATCCATAATAAATAAATGT
EY944240       <-- TGTGTATTTTCTAGCTTCTAAA-GCATGAAAATCCATAATAAATAAATGT
EX755614       --> ..................................................
EY948556       --> ..................................................
EY916933       --> ..................................................
EV565913       --> ..................................................
FD550690       --> ..................................................
EW735247       --> ..................................................
EY905096       --> ..................................................
EY909007       --> ..................................................
EY932605       --> ..................................................
FD548615       --> ..................................................
FD571083       --> ..................................................
EV566934       --> TGTGTACTTTCTAGCTTCTAAAAGCATGAAAATCCATAATAAATAAATGT
FD980084       --> ..................................................
EV534861       --> ..................................................
EW734668       --> TGTGTACTTTCTAGCTTCCAAAAGCATGAAAATCCATAATAAATAAATGT

               899    -    949
UN21451        --> TTGAATTGG
                   ~~~~~~~~~
EV571953       <-- TTG......
EY928295       <-- TTG......
EY912530       <-- TTGAATTGG
FD982614       <-- TTG......
FD976029       <-- TTG......
EW738964       <-- TTGAATTG.
FD574977       <-- TTG......
EY944240       <-- TTG......
EX755614       --> .........
EY948556       --> .........
EY916933       --> .........
EV565913       --> .........
FD550690       --> .........
EW735247       --> .........
EY905096       --> .........
EY909007       --> .........
EY932605       --> .........
FD548615       --> .........
FD571083       --> .........
EV566934       --> TTG......
FD980084       --> .........
EV534861       --> .........
EW734668       --> TTGAATTG.