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Alignment for radish unigene UN21457

               1      -     51
UN21457        --> GGTCGAATCAAACTACTCAAATTCCGAACCCGCAATCAAATTGCGAGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- GGTCGAATCAAACTACTCAAATTCCGAACCCGCAATCAAATTGCGAGATA
EW716425       <-- ..................................................
EV551338       <-- ..................................................
EV567372       <-- ..................................................
EX762514       <-- ..................................................
EV568165       <-- ..................................................
EY910869       --> GGTCGAATCAAACTACTCAAATTCCGAACCCGCAATCAAATTGCGAGATA
EW721334       --> ..................................................
EV572329       --> ..................................................
EV546450       --> ..................................................
EX766748       --> ..................................................
FD960969       --> ..................................................
EV572956       --> ..................................................

               51     -    101
UN21457        --> TTCAACAAAAGATTCCATCATTTAACTTTTCTTCTGTTAAGACAGAAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- TTCAACAAAAGATTCCATCATTTAACTTTTCTTCTGTTAAGACAGAATAC
EW716425       <-- ..CAACAAAAGATTCCATCATTTAACTTTTCTTCTGTTAAGACAGAAAAC
EV551338       <-- ..................................................
EV567372       <-- ..................................................
EX762514       <-- ..................................................
EV568165       <-- ..................................................
EY910869       --> TTCAACAAAAGATTCCATCATTTAACTTTTCTTCTGTTAAGACAGAATAC
EW721334       --> ..............CCATCATTTAACTTTTCTTCTGTTAAGACAGAAAAC
EV572329       --> ..............................CTTCTGTTAAAACAGAAAAC
EV546450       --> ..................................................
EX766748       --> ..................................................
FD960969       --> ..................................................
EV572956       --> ..................................................

               101    -    151
UN21457        --> TAGTCTAAAAACATCTGATAATGGCTGCTAGGAGTTTTAAGTTGTTCATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- TAGTCTAAAAACATCTGATAATGGCTGCTAAGAGTTTTAAGTTGCAAATA
EW716425       <-- TAGTCTAAAAACATCTGATAATGGCTGCTAGGAGTTTTAAGTTGTTCATA
EV551338       <-- .AGTCTAAAAACATCTGATAATG-CTGCCAGGAGTTTTAAGTTGTTCATA
EV567372       <-- ..................................................
EX762514       <-- ..................................................
EV568165       <-- ..................................................
EY910869       --> TAGTCTAAAAACATCTGATAATGGCTGCTAAGAGTTTTAAGTTGCAAATA
EW721334       --> TAGTCTAAAAACATCTGATAATGGCTGCTAGGAGTTTTAAGTTGTTCATA
EV572329       --> TAGTCTAAAAACATCTGATAATGGCTGCTAGGAGTTTTAAGTTGTTCATA
EV546450       --> .AGTCTAAAAACATCTGATAATG-CTGCCAGGAGTTTTAAGTTGTTCATA
EX766748       --> .......................GCTGCTAGGAGTTTTAAGTTGTTCATA
FD960969       --> ..................................................
EV572956       --> ..................................................

               151    -    201
UN21457        --> AAGTAAAAAAAAAAAA-CAGATAAAGAAAAAATGCAACACTACAAAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- AAGTCAAGAAAAAAAA-CAGATAAA-AAAACTTGCAACACTACAAAAAGA
EW716425       <-- AAGTAAAAAAAAAAAA-CAGATAAAGAAAAAATGCAACACTACAAAAAGA
EV551338       <-- AAGTAAAAAAAAAAAA-CAGATAAAGAAAAAATGCAACACTACAAAAAGA
EV567372       <-- .......AAAAAAAAA-CAGATAAAGAAAAA-TGCAACACTACAAAAAGA
EX762514       <-- ..................................................
EV568165       <-- ..................................................
EY910869       --> AAGTCAAGAAAAAAAA-CAGATAAA-AAAACTTGCAACACTACAAAAAGA
EW721334       --> AAGTAAAAAAAAAAA--CAGATAAAGAAAAAATGCAACACTACAAAAAGA
EV572329       --> AAGTAAAAAAAAAAAAACAAATAAAGAAAAAATGCAACACTACAAAAAAA
EV546450       --> AAGTAAAAAAAAAAAA-CAGATAAAGAAAAAATGCAACACTACAAAAAGA
EX766748       --> AAGTAAAAAAAAAAAAACAGATAAAGAAAAAATGCAACACTACAAAAAGA
FD960969       --> ..................................................
EV572956       --> ..................................................

               201    -    251
UN21457        --> AAAAAA-CTTGTCATGGTCTATTCATCATCTTGTGACTTAGTTTTCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- AAAAAA-CT-GTCATGGTCTATTCATCATCTTGTGACTTAGTTTTCTTCT
EW716425       <-- AAAAAA-CTTGTCATGGTCTATTCATCATCTTGTGACTTAGTTTTCTTCT
EV551338       <-- AAAAAA-CTTGTCATGGTCTATTCATCATCTTGTGACTTAGTTTTCTTCT
EV567372       <-- AAAAA--CTTGTCATGGTCTATTCATCATCTTGTGACTTAGTTTTCTTCT
EX762514       <-- ..............TGGTCTAT-CATCATCT-GTGACTTAGTTT-CT-CT
EV568165       <-- ..................................................
EY910869       --> AAAAAA-CT-GTCATGGTCTATTCATCATCTTGTGACTTAGTTTTCTTCT
EW721334       --> AAAAAAACTTGTCATGGTCTATTCATCATCTTGTGACTTAGTTTTCTTCT
EV572329       --> AAAAAA-CTTGTCAGGGTCTATTCATCATCTTGGGACTTATTTTTCTTCT
EV546450       --> AAAAAA-CTTGTCATGGTCTATTCATCATCTTGTGACTTAGTTTTCTTCT
EX766748       --> AAAAAA-CTTGTCATGGTCTATTCATCATCTTGTGACTTAGTTTTCTTCT
FD960969       --> ........................................tTTTTCTTCT
EV572956       --> ..................................................

               251    -    301
UN21457        --> TCTTTTTCTTCTTGCTGTGACCATTATCTGTTGTCGTTTCCTCTTCAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- TCTTTTTCTTCTTGCTGTGACCATTATCTGTTGTCGTTTCCTCTTCAACT
EW716425       <-- TCTTTTTCTTCTTGCTGTGACCATTATCTGTTGTCGTTTCCTCTTCAACT
EV551338       <-- TCTTTTTCTTCTTGCTGTGACCATTATCTGTTGTCGTTTCCTCTTCAACT
EV567372       <-- TCTTTTTCTTCTTGCTGTGACCATTATCTGTTGTCGTTTCCTCTTCAACT
EX762514       <-- -CTTTT-CTTCTTGCTGTGACCATTATCTGTTGTCGTTTCCTCTTCAACT
EV568165       <-- ..................................................
EY910869       --> TCTTTTTCTTCTTGCTGTGACCATTATCTGTTGTCGTTTCCTCTTCAACT
EW721334       --> TCTTTTTCTTCTTGCTGTGACCATTATCTGTTGTCGTTTCCTCTTCAACT
EV572329       --> TCTTTTTCTTCTTGCTGTGACCATTATCTGTTGTCGTTTCCTCTTCAACT
EV546450       --> TCTTTTTCTTCTTGCTGTGACCATTATCTGTTGTCGTTTCCTCTTCAACT
EX766748       --> TCTTTTTCTTCTTGCTGTGACCATTATCTGTTGTCGTTTCCTCTTCAACT
FD960969       --> TCTTTTTCTTCTTGCTGTGACCATTATCTGTTGTCGTTTCCTCTTCAACT
EV572956       --> ..................................................

               301    -    351
UN21457        --> ACTTTGCTTTTCTTCTTTTTCTTTGATTTCACCTCTTCTTCTACTTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ACTTTGCTTTTCTTCTTTTTCTTTGATTTCACCTCTTCTTCTACTTCCTC
EW716425       <-- ACTTTGCTTTTCTTCTTTTTCTTTGATTTCACCTCTTCTTCTACTTCCTC
EV551338       <-- ACTTTGCTTTTCTTCTTTTTCTTTGATTTCACCTCTTCTTCTACTTCCTC
EV567372       <-- ACTTTGCTTTTCTTCTTTTTCTTTGATTTCAC-TCTTCTTCTACTTCCTC
EX762514       <-- ACTTTGCTTT-CTTCTTTT-CTTTGATTTCACCTCTTCGTCTACTTCCTC
EV568165       <-- ..................................................
EY910869       --> ACTTTGCTTTTCTTCTTTTTCTTTGATTTCACCTCTTCTTCTACTTCCTC
EW721334       --> ACTTTGCTTTTCTTCTTTTTCTTTGATTTCACCTCTTCTTCTACTTCCTC
EV572329       --> ACTTTGCTTTTCTTCTTTTTCTTTGATTTCACCTCTTCTTCTACTTCCTC
EV546450       --> ACTTTGCTTTTCTTCTTTTTCTTTGATTTCACCTCTTCTTCTACTTCCTC
EX766748       --> ACTTTGCTTTTCTTCTTTTTCTTTGATTTCACCTCTTCGTCTACTTCCTC
FD960969       --> ACTTTGCTTTTCTTCTTTTTTTTTGATTTCACCTCTTCTTCTACTTCCTC
EV572956       --> ..................................................

               351    -    401
UN21457        --> CTCATCCTTCTCCTCTGCCTTTCTCTTCTCTTTCTTCTTTTTCTTCTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- CTCATCCTTCTCCTCTGCCTTTCTCTTCTCTTTCTTCTTTTTCTTCTCAG
EW716425       <-- CTCATCCTTCTCCTCTGCCTTTCTCTTCTCTTTCTTCTTTTTCTTCTCAG
EV551338       <-- CTCATCCTTCTCCTCTGCCTTTCTCTTCTCTTTCTTCTTTc.........
EV567372       <-- CTCATCCTTCTCCTCTGCCTTTCTCTTCTCTTTCTTCTTTTTCTTCTCAG
EX762514       <-- CTCATC-TTCTCCTCTGCCTTTCTCTTCTCTTTCTTCTTTTTCTTCTCAG
EV568165       <-- ..................................................
EY910869       --> CTCATCCTTCTCCTCTGCCTTTCTCTTCTCTTTCTTCTTTTTCTTCTCAG
EW721334       --> CTCATCCTTCTCCTCTGCCTTTCTCTTCTCTTTCTTCTTTTTCTTCTCAA
EV572329       --> CTCATCCTTCTCCTCTGCCTTTCTCTTCTCTTTCTTCTTTTTCTTCTCAA
EV546450       --> CTCATCCTTCTCCTCTGCCTTTCTCTTCTCTTTCTTCTTTc.........
EX766748       --> CTCATCCTTCTCCTCTGCCTTTCTCTTCTCTTTCTTCTTTTTCTTCTCAA
FD960969       --> CTCATCCTTCTCCTCTGCCTTTCTCTTCTCTTTCTTCTTTTTCTTCTCAA
EV572956       --> ..........................................CTTCTCAG

               401    -    451
UN21457        --> AGGCCTCCACCACTTTCTCTTCTCCCTCATCTTTCTTGTCAAGATTCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- AGGCCTCCACCACTTT-TCTTCTCCCTCATCTTTCTTGTCAAGATTCTCC
EW716425       <-- AGGCCTCCACCACTTTCTCTTCTCCCTCATCTTTCT-GTCAAGATTCTCC
EV551338       <-- ..................................................
EV567372       <-- AGGCCTCCACCACTTTCTCTTCTCCCTCATCTTTCTTGTCAAGATTCTCC
EX762514       <-- AGGCCTCCACCACTTTCTCTTCTCCCTCATCTTTCTTGTCAAGATTCTCC
EV568165       <-- ..................................................
EY910869       --> AGGCCTCCACCACTTT-TCTTCTCCCTCATCTTTCTTGTCAAGATTCTCC
EW721334       --> AGGCCTCCACCACTTTCTCTTCTCCCTCATCTTTCTTGTCAAGATTCTCC
EV572329       --> AGGCCTCCACCACTTTCTCTTCTCCCTCATCTTTCTTGTCAAGATTCTCC
EV546450       --> ..................................................
EX766748       --> AGGCCTCCACCACTTTCTCTTCTCCCTCATCTTTCTTGTCAAGATTCTCC
FD960969       --> AGGCCTCCACCATTTTCTCTTCTCCCTCATCTTTCTTGTCAAGATTCTCC
EV572956       --> AGGCCTCCACCACTTTCTCTTCTCCCTCATCTTTCTTGTCAAGATTCTCC

               451    -    501
UN21457        --> ATCACTTCTTTCATTACATCCACATTCTTACGTGGGGCAACACCTTTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ATCACTTCTTTCATTACATCCACAc.........................
EW716425       <-- ATCACTTCTTTCATTACATCCACATTCc......................
EV551338       <-- ..................................................
EV567372       <-- ATCACTTCTTTCATTACATCCACATTCTTACGTGGGGCAACACCTTTGTC
EX762514       <-- ATCACTTCTTTCATTACATCCACATTCTTACGTGGGGCAACACCTTTGTC
EV568165       <-- ..................................................
EY910869       --> ATCACTTCTTTCATTACATCCACAc.........................
EW721334       --> ATCACTTCTTTCATTACATCCACATTCTTACGTGGGGCAACACCTTTGTC
EV572329       --> ATCACTTCTTTCATTACATCCACATTCTTACGTGGGGCAACACCTTTGTC
EV546450       --> ..................................................
EX766748       --> ATCACTTCTTTCATTACATCCACATTCTTACGTGGGGCAACACCTTTGTC
FD960969       --> ATCACTTCTTTCATTACATCCACATTCTTACGTGGGGCAACACCTTTGTC
EV572956       --> ATCACTTCTTTCATTACATCCACATTCTTACGTGGGGCAACACCTTTGTC

               501    -    551
UN21457        --> ATAAAATTCTAGTCGTTCCTCTACTTGTTCCCTAAGTTTCTCACCAAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................
EW716425       <-- ..................................................
EV551338       <-- ..................................................
EV567372       <-- ATAAAATTCTAGTCGTTCCTCTACTTGTTCCCTAAGTTTCTCACCAAAAG
EX762514       <-- ATAAAATTCTAGTCGTTCCTCTACTTGTTCCCTAAGTTTCTCACCAAAAG
EV568165       <-- ..................................................
EY910869       --> ..................................................
EW721334       --> ATAAAATTCTAGTCGTTCCTCTACTTGTTCCCTAAGTTTCTCACCAAAAG
EV572329       --> ATAAAATTCTAGTCGTTCCTCTACTTGTTCCCTAAGTTTCTCACCAAAAG
EV546450       --> ..................................................
EX766748       --> ATAAAATTCTAGTCGTTCCTCTACTTGTTCCCTAAGTTTCTCACCAAAAG
FD960969       --> ATAAAATTCTAGTCGTTCCTCCACTTGTTCCTTAAGTTTCTCACCAAATG
EV572956       --> ATAAAATTCTAGTCGTTCCTCTACTTGTTCCCTAAGTTTCTCACCAAAAG

               551    -    601
UN21457        --> CCGTAGTGCTGCTATCAGCGAAACAATCAATCCGGGAAGCAATGGAACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW716425       <-- ..................................................  Raphanus sativus var. oleiformis
EV551338       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567372       <-- CCGTAGTGCTGCTATCAGCGAAACAATCAATTCGGGAAGCAATGGAACAC  Raphanus raphanistrum subsp. landra
EX762514       <-- CCGTAGTGCTGCTATCAGCGAAACAAA-AATCCGGGAAGCAATGGAACAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV568165       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY910869       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721334       --> CCGTAGTGCTGCTATCAGCGAAACAATCAATCCGGGAAGCAATGGAACAC  Raphanus sativus var. oleiformis
EV572329       --> CCGTAGTGCTGCTATCAGCGAAACAATCAATTCGGGAAGCAATGGAACAC  Raphanus raphanistrum subsp. landra
EV546450       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766748       --> CCGTAGTGCTGCTATCAGCGAAACAA-AAATCCGGGAAGCAATGGAACAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD960969       --> CTGTAGTGCTGCTATCAGCGAAACAATCAATCCGGGAAGCAATGGAACAC  Raphanus raphanistrum subsp. maritimus
EV572956       --> CCGTAGTGCTGCTATCAGCGAAACAATCAATTCGGGAAGCAATGGAACAC  Raphanus raphanistrum subsp. landra

               601    -    651
UN21457        --> TTGTTTGCCAGGTAACGAGCAATACGTCCCTTGTTTTTAGCAGCCGCGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW716425       <-- ..................................................  Raphanus sativus var. oleiformis
EV551338       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567372       <-- TTGTTTGCGAGGTAACGAGCAATACGTCCCTTGTTTTTAGCAGCCGCACG  Raphanus raphanistrum subsp. landra
EX762514       <-- TTGTTTGCCAGGTAACGAGCAATACGTCCCTTGTTTTTAGCAGCCGCGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV568165       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY910869       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721334       --> TTGTTTGCCAGGTAACGAGCAATACGTCCCTTGTTTTTAGCAGCCGCGCG  Raphanus sativus var. oleiformis
EV572329       --> TTGTTTGCGAGGTAACGAGCAATACGTCC.....................  Raphanus raphanistrum subsp. landra
EV546450       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766748       --> TTGTTTGCCAGGTAACGAGCAATACGTCCCTTGTTTTTAGCAGCCGCGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD960969       --> TTGTTTGCCAGGTAACGAGCAATACGTCCCTTGTTTTTA...........  Raphanus raphanistrum subsp. maritimus
EV572956       --> TTGTTTGCGAGGTAACGAGCAATACGTCCCTTGTTTTTAGCAGCCGCACG  Raphanus raphanistrum subsp. landra

               651    -    701
UN21457        --> TCCAATGAACGAAGAATGGAATATAAGACCGTACTTGGGCGTGTTCCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................
EW716425       <-- ..................................................
EV551338       <-- ..................................................
EV567372       <-- TCCAATGAACGAGGAATGGAATATCAGACCGTACTTGGGCGTGTTCCCAC
EX762514       <-- TCCAATGAACGAAGAATGGAATATAAGACCGTACTTGGGCGTGTTCCCAC
EV568165       <-- ..................................................
EY910869       --> ..................................................
EW721334       --> TCCAATGAACGAAGAATGGAATATAAGACCGTACTTGGGCGTGTTCCCAC
EV572329       --> ..................................................
EV546450       --> ..................................................
EX766748       --> TCCAATGAACGAAGAATGGAATATAAGACCGTACTTGGGCGTGTTCCCAC
FD960969       --> ..................................................
EV572956       --> TCCAATGAACGAGGAATGGAATATCAGACCGTACTTGGGCGTGTTCCCAT

               701    -    751
UN21457        --> GCGTTTTAAGCGCCCTGAAAAGTGCCTTCTCAGCACCAAGAATCTGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................
EW716425       <-- ..................................................
EV551338       <-- ..................................................
EV567372       <-- GTGTTTTAAGCGCCCTGAAGAGTGCCTTCTCAGCGCCAAGAATCTGGAGA
EX762514       <-- GCGTTTTAAGCGCCCTGAAAAGTGCCTTCTCAGCACCAAGAATCTGGAGA
EV568165       <-- .........................CTTCTCAGCACCAAGAATCTGGAGA
EY910869       --> ..................................................
EW721334       --> GCGTTTTAAGCGCCCTGAAAAGTGCCTTCTCAGCACCAAGAATCTGGAGA
EV572329       --> ..................................................
EV546450       --> ..................................................
EX766748       --> GCGTTTTAAGCGCCCTGAAAAGTGCCTTCTCAGCACCAAGAATCTGGAGA
FD960969       --> ..................................................
EV572956       --> GTGTTTTAAGCGCCCTGAAGAGTGCCTTCTCAGCACCAAGAATCTGGAGA

               751    -    801
UN21457        --> GTTGAAGAGGGGCACTTGGCGAGATTCGTCAGGCTCCCAGCATGTGAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW716425       <-- ..................................................  Raphanus sativus var. oleiformis
EV551338       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567372       <-- GTTGAAGAGGGGCACTTGGCGAGATTCGTCAGACTCCCAGCATGTGAGAT  Raphanus raphanistrum subsp. landra
EX762514       <-- GTTGAAGAGGGGCACTTGGCGAGATTCGTCAGGCTCCCAGCATGTGAGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV568165       <-- GT-GAAGAGGGGCACTTGGCGAGAT-CGTCAGACTCCCAGCATGCGAGAT  Raphanus raphanistrum subsp. landra
EY910869       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721334       --> GTTGAAGAGGGGCACTTGGCGAGATTCGTCAGGCTCCCAGCATGTGAGAT  Raphanus sativus var. oleiformis
EV572329       --> ..................................................  Raphanus raphanistrum subsp. landra
EV546450       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766748       --> GTTGAAGAGGGGCACTTGGCGAGATTCGTCAGGCTCCCAGCATGTGAGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD960969       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV572956       --> GTTGAAGAGGGGCACTTGGCGAGATTCGTCAGACTCCCAGCATGCGAGAT  Raphanus raphanistrum subsp. landra

               801    -    851
UN21457        --> CAGCCTTGCACCAACCATATCTCCGATCAATGCCGCCAAGTTTGGAGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................
EW716425       <-- ..................................................
EV551338       <-- ..................................................
EV567372       <-- CAGCCTTGCACCAACCATATCTCCGATCAACGCCGCCAAGTTTGGAGCAA
EX762514       <-- CAGCCTTGCACCAACCATATCTCCGATCAATGCCGCCAAGTTTGGAGCAA
EV568165       <-- CA-CCTCGCACCAACCATATCTCCGATCAATGCCGCCAAGTTTGGAGCAA
EY910869       --> ..................................................
EW721334       --> CAGCCTTGCACCAACCATATCTCCGATC......................
EV572329       --> ..................................................
EV546450       --> ..................................................
EX766748       --> CAGCCTTGCACCAACCATATCTCCGATCAATGCCGCCAAGTTTG......
FD960969       --> ..................................................
EV572956       --> CAGCCTCGCACCAACCATATCTCCGATCAATGCCGCCAAGTTTGGAGCAA

               851    -    901
UN21457        --> TGTCGCTCATTTTAGCAACAAGGTAATCGTGGAGCTTCTTTCTGTAATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................
EW716425       <-- ..................................................
EV551338       <-- ..................................................
EV567372       <-- TGTCGCTCATTTTAGCAACAAGGTAATCGTGGAGCTTCTTTCTGTAATCA
EX762514       <-- TGTCGCTCATTTTAGCAACAAGGTAATCGTGGAGCTTCTTTCTGTAATCA
EV568165       <-- TGTCGCTCATTTTAGCAACAAGGTAATCGTGGAGCTTCTTTCTGTAATCA
EY910869       --> ..................................................
EW721334       --> ..................................................
EV572329       --> ..................................................
EV546450       --> ..................................................
EX766748       --> ..................................................
FD960969       --> ..................................................
EV572956       --> TGTCGCTCATTTTAGCAACAAGGTAATCGTGGAGCTTCTTTCTGTAATCA

               901    -    951
UN21457        --> GCTAGCTCTATGACTTTCTGAGCAAAGGTCTGGACGTTCATCAGATCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................
EW716425       <-- ..................................................
EV551338       <-- ..................................................
EV567372       <-- GCTAGCTCTATGACTTTCTGAGCAAAGGTCTGGACGTTCATCAGATCAAG
EX762514       <-- GCTAGCTCTATAACTTTCTGAGCAAAGGTCTGGACGTTC...........
EV568165       <-- GCTAGCTCTATGACTTTCTGAGCAAAGGTCTGGACGTTCATCAGATCAAG
EY910869       --> ..................................................
EW721334       --> ..................................................
EV572329       --> ..................................................
EV546450       --> ..................................................
EX766748       --> ..................................................
FD960969       --> ..................................................
EV572956       --> GCTAGCTCTATGACTTTCTGAGCAAAGGTCTGGACGTTCATCAGATCAAG

               951    -   1001
UN21457        --> TGGAGATAAATCCTGGCCCATAGATGCTTTTCCAGCTTCAACGACTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................
EW716425       <-- ..................................................
EV551338       <-- ..................................................
EV567372       <-- TGGAGATAAATCCTGGCCCATAGATGCTTTTCCAGCTTCAACGACTTCc.
EX762514       <-- ..................................................
EV568165       <-- TGGAGATAAATCCTGGCCCATAGATGCTTTTCCAGCTTCAACGACTTCTT
EY910869       --> ..................................................
EW721334       --> ..................................................
EV572329       --> ..................................................
EV546450       --> ..................................................
EX766748       --> ..................................................
FD960969       --> ..................................................
EV572956       --> TGGAGATAAATCCTGGCCCATAGATGCTTTTCCAGCTTCAACGACTTCTT

               1001   -   1051
UN21457        --> TTGCCTTATCTTCATCCCCGAGGACTTCAGTAAGCATAGGGATGTGCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................
EW716425       <-- ..................................................
EV551338       <-- ..................................................
EV567372       <-- ..................................................
EX762514       <-- ..................................................
EV568165       <-- TTGCCTTATCTTCATCCCCGAGGACTTCAGTAAGCATAGGGATGTGCTCT
EY910869       --> ..................................................
EW721334       --> ..................................................
EV572329       --> ..................................................
EV546450       --> ..................................................
EX766748       --> ..................................................
FD960969       --> ..................................................
EV572956       --> TTGCCTTATCTTCATCCCCGAGGACTTCAGTAAGCATAGGGATGTGCTCT

               1051   -   1101
UN21457        --> TCAGAGAGCTTTGACTTGTCTTCAATCATCTTTGAGACTCGGGCGTAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................
EW716425       <-- ..................................................
EV551338       <-- ..................................................
EV567372       <-- ..................................................
EX762514       <-- ..................................................
EV568165       <-- TCAGAGAGCTTTGACTTGTCTTCAATCATCTTTGAGACTCGGGCGTAAAG
EY910869       --> ..................................................
EW721334       --> ..................................................
EV572329       --> ..................................................
EV546450       --> ..................................................
EX766748       --> ..................................................
FD960969       --> ..................................................
EV572956       --> TCAGAGAGCTTTGACTTGTCTTCAATCATCTTTGAGACTCGGGCGTAAAG

               1101   -   1151
UN21457        --> GTAGTTGTCATTTACTATCTTCACTAGCTCGGGGAAGTGCCACGAGTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................
EW716425       <-- ..................................................
EV551338       <-- ..................................................
EV567372       <-- ..................................................
EX762514       <-- ..................................................
EV568165       <-- GTAGTTGTCATTTACTATCTTCACTAGCTCGGGGAAGTGCCACGAGTACC
EY910869       --> ..................................................
EW721334       --> ..................................................
EV572329       --> ..................................................
EV546450       --> ..................................................
EX766748       --> ..................................................
FD960969       --> ..................................................
EV572956       --> GTAGTTGTCATTTACTATCTTCACTAGCTCGGGGAAGTGCCACGAGTACC

               1151   -   1201
UN21457        --> ATTCTCTGACTCTCATGGCAAAGGAGTTGATATCCTTATCAAGAGTATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................
EW716425       <-- ..................................................
EV551338       <-- ..................................................
EV567372       <-- ..................................................
EX762514       <-- ..................................................
EV568165       <-- ATTCTCTGACTCTCATGGCAAAGGAGTTGATATCCTTATCAAGAGTATCA
EY910869       --> ..................................................
EW721334       --> ..................................................
EV572329       --> ..................................................
EV546450       --> ..................................................
EX766748       --> ..................................................
FD960969       --> ..................................................
EV572956       --> ATTCTCTGACTCTCATGGCAAAGGAGTTGATATCCTTATCAAGAGTATCA

               1201   -   1251
UN21457        --> AGCATGAAGATGGCTTGAATAACCATGTTGTCCACACGGTTAACATTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................
EW716425       <-- ..................................................
EV551338       <-- ..................................................
EV567372       <-- ..................................................
EX762514       <-- ..................................................
EV568165       <-- AGCATGAAGATGGCTTGAATAACCATGTTGTCCACACGGTTAACATTGAA
EY910869       --> ..................................................
EW721334       --> ..................................................
EV572329       --> ..................................................
EV546450       --> ..................................................
EX766748       --> ..................................................
FD960969       --> ..................................................
EV572956       --> AGCATGAAGATGGCTTGAATAACCATGTTGTCCACACGGTTAACATTGAA

               1251   -   1301
UN21457        --> CTTCACCTTTGCTCTGCTGTAGCTGTGAGCTAGTCCAAGTTGTGCTTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................
EW716425       <-- ..................................................
EV551338       <-- ..................................................
EV567372       <-- ..................................................
EX762514       <-- ..................................................
EV568165       <-- CTTCACCTTTGCTCTGCTGTAGCTGTGAGCTAGTCCAAGTTGTGCTTTCT
EY910869       --> ..................................................
EW721334       --> ..................................................
EV572329       --> ..................................................
EV546450       --> ..................................................
EX766748       --> ..................................................
FD960969       --> ..................................................
EV572956       --> CTTCACC...........................................

               1301   -   1351
UN21457        --> CCAAATCACCAGGCTTTAGGTCCTTGATGAACCTATCAAAATGCTGACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................
EW716425       <-- ..................................................
EV551338       <-- ..................................................
EV567372       <-- ..................................................
EX762514       <-- ..................................................
EV568165       <-- CCAAATCACCAGGCTTTAGGTCCTTGATGAACCTATCAAAATGCTGACGA
EY910869       --> ..................................................
EW721334       --> ..................................................
EV572329       --> ..................................................
EV546450       --> ..................................................
EX766748       --> ..................................................
FD960969       --> ..................................................
EV572956       --> ..................................................

               1351   -   1401
UN21457        --> ACACCTCTAAGAAGCTCGTGAACGAACTCGTTACTCTGGCATGGGATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................
EW716425       <-- ..................................................
EV551338       <-- ..................................................
EV567372       <-- ..................................................
EX762514       <-- ..................................................
EV568165       <-- ACACCTCTAAGAAGCTCGTGAACGAACTCGTTACTCTGGCATGGGATCTT
EY910869       --> ..................................................
EW721334       --> ..................................................
EV572329       --> ..................................................
EV546450       --> ..................................................
EX766748       --> ..................................................
FD960969       --> ..................................................
EV572956       --> ..................................................

               1401   -   1451
UN21457        --> CGTGGCTTCAAAGATGCAAGAACCAATCTTTGGCTCAGAGACTCCTAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................
EW716425       <-- ..................................................
EV551338       <-- ..................................................
EV567372       <-- ..................................................
EX762514       <-- ..................................................
EV568165       <-- CGTGGCTTCAAAGATGCAAGAACCAATCTTTGGCTCAGAGACTCCTAAGC
EY910869       --> ..................................................
EW721334       --> ..................................................
EV572329       --> ..................................................
EV546450       --> ..................................................
EX766748       --> ..................................................
FD960969       --> ..................................................
EV572956       --> ..................................................

               1451   -   1501
UN21457        --> TGAACTTGGGTTTCTTGCCTTCCTTCACTTTCGGAAGGTTCAACTCCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ..................................................
EW716425       <-- ..................................................
EV551338       <-- ..................................................
EV567372       <-- ..................................................
EX762514       <-- ..................................................
EV568165       <-- TGAACTTGGGTTTCTTGCCTTCCTTCACTTTCGGAAGGTTCAACTCCAGA
EY910869       --> ..................................................
EW721334       --> ..................................................
EV572329       --> ..................................................
EV546450       --> ..................................................
EX766748       --> ..................................................
FD960969       --> ..................................................
EV572956       --> ..................................................

               1501   -   1551
UN21457        --> AAACTTCTCAGCTCATCACTCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~
EY914924       <-- ........................
EW716425       <-- ........................
EV551338       <-- ........................
EV567372       <-- ........................
EX762514       <-- ........................
EV568165       <-- AAACTTCTCAGCTCATCACTCATC
EY910869       --> ........................
EW721334       --> ........................
EV572329       --> ........................
EV546450       --> ........................
EX766748       --> ........................
FD960969       --> ........................
EV572956       --> ........................