-5     -     45
UN21460        --> ......GGACTTCTCCCCCTCTCTTCTATCCTCTCTCTCTGAGCAAAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573375       <-- ....................................attcgtGCAAACAT  Raphanus raphanistrum subsp. landra
EX753795       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX776097       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD969007       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD967546       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944527       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD961823       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX775760       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD948791       --> ......GGACTTCTCCTCCTCTCTTCTTTCTTCTCTCTCTGAACAAAAAT  Raphanus sativus cv Early Scarlet Globe
FD973285       --> ......GGACTTCTCCCCCTCTCTTCTATCCTCTCTCTCTGAGCAAAAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978945       --> ......GGACTTCTCCCCCTCTCTTCTATCCTCTCTCTCTGAGCAAAAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750293       --> ggagacacACTTCTCCCCCTCTCTTCTATCCTCTCTCTCTGAGCAAAAAT  Raphanus raphanistrum subsp. maritimus
FD971401       --> ggagacacACTTCTCCCCCTCTCTTCTATCCTCTCTCTCTGAGCAAAAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568718       --> .............................ggatcctattcgtGCAAACAT  Raphanus raphanistrum subsp. landra
EX772059       --> ..................................ggattcgtGCAAACAT  Raphanus raphanistrum subsp. landra
EX771673       --> ...........................................CAAACAT  Raphanus raphanistrum subsp. landra
FD966316       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX904100       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870

               45     -     95
UN21460        --> GGAAGTGGCTCTTCTCTCATTCTCTTCTTCCCTGTCTCCTCTCTGCCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573375       <-- GGAAGTGGCTCTTCTCTCATTCTCTTCTTCCCTGTCTCCTCTCTGCCACA  Raphanus raphanistrum subsp. landra
EX753795       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX776097       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD969007       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD967546       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944527       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD961823       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX775760       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD948791       --> GGAAGGGGCTCTTCTCTCATTCTCGTCTTCCTTGTCTCCTCTCTGCCACA  Raphanus sativus cv Early Scarlet Globe
FD973285       --> GGAAGTGGCTCTTCTCTCATTTTCTTCTTCCCTGTCTCCTCTCTGCCACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978945       --> GGAAGTGGCTCTTCTCTCATTTTCTTCTTCCCTGTCTCCTCTCTGCCACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750293       --> GGAAGTGTCTCTTCTCTCATTTTCTTCTTCCCTGTCTCCTCTCTGCCACA  Raphanus raphanistrum subsp. maritimus
FD971401       --> GGAAGTGGCTCTTCTCTCATTTTCTTCTTCCCTGTCTCCTCTCTGCCACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568718       --> GGAAGTGGCTCTTCTCTCATTCTCTTCTTCCCTGTCTCCTCTCTGCCACA  Raphanus raphanistrum subsp. landra
EX772059       --> GGAAGTGGCTCTTCTCTCATTCTCTTCTTCCCTGTCTCCTCTCTGCCACA  Raphanus raphanistrum subsp. landra
EX771673       --> GGAAGTGGCTCTTCTCTCATTCTCTTCTTCCCTGTCTCCTCTCTGCCACA  Raphanus raphanistrum subsp. landra
FD966316       --> .................................................t  Raphanus raphanistrum subsp. maritimus
EX904100       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870

               95     -    145
UN21460        --> ACCGAGCCTTAACCCTATCTCCCAAACTCTCCAAATCCCAAAACTACCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573375       <-- ACCGAACCTTAACCCTATCTCCCAAACTCTCCAAATCCCAAAACTACCCT  Raphanus raphanistrum subsp. landra
EX753795       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX776097       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD969007       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD967546       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944527       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD961823       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX775760       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD948791       --> ACCGAACCTTAACCCTAACTCCCAAACTCTCCAAATCCCAAAACTACCCT  Raphanus sativus cv Early Scarlet Globe
FD973285       --> ACCGAGCCTTAACCCTATCTCCCAAACTCTCCAAATCCCAAAACTACCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978945       --> ACCGAGCCTTAACCCTATCTCCCAAACTCTCCAAATCCCAAAACTACCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750293       --> ACCGAGCCTTAACCCTATCTCCCAAACTCTCCAAATCCCAAAACTACCCT  Raphanus raphanistrum subsp. maritimus
FD971401       --> ACCGAGCCTTAACCCTATCTCCCAAACTCTCCAAATCCTAAAACTACCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568718       --> ACCGAACCTTAACCCTATCTCCCAAACTCTCCAAATCCCAAAACTACCCT  Raphanus raphanistrum subsp. landra
EX772059       --> ACCGAACCTTAACCCTATCTCCCAAACTCTCCAAATCCCAAAACTACCCT  Raphanus raphanistrum subsp. landra
EX771673       --> ACCGAACCTTAACCCTATCTCCCAAACTCTCCAAATCCCAAAACTACCCT  Raphanus raphanistrum subsp. landra
FD966316       --> ggCGAGCCTTAACCCTAACTCCCAAACTCTCCAAATCCCAGAACTACCCT  Raphanus raphanistrum subsp. maritimus
EX904100       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870

               145    -    195
UN21460        --> CGTCTCCCTGTCATCAGATCCGCCGTGTCTCGTTCCAAAAAGGAAGAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573375       <-- CGTCTCCCTGTCATCAGATCCGCTGTGTCTCGTTCCAAAA-GGAAGAAAC  Raphanus raphanistrum subsp. landra
EX753795       <-- ...........CATCAGATCCGCCGTGTCTCGTTCCAAAAAGGAAGAAAC  Raphanus raphanistrum subsp. maritimus
EX776097       <-- ............ATCAGATCCGCTGTGTCTCGTTCCAAAAAGGAAGAAAC  Raphanus raphanistrum subsp. landra
FD969007       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD967546       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944527       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD961823       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX775760       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD948791       --> CGTCTCCCTGTCATCAGATCCGCCGTGTCTCTTTCCAAAAAGGAAGAAAC  Raphanus sativus cv Early Scarlet Globe
FD973285       --> CGTCTCCCTGTCATCAGATCCGCCGTGTCTCGTTCCAAAAAGGAAGAAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978945       --> CGTCTCCCTGTCATCAGATCCGCCGTGTCTCGTTCCAAAAAGGAAGAAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750293       --> CGTCTCCCTGTCATCAGATCCGCCGTGTCTCGTTCCAAAAAGGAAGAAAC  Raphanus raphanistrum subsp. maritimus
FD971401       --> CGTCTCCCTGTCATCAGATCCGCCGTGTCTCGTTCCAAAAAGGAAGAAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568718       --> CGTCTCCCTGTCATCAGATCCGCTGTGTCTCGTTCCAAAA-GGAAGAAAC  Raphanus raphanistrum subsp. landra
EX772059       --> CGTCTCCCTGTCATCAGATCCGCTGTGTCTCGTTCCAAAAAGGAAGAAAC  Raphanus raphanistrum subsp. landra
EX771673       --> CGTCTCCCTGTCATCAGATTCGCTGTGTCTCGTTCCAAAAAGGAAGAAAC  Raphanus raphanistrum subsp. landra
FD966316       --> CGTCTCCCTGTCATCAGATCCGCCGTGTCTCGTTCCAAAAAGGAAGAAAC  Raphanus raphanistrum subsp. maritimus
EX904100       --> ...........aggCAGATCCGCCGTGTCTCGTTCCAAAAAGGAAGAAAC  Raphanus sativus cv Rat-Tail Radish #3870

               195    -    245
UN21460        --> CGTCGAGACAGTCAAGTCCCACCTCGAGAAATGCCACCTCCTCGCCGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573375       <-- CGTCGAGACAGTCAAGTCCCACCTCGAGAAATGCCACCTCCTCGCCGCCA
EX753795       <-- CGTGGAGACCGTCAAGTCCCACCTCGAGAATTGCCACCTCCTCGCCGCCA
EX776097       <-- CGTCGAGACAGTCAAGTCCCACCTCGAGAAATGCCACCTCCTCGCCGCCA
FD969007       <-- ..................................................
FD967546       <-- ..................................................
FD944527       <-- ..................................................
FD961823       <-- ..................................................
EX775760       <-- ..................................................
FD948791       --> CGTCGAGACAGTCAAGTCCCGCCTCGAGAAATGCCACCTCCTCGCCGCCA
FD973285       --> CGTCGAGACAGTCAAGTCCCACCTCGAGAAATGCCACCTCCTCGCCGCCA
FD978945       --> CGTGGAGACCGTCAAGTCCCACCTCGAGAATTGCCACCTCCTCGCCGCCA
EX750293       --> CGTGGAGACCGTCAAGTCCCACCTCGAGAATTGCCACCTCCTCGCCGCCA
FD971401       --> CGTCGAGACAGTCAAGTCCCACCTCGAGAAATGCCACCTCCTCGCCGCCA
EV568718       --> CGTCGAGACAGTCAAGTCCCACCTCGAGAAATGCCACCTCCTCGCCGCCA
EX772059       --> CGTCGAGACAGTCAAGTCCCACCTCGAGAAATGCCACCTCCTCGCCGCCA
EX771673       --> CGTCGAGACAGTCAAGTCCCACCTCGAGAAATGCCACCTCCTCGCCGCCA
FD966316       --> CGTCGAGACAGTCAAGTCCCACCTCGAGAAATGCCACCTCCTCGCCGCCA
EX904100       --> CGTCGAGACAGTCAAGTCCCACCTCGAGAAATGCCACCTCCTCGCCGCCA

               245    -    295
UN21460        --> TCAACTACAAAGGCCTCACCGTCAAGCAGTTCCAAGACCTCAGGAGAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573375       <-- TCAACTACAAAGGCCTCACCGTCAAGCAGTTCCAAGACCTCAGGAGAACT
EX753795       <-- TCAACTACAAAGGCCTCACCGTCAAGCAGTTCCAAGACCTCAGGAGAACT
EX776097       <-- TCAACTACACAGGCCTCACCGTCAAGCAGTTCCAAGACCTCAGGAGAACT
FD969007       <-- ..................................................
FD967546       <-- ..................................................
FD944527       <-- ..................................................
FD961823       <-- ..................................................
EX775760       <-- ..................................................
FD948791       --> TCAACTACAAAGGCCTCACCGTCAAGCAGTTCCAAGACCTCAGGAGAACT
FD973285       --> TCAACTACAAAGGCCTCACCGTCAAGCAGTTCCAAGACCTCAGGAGAACT
FD978945       --> TCAACTACAAAGGCCTCACCGTCAAGCAGTTCCAAGACCTCAGGAGAACT
EX750293       --> TCAACTACAAAGGCCTCACCGTCAAGCAGTTCCAAGACCTCAGGAGAACT
FD971401       --> TCAACTACAAAGGCCTCACCGTCAAGCAGTTCCAAGACCTCAGGAGAACT
EV568718       --> TCAACTACAAAGGCCTCACCGTCAAGCAGTTCCAAGACCTCAGGAGAACT
EX772059       --> TCAACTACACAGGCCTCACCGTCAAGCAGTTCCAAGACCTCAGGAGAACT
EX771673       --> TCAACTACAAAGGCCTCACCGTCAAGCAGTTCCAAGACCTCAGGAGAACT
FD966316       --> TCAACTACAAAGGCCTCACCGTCAAGCAGTTCCAAGACCTCAGGAGAACT
EX904100       --> TCAACTACAAAGGCCTCACCGTCAAGCAGTTCCAAGACCTCAGGAGAACT

               295    -    345
UN21460        --> CTCCCCGACACAACAAAACTCGTCGTCGCCAAGAACACTTTGGTCATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573375       <-- CTCCCCGACACAACAAAACTCGTCGTCGCCAAGAACACTTTGGTCATCAA  Raphanus raphanistrum subsp. landra
EX753795       <-- CTCCCCGACACAACAAAGCTCGTCGTCGCCAAGAACACTTTGGTCATCAA  Raphanus raphanistrum subsp. maritimus
EX776097       <-- CTCCCCGACACAACAAAACTCGTCGTCGCCAAGAACACTTTGGTCATCAA  Raphanus raphanistrum subsp. landra
FD969007       <-- ......................TCGTCGCCAAGAACACTTTGGTCATCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD967546       <-- .........................TCGCCAAGAACACTTTGGTCATCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944527       <-- ...........................GCCAAGAACACTTTGGTCATCAA  Raphanus sativus cv Early Scarlet Globe
FD961823       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX775760       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD948791       --> CTCCCCGACACAACAAAACTCGTCGTCGCCAAGAACACTTTGGTCATCAA  Raphanus sativus cv Early Scarlet Globe
FD973285       --> CTCCCCGACACAACAAAGCTCGTCGTCGCCAAGAACACTTTGGTCATCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978945       --> CTCCCCGACACAACAAAGCTCGTCGTCGCCAAGAACACTTTGGTCATCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750293       --> CTCCCCGACACAACAAAGCTCGTCGTCGCCAAGAACACTTTGGTCATCAA  Raphanus raphanistrum subsp. maritimus
FD971401       --> CTCCCCGACACAACAAAGCTCGTCGTCGCCAAGAACACTTTGGTCATCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568718       --> CTCCCCGACACAACAAAACTCGTCGTCGCCAAGAACACTTTGGTCATCAA  Raphanus raphanistrum subsp. landra
EX772059       --> CTCCCCGACACAACAAAACTCGTCGTCGCCAAGAACACTTTGGTCATCAA  Raphanus raphanistrum subsp. landra
EX771673       --> CTCCCCGACACAACAAAACTCGTCGTCGCCAAGAACACTTTGGTCATCAA  Raphanus raphanistrum subsp. landra
FD966316       --> CTCCCCGACACAACAAAACTCGTCGTCGCCAAGAACACTTTGGTCATCAA  Raphanus raphanistrum subsp. maritimus
EX904100       --> CTCCCCGACACAACAAAACTCGTCGTCGCCAAGAACACTTTGGTCATCAA  Raphanus sativus cv Rat-Tail Radish #3870

               345    -    395
UN21460        --> AGCCATCGAAGGCACCAAATGGGAAGCTCTCAAGCCTTGTATGAAAGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573375       <-- AGCCATCGAAGGCACCAAATGGGAAGCTCTCAAGCCTTGTATGAAAGGCA
EX753795       <-- AGCCATCGAAGGCACCAAATGGGAAGCTCTCAAGCCTTGTATGAAAGGCA
EX776097       <-- AGCCATCGAAGGCACCAAATGGGAAGCTCTCAAGCCTTGTATGAAAGGCA
FD969007       <-- AGCCATCGAAGGCACCAAATGGGAAGCTCTCAAGCCTTGTATGAAAGGCA
FD967546       <-- AGCCATCGAAGGCACCAAATGGGAAGCTCTCAAGCCTTGTATGAAAGGCA
FD944527       <-- AGCCATCGAAGGCACCAAATGGGAAGCTCTCAAGCCTTGTATGAAAGGCA
FD961823       <-- ..................................................
EX775760       <-- ..................................................
FD948791       --> AGCCATCGAAGGCACCAAATGGGAAGCTCTCAAGCCTTGTATGAAAGGCA
FD973285       --> AGCCATCGAAGGCACCAAATGGGAAGCTCTCAAGCCTTGTATGAAAGGCA
FD978945       --> AGCCATCGAAGGCACCAAATGGGAAGCTCTCAAGCCTTGTATGAAAGGCA
EX750293       --> AGCCATCGAAGGCACCAAATGGGAAGCTCTCAAGCCTTGTATGAAAGGCA
FD971401       --> AGCCATCGAAGGCACCAAATGGGAAGCTCTCAAGCCTTGTATGAAAGGCA
EV568718       --> AGCCATCGAAGGCACCAAATGGGAAGCTCTCAAGCCTTGTATGAAAGGCA
EX772059       --> AGCCATCGAAGGCACCAAATGGGAAGCTCTCAAGCCTTGTATGAAAGGCA
EX771673       --> AGCCATCGAAGGCACCAAATGGGAAGCTCTCAAGCCTTGTATGAAAGGCA
FD966316       --> AGCCATCGAAGGCACCAAATGGGAAGCTCTCAAGCCTTGTATGAAAGGCA
EX904100       --> AGCCATCGAAGGCACCAAATGGGAAGCTCTCAAGCCTTGTATGAAAGGCA

               395    -    445
UN21460        --> TGAACGCTTGGCTCTTTGTCCAGACCGATGAGATCCCTTCCGCCATCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573375       <-- TGAACGCTTGGCTCTTTGTCCAGACCGATGAGATCCCTTCCGCCATCAAA  Raphanus raphanistrum subsp. landra
EX753795       <-- TGAACGCTTGGCTCTTTGTCCAGACCGATGAGATTCCTTCAGCCATCAAA  Raphanus raphanistrum subsp. maritimus
EX776097       <-- TGAACGCTTGGCTCTTTGTCCAGACCGATGAGATCCCTTCCGCCATCAAA  Raphanus raphanistrum subsp. landra
FD969007       <-- TGAACGCTTGGCTCTTTGTCCAGACCGATGAGATCCCTTCCGCCATCAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD967546       <-- TGAACGCTTGGCTCTTTGTCCAGACCGATGAGATCCCTTCCGCCATCAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944527       <-- TGAACGCTTGGCTCTTTGTCCAGACCGATGAGATCCCTTCTGCCATCAAA  Raphanus sativus cv Early Scarlet Globe
FD961823       <-- .................................TCCCTTCTGCCATCAAA  Raphanus raphanistrum subsp. maritimus
EX775760       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD948791       --> TGAACGCTTGGCTCTTTGTCCAGACCGATGAGATCCCTTCTGCCATCAAA  Raphanus sativus cv Early Scarlet Globe
FD973285       --> TGAACGCTTGGCTCTTTGTCCAGACCGATGAGATCCCTTCCGCCATCAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978945       --> TGAACGCTTGGCTCTTTGTCCAGACCGATGAGATTCCTTCAGCCATCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750293       --> TGAACGCTTGGCTCTTTGTCCAGACCGATGAGATTCCTTCAGCCATCAAA  Raphanus raphanistrum subsp. maritimus
FD971401       --> TGAACGCTTGGCTCTTTGTCCAGACCGATGAGATCCCTTCCGCCATCAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568718       --> TGAACGCTTGGCTCTTTGTCCAGACCGATGAGATCCCTTCCGCCATCAAA  Raphanus raphanistrum subsp. landra
EX772059       --> TGAACGCTTGGCTCTTTGTCCAGACCGATGAGATCCCTTCCGCCATCAAA  Raphanus raphanistrum subsp. landra
EX771673       --> TGAACGCTTGGCTCT...................................  Raphanus raphanistrum subsp. landra
FD966316       --> TGAACGCTTGGCTCTTTGTCCAGACCGATGAGATCCCTTCTGCCATCAAA  Raphanus raphanistrum subsp. maritimus
EX904100       --> TGAACGCTTGGCTCTTTGTCCAGACCGATGAGATCCCTTCTGCCATCAAA  Raphanus sativus cv Rat-Tail Radish #3870

               445    -    495
UN21460        --> CCTTACCGGAGTTTCCAAAAGGAACGCAAGCTCGAAGACAATGACTTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573375       <-- CCTTACCGGAGTTTCCAAAAGGAACGCAAGCTCGAAGACAATGACTTTGC  Raphanus raphanistrum subsp. landra
EX753795       <-- CCTTACCGTAGTTTCCAAAAGGAACGCAAGCTCGAAGACAATGACTTTGC  Raphanus raphanistrum subsp. maritimus
EX776097       <-- CCTTACCGGAGTTTCCAAAAGGAACGCAAGCTCGAAGACAATGACTTTGC  Raphanus raphanistrum subsp. landra
FD969007       <-- CCTTACCGGAGTTTCCAAAAGGAACGTAAGCTCGAAGACAATGACTTTGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD967546       <-- CCTTACCGGAGTTTCCAAAAGGAACGTAAGCTCGAAGACAATGACTTTGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944527       <-- CCTTACCGGAGTTTCCAAAAGGAACGCAAGCTCGAAGACAATGACTTTAC  Raphanus sativus cv Early Scarlet Globe
FD961823       <-- CCTTACCGGAGTTTCCAAAAGGAACGCAAGCTCGAAGACAATGACTTTGC  Raphanus raphanistrum subsp. maritimus
EX775760       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD948791       --> CCTTACCGGAGTTTCCAAAAGGAACGCAAGCTCGAAGACAATGACTTTGC  Raphanus sativus cv Early Scarlet Globe
FD973285       --> CCTTACCGGAGTTTCCAAAAGGAACGTAAGCTCGAAGACAATGACTTTGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978945       --> CCTTACCGGAGTTTCCAAAAGGAACGCAAGCTCGAAGACAATGACTTTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750293       --> CCTTACCGTAGTTTCCAAAAGGAACGCAAGCTCGAAGACAATGACTTTGC  Raphanus raphanistrum subsp. maritimus
FD971401       --> CCTTACCGGAGTTTCCAAAAGGAACGTAAGCTCGAAGACAATGACTTTGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568718       --> CCTTACCGGAGTTTCCAAAAGGAACGCAAGCTCGAAGACAATGACTTTGC  Raphanus raphanistrum subsp. landra
EX772059       --> CCTTACCGGAGTTTCCAAAAGGAACGCAAGCTCGAAGACAATGACTTTGC  Raphanus raphanistrum subsp. landra
EX771673       --> ..................................................  Raphanus raphanistrum subsp. landra
FD966316       --> CCTTACCGGAGTTTCCAAAAGGAACGCAAGCTCGAAGACAATGACTTTGC  Raphanus raphanistrum subsp. maritimus
EX904100       --> CCTTACCGGAGTTTCCAAAAGGAACGCAAGCTCGAAGACAATGACTTTGC  Raphanus sativus cv Rat-Tail Radish #3870

               495    -    545
UN21460        --> AGGCGCTGTCTTTGAAGGTAAGTTCTACGCTCCTGACAACTTCAAAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573375       <-- AGGCGCTGTCTTTGAAGGTAAGTTCTACGCTCCTGACAACTTCAAAGCTC  Raphanus raphanistrum subsp. landra
EX753795       <-- AGGCGCTGTCTTTGAAGGTAAGTTCTACGCTCCTGACAACTTCAAAGCTC  Raphanus raphanistrum subsp. maritimus
EX776097       <-- AGGCGCTGTCTTTGAAGGTAAGTTCTACGCTCCTGACAA--CAAAAGCTC  Raphanus raphanistrum subsp. landra
FD969007       <-- AGGCGCCGTCTTTGAAGGTAAGTTCTACGCTCCTGACAACTTCAAAGCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD967546       <-- AGGCGCCGTCTTTGAAGGTAAGTTCTACGCTCCTGACAACTTCAAAGCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944527       <-- AGGCGCTGTCTTTGAAGGTAAGTTATACGCTCCTGACAACTTCAAAGCTG  Raphanus sativus cv Early Scarlet Globe
FD961823       <-- AGGCGCTGTCTTTGAAGGTAAGTTTTACGCTCCTGACAACTTCAAAGCTC  Raphanus raphanistrum subsp. maritimus
EX775760       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD948791       --> AGGCGCTGTCTTTGAAGGTAAGTTCTACGCTCCTGACAACTTCAAAGCTC  Raphanus sativus cv Early Scarlet Globe
FD973285       --> AGGCGCCGTCTTTGAAGGTAAGTTCTACGCTCCTGACAACTTCAAAGCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978945       --> AGGCGCTGTCTTTGAAGGTAAGTTCTACGCTCCTGACAACTTCAAAGCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750293       --> AGGCGCTGTCTTTGAAGGTAAGTTCTACGCTCCTGACAACTTCAAAGCTC  Raphanus raphanistrum subsp. maritimus
FD971401       --> AGGCGCCGTCTTTGAAGGTAAGTTCTACGCTCCTGACAACTTCAAAGCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568718       --> AGGCGCTGTCTTTGAAGGTAAGTTCTACGCTCCTGACAACTTCAAAGCTC  Raphanus raphanistrum subsp. landra
EX772059       --> AGGCGCTGTCTTTGAAGGTAAGTTCTACGCTCCTGACAAC--AAAAGCTC  Raphanus raphanistrum subsp. landra
EX771673       --> ..................................................  Raphanus raphanistrum subsp. landra
FD966316       --> AGGCGCTGTCTTTGAAGGTAAGTTCTACGCTCCTGACAACTTCAAAGCTC  Raphanus raphanistrum subsp. maritimus
EX904100       --> AGGCGCTGTCTTTGAAGGTAAGTTCTACGCTCCTGACAACTTCAAAGCTC  Raphanus sativus cv Rat-Tail Radish #3870

               545    -    595
UN21460        --> TGGAGACCATGCCTACTCGTGCTGAGGTCTACGCTAAGATGCTCGGAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573375       <-- TGGAGACCATGCCTACTCGTGCTGAGGTCTACGCTAAGATGCTCGGAGCT
EX753795       <-- TGGAGACCATGCCTACTCGTGCTGAGGTATACGCTAAGATGCTCGGAGCT
EX776097       <-- TGGAGACCATGCCTACTCGTGCTGAGGTCTACGCTAAGATGCTCGGAGCT
FD969007       <-- TGGAGACCATGCCTACTCGTGCTGAGGTTTAC..................
FD967546       <-- TGGAGACCATGCCTACTCGTGCTGAGGTCTACGCTAAGATGCTCGGAGCT
FD944527       <-- TGGAGACCATGCCTACTCGTGCTGAGGTCTACGCTAAGATGCTCGGAGCT
FD961823       <-- TGGAGACCATGCCTACTCGTGCTGAGGTTTACGCTAAGATGCTCGGAGCT
EX775760       <-- ..................................................
FD948791       --> TGGAGACCATGCCTACTCGTGCTGAGGTCTACGCTAAGATGCTCGGAGCT
FD973285       --> TGGAGACCATGCCTACTCGTGCTGAGGTCTACGCTAAGATGCTCGGAGCT
FD978945       --> TGGAGACCATGCCTACTCGTGCTGAGGTATACGCTAAGATGCTCGGAGCT
EX750293       --> TGGAGACCATGCCTACTCGTGCTGAGGTATACGCTAAGATGCTCGGAGCT
FD971401       --> TGGAGACCATGCCTACTCGTGCTGAGGTCTACGCTAAGATGCTCGGAGCT
EV568718       --> TGGAGACCATGCCTACTCGTGCTGAGGTCTACGCTAAGATGCTCGGAGCT
EX772059       --> TGGAGACCATGCCTACTCGTGCTGAGGTCTACGCTAAGATGCTCGGAGCT
EX771673       --> ..................................................
FD966316       --> TGGAGACCATGCCTACTCGTGCTGAGGTCTACGCTAAGATGCTCGGAGCT
EX904100       --> TGGAGACCATGCCTACTCGTGCTGAGGTCTACGCTAAGATGCTCGGAGCT

               595    -    645
UN21460        --> CTGCAGAGTCCGGCCATTAACCTCGTCTCTACGTTGCAAGCACCAGCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573375       <-- CTGCAGAGTCCGGCCATTAATCTCGTCTCTACGTTGCAAGCACCAGCTAT  Raphanus raphanistrum subsp. landra
EX753795       <-- CTGCAGAGTCCGGCCATTAACCTCGTCTCTACGTTACAAGCACCAGCTAT  Raphanus raphanistrum subsp. maritimus
EX776097       <-- CTGCAGAGTCCGGCCATTAATCTCGTCTCTACGTTGCAAGCACCAGCTAT  Raphanus raphanistrum subsp. landra
FD969007       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD967546       <-- CTGCAGAGTCCGGCCATTAACCTCGTCTCTACGTTACAAGCACCAGCTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944527       <-- CTGCAGAGTCCGGCCATTAACCTCGT........................  Raphanus sativus cv Early Scarlet Globe
FD961823       <-- CTGCAGAGTCCGGCCATTAACCTCGTCTTTACGTTGCAAGCACCAGCTAT  Raphanus raphanistrum subsp. maritimus
EX775760       <-- ............................tTACGTTGCAAGCACCAGCTAT  Raphanus raphanistrum subsp. landra
FD948791       --> CTGCAGAGTCCGGCCATTAACCTCGTCTCTAC..................  Raphanus sativus cv Early Scarlet Globe
FD973285       --> CTGCAGAGTCCGGCCATTAACCTCGTCTCTACGTTACAAGCACCAGCTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978945       --> CTGCAGAGTCCGGCCATTAACCTCGTCTCTACGTTACAAGCACCAGCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750293       --> CTGCAGAGTCCGGCCATTAACCTCGTCTCTACGTTACAAGCACCAGCTAT  Raphanus raphanistrum subsp. maritimus
FD971401       --> CTGCAGAGTCCGGCCATTAACCTCGTCTCTACGTTACAAGCACCAGCTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568718       --> CTGCAGAGTCCGGCCATTAATCTCGTCTCTACGTTGCAAGCACCAGCTAT  Raphanus raphanistrum subsp. landra
EX772059       --> CTGCAGAGTCCGGCCATTAATCTCGTCTCTACGTTGCAAGCACCAGCTAT  Raphanus raphanistrum subsp. landra
EX771673       --> ..................................................  Raphanus raphanistrum subsp. landra
FD966316       --> CTGCAGAGTCCGGCCATTAACCTCGTCTCTACGTTGCAAGCACCAGCTAT  Raphanus raphanistrum subsp. maritimus
EX904100       --> CTGCAGAGTCCGGCCATTAACCTCGTCTCTACGTTGCAAG-ACCAGCTAT  Raphanus sativus cv Rat-Tail Radish #3870

               645    -    695
UN21460        --> TGAGGTTATCATGGTGCTCAAGGCTTATGTCAAGAAGCTAGAAGATGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573375       <-- TGAGGTTATCATGGTGCTCAAGGCTTATGTCAAGAAGCTAGAAGATGAGA
EX753795       <-- TGAGGTTATCATGGTGCTCAAGGCTTATGTCAAGAAGCTAGAAGATGAGA
EX776097       <-- TGAGGTTATCATGGTGCTCAAGGCTTATGTCAAGAAGCTAGAAGATGAGA
FD969007       <-- ..................................................
FD967546       <-- TGAGGTTATCATGGTACTTAAGGCTTATGTC...................
FD944527       <-- ..................................................
FD961823       <-- TGAGGTTATCATGGTGCTCAAGGCTTATGTCAAGAAGCTAGAAGATGAGA
EX775760       <-- TGAGGTTATCATGGTGCCCAAGGCTTATGTCAAGAAGCTAGAAGATGAGA
FD948791       --> ..................................................
FD973285       --> TGAGGTTATCATGGTACTTAAAGCTTATGTCAAGAAGTTAGAAGATGAGA
FD978945       --> TGAG-TTATCATGGTGCTCAAG-CTTATGTCAg.................
EX750293       --> TGAGGTTATCATGGTGCTCAAG-CTTATGTCAAGAAGCTAGAAGATGAGA
FD971401       --> TGAGGTTATCATGGTac.................................
EV568718       --> TGAGGTTATCATGGTGCTCAAGGCTTATGTCAAGAAGCTAGAAGATGAGA
EX772059       --> TGAGGTTATCATGGTGCTCAAG-CTTATGTCAAGAAGCTAGAAGATGAGA
EX771673       --> ..................................................
FD966316       --> TGAGGTTATCATGGTGCTCAAGGCTTATGTCAAGAAGCTAGAAGATGAGA
EX904100       --> TGAGGTTATCATGGTGCTCAAGGCTTATGTCAAGAAGCTAGAAGATGAGA

               695    -    745
UN21460        --> GTAATGCTGCATAGC-TAGTT-T-AAGTAAAGCTGTACTAATCTCAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573375       <-- GTAATGCTGCATAGC-TAGTT-T-AAGTAAAGCTGTACTAATCTCAGAGA  Raphanus raphanistrum subsp. landra
EX753795       <-- GTAATGCTGCATAACTTAGTT-T-AAGTAAAGCTGTACTAATCTCAGAGA  Raphanus raphanistrum subsp. maritimus
EX776097       <-- GTAATGCTGCATAGC-TAGTT-T-AAGTAAAGCTGTACTAATCTCAGAGA  Raphanus raphanistrum subsp. landra
FD969007       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD967546       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944527       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD961823       <-- GTAATGCTGCATAAC-TAGTT-TTAAGTAAAGCTGTACTAATCTCAGAGA  Raphanus raphanistrum subsp. maritimus
EX775760       <-- GTAATGCTGCATAGC-TAGTT-T-AAGTAAAGCTGTACTAATTTCAGAGA  Raphanus raphanistrum subsp. landra
FD948791       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD973285       --> GTAATGCTGCATAac...................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978945       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750293       --> GTA-TGCTGCATAACTTAGTT-T-AAGTAAAGCTGTACTAATCTCAGAGA  Raphanus raphanistrum subsp. maritimus
FD971401       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568718       --> GTAATGCTGCATAGC-TAGTT-T-AAGTAAAGCTGTACTAATCTCAGAGA  Raphanus raphanistrum subsp. landra
EX772059       --> GTAATGCTGCATAGC-TAGTT-T-AAGTAAAGCTGTACTAATCTCAGAGA  Raphanus raphanistrum subsp. landra
EX771673       --> ..................................................  Raphanus raphanistrum subsp. landra
FD966316       --> GTAATGCTGCATAAC-TAGTT-Tt..........................  Raphanus raphanistrum subsp. maritimus
EX904100       --> GTAATGCTGCATAAC-TAGTTCT-AAGTAAAGCTGTACTAATCTCAGAGA  Raphanus sativus cv Rat-Tail Radish #3870

               745    -    795
UN21460        --> ATGTAATGTACTAAGCAAAGCAAAACTCAAACTTTTTGTTTTTGTCTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573375       <-- ATGTAATGTACTAAGCAAAGCAAAACTCAAACTTTTTGTTTTTGTCTATG
EX753795       <-- ACGTAATGTACTAAGCAAAGCAAAATTCAAACTTTTTGTTTTTGTCTATG
EX776097       <-- ATGTAGTGTACTAAGCAAAGCAAAACTCAAACTTTTTGTTTTTGTCTATG
FD969007       <-- ..................................................
FD967546       <-- ..................................................
FD944527       <-- ..................................................
FD961823       <-- ATGTAATGTACTAAGCAAAGCAA...........................
EX775760       <-- ATGTAATGTATTAAGCAAAGCAAAACTCAAACTTTTTGTTTTTGTTTATG
FD948791       --> ..................................................
FD973285       --> ..................................................
FD978945       --> ..................................................
EX750293       --> ACGTAATGTACTAAGCAAAGCA............................
FD971401       --> ..................................................
EV568718       --> ATGTAATGTACTAAGCAAAGCAAAACTCAAACTTTTTGTTTTTGTCTATG
EX772059       --> ATGTAGTGTACTAAGCAAAGCAAA..........................
EX771673       --> ..................................................
FD966316       --> ..................................................
EX904100       --> ATGTAATGTACTAAGCAAAGCAA...........................

               795    -    845
UN21460        --> ACTCGAGCAGCAATGTTTTTATTGTTATTACAGTCATTGGGTTTTATTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573375       <-- ACTCGAGCAGCAATGTTTTTATTGTTATTACAGccg..............
EX753795       <-- ACTCGAGCAGCAATGTTTTTATTGTTATTACAGTCATTGGGTTTTt....
EX776097       <-- ACTCGAGCAGCAATGTTTTTATTGTTATTACAGTCATTGGGTTTTATTGA
FD969007       <-- ..................................................
FD967546       <-- ..................................................
FD944527       <-- ..................................................
FD961823       <-- ..................................................
EX775760       <-- ACTCGAGCAGCAATGTTTTTATTGTTATTACAGTCATTGGGTTTTATTGA
FD948791       --> ..................................................
FD973285       --> ..................................................
FD978945       --> ..................................................
EX750293       --> ..................................................
FD971401       --> ..................................................
EV568718       --> ACTCGAGCAGCAATGTTTTTATTGTTATTACAGccg..............
EX772059       --> ..................................................
EX771673       --> ..................................................
FD966316       --> ..................................................
EX904100       --> ..................................................

               845    -    895
UN21460        --> AATGTTGCTGCTATGCTGTGCTATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573375       <-- ..........................
EX753795       <-- ..........................
EX776097       <-- AATGTTGCTGCTATGCTGTGCTATCT
FD969007       <-- ..........................
FD967546       <-- ..........................
FD944527       <-- ..........................
FD961823       <-- ..........................
EX775760       <-- AATGTTGCTGCTATGCTATGC.....
FD948791       --> ..........................
FD973285       --> ..........................
FD978945       --> ..........................
EX750293       --> ..........................
FD971401       --> ..........................
EV568718       --> ..........................
EX772059       --> ..........................
EX771673       --> ..........................
FD966316       --> ..........................
EX904100       --> ..........................