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Alignment for radish unigene UN21473

               1      -     51
UN21473        --> GGATACAATTTCTGAGATATCTCCGCTTTGTCCTCTGCTTCGTGTCATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- ..................................................
EV570773       <-- ..................................................
EV570774       <-- ..................................................
EX769061       <-- ..................................................
EY902161       <-- ..................................................
FD942653       <-- ..................................................
EX752470       <-- ..................................................
FD573958       <-- ..................................................
EY925907       <-- ..................................................
EY905598       --> GGATACAATTTCTGAGATATCTCCGCTTTGTCCTCTGCTTCGTGTCATTT
EY905816       --> ...........ggGAGATATCTCCGCTTTGTCCTCTGCTTCGTGTCATTT
FD946548       --> ...........ggGAGATATCTCCGCTTTGTCCTCTGCTTCGTGTCATTT
EX765271       --> ................ggATCTCCGCTTTGTCCTCTGCTTCGTGTCATTT
EV565466       --> ..................................................

               51     -    101
UN21473        --> TTTTT-CGCAGATCTCGAAGAGAGCCCAGTAAAAAAGGTTCGTTTTTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- ...................ttttggcagagtAAAAAGGTTCGTTTT-CTC
EV570773       <-- ..................................................
EV570774       <-- ..................................................
EX769061       <-- ..................................................
EY902161       <-- ..................................................
FD942653       <-- ..................................................
EX752470       <-- ..................................................
FD573958       <-- ..................................................
EY925907       <-- ..................................................
EY905598       --> TTTT--CGCAGATCTTGAAGAGAGCCCAGTAAAAAAGGTTCGTTTTTCTC
EY905816       --> TTTT--CGCAGATCTCGAAGAGAGCCCAGTAAAAAAGGTTCGTTTTTCTC
FD946548       --> TTTTTTCGCAGATCTCGAAGAGAGCCCAGTAAAAAAGGTTCGTTTTTCTC
EX765271       --> TTTTT-CGCAGATCTCGAAGAGAGCCCAGTAAAAAAGGTTCGTTTTTCTC
EV565466       --> ..................................................

               101    -    151
UN21473        --> GATGGGTTCTTCGTCGGGGCAACCCGAGTTTGATTACTTGTTCAAAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- GATGGGTTCTTCGTCGGGGCAACCCGAGTTTGAT-ACTTGTTCAAAGTTT
EV570773       <-- ..........ggGTCGGGGCAACCCGAGTTTGATTACTTGTTCAAAGTTT
EV570774       <-- ..........ggGTCGGGGCAACCCGAGTTTGATTACTTGTTCAAAGTTT
EX769061       <-- ....................AACCCTAGTTTGATTACTTGTTCAAAGTTC
EY902161       <-- .........................GAGTTTGATTACTTGTTCAAAGTTT
FD942653       <-- ..................................................
EX752470       <-- ..................................................
FD573958       <-- ..................................................
EY925907       <-- ..................................................
EY905598       --> GATGGGTTCTTCGTCGGGGCAACCCGAGTTTGATTACTTGTTCAAAGTTT
EY905816       --> GATGGGTTCTTCGTCGGGGCAACCCGAGTTTGATTACTTGTTCAAAGTTT
FD946548       --> GATGGGTTCTTCGTCGGGGCAACCCGAGTTTGATTACTTGTTCAAAGTTC
EX765271       --> GATGGGTTCTTCGTCGGGGCAACCCTAGTTTGATTACTTGTTCAAAGTTC
EV565466       --> ..................................................

               151    -    201
UN21473        --> TATTGATCGGAGATTCTGGTGTTGGCAAAAGCTCTCTTTTGCTTAGTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- TATTGATCGGAGATTCTGGTGTTGGCAAAAGCTCTCTTTTGCTTAGTTTC
EV570773       <-- TATTGATCGGAGATTCTGGTGTTGGCAAAAGCTCTCTTTTGCTTAGTTTC
EV570774       <-- TATTGATCGGAGATTCTGGTGTTGGCAAAAGCTCTCTTTTGCTTAGTTTC
EX769061       <-- TATTGATCGGAGATTCTGGTGTTGGCAAAAGCTCTCTTTTGCTTAGTTTC
EY902161       <-- TATTGATCGGAGATTCTGGTGTTGGCAAAAGCTCTCTTTTGCTTAGTTTC
FD942653       <-- .......CGGAGATTCTGGTGTTGGCAAAAGCTCTCTTTTGCTTAGTTTC
EX752470       <-- .................................CTCTTTTGCTTAGTTTC
FD573958       <-- ..................................................
EY925907       <-- ..................................................
EY905598       --> TATTGATCGGAGATTCTGGTGTTGGCAAAAGCTCTCTTTTGCTTAGTTTC
EY905816       --> TATTGATCGGAGATTCTGGTGTTGGCAAAAGCTCTCTTTTGCTTAGTTTC
FD946548       --> TATTGATCGGAGATTCTGGTGTTGGCAAAAGCTCTCTTTTGCTTAGTTTC
EX765271       --> TATTGATCGGAGATTCTGGTGTTGGCAAAAGCTCTCTTTTGCTTAGTTTC
EV565466       --> ..................................................

               201    -    251
UN21473        --> ACATCCAATACGTTTGATGATCTTTCTCCC-ACAATCGGAGTTGATTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- ACATCCAATACGTTTGATGATCTTTCTCCC-ACAATCGGAGTTGATTTCA
EV570773       <-- ACATCCAATACGTTTGATGATCTTTCTCCC-ACAATCGGAGTTGATTTCA
EV570774       <-- ACATCCAATACGTTTGATGATCTTTCTCCC-ACAATCGGAGTTGATTTCA
EX769061       <-- ACATCCAATACGTTTGATGATCTTTCTCCCCACAATCGGAGTTGATTTCA
EY902161       <-- ACATCCAATACGTTTGATGATCTTTCTCCCCACAATCGGGGTTGATTTCA
FD942653       <-- ACATCCAATACGTTTGATGATCTTTCTCCC-ACAATCGGAGTTGATTCCA
EX752470       <-- ACATCCAATACGTTTGATGATCTTTCTCCC-ACAATCGGAGTTGATTTCA
FD573958       <-- ..................................................
EY925907       <-- ..................................................
EY905598       --> ACATCCAATACGTTTGATGATCTTTCTCCC-ACAATCGGGGTTGATTTCA
EY905816       --> ACATCCAATACGTTTGATGATCTTTCTCCC-ACAATCGGGGTTGATTTCA
FD946548       --> ACATCCAATACGTTTGATGATCTTTCTCCC-ACAATCGGAGTTGATTCCA
EX765271       --> ACATCCAATACGTTTGATGATCTTTCTCCC-ACAATCGGAGTTGATTTCA
EV565466       --> ..................................................

               251    -    301
UN21473        --> AAGTCAAATATCTTACCATTGGAGAGAAGAAACTGAAGCTTGCGATTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- AGGTCAAATATCTTACCATTGGAGAGAAGAAACTGAAGCTTGCGATTTGG  Raphanus raphanistrum subsp. maritimus
EV570773       <-- AAGTCAAATATCTTACCATTGGAGAGAAGAAACTGAAGCTTGCGATTTGG  Raphanus raphanistrum subsp. landra
EV570774       <-- AAGTCAAATATCTTACCATTGGAGAGAAGAAACTGAAGCTTGCGATTTGG  Raphanus raphanistrum subsp. landra
EX769061       <-- AAGTCAAATATCTTACCATTGGAGAGAAGAAACTGAAGCTTGCGATTTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902161       <-- AGGTCAAATATCTTACCATTGGAGAGAAGAAACTGAAGCTTGCGATTTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD942653       <-- AAGTCAAATATCTTACCATTGGAGAGAAGAAACTGAAGCTTGCGATTTGG  Raphanus sativus cv Early Scarlet Globe
EX752470       <-- AGGTCAAATATCTTACCATTGGAGAGAAGAAACTGAAGCTTGCGATTTGG  Raphanus raphanistrum subsp. maritimus
FD573958       <-- ...........CTTACCATTGGAGAGAAGAAACTGAAGCTTGCGATTTGG  Raphanus sativus cv Early Scarlet Globe
EY925907       <-- ..................................................  Raphanus sativus var. oleiformis
EY905598       --> AGGTCAAATATCTTACCATTGGAGAGAAGAAATTGAAGCTTGCGATTTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905816       --> AGGTCAAATATCTTACCATTGGAGAGAAGAAACTGAAGCTTGCGATTTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946548       --> AAGTCAAATATCTTACCATTGGAGAGAAGAAACTGAAGCTTGCGATTTGG  Raphanus sativus cv Early Scarlet Globe
EX765271       --> AAGTCAAATATCTTACCATTGGAGAGAAGAAACTGAAGCTTGCGATTTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565466       --> ..................................................  Raphanus raphanistrum subsp. landra

               301    -    351
UN21473        --> GACACAGCTGGGCAAGAGAGATTTAGGACGTTAACAAGTTCGTATTACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- GACATAGCTGGGCAAGAGAGATTTAGGACGCTAACAAGTTCGTATTACAG
EV570773       <-- GACACAGCTGGGCAAGAGAGGTTTAGGACGTTAACAAGTTCGTATTACAG
EV570774       <-- GACACAGCTGGGCAAGAGAGGTTTAGGACGTTAACAAGTTCGTATTACAG
EX769061       <-- GACACAGCTGGGCAAGAGAGATTTAGGACGTTAACAAGTTCGTATTACAG
EY902161       <-- GACACAGCTGGGCAAGAGAGATTTAGGACGTTAACAAGTTCGTATTACAG
FD942653       <-- GACACAGCTGGGCAAGAGAGATTTAGGACGTTAACAAGTTCGTATTACAG
EX752470       <-- GACACAGCTGGGCAAGAGAGATTTAGGACGCTAACAAGTTCGTATTACAG
FD573958       <-- GACACAGCTGGGCAAGAGAGATTTAGGACGTTAACAAGTTCGTATTACAG
EY925907       <-- ............................................TTACAG
EY905598       --> GACACAGCTGGGCAAGAGAGATTTAGGACGTTAACAAGTTCGTATTACAG
EY905816       --> GACACAGCTGGGCAAGAGAGATTTAGGACGTTAA................
FD946548       --> GACACAGCTGGGCAAGAGAGATTTAGGACGTTAACAAGTTCGTATTACAG
EX765271       --> GACACAGCTGGGCAAGAGAGATTTAGGACGTTAACAAGTTCGTATTACAG
EV565466       --> ..................................................

               351    -    401
UN21473        --> AGGAGCTCAGGGCATCATAATGGTATATGATGTGACACGACGAGATACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- AGGAGCTCAGGGCATCATAATGGTATATGATGTGACACGACGAGATACAT
EV570773       <-- AGGAGCTCAGGGCATCATAATGGTATATGATGTGACACGACGAGATACAT
EV570774       <-- AGGAGCTCAGGGCATCATAATGGTATATGATGTGACACGACGAGATACAT
EX769061       <-- AGGAGCTCAGGGCATCATAATGGTATATGATGTGACACGACGAGATACAT
EY902161       <-- AGGAGCTCAGGGCATCATAATGGTATATGATGTGACACGACGAGATACAT
FD942653       <-- AGGAGCTCAGGGCATCATAATGGTATATGATGTGACACGACGAGATACAT
EX752470       <-- AGGAGCTCAGGGCATCATAATGGTATATGATGTGACACGACGAGATACAT
FD573958       <-- AGGAGCTCAGGGCATCATAATGGTATATGATGTGACACGACGAGATACAT
EY925907       <-- AGGAGCTCAGGGCATCATAATGGTATATGATGTGACACGACGAGATACAT
EY905598       --> AGGAGCTCAGGGCATCATAATGGTATATGATGTGACACGACGAGATACAT
EY905816       --> ..................................................
FD946548       --> AGGAGCTCAGGGCATCATAATGGTATATGATGTGACACGACGAGATACAT
EX765271       --> AGGAGCTCAGGGCATCATAATGGTATATGATGTGACACGACGAGATACAT
EV565466       --> ..................................................

               401    -    451
UN21473        --> TCACCAATCTATCAGATATATGGGCTAAGGAAATCGACCTGTACTCGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- TCACCAATCTATCAGATATATGGGCTAAGGAAATCGACCTGTACTCGACT
EV570773       <-- TCACCAATCTATCAGATATATGGGCTAAGGAAATCGACCTGTACTCGACT
EV570774       <-- TCACCAATCTATCAGATATATGGGCTAAGGAAATCGACCTGTACTCGACT
EX769061       <-- TCACCAATCTATCAGATATATGGGCTAAGGAAATCGACCTGTACTCGACT
EY902161       <-- TCACCAATCTATCAGATATATGGGCTAAGGAAATCGACCTGTACTCGACT
FD942653       <-- T-ACCAATCTATCAGATATATGGGCTAAGGAAATCGACCTGTACTCGACT
EX752470       <-- TCACCAATCTATCAGATATATGGGCTAAGGAAATCGACCTGTACTCGACT
FD573958       <-- TCACCAATCTATCAGATATATGGGCTAAGGAAATCGACCTGTACTCGACT
EY925907       <-- TCACCAATCTATCAGATATATGGGCTAAGGAAATCGACCTGTACTCGACT
EY905598       --> TCACCAATCTATCAGATATATGGGCTAAGGAAATCGACCTGTACTCGACT
EY905816       --> ..................................................
FD946548       --> T-ACCAATCTATCAGATATATGGGCTAAGGAAATCGACCTGTACTCGACT
EX765271       --> TCACCAATCTATCAGATATATGGGCTAAGGAAATCGACCTGTACTCGACT
EV565466       --> ..................................................

               451    -    501
UN21473        --> AATCAGGATTGCATCAAGATGCTTGTTGGGAATAAAGTCGACAAGGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- AATCAGGATTGCATCAAGATGCTTGTTGGGAATAAAGTCGACAAGGAGAG
EV570773       <-- AATCAGGATTGCATCAAAATGCTTGTTGGGAATAAAGTCGACAAGGAGAG
EV570774       <-- AATCAGGATTGCATCAAAATGCTTGTTGGGAATAAAGTCGACAAGGAGAG
EX769061       <-- AATCAGGATTGCATCAAGATGCTTGTTGGGAATAAAGTCGACAAGGAGAG
EY902161       <-- AATCAGGATTGCATCAAGATGCTTGTTGGGAATAAAGTCGACAAGGAGAG
FD942653       <-- AATCAGGATTGCATCAAGATGCTTGTTGGGAATAAAGTCGACAAGGAGAG
EX752470       <-- AATCAGGATTGCATCAAGATGCTTGTTGGGAATAAAGTCGACAAGGAGAG
FD573958       <-- AATCAGGATTGCATCAGGATGCTTGTTGGGAATAAAGTCGACAAGGAGAG
EY925907       <-- AATCAGGATTGCATCAAGATGCTTGTTGGGAATAAAGTCGACAAGGAGAG
EY905598       --> AATCAGGATTGCATCAAGATGCTTGTTGGGAATAAAGTCGACAAGGAGAG
EY905816       --> ..................................................
FD946548       --> AATCAGGATTGCATCAAGATGCTTGTTGGGAATAAAGTCGACAAGGAGAG
EX765271       --> AATCAGGATTGCATCAAGATGCTTGTTGGGAATAAAGTCGACAAGGAGAG
EV565466       --> ..................................................

               501    -    551
UN21473        --> TGAACGAGCTGTATCTAAGAAAGAAGGCATTGACTTT-GCTCGGGAGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- TGAACGAGCTGTATCTAAAAAAGAAGGCATTGACTTT-GCTCGGGAGTAT  Raphanus raphanistrum subsp. maritimus
EV570773       <-- TGAACGAGCTGTATCTAAAAAAGAAGGCATTGACTTT-GCTCGGGAGTAT  Raphanus raphanistrum subsp. landra
EV570774       <-- TGAACGAGCTGTATCTAAAAAAGAAGGCATTGACTTT-GCTCGGGAGTAT  Raphanus raphanistrum subsp. landra
EX769061       <-- TGAACGAGCTGTATCTAAGAAAGAAGGCATTGACTTT-GCTCGGGAGTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902161       <-- TGAACGAGCTGTATCTAAAAAGGAAGGCATTGACTTT-GCTCGGGAGTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD942653       <-- TGAACGAGCTGTATCTAAGAAAGAAGGCATTGACTTT-GCTCGGGAGTAT  Raphanus sativus cv Early Scarlet Globe
EX752470       <-- TGAACGAGCTGTATCTAAAAAAGAAGGCATTGACTTT-GCTCGGGAGTAT  Raphanus raphanistrum subsp. maritimus
FD573958       <-- TGAACGAGCTGTATTTAAGAAAGAAGGCATTGACTTT-GCTCGGGAGTAT  Raphanus sativus cv Early Scarlet Globe
EY925907       <-- TGAACGAGCTGTATCTAAGAAAGAAGGCATTGACTTT-GCTCGGGAGTAT  Raphanus sativus var. oleiformis
EY905598       --> TGAACGAGCTGCATCTAAAAAGGAAGGCATTGACTTT-GCTCGGGAGTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905816       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946548       --> TGAACGAGCTGTATCTAAGAAAGAAGGCATTGACTTT-GCTCGGGAGTAT  Raphanus sativus cv Early Scarlet Globe
EX765271       --> TGAACGAGCTGTATCTAAGAAAGAAGGCATTGACTTT-GCTCGGGAGTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565466       --> .............................TTGACTTTTGCTCGGGAGTAT  Raphanus raphanistrum subsp. landra

               551    -    601
UN21473        --> GGATGTTT-GTTTTT-GGAGTGCAGTGCAAAGACCC-GAGTCAATGTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- GGATGTTT-GTTTTT-GGAGTGCAGTGCAAAGACCC-GAGTCAATGTTGA
EV570773       <-- GGATGTTT-GTTTTT-GGAGTGCAGTGCAAAGACCC-GAGTCAATGTTGA
EV570774       <-- GGATGTTT-GTTTTT-GGAGTGCAGTGCAAAGACCC-GAGTCAATGTTGA
EX769061       <-- GGATGTTT-GTTTTT-GGAGTGCAGTGCAAAGACCC-GAGTCAATGTTGA
EY902161       <-- GGATGTTT-GTTTTT-GGAGTGCAGTGCAAAGACCC-GAGTCAATGTTGA
FD942653       <-- GGATGTTT-GTTTTT-GGAGTGCAGTGCAAAGACCC-GAGTCAATGTTGA
EX752470       <-- GGATGTTT-GTTTTT-GGAGTGCAGTGCAAAGACCC-GAGTCAATGTTGA
FD573958       <-- GGATGTTT-GTTTTT-GGAGTGCAGTGCAAAGACCC-GAGTCAATGTTGA
EY925907       <-- GGATGTTT-GTTTTT-GGAGTGCAGTGCAAAGACCC-GAGTCAATGTTGA
EY905598       --> GGATGTTT-GTTTTT-GGAGTGCAGTGCAAAGACCC-GAGTCAATGTTGA
EY905816       --> ..................................................
FD946548       --> GGATGTTT-GTTTTT-GGAGTGCAGTGCAAAGACCC-GAGTCAATGTTGA
EX765271       --> GGATGTGT-GTTTTT-GGAGTGCAGTGCAAAGACCC-GAGTCAATGTTGA
EV565466       --> GGATGTTTTGTTTTTTGGAGTGCAGTGCAAAGACCCCGAGTCAATGTTGA

               601    -    651
UN21473        --> GCAATGTTTTGAAGAGCTT-GTTCTTAAGATTTT-GGAAACGCCCAGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- GCAATGTTTTGAAGAGCTT-GTTCTTAAGATTTT-GGAAACGCCGAGTCT  Raphanus raphanistrum subsp. maritimus
EV570773       <-- GCAATGTTTTGAAGAGCTT-GTTCTTAAGATTTT-GGAAACGCCCAGTCT  Raphanus raphanistrum subsp. landra
EV570774       <-- GCAATGTTTTGAAGAGCTT-GTTCTTAAGATTTT-GGAAACGCCCAGTCT  Raphanus raphanistrum subsp. landra
EX769061       <-- GCAATGTTTTGAAGAGCTT-GTTCTTAAGATTTT-GGAAACGCCCAGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902161       <-- GCAATGTTTTGAAGAGCTT-GTTCTTAAGATTTT-GGAAACGCCGAGTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD942653       <-- GCAATGTTTTGAAGAGCTT-GTTCTTAAGATTTT-GGAAACGCCCAGTCT  Raphanus sativus cv Early Scarlet Globe
EX752470       <-- GCAATGTTTTGAAGAGCTT-GTTCTTAAGATTTT-GGAAACGCCGAGTCT  Raphanus raphanistrum subsp. maritimus
FD573958       <-- GCAATGTTTTGAAGAGCTT-GTTCTTAAGATTTT-GGAAACGCCCAGTCT  Raphanus sativus cv Early Scarlet Globe
EY925907       <-- GCAATGTTTTGAATAGCTT-GTTCTTAAGATTTT-GGAAACGCCCAGTCT  Raphanus sativus var. oleiformis
EY905598       --> GCAATGTTTTGAAGAGCTT-GTTCTTAAGATTTT-GGAAACGCCGAGTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905816       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946548       --> GCAATGTTTTGAAGAGCTT-GTTCTTAAGATTTT-GGAAACGCCCAGTCT  Raphanus sativus cv Early Scarlet Globe
EX765271       --> GCAATGTTTTGAAGAGCTT-GTTCTTAAGATTTT-GGAAACGCCCAGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565466       --> GCAATGTTTTGAAGAGCTTTGTTCTTAAGATTTTTGGAAACGCCCAGTCT  Raphanus raphanistrum subsp. landra

               651    -    701
UN21473        --> TACTGCTGAAGGTTCGTCTGGAGGGAAGAAGAACATCTTCAAACAAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- TACTGCTGAAGGTACGTCTGGAGGGAAGAAGAACATCTTCAAACAAAACC  Raphanus raphanistrum subsp. maritimus
EV570773       <-- TACTGCTGAAGGTTCGTCTGGAGGGAAGAAGAACATCTTCAAACAAAACC  Raphanus raphanistrum subsp. landra
EV570774       <-- TACTGCTGAAGGTTCGTCTGGAGGGAAGAAGAACATCTTCAAACAAAACC  Raphanus raphanistrum subsp. landra
EX769061       <-- TACTGCCGAAGGTTCGTCTGGAGGGAAGAAGAACATCTTCAAACAAAACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902161       <-- TACTGCTGAAGGTTCGTCTGGAGGGAAGAAGAACATCTTCAAACAAAACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD942653       <-- TACTGCCGAAGGTTCGTCTGGAGGGAAGAAGAACATCTTCAAACAAAACC  Raphanus sativus cv Early Scarlet Globe
EX752470       <-- TACTGCTGAAGGTTCGTCTGGAGGGAAGAAGAACATCTTCAAACAAAACC  Raphanus raphanistrum subsp. maritimus
FD573958       <-- TACTGCCGAAGGTTCGTCTGGAGGGAAGAAGAACATCTTCAAACAAAACC  Raphanus sativus cv Early Scarlet Globe
EY925907       <-- TACTACCGAAGGTTCGTCTGGAGGGAAGAAGAACATCTTCAAACAAAACC  Raphanus sativus var. oleiformis
EY905598       --> TACTGCTGAAAGTTCGTCTGGAGGGAAGAAGA-CATCTTCAAACAAA-CC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905816       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946548       --> TACTGCCGAAGGTTCGTCTGGAGGGAAG......................  Raphanus sativus cv Early Scarlet Globe
EX765271       --> TACTGCCGAAG-TTCGTCTGGAGGG.........................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565466       --> TACTGCTGAAGGTTCGTCTGGAGGGAAGAAGAACATCTTCAAACAAAACC  Raphanus raphanistrum subsp. landra

               701    -    751
UN21473        --> CAGCACAGACCAGCAATGCTTCATCGAGTTACTGCTGCTCGTCTTAGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- CAGCACAGACCAGCAATGCTTCATCGAGTTACTGCTGCGCGTCTTAGACG  Raphanus raphanistrum subsp. maritimus
EV570773       <-- CAGCACAGACCAGCAATGCTTCATCGAGTTACTGCTGCTCGTCTTAGACA  Raphanus raphanistrum subsp. landra
EV570774       <-- CAGCACAGACCAGCAATGCTTCATCGAGTTACTGCTGCTCGTCTTAGACA  Raphanus raphanistrum subsp. landra
EX769061       <-- CAGCACAGACCAGCAATGCTTCATCGAGTTACTGCTGCTCGTCTTAGACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902161       <-- CAGCACAGACCAGCAATGCTTCATCGAGTTACTGCTGCGCGTCTTAGACG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD942653       <-- CAGCACAGACCAGCAATGCT---TCGAGTTACTGCTGCTCGTCTTAGACA  Raphanus sativus cv Early Scarlet Globe
EX752470       <-- CAGCACAGACCAGCAATGCTTCATCGAGTTACTGCTGCGCGTCTTAGACG  Raphanus raphanistrum subsp. maritimus
FD573958       <-- CAGCACAGACCAGCAATGCTTCATCGAGTTACTGCTGCTCGTCTTAGACA  Raphanus sativus cv Early Scarlet Globe
EY925907       <-- CAGCACAGACCAGCAATGCTTCATCGAGTTACTGCTGCTCGTCTTAGACA  Raphanus sativus var. oleiformis
EY905598       --> CAGCACAGACCAGCA-TGCTTCATCGAGT-ACTGCTGCGCGTCTagacgt  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905816       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946548       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX765271       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565466       --> CAGCACAGACCAGCAATGCTTCATCGAGTTACTGCTGCTCGTCTTAGACA  Raphanus raphanistrum subsp. landra

               751    -    801
UN21473        --> CGGCTTTACGGTTTATGACACAAACTCCACTCTTGTTTGTCTTCTTGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- TGGCTTTACGGTTTATGACACAACATCCACTCTTGTTTGTCTTCTTGCCC
EV570773       <-- CGGCTTTACGGTTTATGACACAAACTCCACTCTTGTTTGTCTTCTTGCTC
EV570774       <-- CGGCTTTACGGTTTATGACACAAACTCCACTCTTGTTTGTCTTCTTGCTC
EX769061       <-- CGGCTTTACGGTTTATGACACAAACTCCACTCTTGTTTGTCTTCTTGCTC
EY902161       <-- TGGCTTTACGGTTTATGACACAACATCCACTCTTGTTTGTCTTCTTGCTC
FD942653       <-- CGGCTTTACGGTTTATGACACAAACTCCACTCTTGTTTGTCTTCTTGCTC
EX752470       <-- TGGCTTTACGGTTTATGACACAACATCCACTCTTGTTTGTCTTCTTGCTC
FD573958       <-- CGGCTTTACGGTTTATGACACAAACTCCACTCTTGTTTGTCTTCTTGCTC
EY925907       <-- CGGCTTTACGGTTTATGACACAAACTCCACTCTTGTTTGTCTTCTTGCTC
EY905598       --> gg................................................
EY905816       --> ..................................................
FD946548       --> ..................................................
EX765271       --> ..................................................
EV565466       --> CGGCTTTACGGTTTATGACACAAACTCCACTCTTGTTTGTCTTCTTGCTC

               801    -    851
UN21473        --> TTGATTGTCTGTCTCTCTGTTTCCCAGAAAAACTGCAGCATCTTGGATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- TTGATTGTCTA----TCTGTTTCCCAGAAAAACTGCAGCATCTTGGATGT
EV570773       <-- TTGATTGTCTGTCTCTCTGTTTCCCAGAAAAACTGCAGCATCTTGGATGT
EV570774       <-- TTGATTGTCTGTCTCTCTGTTTCCCAGAAAAACTGCAGCATCTTGGATGT
EX769061       <-- TTGATTGTCTGTCTCTCTGTTTCCCAGAAAAACTGCAGCATCTTGGATGT
EY902161       <-- TTGATTGTCTA----TCTGTTTCCCAGAAAAACTGCAGCATCTTGGATGT
FD942653       <-- TTGATTGTCTGTCTCTCTGTTTCCCAGGAAAACTGCAGCATCTTGGATGT
EX752470       <-- TTGATTGTCTA----TCTGTTTCCCAGAAAAACTGCAGCATCTTGGATGT
FD573958       <-- TTGATTGTCTGTCTCTCTGTTTCCCAGAAAAACTGCAGCATCTTGGATGT
EY925907       <-- TTGATTGTCTGTCTCTCTGTTTCCCAGAAAAACTGCAGCATCTTGGATGT
EY905598       --> ..................................................
EY905816       --> ..................................................
FD946548       --> ..................................................
EX765271       --> ..................................................
EV565466       --> TTGATTGTCTGTCTCTCTGTTTCCCAGAAAAACTGCAGCATCTTGGATGT

               851    -    901
UN21473        --> AAATCTTAACCCTACTTTCAGAGTTGTGTTCACTGGTTTTCTAATTTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- AAATCTTAACCCTACTTTCAAAGTTGTGTTCACTGGTTTTCTTATTTGAG
EV570773       <-- AAATCTTAACCCTACTTTCAGAGTTGTGTTCACTGGTTTTCTAATTTGAG
EV570774       <-- AAATCTTAACCCTACTTTCAGAGTTGTGTTCACTGGTTTTCTAATTTGAG
EX769061       <-- AAATCTTAACCCTACTTTCAGAGTTGTGTTCACTGGTTTTCTAATTTGAG
EY902161       <-- AAATCTTAACCCTACTTTCAAAGTTGTGTTCACTGGTTTTCTt.......
FD942653       <-- AAATCTTAACCCTACTTTCAGAGc..........................
EX752470       <-- AAATCTTAACCCTACTTTCAAAGTTGTGTCCACTGGTTTTCTTATTTGAG
FD573958       <-- AAATCTTAACCCTACTTTCAGAGTTGTGTTCACTGGTTTTCTAATTTGAG
EY925907       <-- AAATCTTAACCCTACTTTCAGAGTTGTGTTCACTGGTTTTCTAAT.....
EY905598       --> ..................................................
EY905816       --> ..................................................
FD946548       --> ..................................................
EX765271       --> ..................................................
EV565466       --> AAATCTTAACCCTACTTTCAGAGTTGTGTTCACTGGTTTTCTAATTTGAG

               901    -    951
UN21473        --> ATCATCCCATCTTATTCAGAAAAAGAAATTTAATACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960981       <-- ATCATCCCATCTTATTCAGc..................
EV570773       <-- ATCATCCCATCTTATTCAG...................
EV570774       <-- ATCATCCCATCTTATTCAG...................
EX769061       <-- ATCATCCCATCTT.........................
EY902161       <-- ......................................
FD942653       <-- ......................................
EX752470       <-- ATCATCCCATCTTATTC.....................
FD573958       <-- ATCATCCCATCTTATTCAGAAAAAGAAATTTAATACGC
EY925907       <-- ......................................
EY905598       --> ......................................
EY905816       --> ......................................
FD946548       --> ......................................
EX765271       --> ......................................
EV565466       --> ATCATCCCATCTTATTCAG...................