1      -     51
UN21476        --> GGGGTTTTCCTGGGTAACAGACGCCATGGGTATCGATCTTATCGCCGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759064       <-- ...........GGGTAACAGACGCCATGGGTATCGATCTTATCGCCGGAG
EX760900       <-- .............ggAACAGACGCCATGGGTATCGATCTTATCGCCGGAG
FD539172       <-- ...............AACAGACGCCATGGGTATCGATCTTATCGCCGGAG
FD555369       <-- ..................................................
FD982788       <-- ..................................................
EY901388       <-- ..................................................
EV540958       <-- ..................................................
FD543307       --> GGGGTTTTCCTCCGTAACAGACGCCATGGGTATCGATCTTATCGCCGGAG
FD986552       --> ggaGTTTTCCTCCGTAACAGACGCCATGGGTATCGATCTTATCGCCGGAG
EV536533       --> ...........GGGTAACAGACGCCATGGGTATCGATCTTATCGCCGGAG
EX754339       --> ...........GGGTAACAGACGCCATGGGTATCGATCTTATCGCCGGAG
EX754829       --> ...........GGGTAACAGACGCCATGGGTATCGATCTTATCGCCGGAG
EY904803       --> ...........GGGTAACAGACGCCATGGGTATCGATCTTATCGCCGGAG
EX757276       --> .............ggAACAGACGCCATGGGTATCGATCTTATCGCCGGAG
EY921379       --> ..................................................
FD559709       --> ..................................................

               51     -    101
UN21476        --> GTAAGAGCAAGAAGACCAAAAGGACAGCTCCAAAGTCCGATGATGTCTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759064       <-- GTAAGAGCAAGAAGACCAAAAGGACAGCTCCAAAGTCCGATGATGTCTAC
EX760900       <-- GTAAGAGCAAGAAGACCAAAAGGACAGCTCCAAAGTCCGATGATGTCTAC
FD539172       <-- GTAAGAGCAAGAAGACCAAAAGGACAGCTCCAAAGTCCGATGATGTCTAC
FD555369       <-- ................................gAGTCCGATGATGTCTAC
FD982788       <-- ..................................................
EY901388       <-- ..................................................
EV540958       <-- ..................................................
FD543307       --> GTAAGAGCAAGAAGACCAAAAGGACAGCTCCAAAGTCCGATGATGTCTAC
FD986552       --> GTAAGAGCAAGAAGACCAAAAGGACAGCTCCAAAGTCCGATGATGTCTAC
EV536533       --> GTAAGAGCAAGAAGACCAAAAGGACAGCTCCAAAGTCCGATGATGTCTAC
EX754339       --> GTAAGAGCAAGAAGACCAAAAGGACAGCTCCAAAGTCCGATGATGTCCAC
EX754829       --> GTAAGAGCAAGAAGACCAAAAGGACAGCTCCAAAGTCCGATGATGTCTAC
EY904803       --> GTAAGAGCAAGAAGACCAAAAGGACAGCTCCAAAGTCCGATGATGTCTAC
EX757276       --> GTAAGAGCAAGAAGACCAAAAGGACAGCTCCAAAGTCCGATGATGTCTAC
EY921379       --> ..........................GCTCCAAAGTCCGATGATGTCTAC
FD559709       --> ................................gAGTCCGATGATGTCTAC

               101    -    151
UN21476        --> CTCAAGCTTCTCGTCAAGCTGTACCGGTTTTTGGTAAGGAGAACCGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759064       <-- CTCAAGCTTCTCGTCAAGCTGTACCGGTTTTTGGTAAGGAGAACCGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760900       <-- CTCAAGCTTCTCGTCAAGCTGTACCGGTTTTTGGTAAGGAGAACCGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539172       <-- CTCAAGCTTCTCGTCAAGCTGTACCGGTTTTTGGTAAGGAGAACCGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555369       <-- CTCAAGCTTCTCGTTAAGCTGTACCGGTTTTTGGTAAGGAGAACCGGAAG  Raphanus raphanistrum subsp. landra
FD982788       <-- ...........................................CCGGAAG  Raphanus raphanistrum subsp. landra
EY901388       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540958       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543307       --> CTCAAGCTTCTCGTCAAGCTGTACCGGTTTTTGGTAAGGAGAACCGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD986552       --> CTCAAGCTTCTCGTTAAGCTGTACCGGTTTTTGGTAAGGAGAACCGGAAG  Raphanus raphanistrum subsp. landra
EV536533       --> CTCAAGCTTCTCGTCAAGCTGTACCGGTTTTTGGTAAGGAGAACCGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754339       --> CTCAAGCTTCTCGTCAAGCTGTACCGGTTTTTGGTAAGGAGAACCGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754829       --> CTCAAGCTTCTCGTCAAGCTGTACCGGTTTTTGGTAAGGAGAACCGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904803       --> CTCAAGCTTCTCGTCAAGCTGTACCGGTTTTTGGTAAGGAGAACCGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757276       --> CTCAAGCTTCTCGTCAAGCTGTACCGGTTTTTGGTAAGGAGAACCGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921379       --> CTCAAGCTTCTCGTTAAGCTGTACCGGTTTTTGGTAAGGAGAACCGGAAG  Raphanus raphanistrum subsp. landra
FD559709       --> CTCAAGCTTCTCGTTAAGCTGTACCGGTTTTTGGTAAGGAGAACCGGAAG  Raphanus raphanistrum subsp. landra

               151    -    201
UN21476        --> CAAGTTCGATGCTGTGATCCTCAAGAGGCTTTTCATGAGCAAAGTCAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759064       <-- CAAGTTCGATGCTGTGATCCCCAAGAGGCTTTTCATGAGCAAAGTCAACA
EX760900       <-- CAAGTTCGATGCTGTGATCCTTAAGAGGCTTTTCATGAGTAAAGTCAACA
FD539172       <-- CAAGTTCGATGCTGTGATCCTCAAGAGGCTTTTCATGAGCAAAGTCAACA
FD555369       <-- CAAGTTCGATGCTGTGATCCTCAAGAGGCTTTTCATGAGCAAAGTCAACA
FD982788       <-- CAAGTTCGATGCTGTGATCCTCAAGAGGCTTTTCATGAGCAAAGTCAACA
EY901388       <-- ..................................................
EV540958       <-- ..................................................
FD543307       --> CAAGTTCGATGCTGTGATCCTCAAGAGGCTTTTCATGAGCAAAGTCAACA
FD986552       --> CAAGTTCGATGCTGTGATCCTCAAGAGGCTTTTCATGAGCAAAGTCAACA
EV536533       --> CAAGTTCGATGCTGTGATCCTCAAGAGGCTTTTCATGAGCAAAGTCAACA
EX754339       --> CAAGTTCGATGCTGTGATCCTCAAGAGGCTTTTCATGAGCAAAGTCAACA
EX754829       --> CAAGTTCGATGCTGTGATCCCCAAGAGGCTTTTCATGAGCAAAGTCAACA
EY904803       --> CAAGTTCGATGCTGTGATCCTCAAGAGGCTTTTCATGAGCAAAGTCAACA
EX757276       --> CAAGTTCGATGCTGTGATCCTTAAGAGGCTTTTCATGAGTAAAGTCAACA
EY921379       --> CAAGTTCGATGCTGTGATCCTCAAGAGGCTTTTCATGAGCAAAGTCAACA
FD559709       --> CAAGTTCGATGCTGTGATCCTCAAGAGGCTTTTCATGAGCAAAGTCAACA

               201    -    251
UN21476        --> AGGCTCCTCTTTCGCTCTCCAAGCTCGTTGAGTTTATGAATGGCAAGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759064       <-- AGGCTCCTCTTTCGCTCTCCAAGCTCGTTGAGTTTATGAATGGCAAGGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760900       <-- AGGCTCCTCTTTCGCTCTCCAAGCTCGTTGAGTTTATGAATGGCAAGGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539172       <-- AGGCTCCTCTTTCGCTCTCCAAGCTCGTTGAGTTTATGAATGGCAAGGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555369       <-- AGGCTCCTCTTTCACTCTCCAAGCTCGTTGAGTTCATGAACGGCAAGGAT  Raphanus raphanistrum subsp. landra
FD982788       <-- AGGCTCCTCTTTCACTCTCCAAGCTCGTTGAGTTCATGAACGGCAAGGAT  Raphanus raphanistrum subsp. landra
EY901388       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540958       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543307       --> AGGCTCCTCTTTCGCTCTCCAAGCTCGTTGAGTTTATGAATGGCAAGGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD986552       --> AGGCTCCTCTTTCACTCTCCAAGCTCGTTGAGTTCATGAACGGCAAGGAT  Raphanus raphanistrum subsp. landra
EV536533       --> AGGCTCCTCTTTCGCTCTCCAAGCTCGTTGAGTTTATGAATGGCAAGGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754339       --> AGGCTCCTCTTTCGCTCTCCAAGCTCGTTGAGTTTATGAATGGCAAGGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754829       --> AGGCTCCTCTTTCGCTCTCCAAGCTCGTTGAGTTTATGAATGGCAAGGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904803       --> AGGCTCCTCCTTCGCTCTCCAAGCTCGTTGAGTTTGTGAATGGCAAGGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757276       --> AGGCTCCTCTTTCGCTCTCCAAGCTCGTTGAGTTTATGAATGGCAAGGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921379       --> AGGCTCCTCTTTCACTCTCCAAGCTCGTTGAGTTCATGAACGGCAAGGAT  Raphanus raphanistrum subsp. landra
FD559709       --> AGGCTCCTCTTTCACTCTCCAAGCTCGTTGAGTTCATGAACGGCAAGGAT  Raphanus raphanistrum subsp. landra

               251    -    301
UN21476        --> GGTAAGATTGCTGTGTTGGTTGGGACAATCACTGATGATCTGAGAGTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759064       <-- GGTAAGATTGCTGTGTTGGTTGGGACAATCACTGATGATTTGAGAGTGCA
EX760900       <-- GGTAAGATTGCTGTGTTGGTTGGGACAATCACTGATGATCTGAGAGTGCA
FD539172       <-- GGTAAGATTGCTGTGTTGGTTGGGACAATCACTGATGATCTGAGAGTGCA
FD555369       <-- GGTAAGATTGCTGTGTTGGTTGGGACAATCACTGATGATCTGAGAGTGCA
FD982788       <-- GGTAAGATTGCTGTGTTGGTTGGGACAATCACTGATGATCTGAGAGTGCA
EY901388       <-- ..................................................
EV540958       <-- ..................................................
FD543307       --> GGTAAGATTGCTGTGTTGGTTGGGACAATCACTGATGATCTGAGAGTGCA
FD986552       --> GGTAAGATTGCTGTGTTGGTTGGGACAATCACTGATGATCTGAGAGTGCA
EV536533       --> GGTAAGATTGCTGTGTTGGTTGGGACAATCACTGATGATCTGAGAGTGCA
EX754339       --> GGTAAGATTGCTGTGTTGGTTGGGACAATCACTGATGATCTGAGAGTGCA
EX754829       --> GGTAAGATTGCTGTGTTGGTTGGGACAATCACTGATGATCTGAGAGTGCA
EY904803       --> GGTAAGATTGCTGTGTTGGTTGGGACAATCACTGATGATCTGAGAGTGCA
EX757276       --> GGTAAGATTGCTGTGTTGGTTGGGACAATCACTGATGATCTGAGAGTGCA
EY921379       --> GGTAAGATTGCTGTGTTGGTTGGGACAATCACTGATGATCTGAGAGTGCA
FD559709       --> GGTAAGATTGCTGTGTTGGTTGGGACAATCACTGATGATCTGAGAGTGCA

               301    -    351
UN21476        --> TGAGATTCCTGCAATGAAGGTTACTGCCTTGAGGTTTACGGAGAGAGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759064       <-- TGAGATTCCTGCAATGAAGGTTACTGCCTTGAGGTTTACGGAGAGAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760900       <-- TGAGATTCCTGCAATGAAGGTTACTGCCTTGAGGTTTACGGAGAGAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539172       <-- TGAGATTCCTGCAATGAAGGTTACTGCCTTGAGGTTTACGGAGAGAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555369       <-- TGAGATTCCTCCAATGAAGGTTACTGCCTTGAGGTTTACGGAGAGAGCTA  Raphanus raphanistrum subsp. landra
FD982788       <-- TGAGATTCCTCCAATGAAGGTTACTGCCTTGAGGTTTACGGAGAGAGCTA  Raphanus raphanistrum subsp. landra
EY901388       <-- ..........GCAATGAAGGTTACTGCCTTGAGGTTTACGGAGAGAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540958       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543307       --> TGAGATTCCTGCAATGAAGGTTACTGCCTTGAGGTTTACGGAGAGAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD986552       --> TGAGATTCCTCCAATGAAGGTTACTGCCTTGAGGTTTACGGAGAGAGCTA  Raphanus raphanistrum subsp. landra
EV536533       --> TGAGATTCCTGCAATGAAGGTTACTGCCTTGAGGTTTACGGAGAGAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754339       --> TGAGATTCCTGCAA--AAGGTTACTGCCTTGAGGTTTACGGAGAGAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754829       --> TGAGATTCCTGCAATGAAGGTTACTGCCTTGAGGTTTACGGAGAGAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904803       --> TGAGATTCCTGCAATGAAGGTTACTGCCTTGAGGTTTACGGAGAGAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757276       --> TGAGATTCCTGCAATGAAGGTTACTGCCTTGAGGTTTACGGAGAGAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921379       --> TGAGATTCCTCCAATGAAGGTTACTGCCTTGAGGTTTACGGAGAGAGCTA  Raphanus raphanistrum subsp. landra
FD559709       --> TGAGATTCCTCCAATGAAGGTTACTGCCTTGAGGTTTACGGAGAGAGCTA  Raphanus raphanistrum subsp. landra

               351    -    401
UN21476        --> GGGCTAGGATTGAGAAAGCTGGTGGGGAGTGCTTGACCTTTGACCAGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759064       <-- GGGCTAGGATTGAGAAAGCTGGTGGGGAGTGCTTGACCTTTGACCAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760900       <-- GGGCTAGGATTGAGAAAGCTGGTGGGGAGTGCTTGACCTTTGACCAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539172       <-- GGGCTAGGATTGAGAAAGCTGGTGGGGAGTGCTTGACCTTTGACCAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555369       <-- GGGCTAGGATTGAGAAAGCTGGTGGAGAGTGCTTGACCTTTGACCAGCTT  Raphanus raphanistrum subsp. landra
FD982788       <-- GGGCTAGGATTGAGAAAGCTGGTGGAGAGTGCTTGACCTTTGACCAGCTT  Raphanus raphanistrum subsp. landra
EY901388       <-- GGGCTAGGATTGAGAAAGCTGGTGGGGAGTGCTTGACCTTTGACCAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540958       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543307       --> GGGCTAGGATTGAGAAAGCTGGTGGGGAGTGCTTGACCTTTGACCAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD986552       --> GGGCTAGGATTGAGAAAGCTGGTGGAGAGTGCTTGACCTTTGACCAGCTT  Raphanus raphanistrum subsp. landra
EV536533       --> GGGCTAGGATTGAGAAAGCTGGTGGGGAGTGCTTGACCTTTGACCAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754339       --> GGGCTAGGATTGAGAAAGCTGGTGGGGAGTGCTTGACCTTTGACCAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754829       --> GGGCTAGGATTGAGAAAGCTGGTGGGGAGTGCTTGACCTTTGACCAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904803       --> GGGCTAGGATTGAGAAAGCTGGTGGGGAGTGCTTGACCTTTGACCAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757276       --> GGGCTAGGATTGAGAAAGCTGGTGGGGAGTGCTTGACCTTTGACCAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921379       --> GGGCTAGGATTGAGAAAGCTGGTGGAGAGTGCTTGACCTTTGACCAGCTT  Raphanus raphanistrum subsp. landra
FD559709       --> GGGCTAGGATTGAGAAAGCTGGTGGAGAGTGCTTGACCTTTGACCAGCTT  Raphanus raphanistrum subsp. landra

               401    -    451
UN21476        --> GCTCTCGTTGCTCCATTGGGACAGAATACGGTTCTGCTAAGAGGACCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759064       <-- GCTCTCGTTGCTCCATTGGGACAGAATACGGTTCTGCTAAGAGGACCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760900       <-- GCTCTCGTTGCTCCATTGGGACAGAATACGGTTCTGCTAAGAGGACCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539172       <-- GCTCTCGTTGCTCCATTGGGACAGAATACGGTTCTGCTAAGAGGACCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555369       <-- GCTCTCGTTGCTCCATTGGGACAGAACACGGTTCTCCTAAGAGGATCCAA  Raphanus raphanistrum subsp. landra
FD982788       <-- GCTCTCGTTGCTCCATTGGGACAGAACACGGTTCTCCTAAGAGGACCCAA  Raphanus raphanistrum subsp. landra
EY901388       <-- GCTCTCGTTGCTCCATTGGGACAGAATACGGTTCTGCTAAGAGGACCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540958       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543307       --> GCTCTCGTTGCTCCATTGGGACAGAATACGGTTCTGCTAAGAGGACCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD986552       --> GCTCTCGTTGCTCCATTGGGACAGAACACGGTTCTCCTAAGAGGACCCAA  Raphanus raphanistrum subsp. landra
EV536533       --> GCTCTCGTTGCTCCATTGGGACAGAATACGGTTCTGCTAAGAGGACCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754339       --> GCTCTCGTTGCTCCATTGGGACAGAATACGGTTCTGCTAAGAGGACCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754829       --> GCTCTCGTTGCTCCATTGGGACAGAATACGGTTCTGCTAAGAGGACCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904803       --> GCTCTCGTTGCTCCATTGGGACAGAATACGGTTCTGCTAAGAGGACCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757276       --> GCTCTCGTTGCTCCATTGGGACAGAATACGGTTCTGCTAAGAGGACCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921379       --> GCTCTCGTTGCTCCATTGGGACAGAACACGGTTCTCCTAAGAGGACCCAA  Raphanus raphanistrum subsp. landra
FD559709       --> GCTCTCGTTGCTCCATTGGGACAGAACACGGTTCTCCTAAGAGGATCCAA  Raphanus raphanistrum subsp. landra

               451    -    501
UN21476        --> GAACTCTCGTGAGGCAGTGAAGCACTTTGGTCCAGCTCCTGGTGTGCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759064       <-- GAACTCTCGTGAGGCAGTGTAGCACCTTGGTCCAGCTCCTGGTGTGCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760900       <-- GAACTCTCGTGAGGCAGTGAAGCACTTTGGTCCAGCTCCTGGTGTGCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539172       <-- GAACTCTCGTGAGGCAGTGAAGCACTTTGGTCCAGCTCCTGGTGTGCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555369       <-- GAACTCTCGTGAGGCAGTGAAGCACTTTGGTCCTGCACCTGGTGTGCCAC  Raphanus raphanistrum subsp. landra
FD982788       <-- GAACTCTCGTGAGGCAGTGAAGCACTTTGGTCCTGCACCTGGTGTGCCAC  Raphanus raphanistrum subsp. landra
EY901388       <-- GAACTCTCGTGAGGCAGTGAAGCACTTTGGTCCAGCTCCTGGTGTGCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540958       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543307       --> GAACTCTCGTGAGGCAGTGAAGCACTTTGGTCCAGCTCCTGGTGTGCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD986552       --> GAACTCTCGTGAGGCAGTGAAGCACTTTGGTCCTGCACCTGGTGTGCCAC  Raphanus raphanistrum subsp. landra
EV536533       --> GAACTCTCGTGAGGCAGTGAAGCACTTTGGTCCAGCTCCTGGTGTGCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754339       --> GAACTCTCGTGGGGCAGTGAAGCACTTTGGTCCAGCTCCTGGTGTGCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754829       --> GAACTCTCGTGAGGCAGTGTAGCACCTTGGTCCAGCTCCTGGTGTGCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904803       --> GAACTCTCGTGAGGCAGTGAAGCACTTTGGTCCAGCTCCTGGTGTGCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757276       --> GAACTCTCGTGAGGCAGTGAAGCACTTTGGTCCAGCTCCTGGTGTGCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921379       --> GAACTCTCGTGAGGCAGTGAAGCACTTTGGTCCTGCACCTGGTGTGCCAC  Raphanus raphanistrum subsp. landra
FD559709       --> GAACTCTCGTGAGGCAGTGAAGCACTTTGGTCCTGCACCTGGTGTGCCAC  Raphanus raphanistrum subsp. landra

               501    -    551
UN21476        --> ACAGCCACTCCAAGCCTTATGTTAGGTCTAAGGGAAGGAAGTTTGAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759064       <-- ACAGCCACTCCAAGCCTTATGTTAGGTTTAAGGGAAGGAAGTTTGAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760900       <-- ACAGCCACTCCAAGCCTTATGTTAGGTCTAAGGGAAGGAAGTTTGAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539172       <-- ACAGCCACTCCAAGCCTTATGTTAGGTTTAAGGGAAGGAAGTTTGAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555369       <-- ACAGCCACTCCAAGCCTTATGTTAGGTCTAAGGGAAGGAAGTTTGAGAAA  Raphanus raphanistrum subsp. landra
FD982788       <-- ACAGCCACTCCAAGCCTTATGTTAGGTCTAAGGGAAGGAAGTTTGAGAAA  Raphanus raphanistrum subsp. landra
EY901388       <-- ACAGCCACTCCAAGCCTTATGTTAGGTTTAAGGGAAGGAAGTTTGAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540958       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543307       --> ACAGCCACTCCAAGCCTTATGTTAGGTCTAAGGGAAGGAAGTTTGAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD986552       --> ACAGCCACTCCAAGCCTTATGTTAGGTCTAAGGGAAGGAAGTTTGAGAAA  Raphanus raphanistrum subsp. landra
EV536533       --> ACAGCCACTCCAAGCCTTATGTTAAGTCTAAGGGTAGGAAGTTTGAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754339       --> ACAGCCACTCCAAGCCTTATGTTAGGTCTAAGGGAAGGAAGTTTGAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754829       --> ACAGCCACTCCAAGCCTTATGTTAGGTCTAAGGGAAGGAAGTTTGAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904803       --> ACAGCCACTCCAAGCCTTATGTTAGGTCTAAGGGAAGGAAGTTTGAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757276       --> ACAGCCACTCCAAGCCTTATGTTAGGTCTAAGGGAAGGAAGTTTGAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921379       --> ACAGCCACTCCAAGCCTTATGTTAGGTCTAAGGGAAGGAAGTTTGAGAAA  Raphanus raphanistrum subsp. landra
FD559709       --> ACAGCCACTCCAAGCCTTATGTTAGGTCTAAGGGAAGGAAGTTTGAGAAA  Raphanus raphanistrum subsp. landra

               551    -    601
UN21476        --> GCTAGAGGAAAGCGAAAGAGTCGTGGATTCAAGGTCTAAGAAAGTCCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759064       <-- GCTAGAGGAAAGCGAAAGAGTCGTGGATTCAAGGTCTAAGAAAGTCCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760900       <-- GCTAGAGGAAAGCGAAAGAGTCGTGGATTCAAGGTCTAAGAAAGTCCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539172       <-- GCTAGAGGAAAGCGAAAGAGTCGTGGATTCAAGGTTTAAGAAAGTCCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555369       <-- GCTAGAGGAAAGTGAAAGAGTCGTGGTTTCAAGGTCTAAGAAAGTCCTCA  Raphanus raphanistrum subsp. landra
FD982788       <-- GCTAGAGGAAAGCGAAAGAGTCGTGGTTTCAAGGTCTAAGAAAGTCCTCA  Raphanus raphanistrum subsp. landra
EY901388       <-- GCTAGAGGAAAGCGAAAGAGTCGTGGATTCAAGGTTTAAGAAAGTCCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540958       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543307       --> GCTAGAGGAAAGCGAAAGAGTCGTGGATTCAAGGTCTAAGAAAGTCCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD986552       --> GCTAGAGGAAAGCGAAAGAGTCGTGGTTTCAAGGTCTAAGAAAGTCCTCA  Raphanus raphanistrum subsp. landra
EV536533       --> GCTAGAGGAAAGCGAAAGAGTCGTGGATTCAAGGTCTAAGAAAGTCCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754339       --> GCTAGAGGAAAGCGAAAGAGTCGTGGATTCAAGGTCTAAGAAAGTCCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754829       --> GCTAGAGGAAAGCGAAAGAGTCGTGGATTCAAGGTCTAAGAAAGTCCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904803       --> GCTAGAGGAAAGCGAAAGAGTCGTGGAT......................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757276       --> GCTAGAGGAAAGCGAAAGAGTCGTGGATTCAAGGTCTAAGAAAGTCCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921379       --> GCTAGAGGAAAGCGAAAGAGTCGTGGTTTCAAGGTCTAAGAAAGTCCTCA  Raphanus raphanistrum subsp. landra
FD559709       --> GCTAGAGGAAAGTGAAAGAGTCGTGGTTTCAAGGTCTAAGAAAGTCCTCA  Raphanus raphanistrum subsp. landra

               601    -    651
UN21476        --> AAACTGTTTCGAGGTTCTTGTTTCCTTATGATTGTTGCTGTTTTCAGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759064       <-- AAACTGTTTCGAGGTTCTTGTTTCCTTATGATTGTTGCTGTTTTCAGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760900       <-- AAACTGTTTCGAGGTTCTTGTTTCCTTATGATTGTTGCTGTTTTCAGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539172       <-- AAACTGTTTCGAGGTTCTTGTTTCCTTATGATTGTTGCTGTTTTCAGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555369       <-- AAACTGTTTCGAGCTTCTTGTTTCCTTATGGTTGTTGCTGCTTTCAGAAT  Raphanus raphanistrum subsp. landra
FD982788       <-- AAACTGTTTCGAGCTTCTTGTTTCCTTATGGTTGTTGCTGCTTTCAGAAT  Raphanus raphanistrum subsp. landra
EY901388       <-- AAACTGTTTCGAGGTTCTTGTTTCCTTATGATTGTTGCTGTTTTCAGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540958       <-- ......TTTGGAGGTTCTTGTTTCCTTATGATCGTTGCTGTTTTCAGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543307       --> AAACTGTTTCGAGGTTCTTGTTTCCTTATGATTGTTGCTGTTTTCAGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD986552       --> AAACTGTTTCGAGCTTCTTGTTTCCTTATGGTTGTTGCTGCTTTCAGAAT  Raphanus raphanistrum subsp. landra
EV536533       --> AAACTGTTTCGAGGTTCTTGTTTCCTTATGATCGTTGCTGTTTTCAGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754339       --> AAACTGTTTCGAGGTTCTTGTTTCCTTATGATTGTTGCTGTTTTCAGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754829       --> AAACTGTTTCGAGGTTCTTGTTTCCTTATGATTGTTGCTG..........  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904803       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757276       --> AAACTGTTTCGAGGTTCTTGTTTCCTTATGATTGTTGCTGTTTTCAGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921379       --> AAACTGTTTCGAGCTTCCTGTTTCCTTATGGTTGTTGCTGCTTTCAGAAT  Raphanus raphanistrum subsp. landra
FD559709       --> AAACTGTTTCGAGCTTCTTGTTTCCTTATGGTTGTTGCTGCTTTCAGAAT  Raphanus raphanistrum subsp. landra

               651    -    701
UN21476        --> CGAAGTTTTTGTAGACCGCTTTTGTTACTTTTTGCCTTTTGCAGACATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759064       <-- CGAAGTTTTTGTAGACCGCTTTTGTTACTTTTTGCCTTTTGCAGACATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760900       <-- CGAAGTTTTTGTAGACCGCTTTTGTTACTTTTTGCCTCTTGCAGACATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539172       <-- CGAAGTTTTTGTAGACCGCTTTTGTTACTTTTTGCCTTTTGCAGACATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555369       <-- CCAAGTTTTTGTAGACCGCTTTTGTTACTTTTTGCCTTTTGCAGACATTG  Raphanus raphanistrum subsp. landra
FD982788       <-- CCAAGTTTTTGTAGACCGCTTTTGTTACTTTTTGCCTTTTGCAGACATTG  Raphanus raphanistrum subsp. landra
EY901388       <-- CGAAGTTTTTGTAGACCGCTTTTGTTACTTTTTGCCTTTTGCAGACATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540958       <-- GGAAGTTTTTGTAGACCGCTTTTGTTACTTTTTGCCTTTTGCAGACATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543307       --> CGAAGTTTTTGTAGACCGCTTTTGTTACTTTTTGCCTTTTGCAGACATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD986552       --> CCAAGTTTTTGTAGACCGCTTTTGTTACTTTTTGCCTTTTGCAGACATTG  Raphanus raphanistrum subsp. landra
EV536533       --> CGAAGTTTTTGTAGACCGCTTTTGTTACTTTTTGCCTTTTGCAGACATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754339       --> CGAAGTTTTgtag.....................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754829       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904803       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757276       --> CGAAGTTTTTGTAGACCGCTTTTGTTACTTTTTGCCTCTTGCAGACATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921379       --> CCAAGTTTTTGTAGACCGCTTTTGTTACTTTTTGCCTTTTGCAGACATTG  Raphanus raphanistrum subsp. landra
FD559709       --> CCAAGTTTTTGTAGACCGCTTTTGTTACTTTTTGCCTTTTGCAGACATTG  Raphanus raphanistrum subsp. landra

               701    -    751
UN21476        --> GTTTGAGTTTTCCGTGTTTCTGTTCTAATCGACAATTGAATGTTTTGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759064       <-- GTTTGAGTTTTCCGTG..................................
EX760900       <-- GTTTGAGTTTTCCGTGTTTCTGTTCTAATCGACAATTGAATGTTTTGCTT
FD539172       <-- GTTTGAGTTTTCCGTGTTTCTGTTCTAATCGACAATTGAATGTTTTGCTT
FD555369       <-- GTTTGAGTTTTCCGTGTTTCTGTTCTAATCGACAATTGAA..........
FD982788       <-- GTTTGAGTTTTCCGTGTTTCTGTTCTAATCGACAATTGAA..........
EY901388       <-- GTTTGAGTTTTCCGTGTTTCTGTTCTAATCGACAATTGAATGTTTTGCTT
EV540958       <-- GTTTGAGTTTTCCGTGT.................................
FD543307       --> GTTTGAGTTTTCCGTGTTTCTGTTCTA-TCGACA-TTGAATGTTT-GCTT
FD986552       --> GTTTGAGTTTTCCGTGTTTCTGTTCTAATCGACAATTGAA..........
EV536533       --> GTTTGAGTTTTCCGTGTTTCTGTTCTAATCGACA................
EX754339       --> ..................................................
EX754829       --> ..................................................
EY904803       --> ..................................................
EX757276       --> GTTTGAGTTTTCCGTGTTTCTGTTCTAATCGACA-TTGAATGTTTTGCTT
EY921379       --> GTTTGAGTTTTCCGTGTTTCTGTTCTAATCGACAATTGAATGTTTTGCTT
FD559709       --> GTTTGAGTTTTCCGTGTTTCTGTTCTAATCGACAATTGAA..........

               751    -    801
UN21476        --> CCGCCAATATTCTTGAT
                   ~~~~~~~~~~~~~~~~~
EX759064       <-- .................
EX760900       <-- CCGCCAATATTCTTG..
FD539172       <-- CC...............
FD555369       <-- .................
FD982788       <-- .................
EY901388       <-- CC...............
EV540958       <-- .................
FD543307       --> C................
FD986552       --> .................
EV536533       --> .................
EX754339       --> .................
EX754829       --> .................
EY904803       --> .................
EX757276       --> CCGCCAATATTCTTGAT
EY921379       --> CCGCCAATATTCTTG..
FD559709       --> .................