1      -     51
UN21558        --> GGGAGCTTACTTCGACACCGGTTCTAAACCTGGTGGCCCTGCCGGCAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- ..................................................
FD536840       <-- ..................................................
EY902131       <-- ..................................................
FD968582       <-- ..................................................
FD553889       <-- ..................................................
EV531854       <-- ..................................................
EV539408       --> GGGAGCTTACTTCGACACCGGTTCTAAACCTGGTGGCCCTGCCGGCAGTG
FD540314       --> ..................................................
FD972759       --> ..................................................
EY905781       --> ..................................................
FD557866       --> ..................................................
EV527665       --> ..................................................

               51     -    101
UN21558        --> GAGGTGGATCCAGCAGCGGTTCTAGTCCTCAAAAACTTGACGCACAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- ..................................................
FD536840       <-- ..................................................
EY902131       <-- ..................................................
FD968582       <-- ..................................................
FD553889       <-- ..................................................
EV531854       <-- ..................................................
EV539408       --> GAGGTGGATCCAGCAGCGGTTCTAGTCCTCAAAAACTTGACGCACAAGGA
FD540314       --> ..................................................
FD972759       --> ..................................................
EY905781       --> ..................................................
FD557866       --> ..................................................
EV527665       --> ..................................................

               101    -    151
UN21558        --> GGCAAGGGAGGCAACCAATGGGACGACAGTGGTGATCACGATGGTGTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- ..................................................
FD536840       <-- ..................................................
EY902131       <-- ..................................................
FD968582       <-- ..................................................
FD553889       <-- ..................................................
EV531854       <-- ..................................................
EV539408       --> GGCAAGGGAGGCAACCAATGGGACGACAGTGGTGATCACGATGGTGTGAC
FD540314       --> ..................................................
FD972759       --> ..................................................
EY905781       --> ..................................................
FD557866       --> ..................................................
EV527665       --> ..................................................

               151    -    201
UN21558        --> CAAGATACATGTTGCAGTTGGTCGAGCGATTGAGCAAATCAGGTTCGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- ..................................................
FD536840       <-- ..................................................
EY902131       <-- ..................................................
FD968582       <-- ..................................................
FD553889       <-- ..................................................
EV531854       <-- ..................................................
EV539408       --> CAAGATACATGTTGCAGTTGGTCGAGCGATTGAGCAAATCAGGTTCGATT
FD540314       --> ..................................................
FD972759       --> ..................................................
EY905781       --> ..................................................
FD557866       --> ..................................................
EV527665       --> ..................................................

               201    -    251
UN21558        --> ATGTCGAGAAGGGACAGATAGAGGAAGGAACCGCCCATGGTGTGAAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- ..................................................
FD536840       <-- ..................................................
EY902131       <-- ..................................................
FD968582       <-- ..................................................
FD553889       <-- ..................................................
EV531854       <-- ..................................................
EV539408       --> ATGTCGAGAAGGGACAGATAAAGGAAGGAACCGCCCATGGTGTGAAAGGA
FD540314       --> ..........GGGACAGATAGAGGAAGGAACCGCCCATGGTGTGAAAGGA
FD972759       --> ..................................................
EY905781       --> ..................................................
FD557866       --> ..................................................
EV527665       --> ..................................................

               251    -    301
UN21558        --> GCTAGATCTTCCATCAAAACTTTTGAGATAAGTCATCCCGACGAGTACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- ..................................................
FD536840       <-- ..................................................
EY902131       <-- ..................................................
FD968582       <-- ..................................................
FD553889       <-- ..................................................
EV531854       <-- ..................................................
EV539408       --> GCTAGATCTTCCATCAAAACTTTTGAGATAAGTCATCCCGACGAGTACCT
FD540314       --> GCTAGATCTTCCATCAAAACTTTTGAGATAAGTCATCCCGACGAGTACCT
FD972759       --> ..................................................
EY905781       --> ..................................................
FD557866       --> ..................................................
EV527665       --> ..................................................

               301    -    351
UN21558        --> CGTCTCCGTGAAGGGTTGGTCTGATTCATCCAACAAGATTGCCGGAATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- ..................................................
FD536840       <-- ..................................................
EY902131       <-- ..................................................
FD968582       <-- ..................................................
FD553889       <-- ..................................................
EV531854       <-- ..................................................
EV539408       --> CGTCTCCGTGAAGGGTTGGTCTGATTCATCCAACAAGATTGCCGGAATTG
FD540314       --> CGTCTCCGTGAAGGGTTGGTCTGATTCATCCAACAAGATTGCCGGAATTC
FD972759       --> ..................................................
EY905781       --> ..................................................
FD557866       --> ..................................................
EV527665       --> ..................................................

               351    -    401
UN21558        --> AGTTCATAACCAACACAAGGACTTCAGAATATTATGGGTTTGAAAAACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- ..................................................
FD536840       <-- ..................................................
EY902131       <-- ..................................................
FD968582       <-- ..................................................
FD553889       <-- ..................................................
EV531854       <-- ..................................................
EV539408       --> AGTTCATAACCAACACAAGGACTTCAGAATATTATGGGTTTGAAAAACTT
FD540314       --> AGTTCATAACTAACAAAAAGCCTTCAGAGTATTACGGGTTTGAAAAATAT
FD972759       --> ......gAACCAACACAAGGACTTCAGAATATTATGGGTTTGAAAAACTT
EY905781       --> ..................................................
FD557866       --> ..................................................
EV527665       --> ..................................................

               401    -    451
UN21558        --> CCCGGAGAAGAAGGTACAGATATTTTACTCGAAGTGAAAGACAAGAAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- ...............................AAGTGAAAGACAAGAAGAT
FD536840       <-- ..................................................
EY902131       <-- ..................................................
FD968582       <-- ..................................................
FD553889       <-- ..................................................
EV531854       <-- ..................................................
EV539408       --> CCCGGAGAAGAAGGTACAGACATTTTACTCGAAGTGAAAGACAAGAAGAT
FD540314       --> CCTGGAGAAGAAGGTACAGATATTTTACCCGAAGTGAAAGACAAGAAGAT
FD972759       --> CCCGGAGAAGAAGGTACAGATATTTTACTCGAAGTGAAAGACAAGAAGAT
EY905781       --> ..................................................
FD557866       --> ..................................................
EV527665       --> ..................................................

               451    -    501
UN21558        --> TGTCGGCTTTCATGGCTTCGCAGACACTCAGCTCAACTCTCTCGGAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- TGTCGGCTTTCATGGCTTCGCAGACACTCAGCTCAACTCTCTCGGAGCTT
FD536840       <-- ..................................................
EY902131       <-- ..................................................
FD968582       <-- ..................................................
FD553889       <-- ..................................................
EV531854       <-- ..................................................
EV539408       --> TGTCGGCTTTCATGGCTTCGCAGACACTCAGCTCAACTCTCTCGGAGCTT
FD540314       --> TGTCGGCTTTCATGGCTTCGCAGACACTCAGCTCAACGCTCTCGGAGCTT
FD972759       --> TGTCGGCTTTCATGGCTTCGCAGACACTCAGCTCAACTCTCTCGGAGCTT
EY905781       --> ..................................................
FD557866       --> ..................................................
EV527665       --> ..................................................

               501    -    551
UN21558        --> ACTTTGCTCCCATCGCCTCAACTCCATTGAAACCAAGCAAGAAGCTAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- ACTTTGCTCCCATCGCCTCAACTCCATTGAAACCAAGCAAGAAGCTAACA
FD536840       <-- .................................................A
EY902131       <-- .................................................g
FD968582       <-- ..................................................
FD553889       <-- ..................................................
EV531854       <-- ..................................................
EV539408       --> ACTTTGCTCCCATCGCCTCAACTCCATTGAAACCAAGCAAGAAGCTAACA
FD540314       --> ACTTTGCTCCCATCGCCTCAACTCCGTTGAAACCAAGCAAGAAGCTAACA
FD972759       --> ACTTTGCTCCCATCGCCTCAACTCCATTGAAACCAAGCAAGAAGCTAACA
EY905781       --> .................................................g
FD557866       --> ..................................................
EV527665       --> ..................................................

               551    -    601
UN21558        --> GCAGTAGGTGGTGATGAAGGAGCTTCATGGGATGATGGTGCTTTCGACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- GCAGTAGGTGGTGATGAAGGAGCTTCATGGGATGATGGTGCTTTCGGCGG
FD536840       <-- GCAGTAGGTGGTGATGAAGGAGCTTCATGGGATGATGGTGCTTTCGACGG
EY902131       <-- GCAGTAGGTGGTGATGAAGGAGCTTCATGGGATGATGGTGCTTTCGACGG
FD968582       <-- GCAGTAGGTGGTGATGAAGGAGCTTCATGGGATGATGGTGCTTTCGACGG
FD553889       <-- ..................................................
EV531854       <-- ..................................................
EV539408       --> GCAGTAGGTGGTGATGAAGGAGCTTCATGGGATGATGGTGCTTTCGGCGG
FD540314       --> GCAGTAGGTGGTGATGAAGGAGCTTCATGGGATGATGGTGCTTTCGACGG
FD972759       --> GCAGTAGGTGGTGATGAAGGAGCTTCATGGGATGATGGTGCTTTCGACGG
EY905781       --> GCAGTAGGTGGTGATGAAGGAGCTTCATGGGATGATGGTGCTTTCGACGG
FD557866       --> ..................................................
EV527665       --> ..................................................

               601    -    651
UN21558        --> CGTTAAGAAAATACAAGTAGGACAGAACAATGATGGTGTATCTTTCGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- CGTTAAGAAAATACAAGTAGGACAGAACAATGATGGTGTATCTTTCGTGG
FD536840       <-- CGTTAAGAAAATACAAGTAGGACAGAACAATGATGGTGTATCTTTCGTGG
EY902131       <-- CGTTAAGAAAATACAAGTAGGACAGAACAATGATGGTGTATCTTTCGTGG
FD968582       <-- CGTTAAGAAAATACAAGTAGGACAGAACAATGATGGTGTATCTTTCGTGG
FD553889       <-- ..................................................
EV531854       <-- ..................................................
EV539408       --> CGTTAAGAAAATACAAGTAGGACAGAACAATGATGGTGTATCTTTCGTGG
FD540314       --> CGTTAAGAAAATACAAGTAGGACAGAACAATGATGGTGTATCTTTCGTGG
FD972759       --> CGTTAAGAAAATACAAGTAGGACAGAACAATGATGGTGTATCTTTCGTGG
EY905781       --> CGTTAAGAAAATACAAGTAGGACAGAACAATGATGGTGTATCTTTCGTGG
FD557866       --> ..................................................
EV527665       --> ..................................................

               651    -    701
UN21558        --> CGGTCGAGTACGAGAATGGCTCTCAGAAAGTTGTTGGCGATGGTCATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- CGGTCGAGTACGAGAATGGCTCTCAGAAAGTTGTTGGCGATGGTCATGGA
FD536840       <-- CGGTCGAGTACGAGAATGGCTCTCAAAAAGTTGTTGGCGATGGTCATGGA
EY902131       <-- CGGTCGAGTACGAGAATGGCTCTCAAAAAGTTGTTGACGATGGTCATGGA
FD968582       <-- CGGTCGAGTACGAGAATGGCTCTCAGAAAGTTGTTGGCGATGGTCATGGA
FD553889       <-- ................gGGCTCTCAGAAAGTTGTTGGCGATGGTCATGGG
EV531854       <-- ..................................................
EV539408       --> CGGTCGAGTACGAGAATGGCTCTCAGAAAGTTGTTGGCGATGGTCATGGA
FD540314       --> CGGTCGAGTACGAGAATGGCTCTCAAAAAGTTGTTGGCGATGGTCATGGA
FD972759       --> CGGTCGAGTACGAGAATGGCTCTCAGAAAGTTGTTGGCGATGGTCATGGA
EY905781       --> CGGTCGAGTACGAGAATGGCTCTCAAAAAGTTGTTGACGATGGTCATGGA
FD557866       --> ................gGGCTCTCAGAAAGTTGTTGGCGATGGTCATGGG
EV527665       --> ..................................................

               701    -    751
UN21558        --> AAACAATCGGCGCTTGGAGTTGAAACGTTTGAGCTCACGAATGGTGAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- AAACAATCGGCGCTTGGAGTTGAAACGTTTGAGCTCACGAATGGTGAGTA
FD536840       <-- AAACAATTTGCGCTTGGAGTTGAAACGTTTGAGCTTACGGATGGTGAGTA
EY902131       <-- AAACAATCTGCGCTTGGAGTTGAAACGTTTGAGCTTACGGATGGTGAGTA
FD968582       <-- AAACAATCGGCGCTTGGAGTTGAAACGTTTGAGCTCACGAATGGTGAGTA
FD553889       <-- AAACAATCGGCGCTTGGAGTTGAAACGTTTGAGCTCACGAATGGTGAGTA
EV531854       <-- ..................................................
EV539408       --> AAACAATCGGCGCTTGGAGTTGAAACGTTTGAGCTCACGAATGGTGAGTA
FD540314       --> AAACAATCTGCGCTTGGAGTTGAAACGTTTGAGCTTACGGATGGTGAGTA
FD972759       --> AAACAATCGGCGCTTGGAGTTGAAACGTTTGAGCTCACGAATGGTGAGTA
EY905781       --> AAACAATCTGCGCTTGGAGTTGAAACGTTTGAGCTTACGGATGGTGAGTA
FD557866       --> AAACAATCGGCGCTTGGAGTTGAAACGTTTGAGCTCACGAATGGTGAGTA
EV527665       --> ..................................................

               751    -    801
UN21558        --> CATTACGTCTGTTGGTGTCTACTATGATAAGATCCATGCAGAGGGACGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- CATTACGTCTGTTGGTGTCTACTATGATAAAATCCATGCAGAGGGACGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536840       <-- CATTACGTCCGTGGGTGTCTACTATGATAAGATCCATGCAGAGGGACGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902131       <-- CATTACGTCCGTGGGTGTCTACTATGATAAGATCCATGCAGAGGGACGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968582       <-- CATTACGTCTGTTGGTGTCTACTATGATAAAACCCATGCAGAGGGACGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553889       <-- CATTACGTCTGTTGGTGTCTACTATGATAAAATCCATGCAGAGGGACGCG  Raphanus raphanistrum subsp. landra
EV531854       <-- .............GGTGTCTACTATGATAAGATCCATGCAGAGGGACGCG  Raphanus raphanistrum subsp. maritimus
EV539408       --> CATTACGTCTGTTGGTGTCTACTATGATAAAATCCATGCAGAGGGACGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540314       --> CATTACGTCCGTGGGTGTCTACTATGATAAGATCCATGCAGAGGGACGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972759       --> CATTACGTCTGTTGGTGTCTACTATGATAAAACCCATGCAGAGGGACGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905781       --> CATTACGTCCGTGGGTGTCTACTATGATAAGATCCATGCAGAGGGACGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557866       --> CATTACGTCTGTTGGTGTCTACTATGATAAAATCCATGCAGAGGGACGCG  Raphanus raphanistrum subsp. landra
EV527665       --> .............GGTGTCTACTATGATAAGATCCATGCAGAGGGACGCG  Raphanus raphanistrum subsp. maritimus

               801    -    851
UN21558        --> GTGTGACAGTGGTGACGTCTTTGGTATTCAAGACTAACAAGCTAGTATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- GTGTGACAGTGGTGACGTCTTTGGTATTCAAGACTAACAAGCTAGTATCA
FD536840       <-- GTGTGACAGTGGTGACGTCTTTGGTATTCAAGACTAACAAGCTAGTATCA
EY902131       <-- GTGTGACAGTGGTGACGTCTTTGGTATTCAAGACTAACAAGCTAGTATCA
FD968582       <-- GTGTGACAGTGGTGACGTCTTTGGTATTCAAGACTAACAAGCTAGTATCA
FD553889       <-- GTGTGACAGTGGTGACGTCTTTGGTATTCAAGACTAACAAGCAAGTATCA
EV531854       <-- GTGTGACAGTGGTGACGTCTTTGGTATTCAAGACTAACAAGCTAGTATCT
EV539408       --> GTGTGACAGTGGTGACGTCTTTGGTATTCA-GACTAACAAGCTAGTATCA
FD540314       --> GTGTGACAGTGGTGACGTCTTTGGTATTCAAGACTAACAAGCTAGTATCA
FD972759       --> GTGTGACAGTGGTGACGTCTTTGGTATTCAAGACTAACAAGCTAGTATCA
EY905781       --> GTGTGACAGTGGTGACGTCTTTGGTATTCAAGACTAACAAGCTAGTATCA
FD557866       --> GTGTGACAGTGGTGACGTCTTTGGTATTCAAGACTAACAAGCAAGTATCA
EV527665       --> GTGTGACAGTGGTGACGTCTTTGGTATTCAAGACTAACAAGCTAGTATCT

               851    -    901
UN21558        --> CAACCATTTGGAATGACCGGTGGAGAATATGTTGAGCTTAAGGAAGAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- CAACCATTTGGAATGACCGGTGGAGAATATGTTGAGCTTAAGGAAGAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536840       <-- CAACCATTTGGAATGACCGGTGGAGAATATGTTGAGCTTAAGGAAGAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902131       <-- CAACCATTTGGAATGACCGGTGGAGAATATGTTGAGCTTAAGGAAGAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968582       <-- CAACCATTTGGAGTGACCGGTGGAGAATATGTTGAGCTTAAGGAAGAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553889       <-- CAACCATTTGGAATGACCGGTGGAGAATACGTTGAACTTAAGGAAGAAGG  Raphanus raphanistrum subsp. landra
EV531854       <-- CAACCATTTGGAATGACCGGTGGAGAATACGTTGAACTCAAGGAAGAAGG  Raphanus raphanistrum subsp. maritimus
EV539408       --> CA-CCATTTGGAtga...................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540314       --> CAACCATTTGGAATGACCGGTGGAGAATATGTTGAGCT............  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972759       --> CAACCATTTGGAGTGACCGGTGGAGAATATGTTGAGCTTAAag.......  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905781       --> CAACCATTTGGAATGACCGGTGGAGAATATGTTGAGCTTAAGGAAGAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557866       --> CAACCATTTGGAATGACCGGTGGAGAATACGTTGAACTTAAGGAAGAAGG  Raphanus raphanistrum subsp. landra
EV527665       --> CAACCATTTGGAATGACCGGTGGAGAATACGTTGAACTCAAGGAAGAAGG  Raphanus raphanistrum subsp. maritimus

               901    -    951
UN21558        --> TAACAAGATCGTTGGGTTCCATGGGAAAGCTAGCGATTGGGTTCATCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- TAACAAGATCGTTGGGTTCCATGGGAAAGCTAGCGATTGGGTTCATCAAA
FD536840       <-- TAACAAGATCGTTGGGTTCCATGGGAAAGCTAGCGATTGGGTTCATCAAA
EY902131       <-- TAACAAGATCGTTGGGTTCCATGGGAAAGCTAGCGATTGGGTTCATCAAA
FD968582       <-- TAACAAGATCGTTGGGTTCCATGGGAAAGCTAGCGATTGGGTTCATCAAA
FD553889       <-- TAACAAGATCGTTGGATTCCATGGAAAAGCTAGCGATTGGGTTCATCAAA
EV531854       <-- TAACAAGATCGTTGGGTTCCATGGGAAAGCTAGCGATTGGGTTCATCAAA
EV539408       --> ..................................................
FD540314       --> ..................................................
FD972759       --> ..................................................
EY905781       --> TAACAAGATCGTTGGGTTCCATGGGAAAGCTAGCGATTGGGTTCATCAAA
FD557866       --> TAACAAGATCGTTGGATTCCATGGAAAAGCTAGCGATTGGGTTCATCAAA
EV527665       --> TAACAAGATCGTTGGGTTCCATGGGAAAGCTAGCGATTGGGTTCATCAAA

               951    -   1001
UN21558        --> TTGGAGTCTATGTTGCACCAGTCACCAAATGAAAAGCTTGTTGTGGGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- TTGGAGTCTATGTTGCACCAGTCACCAAATGAAAAGCTTGTTGTGGGTTG
FD536840       <-- TTGGAGTCTATGTTGCACCAGTCACCAAATGAAAAGCTTGTTGTGGGTTG
EY902131       <-- TTGGAGTTTATGTTGCACCAGTCACCAAATGAAAAGCTTGTTGTGGGTTG
FD968582       <-- TTGGAGTTTATGTTGCACCAGTCACCAAATGAAAAGCTTGTTGTGGGTTG
FD553889       <-- TTGGAGTCTACGTTGCACCGGTCACCAAATGAAAAGCTTGTTGTGGGTTG
EV531854       <-- TTGGAGTCTATGTTGCACCAGTCACCAAATGAAAAGCTTGTTGTGGGTTG
EV539408       --> ..................................................
FD540314       --> ..................................................
FD972759       --> ..................................................
EY905781       --> TTGGAGTCTATGTTGCACCAGTCACCAAATGAAAAGCTTGTTGTGGGTTG
FD557866       --> TTGGAGTCTACGTTGCACCGGTCACCAAATGAAAAGCTTGTTGTGGGTTG
EV527665       --> TTGGAGTCTATGTTGCACCAGTCACCAAATGAAAAGCTTGTTGTGGGTTG

               1001   -   1051
UN21558        --> GTTCTTTGATTTCCAAATATGAATAAAGTTATGTCAGAGGCCTACTGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- GTTCTTTGATTTCCAAATATGAATAAAGTTATGTCAGGGGCCTACTGGTG
FD536840       <-- GTTCTTTGATTTCCAAATATGAATAAAGTTATGTCAGAGGC.........
EY902131       <-- GTTCTTTGATTTCCAAATATGAATAAAGTTATGTCAGAGGCCTACTGGTG
FD968582       <-- GTTCTTTGATTTCCAAATATGAATAAAGTTATGTCAGAGGCCTACTGGTG
FD553889       <-- GTTCTTTGATTTCCAAATATGAATAAAGTTATGTCAGAGGCCTACTGGTG
EV531854       <-- GTTCTTTGATTTCCAAATATGAATAAAGTTATGTCAGAGGCCTACTGGTG
EV539408       --> ..................................................
FD540314       --> ..................................................
FD972759       --> ..................................................
EY905781       --> GTTCTTTGATTTCCAAATATGAATAAAGTTATGTCAGAGGCCTACTGGTG
FD557866       --> GTTCTTTGATTTCCAAATATGAATAAAGTTATGTCAGAGGCCTACTGGTG
EV527665       --> GTTCTTTGATTTCCAAATATGAATAAAGTTATGTCAGAGGCCTACTGGTG

               1051   -   1101
UN21558        --> GATTGAGGTCTCTTGATGGCTATGTTTTTCTGTTTGTGCTTGAGTGTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- GATTGAGGCCTCTTGATGGCTATGTTTTTCTGTTTGTGCTTGAGTGTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536840       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902131       <-- GATTGAGGCCTCTTGATGGCTATGTTTTTCTGTTTGTGCTTGAGTGTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968582       <-- GATTGAGGCCTCTTGATGGCTATGTTTTTCTGTTTGTGCTTGAGTGTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553889       <-- GATTGAGGTCTCTTGATGGCTATGTTTTTCTGTTTGTGCTTGAGTGTGAT  Raphanus raphanistrum subsp. landra
EV531854       <-- GATTGAGGTCTCTTGATGGCTATGTTTTTCTGTTTGTGCTTGAGTGTGAT  Raphanus raphanistrum subsp. maritimus
EV539408       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540314       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972759       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905781       --> GATTGAGGCCTCTTGATGGCTATGTTTTTCTGTTTGTGCTTGAGTGTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557866       --> GATTGAGGTCTCTTGATGGCTATGTTTTTCTGTTTGTGCTTGAGTGTGAT  Raphanus raphanistrum subsp. landra
EV527665       --> GATTGAGGTCTCTTGATGGCTATGTTTTTCTGTTTGTGCTTGAGTGTGAT  Raphanus raphanistrum subsp. maritimus

               1101   -   1151
UN21558        --> GTTTGTGGAGTGTGATGTTTGTGTTGTCGCTTGTGGAATTTAATAAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543199       <-- GTTTGTGGAGTGTGATGTTTGTGTTGTCGCTTGTGGAATTTAATAAAAGG
FD536840       <-- ..................................................
EY902131       <-- GTTTGTGGAGTGTGATGTTTGTGTTGTCGCTTGTGGAATTTAATAAAAGG
FD968582       <-- GTTTGTGGAGTGTGATGTTTGTGTTGTCGCTTGTGGAATTTAATAAAAGG
FD553889       <-- GTTTGTGGAGTGTGATGTT...............................
EV531854       <-- GTTTGTTGAGTGTGATGTTTGTGTTGTCGCTTGTGGAATTTAATAAAAGG
EV539408       --> ..................................................
FD540314       --> ..................................................
FD972759       --> ..................................................
EY905781       --> GTTTGTGGAGTGTGATGTTTGTGTTGTCGCTTGTGGAATTTAATA.....
FD557866       --> GTTTGTGGAGTGTGATGTTTGTGTTGTCGCTTGTGGAATTTAATAAAAGG
EV527665       --> GTTTGTTGAGTGTGATGTTTGTGTTGTCGCTTGTGGAATTTAATAAAAGG

               1151   -   1201
UN21558        --> GGTTTTGCGTTTtag.
                   ~~~~~~~~~~~~~~~~
EV543199       <-- GGTTTTGCGTTT....
FD536840       <-- ................
EY902131       <-- GGTTTCGCGTTattag
FD968582       <-- GGTTTTGCGTTTatt.
FD553889       <-- ................
EV531854       <-- GGTTTTGCGTTT....
EV539408       --> ................
FD540314       --> ................
FD972759       --> ................
EY905781       --> ................
FD557866       --> GGTTTTGCTTTT....
EV527665       --> GGTTTTGCGTTT....