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Alignment for radish unigene UN21615

               1      -     51
UN21615        --> AACCCGAAGAAAAATATAAGATATTATCATCATCAAAACTAAACAAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- .......AGAAAAATATAAGATATTATCATCATCAAAACTAAACAAGAGA
EY941935       <-- ..................................................
EW726420       <-- ..................................................
FD531323       --> AACCCGAAGAAAAATATAAGATATTATCATCATCAAAACTAAACAAGAGA
EV573395       --> .......gGAAAAATATAAGATATTATCATCATCAAAACTAAACAAGAGA
EY937411       --> ...........AAATATAAGATATTATCATCATCAAAACTAAACAAGAGA
FD976808       --> ............aagATAAGATATTATCATCATCAAAACTAA-CAAGAGA
FD977265       --> ............aagATAAGATATTATCATCATCAAAACTAA-CAAGAGA
EX767180       --> .................................CAAAACTAAACAAGAGA
FD958629       --> ..................................AAAACTAAACAAGAGA
FD547423       --> .......................................ctAACAAGAGA
EV573305       --> ..................................................
EX769852       --> ..................................................

               51     -    101
UN21615        --> TGGGCTTCATAAGTCAAGGTTTACATTATTGAAAGTCTCATAAAAAAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- TGGGCTTCATAAGTCAAGGTTTACATTATTGAAAGTCTCATAAAAGAAAC
EY941935       <-- ..................................................
EW726420       <-- ..................................................
FD531323       --> TGGGCTTCATAAGTCAAGGTTTACATT---GAAAGTCTCATAAAAAAAAC
EV573395       --> TGGGCTTCATAAGTCAAGGTTTACATTATTGAAAGTCTCATAAAAAAAAC
EY937411       --> TGGGCTTCATAAGTCAAGGTTTACATTATTGAAAGTCTCATAAAAGAAAC
FD976808       --> TGGGCTTCATAAGTCAAGGTTTACATTATTGAAAGTCTCATAAAAAAAAC
FD977265       --> TGGGCTTCATAAGTCAAGGTTTACATTATTGAAAGTCTCATAAAAAAAAC
EX767180       --> TGGGCTTCATAAGTCAAGGTTTACATTATTGAAAGTCTCATAAAAAAAAC
FD958629       --> TGGGCTTCATAAGTCAAGGTTTACATTATTGAAAGTCTCATAAAAAAAAC
FD547423       --> TGGGCTTCATAAGTCAAGGTTTACATTATTGAAAGTCTCATAAAAAAAAC
EV573305       --> ..................................................
EX769852       --> ..................................................

               101    -    151
UN21615        --> ATGCTTATAATTAGATAAAAGGAGAAATAAACATGATGAAAAATCCCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ATGCTTATAATTAGATAAAAGGAGAAATATACATGATGAAAAATCCCTGA
EY941935       <-- ..................................................
EW726420       <-- ..................................................
FD531323       --> ATGCTTATAATTAGATAAAAGGAGAAATAAACATGATGAAAAATCCCTGA
EV573395       --> ATGCTTGTAATTAGATAAAAGGAGAAATAAACATGATGAAAAATCCCTGA
EY937411       --> ATGCTTATAATTAGATAAAAGGAGAAATAAACATGATGAAAAATCCCTGA
FD976808       --> ATGCTTATAATTAAATAAAAGGAGAAATAAACATGATGAAAAATCCCTGA
FD977265       --> ATGCTTATAATTAAATAAAAGGAGAAATAAACATGATGAAAAATCCCTGA
EX767180       --> ATGCTTATAATTAGATAAAAGGAGAAATAAACATGATGAAAAATCCCTGA
FD958629       --> ATGCTTATAATTAGATAAAAGGAGAAATAAACATGATGAAAAATCCCTGA
FD547423       --> ATGCTTATAATTAAATAAAAGGAGAAATAAACATGATGAAAAATCCCTGA
EV573305       --> .........ATTAGATAAAAGGAGAAATAAACATGATGAAAAATCCCTGA
EX769852       --> ..................................................

               151    -    201
UN21615        --> AACATGGTATTAAATAAGTTTAGAAATGATAAAAGG-AACCTAACCTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- AACATGGTATTAAATAAGTTTAGAAATGATAAAAGG-AACCTAACCTCGG  Raphanus sativus cv Early Scarlet Globe
EY941935       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW726420       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD531323       --> AACATGGTATTAAATAAGTTTAGAAGTGATAAAAGGGAACCTAACCTCGG  Raphanus raphanistrum subsp. maritimus
EV573395       --> AACATGGTATTAAATAAGTTTAGAAATGATAAAAGG-AACCTAACCTCGG  Raphanus raphanistrum subsp. landra
EY937411       --> AACATGGTATTAAATAAGTTTAGAAATGATAAAAGG-AACCTAACCTCGG  Raphanus sativus cv Early Scarlet Globe
FD976808       --> AACATGGTATTAAATAAGTTTAGAAGTGATAAA-GG-AACCTAACCTCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977265       --> AACATGGTATTAAATAAGTTTAGAAGTGATAAA-GG-AACCTAACCTCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX767180       --> AACATGGTATTAAATAAGTTTAAAAGTGATAAAAGGGAACCTAACCTCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958629       --> AACATGGTATTAAATAAGTTTAGAAGTGATAAAAGGGAACCTAACCTCGG  Raphanus raphanistrum subsp. maritimus
FD547423       --> AACATGGTATTAAATAAGTTTAAAAGTGATAAA-GG-AACCTAACCTCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573305       --> AACATGGTATTAAATAAGTTTAGAAATGATAAAAGG-AACCTAACCTCGG  Raphanus raphanistrum subsp. landra
EX769852       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               201    -    251
UN21615        --> GAGATATAGATTCAACTTTAGCCGCTCGAGTTAACAGAGTTCCAGAGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- GAGATATAGATTCAACTTTAGCCGCTCGAGTTAACAGAGTTCCAGAGCTG  Raphanus sativus cv Early Scarlet Globe
EY941935       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW726420       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD531323       --> GAGATATAGATTCAACTTTAGCCGCTGGAGTTAACAGAGTTCCAGAGCTG  Raphanus raphanistrum subsp. maritimus
EV573395       --> GAGATATAGATTCAACTTTAGCCGCTCGAGTTAACAGAGTTCCAGAGCTG  Raphanus raphanistrum subsp. landra
EY937411       --> GAGATATAGATTCAACTTTAGCCGCTCGAGTTAACAGAGTTCCAGAGCTG  Raphanus sativus cv Early Scarlet Globe
FD976808       --> GAGATATAGATTCAACTTCAGCCGCTCGAGTTAACAGAGTTCCAGAGCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977265       --> GAGATATAGATTCAACTTCAGCCGCTCGAGTTAACAGAGTTCCAGAGCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX767180       --> GAGATATAGATTCAACTTTAGCCGCTGGAGTTAACAGAGTTCCAGAGCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958629       --> GAGATATAGATTCAACTTTAGCCGCTGGAGTTAACAGAGTTCCAGAGCTG  Raphanus raphanistrum subsp. maritimus
FD547423       --> G.................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573305       --> GAGATATAGATTCAACTTTAGCCGCCCGAGTTAACAGAGTTCCAGAGCTG  Raphanus raphanistrum subsp. landra
EX769852       --> ..........TTCAACTTTAGCCGCTGGAGTTAACAGAGTTCCAGAGCTG  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN21615        --> GACCCACTTGACCATAGCATCAGCAGCTTGAGTGAAGGCAGGGTCATCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- GACCCACTTGACCATGGCATCAGCAGCTTGAGTGAAGGCAGGGTCATCTG  Raphanus sativus cv Early Scarlet Globe
EY941935       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW726420       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD531323       --> GACCCACTTGACCATAGCATCAGCAGCTTGAGTGAAGGCAGGGTCATCTG  Raphanus raphanistrum subsp. maritimus
EV573395       --> GACCCACTTGACCATGGCATCAGCAGCTTGAGTGAAGGCAGGGTCATCTG  Raphanus raphanistrum subsp. landra
EY937411       --> GACCCACTTGACCATGGCATCAGCAGCTTGAGTGAAGGCAGGGTCATCTG  Raphanus sativus cv Early Scarlet Globe
FD976808       --> GACCCACTTGACCATAGCATCAGCAGCTTGAGTGAAGGCAGGGTCATCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977265       --> GACCCACTTGACCATAGCATCAGCAGCTTGAGTGAAGGCAGGGTCATCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX767180       --> GACCCACTTGACCATAGCATCAGCAGCTTGAGTGAAGGCAGGGTCATCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958629       --> GACCCACTTGACCATAGCATCAGCAGCTTGAGTGAAGGCAGGGTCATCTG  Raphanus raphanistrum subsp. maritimus
FD547423       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573305       --> GACCCACTTGACCATGGCATCAGCAGCTTGAGTGAAGG............  Raphanus raphanistrum subsp. landra
EX769852       --> GACCCCCTTGACCATAGCATCAGCAGCTTGAGTGAAGGGAGGGTCATCTG  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN21615        --> AACCCAACTGCTCTTTCACCGCTTTAGCAAGCTCAACCACACAATCTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- AATCCAACTGCTCTTTCACCGCTTTAGCAGGCTCAACCACACAATCTTCA
EY941935       <-- ..................................................
EW726420       <-- ..................................................
FD531323       --> AACCCAACTGCTCTTTCACTGCTTTAGCAAGCTCAACCACACAATCTTCA
EV573395       --> AACCCAACTGCTCTTTCACCGCTTTAGCAAGCTCAACCACACAATCTTCA
EY937411       --> AACCCAACTGCTCTTTCACCGCCTTAGCAAGCTCAACCACACAATCTTCA
FD976808       --> AACCCAACTGCTCTTTCACCGCTTTAGCAAGCTCAATCACACAATCTTCA
FD977265       --> AACCCAACTGCTCTTTCACCGCTTTAGCAAGCTCAATCACACAATCTTCA
EX767180       --> AACCCAACTGCTCTTTCACCGCTTTAGCAAGCTCAACCACACAAACTTCA
FD958629       --> AACCCGACTGCTCTTTCACCGCTTTAGCAAGCTCAACCACACAATCTTCA
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> AACCCAACTGCTCTTTCACCGCTTTAGCAAGCTCAACCACACAATCTTCA

               351    -    401
UN21615        --> ACCTTAACCGCAGTCTCAGGCAACTTCAAAGACTCGAAAAACGGAACACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ACCTTAACCGCGGTCTCAGGCAGCTTCAAAGACTCGAAAAACGGAACACT
EY941935       <-- ..................................................
EW726420       <-- ..................................................
FD531323       --> ACCTTAACCGCAGTCTCAGGCAACTTCAAAGACTCGAAAAACGGAACACT
EV573395       --> ACCTTAACCGCGGTCTCAGGCAACTTCAAAGACTCGAAAAACGGAACACT
EY937411       --> ACCTTAACCGCGGTCTCAGGCAACTTCAAAGACTCGAAAAACGGAACACT
FD976808       --> ACCTTAACCGCACTCTCAGGCAATTTCAAAGACTCGAAAAACGGAACACT
FD977265       --> ACCTTAACCGCACTCTCAGGCAATTTCAAAGACTCGAAAAACGGAACACT
EX767180       --> ACCTTAACCGCAGTCTCAGGCAACTTCAAAGACTCGAAAAACGGAGCACT
FD958629       --> ACCTTAACCGCAGTCTCAGGCAACTTCAAAGACTCGAAAAACGGAACACT
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ACCTTAACCGCAGTCTCAGGCAACTTCAAAGACTCGAAAAACGGAACACT

               401    -    451
UN21615        --> CTTCTCCATCAGCTTCATCCCTTCCCATTTCTTCCTCAAACTCTCCACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- CTTCTCCATCAGCTTCATTCCTTCCCATTTCTTCCTCAAACTCTCCACAG
EY941935       <-- ..................................................
EW726420       <-- ..................................................
FD531323       --> CTTCTCCATCAGCTTCATCCCTTCCCATTTCTTCCTCAAACTCTCCACAG
EV573395       --> CTTCTCCATCAGCTTCATTCCTTCCCATTTCTTCCTCAAACTCTCCACAG
EY937411       --> CTTCTCCATCAGCTTCATTCCTTCCCATTTCTTCCTCAAACTCTCCACAG
FD976808       --> CTTCTCCATCAGCTTCATCCCTTCCCATTTCTTCCTCAAACTCTCCACAG
FD977265       --> CTTCTCCATCAGCTTCATCCCTTCCCATTTCTTCCTCAAACTCTCCACAG
EX767180       --> CTTCTCCATCAGCTTCATCCCTTCCCATTTC---CTCAAACTCTCCACAG
FD958629       --> CTTCTCCATCAGCTTCATCCCTTCCCATTTCTTCCTCAAACTCTCCACAG
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> CTTCTCCATCAGCTTCATCCCTTCCCATTTCTTCCTCAAACTCTCCACAG

               451    -    501
UN21615        --> CATCTCCCCTCTCGTTCCTCCACACATAAGGCAGACCAGTTTTCACACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- CATCTCCTCTCTCGTTCCTCCACACATAAGGCAGACCAGTTTTCACACCG
EY941935       <-- ..................................................
EW726420       <-- ..................................................
FD531323       --> CATCTCCCCTCTCGTTCCTCCACACATAAGGCAGACCAGTTTTCACACCG
EV573395       --> CATCTCCCTTCTCGTTCCTCCACACATAAGGGAGACCAGTTTTCACACCG
EY937411       --> CATCTCCTCTCTCGTTCCTCCACACATAAGGCAGACCAGTTTTCACACCG
FD976808       --> CATCTCCCCTCTCGTTCCTCCACACATAAGGCAGACCAGTTTTCACACCG
FD977265       --> CATCTCCCCTCTCGTTCCTCCACACATAAGGCAGACCAGTTTTCACACCG
EX767180       --> CATCTCCCCTCTCGTTCCTCCACACATAAGGCAGACCAGTTTTCACACCG
FD958629       --> CATCTCCCCTCTCGTTCCTCCACACATAAGGCAGACCAGTTTTCACACCG
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> CATCTCCCCTCTCGTTCCTCCACACATAAGGCAGA...............

               501    -    551
UN21615        --> TAACCCAAATGGTCAGAGATGTGTTTCAGACACATCCCACACCAAACATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- TAACCCAAATGGTCAGAGATGTGTTTCAGACACATCCCA--CCAAACATC
EY941935       <-- ..................................................
EW726420       <-- ..................................................
FD531323       --> TAACCCAAATGGTCAGAGATGTGTTTCAGACACATCCCACACCAAACATC
EV573395       --> TAACCCAAATGGTCAGAGATGTGTTTCAGACACATCCCACACCAAACATC
EY937411       --> TAACCCAAATGGTCAGAGATGTGTTTCAGACACATCCCACACCAAACATC
FD976808       --> TAACCCAAATGGTCAGAGATGTGTTTCAGACACATCCCACACCAAACATC
FD977265       --> TAACCCAAATGGTCAGAAATGTGTTTCAAACACATCCCACACCAAACATC
EX767180       --> TAACCCAAATGGTCAGAGATGTGTTTCAGACACATCCCACACCAAACATC
FD958629       --> TAACCCAAATGGTCAGAGATGTGTTTCAGACAC.................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               551    -    601
UN21615        --> TTCAAGCGTTTCCCATCTCACTTTCCCTTCACCAGCAATTCTAAGCGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- TTCAAGCGTTTCCCATCTCACTTTCCCTTCACCAGCAATTCTAAGCGCAG
EY941935       <-- ..................................................
EW726420       <-- ..................................................
FD531323       --> TTCAAGCGTTTCCCATCTCACTTTCCCTTCACCAGCAATTCTAAGCGCAG
EV573395       --> TTCAAGCGTTTCCCATCTCACTTTCCCTTCACCAGCAATTCTAAGCGCAG
EY937411       --> TTCAAGCGTTTCCCATCTCACTTTCCCTTCACCAGCAATTCTAAGCGCAG
FD976808       --> TTCAAGCGTTTCCCATCTCACTTTCCCTTCACCAGCAATTCTAAGCGCAG
FD977265       --> TTCAAGCGTTTCCCATCTCACTTTCCCTTCACCAGCAATTCTAAGCGCAG
EX767180       --> TTCAAGCGTTTCCCATCTCACTTTCCCTTCACCAGCAATTCTAAGCGCAG
FD958629       --> ..................................................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               601    -    651
UN21615        --> GCACCAAAGCTGGTCCCACCAACTCACGGTTAAAAGCGATGTTGATCCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- GCACCAAAGCTGGTCCCACCAACTCACGGTTAAAAGCGATGTTc......
EY941935       <-- ..................................................
EW726420       <-- ..................................................
FD531323       --> GCACCAAAGCTGGTCCCACCAACTCACGGTTAAAAGCGATGTTGATCCCG
EV573395       --> GCACCAAAGCTGGTCCCACCAACTCACGGTTAAAAGCGATGTTGATCCCA
EY937411       --> GCACCAAAGCTGGTCCCACCAACTCACGGTTAAAAGCGATGTTGATCCCG
FD976808       --> GCACCAAAGCTGGTCCCACCAACTCCCGGTTAAAAGCGATGTTGATCCCG
FD977265       --> GCACCAAAGCTGGTCCCACCAACTCCCGGTTAAAAGCGATGTTGATCCCG
EX767180       --> GCACCAAAGCTGGTCCCACCAACTCACGGTTAAAAGCGATGTTGATCCCG
FD958629       --> ..................................................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               651    -    701
UN21615        --> CTTATCGGCAACATAGCTTTCAAGGGAACGGTCATAACCGCATCAACATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ..................................................
EY941935       <-- ................gcTTCAAGGGA-C-GTCATAACCGCATCAACATA
EW726420       <-- ..................................................
FD531323       --> CTTATCGGCAACATAGCCTTGAGGGGAACGGTCATGACCGCATCAACATA
EV573395       --> CTTACCGGCAACATCGCCTTGAGGGGAACGGTCATGACCGCATCAACATA
EY937411       --> CTTATGGGTAACATAGCTTTCAAGGGGACGGTCATAACCGCATCAACATA
FD976808       --> CTTATCGGCAACATAGCTTTCAAGGGAACGGTCATAACCGCATCAACATA
FD977265       --> CTTATCGGCAACATAGCTTTCAAGGGAACGGTCATAACCGCATCAACATA
EX767180       --> CTTATCGGCAACATAGCCTTGAGGGGAACGGTCATGACCGCATCAACATA
FD958629       --> ..................................................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               701    -    751
UN21615        --> GGAAGTGTTCCTCTGCTCTGTCTTGAGAGCTTGCGTCGGAGCATCAAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY941935       <-- G-AAGTG--TCTCTGCTCTGTCT-GAGAGCT-GCGTGGGAGCATCAAGAT  Raphanus sativus cv Early Scarlet Globe
EW726420       <-- .............TGCTCTGTCTTGAGAGCTTGCGTGGGAGCATCAAGAT  Raphanus sativus cv Early Scarlet Globe
FD531323       --> GGAAGTGTTCCTCTGCTCTGTCTTGAGAGCTTGCGTCGGAGCGTCAAGAT  Raphanus raphanistrum subsp. maritimus
EV573395       --> CGAAGTGTTCCTCTGCTCTGTCTTGAGAGCTTGCGTCGGAGCGTCAAGAT  Raphanus raphanistrum subsp. landra
EY937411       --> GGAAGTGTTCCTCTGCTCTGTCTTGAGAGCTTGCGTGGGAGCATCAAGAT  Raphanus sativus cv Early Scarlet Globe
FD976808       --> GGAAGTGTTCCTCTGCTCTGTCTTGAGAGCTTGCGTCGGAGCATCAAGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977265       --> GGAAGTGTTCCTCTGCTCTGTCTTGAGAGCTTGCGTCGGAGCATCAAGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX767180       --> GGAAGTGTTCCTCTGCTCTGTCTTGAGAGC--GCGTCGGAGCGTCAAGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958629       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD547423       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573305       --> ..................................................  Raphanus raphanistrum subsp. landra
EX769852       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN21615        --> CAGCCAAGTTAAGCCAAAGTCCACAGGAAGCAGCACAGGGGACGCCACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ..................................................
EY941935       <-- CAGCCAAGT-AAGCCAAAGTCCACAGGAAGCAGCACAGGGGACGCCACTT
EW726420       <-- CAGCCAAGTTAAGCCAAAGTCCACAGGAAGCAGCACAGGGGACGCCACTT
FD531323       --> CAGCCAAGTTAAGCCAAAGTCCACAG-AAGCAGCACAAGGGACGCCACTT
EV573395       --> CAGCCAAGTTAAGCCAAAGTC.............................
EY937411       --> CAGCCAAGTTAAGCCAAAGTCC............................
FD976808       --> CAGCCAAGTTAAGCCAAAGT..............................
FD977265       --> CAGCCAAGTTAAGCCAAAGTCCACATGAAGCAGCACAGGGGACGCCACTT
EX767180       --> CAGCCAAGTTAAGCCAAAGTCCACAGGAAGCAGCACAAGGGACGCCACTT
FD958629       --> ..................................................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               801    -    851
UN21615        --> CTAAGGCTGAACGGGTACCCACGCACAAAATCAGCTCCCTCGCAGTAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ..................................................
EY941935       <-- CTAAGGCTGAACGGGTACCCACGCACAAAATCAGCTCCCTCGCAGTAAGG
EW726420       <-- CTAAGGCTGAACGGGTACCCACGCACAAAATCAGCTCCCTCGCAGTAAGG
FD531323       --> CTAAG-CTGAACGGGTACCCACGAACAAAATCAGCTCCCTCGCAGTAAG-
EV573395       --> ..................................................
EY937411       --> ..................................................
FD976808       --> ..................................................
FD977265       --> C.................................................
EX767180       --> ..................................................
FD958629       --> ..................................................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               851    -    901
UN21615        --> ATCGTAAAGGGTATTGAAGAAGAGAGGCGTGGCAGGGTTCTCGAGGTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ..................................................
EY941935       <-- ATCGTAAAGGGTATTGAAGAAGAGAGGCGTGGCAGGGTTCTCGAGGTTGG
EW726420       <-- ATCGTAAAGGGTATTGAAGAAGAGAGGCGTGGCAGGGTTCTCGAGGTCGG
FD531323       --> ATCGTAA...........................................
EV573395       --> ..................................................
EY937411       --> ..................................................
FD976808       --> ..................................................
FD977265       --> ..................................................
EX767180       --> ..................................................
FD958629       --> ..................................................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               901    -    951
UN21615        --> TCACGTGCTGAGAAACAGCATCCACTAGAACTCCCTTGGGATCCTTAGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ..................................................
EY941935       <-- TCACGTGCTGAGAAACAGCATCCACTAGAACTCCCTTGGGATCCTTAGCG
EW726420       <-- TCACGTGCTGAGAAACAGCATCCACTAGAACTCCCTTGGGATCCTTAGCG
FD531323       --> ..................................................
EV573395       --> ..................................................
EY937411       --> ..................................................
FD976808       --> ..................................................
FD977265       --> ..................................................
EX767180       --> ..................................................
FD958629       --> ..................................................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               951    -   1001
UN21615        --> GGAACACAGTCATCATCGATGGAGACAATGTACTTCTTTTTGGACACGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ..................................................
EY941935       <-- GGAACACAGTCATCATCGATGGAGACAATGTACTTCTTTTTGGACACGAG
EW726420       <-- GGAACACAGTCATCATCGATGGAGACAATGTACTTCTTTTTGGACACGAG
FD531323       --> ..................................................
EV573395       --> ..................................................
EY937411       --> ..................................................
FD976808       --> ..................................................
FD977265       --> ..................................................
EX767180       --> ..................................................
FD958629       --> ..................................................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               1001   -   1051
UN21615        --> GTAACCGAAATATCTGCAGGAATAGCCAGAGAAGATGGCGGCATTGGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ..................................................
EY941935       <-- GTAACCGAAATATCTGCAGGAATAGCCAGAGAAGATGGCGGCATTGGCAG
EW726420       <-- GTAACCGAAATATCTGCAGGAATAGCCAGAGAAGATGGCGGCATTGGCAG
FD531323       --> ..................................................
EV573395       --> ..................................................
EY937411       --> ..................................................
FD976808       --> ..................................................
FD977265       --> ..................................................
EX767180       --> ..................................................
FD958629       --> ..................................................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               1051   -   1101
UN21615        --> CGCCGACGACTTTCTCAATGTCGGGCTTGGAGTAGACGTCCACATCAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ..................................................
EY941935       <-- CGCCGACGACTTTCTCAATGTCGGGCTTGGAGTAGACGTCCACATCAAAG
EW726420       <-- CGCCGACGACTTTCTCAATGTCGGGCTTGGAGTAGACGTCCACATCAAAG
FD531323       --> ..................................................
EV573395       --> ..................................................
EY937411       --> ..................................................
FD976808       --> ..................................................
FD977265       --> ..................................................
EX767180       --> ..................................................
FD958629       --> ..................................................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               1101   -   1151
UN21615        --> CCTTCGGGTACGTTGAGGTCGTCCTTGAGCTCAGGGTCTTTGACGATAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ..................................................
EY941935       <-- CCTTCGGGTACGTTGAGGTCGTCCTTGAGCTCAGGGTCTTTGACGATAAT
EW726420       <-- CCTTCGGGTACGTTGAGGTCGTCCTTGAGCTCAGGGTCTTTGACGATAAT
FD531323       --> ..................................................
EV573395       --> ..................................................
EY937411       --> ..................................................
FD976808       --> ..................................................
FD977265       --> ..................................................
EX767180       --> ..................................................
FD958629       --> ..................................................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               1151   -   1201
UN21615        --> GAGATGGAAACCAGAGAAAAAGGGTTTCCAGCTGTTCAGGAACTTAGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ..................................................
EY941935       <-- GAGATGGAAACCAGAGAAAAAGGGTTTCCAGCTGTTCAGGAACTTAGTGA
EW726420       <-- GAGATGGAAACCAGAGAAAAAGGGTTTCCAGCTGTTCAGGAACTTAGTGA
FD531323       --> ..................................................
EV573395       --> ..................................................
EY937411       --> ..................................................
FD976808       --> ..................................................
FD977265       --> ..................................................
EX767180       --> ..................................................
FD958629       --> ..................................................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               1201   -   1251
UN21615        --> GGTCAGCGTTGAGGGCACCAATGACGATGTCAACCTCGTTCTTGTTTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ..................................................
EY941935       <-- GGTCAGCGTTGAGGGCACCAATGACGATGTCAACCTCGTTCTTGTTTATC
EW726420       <-- GGTCAGCGTTGAGGGCACCAATGACGATGTCAACCTCGTTCTTGTTTATC
FD531323       --> ..................................................
EV573395       --> ..................................................
EY937411       --> ..................................................
FD976808       --> ..................................................
FD977265       --> ..................................................
EX767180       --> ..................................................
FD958629       --> ..................................................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               1251   -   1301
UN21615        --> TCAGACGACGACATGTTTGAATATCAACAGATTTTAGGCTTTGCTCAAA-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ..................................................
EY941935       <-- TCAGACGACGACATGTTTGAATATCAACAGATTTTAGGCTTTGCTCAAAG
EW726420       <-- TCAGACGACGACATGTTTGAATATCAACAGATTTTAGGCTTTGCTCAAA-
FD531323       --> ..................................................
EV573395       --> ..................................................
EY937411       --> ..................................................
FD976808       --> ..................................................
FD977265       --> ..................................................
EX767180       --> ..................................................
FD958629       --> ..................................................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               1301   -   1351
UN21615        --> ---ATCTTCTGGAGAGAATGCAGCAGAATAGATCCGAGCTTTTCTTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ..................................................
EY941935       <-- GTAATCTTCTGGAGAGAATGCAGCAGAATAGATCCGAGCTTTTCTTCTTC
EW726420       <-- ---ATCTTCTGGAGAGAATGCAGCAGAATAGATCCGAGCTTTTCTCCTTC
FD531323       --> ..................................................
EV573395       --> ..................................................
EY937411       --> ..................................................
FD976808       --> ..................................................
FD977265       --> ..................................................
EX767180       --> ..................................................
FD958629       --> ..................................................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               1351   -   1401
UN21615        --> CTTTTTTTTCCAGAGGGATGGATAAAGACGAACGAACCGTGTGTAATGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ..................................................
EY941935       <-- CTTTTTTTTCCAGAGGGATG-AAAAAGACGAACGAACCGTGTGTAATGTA
EW726420       <-- CTTTTTTTTCCAGAGGGATGGATAAAGACGAACGAACCGTcc........
FD531323       --> ..................................................
EV573395       --> ..................................................
EY937411       --> ..................................................
FD976808       --> ..................................................
FD977265       --> ..................................................
EX767180       --> ..................................................
FD958629       --> ..................................................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               1401   -   1451
UN21615        --> TGTATTGGCTTTGTGGATTTATCACGTTTCTGTAGAATTGGTCTCGCGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ..................................................
EY941935       <-- TGTATTGGCTTTGTGGATTTATCACGTTTCTGTAGAATTGGTCTCGCGCA
EW726420       <-- ..................................................
FD531323       --> ..................................................
EV573395       --> ..................................................
EY937411       --> ..................................................
FD976808       --> ..................................................
FD977265       --> ..................................................
EX767180       --> ..................................................
FD958629       --> ..................................................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               1451   -   1501
UN21615        --> TTTGCTGCTGTGTCCCTCCCGCAATTCCCTCTTCGATCGTCCCGTTTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY938019       <-- ..................................................
EY941935       <-- TTTGCTGCTGTGTCCCTCCCGCAATTCCCTCTTCGATCGTCCCGTTTCGT
EW726420       <-- ..................................................
FD531323       --> ..................................................
EV573395       --> ..................................................
EY937411       --> ..................................................
FD976808       --> ..................................................
FD977265       --> ..................................................
EX767180       --> ..................................................
FD958629       --> ..................................................
FD547423       --> ..................................................
EV573305       --> ..................................................
EX769852       --> ..................................................

               1501   -   1551
UN21615        --> CC
                   ~~
EY938019       <-- ..
EY941935       <-- CC
EW726420       <-- ..
FD531323       --> ..
EV573395       --> ..
EY937411       --> ..
FD976808       --> ..
FD977265       --> ..
EX767180       --> ..
FD958629       --> ..
FD547423       --> ..
EV573305       --> ..
EX769852       --> ..