1      -     51
UN21630        --> CGAAAAAAACCATATTCAATATCTTGCAGTCTCAATCGCATAGAAATTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- ..................................tttGCATAGAAATTTA
FD973823       <-- ..................................................
FD557250       <-- ..................................................
FD978967       <-- ..................................................
EX763688       <-- ..................................................
FD937896       <-- ..................................................
FD564615       <-- ..................................................
FD982295       <-- ..................................................
EX762069       <-- ..................................................
FD981145       <-- ..................................................
FD941706       <-- ..................................................
EY930228       <-- ..................................................
EX766425       --> CGAAAAAAACCATATTCAATATCTTGCAGTCTCAATCGCATAGAAATTTA
FD568058       --> ............TATTCAATATCTTGCAGTCTCAATCGCATAAAAATTTA
FD975114       --> ............TATTCAATATCTTGCAGTCTCAATCGCATAGAAATTTA
FD976923       --> ............TATTCAATATCTTGCAGTCTCAATCGCATAGAAATTTA
FD934419       --> ................CAATATCTTGCAGTCTCAATCGCATAGAAATTTA
EY926474       --> .........................GCAGTCTCAATCGCATAGAAATTTA
FD553633       --> .....................................GCATAGAAATTTA
FD969439       --> ..................................................
FD944286       --> ..................................................
FD937288       --> ..................................................

               51     -    101
UN21630        --> TCATCAAAATCAAGTATAGCAAAGGTCCCCGCTAGCTAAAACCCTCCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- TCATCAAAATCAAGTATAGCAAAGGTCCC-GCTAGCTAAAACCCTCCAGA  Raphanus raphanistrum subsp. landra
FD973823       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557250       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD978967       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX763688       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937896       <-- ..................................................  Raphanus sativus var. oleiformis
FD564615       <-- ..................................................  Raphanus sativus var. oleiformis
FD982295       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX762069       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981145       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD941706       <-- ..................................................  Raphanus sativus var. oleiformis
EY930228       <-- ..................................................  Raphanus sativus var. oleiformis
EX766425       --> TCATCAAAATCAAGTATAGCATAGGTCCC-GGTAGCTAAAACCCTCCAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568058       --> TCATCAAAATCAAGTATAGCAAAGGTCCCCGCTAGCTAAAACCCTCCAAA  Raphanus sativus var. oleiformis
FD975114       --> TCATCAAAATCAAGTATAGCAAAGGTCCCCGCTAGCTAAAACCCTCCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976923       --> TCATCAAAATCAAGTATAGCAAAGGTCCCCGCTAGCTAAAACCCTCCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD934419       --> TCATCAAAATCAAGTATAGCAAAGGTCCCCGCTAGCTAAAACCCTCCAAA  Raphanus sativus var. oleiformis
EY926474       --> TCATCAAAATCAAGTATAGCAAAGGTCCCCGCTAGCTAAAACCCTCCAAA  Raphanus sativus var. oleiformis
FD553633       --> TCATCAAAATCAAGTATAGCAAAGGTCCC-GCTAGCTAAAACCCTCCAGA  Raphanus raphanistrum subsp. landra
FD969439       --> ...........AAGTATAGCATAGGTCCC-GGTAGCTAAAACCCTCCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944286       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD937288       --> ..................................................  Raphanus sativus var. oleiformis

               101    -    151
UN21630        --> GACAAAAGACTAACTGAACTTTTT-GCTTTGTTTATTTTCAAAGCTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- GACAAAAGACTAACTGAACCTTTT-GATTTGTTTATTTTCAAAGCTTGAT
FD973823       <-- ..................................................
FD557250       <-- ..................................................
FD978967       <-- ..................................................
EX763688       <-- ..................................................
FD937896       <-- ..................................................
FD564615       <-- ..................................................
FD982295       <-- ..................................................
EX762069       <-- ..................................................
FD981145       <-- ..................................................
FD941706       <-- ..................................................
EY930228       <-- ..................................................
EX766425       --> GACAAAAGACTAACTGAACTTTTTTGCTTTGTTTATTTTCAAAGCTTGAT
FD568058       --> GACAAAAGACTAACTGAACTTTTT-GCTTTGTTTATTTTCAAAGCTTGAT
FD975114       --> GACAAAAGACTAACTGAACTTTTT-GCTTTGTTTATTTTCAAAGCTTGAT
FD976923       --> GACAAAAGACTAATTGAACTTTTT-GCTTTGTTTATTTTCAAAGCTTGAT
FD934419       --> GACAAAAGACTAACTGAACTTTTT-GCTTTGTTTATTTTCAAAGCTTGAT
EY926474       --> GACAAAAGACTAACTGAACTTTTT-GCTTTGTTTATTTTCAAAGCTTGAT
FD553633       --> GACAAAAGACTAACTGAACCTTTT-GATTTGTTTATTTTCAAAGCTTGAT
FD969439       --> GACAAAAGACTAACTGAACTTTTT-GCTTTGTTTATTTTCAAAGCTTGAT
FD944286       --> ...........agCTGAACTTTTT-GCTTTGTTTATTTTCAAAGCTTGAT
FD937288       --> ..................................................

               151    -    201
UN21630        --> AAGTCCTGTGT-CAAGCTCATCATGCATCAATTAATGTTTGCCTTTGGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- AGATCCTGTGT-CAAGCTCATCATGCATCAATTAATGTTTGCCTAGGGGC  Raphanus raphanistrum subsp. landra
FD973823       <-- .............................................aGGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557250       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD978967       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX763688       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937896       <-- ..................................................  Raphanus sativus var. oleiformis
FD564615       <-- ..................................................  Raphanus sativus var. oleiformis
FD982295       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX762069       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981145       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD941706       <-- ..................................................  Raphanus sativus var. oleiformis
EY930228       <-- ..................................................  Raphanus sativus var. oleiformis
EX766425       --> AGATCCTGTGTTCAAGCTCATCCTGCATCAATTAATGTTTGCCT-AGGGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568058       --> AAGTCCTGTGT-CAAGCTCATCATGCATCAATTAATGTTTGCCTTTGGGC  Raphanus sativus var. oleiformis
FD975114       --> AAGTCCTGTGT-CAAGCTCATCATGCATCAATTAATGTTTGCCTTTGGGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976923       --> AAGTCCTGTGT-CAAGCTCATCATGCATCAATTAATGTTTGCCTTTGGGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD934419       --> AAGTCCTGTGT-CAAGCTCATCATGCATCAATTAATGTTTGCCTTTGGGC  Raphanus sativus var. oleiformis
EY926474       --> AAGTCCTGTGT-CAAGCTCATCATGCATCAATTAATGTTTGCCTTTGGGC  Raphanus sativus var. oleiformis
FD553633       --> AGATCCTGTGT-CAAGCTCATCATGCATCAATTAATGTTTGCCTAGGGGC  Raphanus raphanistrum subsp. landra
FD969439       --> AGGTCCTGTGTTCAAGCTCATCCTGCATCAATTAATGTTTGCCTTAGGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944286       --> AAGTCCTGTGT-CAAGCTCATCATGCATCAATTAATGTTTGCCTTTGGGC  Raphanus sativus cv Early Scarlet Globe
FD937288       --> ..................................................  Raphanus sativus var. oleiformis

               201    -    251
UN21630        --> CACTTTATTACATGAAATGAAACCTCGTCAAGAGTAGAAACTAAGGAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- CGCTTTATTACATGAAATGAAACCTCGTCAAGAGTAGAAACTAAGGAACT
FD973823       <-- CACTTTATTACATGAAATGAAACCTCGTCAAGAGTAGAA-CTAAGGAACT
FD557250       <-- ............................................GGAACT
FD978967       <-- ..................................................
EX763688       <-- ..................................................
FD937896       <-- ..................................................
FD564615       <-- ..................................................
FD982295       <-- ..................................................
EX762069       <-- ..................................................
FD981145       <-- ..................................................
FD941706       <-- ..................................................
EY930228       <-- ..................................................
EX766425       --> CACTTTATTACATGAATTGAAACCTCGTCAAGAGTAGAAAC--GGGAACT
FD568058       --> CACTTTATTACATGAAATGAAACCTCGTCAAGAGTAAAAACTAAGGAACT
FD975114       --> CACTTTATTACATGAAATGAAACCTCGTCAAGAGTAGAAACTAAGGAACT
FD976923       --> CACTTTATTACATGAAATGAAACCTCGTCAAGAGTAGAAACTAAGGAACT
FD934419       --> CACTTTATTACATGAAACGAAACCTCGTCAAGAGTAGAAACTAAGGAACT
EY926474       --> CACTTTATTACATGAAATGAAACCTCGTCAAGAGTAGAAACTAAGGAACT
FD553633       --> CGCTTTATTACATGAAATGAAACCTCGTCAAGAGTAGAAACTAAGGAACT
FD969439       --> CACTTTATTACATGAAATGAAACCTCGTCAAGAGTAGAA-CTAAGGAACT
FD944286       --> CACTTTATTACATGAAATGAAACCTCGTCAAGAGTAAAAACTAAGGAACT
FD937288       --> .......TTACATGAAATGAAACCTCGTCAAGAGTAGAAACTAAGGAACT

               251    -    301
UN21630        --> TCGATTCATAAGCCCTCTCAGAATTTGAAAACCATTTGCTCTGTGAATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- TTGATTCATAAGCCCTCTCAGAATTTGAAAACCATTTGCTCTGTGAATCC  Raphanus raphanistrum subsp. landra
FD973823       <-- TTGATTCATAAGCC-TCTCAGAATTTGAAAACCATTTGCTCTGTGAATCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557250       <-- TTGATTCATAAGCCCTCTCAGAATTTGAAAACCATTTGCTCTGTGAATCC  Raphanus raphanistrum subsp. landra
FD978967       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX763688       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937896       <-- ..................................................  Raphanus sativus var. oleiformis
FD564615       <-- ..................................................  Raphanus sativus var. oleiformis
FD982295       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX762069       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981145       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD941706       <-- ..................................................  Raphanus sativus var. oleiformis
EY930228       <-- ..................................................  Raphanus sativus var. oleiformis
EX766425       --> TCGATTCATAAGCCCTCTCAGAATTTGAAAACCATTTGCTCTGTGAATCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568058       --> TCGATTCATAAGCCCTCTCAAAATTTGAAAACCATTTGCTCTGTGAATCC  Raphanus sativus var. oleiformis
FD975114       --> TCGATTCATAAGCCCTCTCAGAATTTGAAAACCATTTGCTCTGTGAATCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976923       --> TCGATTCATAAGCCCTCTCAGAATTTGAAAACCATTTGCTCTGTGAATCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD934419       --> TCGATTCATAAGCCCTCTCAAAATTTGAAAACCATTTGCTCTGTGAATCC  Raphanus sativus var. oleiformis
EY926474       --> TCGATTCATAAGCCCTCTCAGAATTTGAAAACCATTTGCTCTGTGAATCC  Raphanus sativus var. oleiformis
FD553633       --> TTGATTCATAAGCCCTCTCAGAATTTGAAAACCATTTGCTCTGTGAATCC  Raphanus raphanistrum subsp. landra
FD969439       --> TTGATTCATAAGCC-TCTCAGAATTTGAAAACCATTTGCTCTGTGAATCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944286       --> TCGATTCATAAGCCCTCTCAGAATTTGAAAACCATTTGCTCTGTGAATCC  Raphanus sativus cv Early Scarlet Globe
FD937288       --> TCTATTCATAAGCCCTCTCAGAATTTGAAAACCATTTGCTCTGTGAATCC  Raphanus sativus var. oleiformis

               301    -    351
UN21630        --> GAGTTCTTTGAGTATCCCCTTTACCTCTCCTTGTGACCAGTCTGGAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- GAGTTCCTTGAGTATCCCCTTTACCTCTCCTTGTGACCAGTCTGGAGCTT  Raphanus raphanistrum subsp. landra
FD973823       <-- GAGTTCCTTGAGTATCCCCTTTACCTCTCCTTGTGACCAGTCTGGAGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557250       <-- GAGTTCCTTGAGTATCCCCTTTACCTCTCCTTGTGACCAGTCTGGAGCTT  Raphanus raphanistrum subsp. landra
FD978967       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX763688       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937896       <-- ..................................................  Raphanus sativus var. oleiformis
FD564615       <-- ..................................................  Raphanus sativus var. oleiformis
FD982295       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX762069       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981145       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD941706       <-- ..................................................  Raphanus sativus var. oleiformis
EY930228       <-- ..................................................  Raphanus sativus var. oleiformis
EX766425       --> GAGTTCTTTGAGTATCCCCTTTACCTCTCCTTGTGACCAGTCTGGAGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568058       --> GAGTTCTTTGAGTATCCCCTTTACCTCTCCTTGTGACCAGTCTGGAGCTT  Raphanus sativus var. oleiformis
FD975114       --> GAGTTCTTTGAGTATCCCCTTTACCTCTCCTTGTGACCAGTCTGGAGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976923       --> GAGTTCTTTGAGTATCCCCTTTACCTCTCCTTGTGACCAGTCTGGAGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD934419       --> GAGTTCTTTGAGTATCCCCTTTACCTCTCCTTGTGACCAGTCTGGAGCCT  Raphanus sativus var. oleiformis
EY926474       --> GAGTTCTTTGAGTATCCCCTTTACCTCTCCTTGTGACCAGTCTGGAGCTT  Raphanus sativus var. oleiformis
FD553633       --> GAGTTCCTTGAGTATCCCCTTTACCTCTCCTTGTGACCAGTCTGGAGCTT  Raphanus raphanistrum subsp. landra
FD969439       --> GAGTTCCTTGAGTATCCCCTTTACCTCTCCTTGTGACCAGTCTGGAGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944286       --> GAGTTCTTTGAGTATCCCCTTTACCTCTCCTTGTGACAAGTCTGGAGCTT  Raphanus sativus cv Early Scarlet Globe
FD937288       --> GAGTTCTTTGAGTATCCCCTTTACCTCTCCTTGTGACCAGTCTGGAGCTT  Raphanus sativus var. oleiformis

               351    -    401
UN21630        --> TGCCTCCGGATACATGTTCCATCATCCCAGGAGGACCACATACGAGGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- TGCCTCCGGATACATGTTCCATCATCCCAGGAGGACCACATACGAGGATA  Raphanus raphanistrum subsp. landra
FD973823       <-- TGCCTCCGGATACATGTTCCATCATCCCAGGAGGACCACATACGAGGATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557250       <-- TGCCTCCGGATACATGTTCCATCATCCCcc....................  Raphanus raphanistrum subsp. landra
FD978967       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX763688       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937896       <-- ..................................................  Raphanus sativus var. oleiformis
FD564615       <-- ..................................................  Raphanus sativus var. oleiformis
FD982295       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX762069       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981145       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD941706       <-- ..................................................  Raphanus sativus var. oleiformis
EY930228       <-- ..................................................  Raphanus sativus var. oleiformis
EX766425       --> TGCCTCCGGATACATGTTCCATCATCCCAGGAGGACCACATACGAGGATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568058       --> TGCCTCCGGATACATGTTCCATCATCCCAGGAGGACCACATACGAGGACA  Raphanus sativus var. oleiformis
FD975114       --> TGCCTCCGGATACATGTTCCATCATCCCAGGAGGACCACGTACGAGGACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976923       --> TGCCTCCGGATACATGTTCCATCATCCCAGGAGGACCACATACGAGGACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD934419       --> TGCCTCCGGATACATGTTCCATCATCCCAGGAGGACCACGTACGAGGACA  Raphanus sativus var. oleiformis
EY926474       --> TGCCTCCGGATACATGTTCCATCATCCCAGGAGGACCACATACGAGGACA  Raphanus sativus var. oleiformis
FD553633       --> TGCCTCCGGATACATGTTCCATCATCCCAGGAGGACCACATACGAGGATA  Raphanus raphanistrum subsp. landra
FD969439       --> TGCCTCCGGATACATGTTCCATCATCCCAGGAGGACCACATACGAGGATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944286       --> TGCCTCCGGATACATGTTCCATCATCCCAGGAGGACCACATACGAGGATA  Raphanus sativus cv Early Scarlet Globe
FD937288       --> TGCCTCCGGATACATGTTC...............................  Raphanus sativus var. oleiformis

               401    -    451
UN21630        --> AGTGTATCGTCAGCAGGAAGAGGTAAGCCTTTCAGAGCCATGTCCTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- AGTGTGTCGTCAGCAGGAAGAGGTAATCCTTTCAGAGCCATGTCCTTTGA
FD973823       <-- AGTGTATCGTCAGCAGGAAGAGGTAAGCCTTTCAGAGCCATGTCCTTTGA
FD557250       <-- ..................................................
FD978967       <-- ..................................................
EX763688       <-- ..................................................
FD937896       <-- ..................................................
FD564615       <-- ..................................................
FD982295       <-- ..................................................
EX762069       <-- ..................................................
FD981145       <-- ..................................................
FD941706       <-- ..................................................
EY930228       <-- ..................................................
EX766425       --> AGTGTATCGTCAGCTGGAAGAGGTAATCCTTTCAGAGCCATGTCCTTTGA
FD568058       --> AGTGTATCGTCAGCAGGAAAAGGTAAGCCTTTCAAAGCCATGTCCTTTGA
FD975114       --> AGTGTATCGTCAGCAGGAAGAGGTAAGCCTTTCAGAGCCATGTCCTTTGA
FD976923       --> AGTGTATCGTCAGCAGGAAGAGGTAAGCCTTTCAGAGCCATGTCCTTTGA
FD934419       --> AGTGTATCGTCAGCAGGAAGAGGTAAGCCTTTCAGAGCCATGTCCTTTGA
EY926474       --> AGTGTATCGTCAGCAGGAAGAGGTAAGCCTTTCAGAGCCATGTCCTTTGA
FD553633       --> AGTGTGTCGTCAGCAGGAAGAGGTAATCCTTTCAGAGCCATGTCCTTTGA
FD969439       --> AGTGTATCGTCAGCAGGAAGAGGTAAGCCTTTCAGAGCCATGTCCTTTGA
FD944286       --> AGTGTATCGTCAGCAGGAAGAGGTAAGCCTTTCAGAGCCATGTCCTTTGA
FD937288       --> ..................................................

               451    -    501
UN21630        --> AACGTAACCTACTCCTCCTTTCCAATTTTTAGTAGGATTGTCAACAGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- AACGTAACCTACTCCTCCTTTCCAATTTTTAGTAGGATTGTCGACAGTAT  Raphanus raphanistrum subsp. landra
FD973823       <-- AACGTAACCTACTCCTCCTTTCCAATTTTTAGTAGGATTGTCAACCGTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557250       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD978967       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX763688       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937896       <-- ..................................................  Raphanus sativus var. oleiformis
FD564615       <-- ..................................................  Raphanus sativus var. oleiformis
FD982295       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX762069       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981145       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD941706       <-- ..................................................  Raphanus sativus var. oleiformis
EY930228       <-- ..................................................  Raphanus sativus var. oleiformis
EX766425       --> AACGTGACCTACTCCTCCTTTCCAATTTTTAGTAGGATTGTCAACAGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568058       --> AACGTAACCTACTCCTCCTTTCCAATTTTTAGTAGGATTGTCAACAGTGT  Raphanus sativus var. oleiformis
FD975114       --> AACGTAACCTACTCCTCCTTTCCAATTTTTAGTAGGATTGTCAACAGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976923       --> AACGTAACCTACTCCTCCTTTCCAATTTTTAGTAGGATTGTCAACAGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD934419       --> AACGTAACCTACTCCTCCTTTCCAATTTTTAGTAGGATTGTCAACAGTGT  Raphanus sativus var. oleiformis
EY926474       --> AACGTAACCTACTCCTCCTTTCCAATTTTTAGTAGGATTGTCAACAGTGT  Raphanus sativus var. oleiformis
FD553633       --> AACGTAACCTACTCCTCCTTTCCAATTTTTAGTAGGATTGTCGACAGTAT  Raphanus raphanistrum subsp. landra
FD969439       --> AACGTAACCTACTCCTCCTTTCCAATTTTTAGTAGGATTGTCAACCGTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944286       --> AACGTAACCTACTCCTCCTTTCCAATTTTTAGTAGGATTGTCAACAGTGT  Raphanus sativus cv Early Scarlet Globe
FD937288       --> ..................................................  Raphanus sativus var. oleiformis

               501    -    551
UN21630        --> AGAATACCTTCAGATTTGGGTGGTTTGCCTGAAGAGCATCCAGCTTTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- AGAATACCTTCAGATTTGGGTGGTTTGCCTGAAGAGCATCCAGCTTTTGC
FD973823       <-- AGAATACCTTCAGATTTGGGTGGTTTGCCTGAAGAGCATCCAGCTTTTGC
FD557250       <-- ..................................................
FD978967       <-- ...............................AAGAGCATCCAGCTTTTGC
EX763688       <-- ................................AGAGCATCCAGCTTT-GC
FD937896       <-- ................................AGAGCATCCAGCTTT-GC
FD564615       <-- ..................................................
FD982295       <-- ..................................................
EX762069       <-- ..................................................
FD981145       <-- ..................................................
FD941706       <-- ..................................................
EY930228       <-- ..................................................
EX766425       --> AGAATACCTTCAGATTTGGGTGGTTTGCCTGAAGAGCATCCAGCTTTTGC
FD568058       --> AAAATACCTTCAAATTTGGGTGGTTTGCCTGAAAAGCATCCAGCTTTTGC
FD975114       --> AGAATACCTTCAGATTTGGGTGGTTTGCCTGAAGAGCATCCAGCTTTTGC
FD976923       --> AGAATACCTTCAGATTTGGGTGGTTTGCCTGAAGAGCATCCAGCTTTTGC
FD934419       --> AGAATACCTTCAGATTTGGGTGGTTTGCCTGAAGAGCATCCAGCTTTTGC
EY926474       --> AGAATACCTTCAGATTTGGGTGGTTTGCCTGAAGAGCATCCAGCTTTTGC
FD553633       --> AGAATACCTTCAGATTTGGGTGGTTTGCCTGAAGAGCATCCAGCTTTTGC
FD969439       --> AGAATACCTTCAGATTTGGGTGGTTTGCCTGAAGAGCATCCAGCTTTTGC
FD944286       --> AGAATACCTTCAGATTTGGGTGGTTTGCCTGA..................
FD937288       --> ..................................................

               551    -    601
UN21630        --> TTGAGAAGTATATCATCCGGAGAAACATTGGCATAAAGTAATGTTATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- TTGAGAAGTATATCATCCGGAGAAACATTGGCATAAAGc...........
FD973823       <-- TTGAGAAGTATATCATCCGGAGAAACATTGGCATAAAGTAATGTTACCTT
FD557250       <-- ..................................................
FD978967       <-- TTGAGAAGTATATCATCCGGAGAAACATTGGCATAAAGTAATGTTATCTT
EX763688       <-- -TGAGAAGTATATCATCCGGAGAAACATTGGCATAAAGTAATGTTATCTT
FD937896       <-- -TGAGAAGTATATCATCCGGAGAAACATTGGCATAAAGTAATGT-ATCTT
FD564615       <-- ..........................caTGGCATAAAGTAATGT-ATCTT
FD982295       <-- ..................................................
EX762069       <-- ..................................................
FD981145       <-- ..................................................
FD941706       <-- ..................................................
EY930228       <-- ..................................................
EX766425       --> TTGAGAAGTATATCATCCGGAGAAACATTGGCATAAAGTAATGTTATCTT
FD568058       --> TTGAGAAGTATATCATCCGGAGAAACATTGGCATAAAGTAATGTTATCTT
FD975114       --> TTGAGAAGTATATCATCCGGAGAAACATTGGCATAAAGTAATGTTATCTT
FD976923       --> TTGAGAAGTATATCATCCGGGGAAACATTGGCATAAAGTAATGTTATCTT
FD934419       --> TTGAGAAGTATATCATCCGGAGAAACATTGGCATAAAGTAATGTTATCTT
EY926474       --> TTGAGAAGTATATCATCCGGAGAAACATTGGCATAAAGTAATGTTATCTT
FD553633       --> TTGAGAAGTATATCATCCGGAGAAACATTGGCATAAAGc...........
FD969439       --> TTGAGAAGTATATCATCCGGAGAAACATTGGCATAAAGTAATGTTACCTT
FD944286       --> ..................................................
FD937288       --> ..................................................

               601    -    651
UN21630        --> CGTGTTGTCCTCAGGATTCTTCACAATGGTATCAATCACCTGAAGCATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- ..................................................
FD973823       <-- CGTGTTGTCCTCAGGATTCTTCACAATGGTATCAATCACCTGAAGCATTG
FD557250       <-- ..................................................
FD978967       <-- CGTGTTGTCCTCAGGATTCTTTACAATGGTATCAATCACGTGAAGCATTG
EX763688       <-- CGTGT-GT-CTCAGGATTCTTCACAATGGTATCAATCAC-TGAAGCATTG
FD937896       <-- CGTGTTGTCCTCAGGATTCTTCACAATGGTATCAATCAC-TGAAGCATTG
FD564615       <-- CGTGT-GTCCTCAGGATTCTTCACAATGGTATCAATCAC-TGAAGCATTG
FD982295       <-- .............GGATTCTTCACAATGGTATCAATCAC-TGAAGCATTG
EX762069       <-- ......................ACAATGGTATCAATCAC-TGAAGCATTG
FD981145       <-- ......................ACAATGGTATCAATCAC-TGAAGCATTG
FD941706       <-- ...........................................AGCATTG
EY930228       <-- ..................................................
EX766425       --> CGTGTTGTCCTCAGGATTCTTCACAATGGTATCAATCACCTGAAGCATTG
FD568058       --> CGTGTTGTCCTCAGGATTCTTCACAATGGTATCAATCACCTGAAGCATTG
FD975114       --> CGTGTTGTCCTCAGGATTCTTTACAATGGTATCAATCACCTGAAGCATTG
FD976923       --> CGTGTTGTCCTCAGGATTCTTCACAATGGTATCAATCACCTGAAGCATTG
FD934419       --> CGTGTTGTCCTCAGGATTCTTCACAATGGTATCAATCACCTGAAGCATTG
EY926474       --> CGTGTTGTCCTCAGGATTCTTCACAATGGTATCAATCACCTGAAGCATTG
FD553633       --> ..................................................
FD969439       --> CGTGTTGTCCTCAGGAT.................................
FD944286       --> ..................................................
FD937288       --> ..................................................

               651    -    701
UN21630        --> GAGTAATCCCACTTCCACCAGCAATCATGCCAATATGTTTCTTCATGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- ..................................................
FD973823       <-- GAGTAATCCCACTTCCACCAGCAATCATGCCAATATGTTTCTTCATGTTA
FD557250       <-- ..................................................
FD978967       <-- GAGTAATCCCACTTCCACCAGCAATCATACCAATATGTTTCTTCATGTTA
EX763688       <-- GAGTAATCCAACTTCCACCAGCAATCATACCAATATGTTTCTTCATGTTA
FD937896       <-- GAGTAATCCCACTTCCACCAGCAATCATGCCAATATGTTTCTTCATGTTA
FD564615       <-- GAGTAATCCCACTTCCACCAGCAATCATGCCAATATGTTTCTTCATGTTA
FD982295       <-- GAGTAATCCCACTTCCACCAGCAATCATGCCAATATGTTTCTTCATGTTA
EX762069       <-- GAGTAATCCCACTTCCACCAGCAATCATGCCAATATGTTTCTTCATGTTA
FD981145       <-- GAGTAATCCCACTTCCACCAGCAATCATGCCAATATGTTTCTTCATGTTA
FD941706       <-- GAGTAATCCCACTTCCACCAGCAATCATGCCAATATGTTTCTTCATGTTA
EY930228       <-- ..................................................
EX766425       --> GAGTAATCCCACTTCCACCAGCAATCATGCCAATATGTTTCTTCATGTTA
FD568058       --> GAGTAATCCCACTTCCACCAGCAATCATGCCAATATGTTTCTTCATGTTA
FD975114       --> GAGTAATCCCACTTCCACCAGCAATCATACCAATATGTTTCTTCATGTTA
FD976923       --> GAGTAATCCCACTTCCACCAGCAATCATGCCAATATGTTTCTTCATGTTA
FD934419       --> GAGTAATCCCACTTCCACCAGCAATCATGCCAATATGTTTCTTCATGTTA
EY926474       --> GAGTAATCCCACTTCCACCAGCAATCATGCCAATATGTTTCTTCATGTTA
FD553633       --> ..................................................
FD969439       --> ..................................................
FD944286       --> ..................................................
FD937288       --> ..................................................

               701    -    751
UN21630        --> GGCGAATATTTGAATTTTTCAATAGGTCCTTTCACTTCCAACACATCCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- ..................................................
FD973823       <-- GGCGAATATTTGAATTTTTCAATAGGTCCTTTCACTTCCAACACATCCCC
FD557250       <-- ..................................................
FD978967       <-- GGCGAATATTTGAATTTTTCAATAGGTCCTTTCACTTCCAACACATCCCC
EX763688       <-- GGCGAATATTTGAATTTTTCAATAGGTCCTTTCACTTCCAACACATCCCC
FD937896       <-- GGCGAATATTTGAATTTTTCAATAGGTCCTTTCACTTCCAACACATCCCC
FD564615       <-- GGCGAATATTTGAATTTTTCAATAGGTCCTTTCACTTCCAACACATCCCC
FD982295       <-- GGCGAATATTTGAATTTTTCAATAGGTCCTTTCACTTCCAACACATCCCC
EX762069       <-- GGCGAATATTTGAATTTTTCAATAGGTCCTTTCACTTCCAACACATCCCC
FD981145       <-- GGCGAATATTTGAATTTTTCAATAGGTCCTTTCACTTCCAACACATCCCC
FD941706       <-- GGCGAATATTTGAATTTTTCAATAGGTCCTTTCACTTCCAACACATCCCC
EY930228       <-- ..............TTTTTCAATAGGTCCTTTCACTTCCAACACATCCCC
EX766425       --> GGCGAATATTTGAATTTTTCAATAGGTCCTTTCACTTCCAACACATCCCC
FD568058       --> GGCGAATATTTGAATTTTTCAATAGGTCCTTTCACTTCCAACACATCCCC
FD975114       --> GGCGAATATTTGAATTTTTCAATAGGTCCTTTCACTTCCAACACATCCCC
FD976923       --> GGCGAATATTTGAATTTTTCAATAGGTCCTTT..................
FD934419       --> GGCGAATATTTGAATTTTTCAATAGGTCCTTTCACTTCCAACACATCCCC
EY926474       --> GGCGAATATTTGAATTTT................................
FD553633       --> ..................................................
FD969439       --> ..................................................
FD944286       --> ..................................................
FD937288       --> ..................................................

               751    -    801
UN21630        --> CGGTTTTAAGCTGGCAAAATGCTGACTCATTTTTCCATCTGGATATACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- ..................................................
FD973823       <-- CGGCTTTAAGCTGGCAAAATGCTGACTCATTTTTCCATCTGGATATACCT
FD557250       <-- ..................................................
FD978967       <-- CGGTTTTAAGTTGGCAAAATGCTGACTCATTTTTCCATCTGGATATACCT
EX763688       <-- CGGTTTTAAGCTGGCAAAATGCTGACTCATTTTTCCATCTGGATATACCT
FD937896       <-- CGGTTTTAAGCTGGCAAAATGCTGACTCATTTTTCCATCTGGATATACCT
FD564615       <-- CGGTTTTAAGCTGGCAAAATGCTGACTCATTTTTCCATCTGGATATACCT
FD982295       <-- CGGTTTTAAGCTGGCAAAATGCTGACTCATTTTTCCATCTGGATATACCT
EX762069       <-- CGGTTTTAAGCTGGCAAAATGCTGACTCATTTTTCCATCTGGATATACCT
FD981145       <-- CGGTTTTAAGCTGGCAAAATGCTGACTCATTTTTCCATCTGGATATACCT
FD941706       <-- CGGTTTTAAGCTGGCAAAATGCTGACTCATTTTTCCATCTGGATATACCT
EY930228       <-- CGGTTTTAAGCTGGCAAAATGCTGACTCATTTTTCCATCTGGATATACCT
EX766425       --> ..................................................
FD568058       --> CGGTTTTA..........................................
FD975114       --> CGGTTTTAAGTTGGCAAA-TGCTGACTCA.....................
FD976923       --> ..................................................
FD934419       --> CGGTTTTAAGCTGG....................................
EY926474       --> ..................................................
FD553633       --> ..................................................
FD969439       --> ..................................................
FD944286       --> ..................................................
FD937288       --> ..................................................

               801    -    851
UN21630        --> TAATCAGTAAATCGAAATAGCCCTTAGCCTCTGGGTCTGAGATAGGAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- ..................................................
FD973823       <-- TAATCAGTAAATCAAAATAGCCCTTAGCCTCTGGGTCTGAGATcc.....
FD557250       <-- ..................................................
FD978967       <-- TAATCAGTAAATCGAAATAGCCCTTAGCCTCTGGGTCTGAGATAGGAGTG
EX763688       <-- TAATCAGTAAATCGAAATAGCCCTTAGCCTCTGGGTCTGAGATAGGAGTG
FD937896       <-- TAATCAGTAAATCGAAATAGCCCTTAGCCTCTGGGTCTGAGATAGGAGTG
FD564615       <-- TAATCAGTAAATCGAAATAGCCCTTAGCCTCTGGGTCTGAGATAGGAGTG
FD982295       <-- TAATCAGTAAATCGAAATAGCCCTTAGCCTCTGGGTCTGAGATAGGAGTG
EX762069       <-- TAATCAGTAAATCGAAATAGCCCTTAGCCTCTGGGTCTGAGATAGGAGTG
FD981145       <-- TAATCAGTAAATCGAAATAGCCCTTAGCCTCTGGGTCTGAGATAGGAGTG
FD941706       <-- TAATCAGTAAATCGAAATAGCCCTTAGCCTCTGGGTCTGAGATAGGAGTG
EY930228       <-- TAATCAGTAAATCGAAATAGCCCTTAGCCTCTGGGTCTGAGATAGGAGTG
EX766425       --> ..................................................
FD568058       --> ..................................................
FD975114       --> ..................................................
FD976923       --> ..................................................
FD934419       --> ..................................................
EY926474       --> ..................................................
FD553633       --> ..................................................
FD969439       --> ..................................................
FD944286       --> ..................................................
FD937288       --> ..................................................

               851    -    901
UN21630        --> TAAGGTCTAACGACATATTTCGTTTTCCCTTCAGCATTATAGCCCAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- ..................................................
FD973823       <-- ..................................................
FD557250       <-- ..................................................
FD978967       <-- TAAGGTCTAACGACATATTTCGTTTTCCCTTCAGCATTATAGCCCAAAGG
EX763688       <-- TAAGGTCTAACGACATATTTCGTTTTCCCTTCAGCATTATAGCCTAAAGG
FD937896       <-- TAAGGTCTAACGACATATTTCGTTTTCCCTTCAGCATTATAGCCCAAAGG
FD564615       <-- TAAGGTCTAACGACATATTTCGTTTTCCCTTCAGCATTATAGCCCAAAGG
FD982295       <-- TAAGGTCTAACGACATATTTCGTTTTCCCTTCAGCATTATAGCCCAAAGG
EX762069       <-- TAAGGTCTAACGACATACTTCGTTTTCCCTTCAGCATTATAGCCTAAAGG
FD981145       <-- TAAGGTCTAACGACATATTTCGTTTTCCCTTCAGCATTATAGCCCAAAGG
FD941706       <-- TAAGGTCTAACGACATATTTCGTTTTCCCTTCAGCATTATAGCCCAAAGG
EY930228       <-- TAAGGTCTAACGACATATTTCGTTTTCCCTTCAGCATTATAGCCCAAAGG
EX766425       --> ..................................................
FD568058       --> ..................................................
FD975114       --> ..................................................
FD976923       --> ..................................................
FD934419       --> ..................................................
EY926474       --> ..................................................
FD553633       --> ..................................................
FD969439       --> ..................................................
FD944286       --> ..................................................
FD937288       --> ..................................................

               901    -    951
UN21630        --> AGCCCTTGTCAGGAGACAAGAAGCAACATGAAGACCCAAGTTGGCTGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- ..................................................
FD973823       <-- ..................................................
FD557250       <-- ..................................................
FD978967       <-- AGCCCTTGTCAGGAGACAAGAAGCAACATGAAGACCCAAGTTGGCTGAGG
EX763688       <-- AGCCCTTGTCAGGAGACAAGAAGCAACATGAAGACCCAAGTTGGCTGAGG
FD937896       <-- AGCCCTTGTCAGGAGACAAGAAGCAACATGAAGACCCAAGTTGGCTGAGG
FD564615       <-- AGCCCTTGTCAGGAGACAAGAAGCAACATGAAGACCCAAGTTGGCTGAGG
FD982295       <-- AGCCCTTGTCAGGAGACAAGAAGCAACATGAAGACCCAAGTTGGCTGAGG
EX762069       <-- AGCCCTTGTCAGGAGACAAGAAGCAACATGAAGACCCAAGTTGGCTGAGG
FD981145       <-- AGCCCTTGCCAGGAGACAAGAAGCAACATGAAGACCCAAGTTGGCTGAGG
FD941706       <-- AGCCCTTGTCAGGAGACAAGAAGCAACATGAAGACCCAAGTTGGCTGAGG
EY930228       <-- AGCCCTTGTCAGGAGACAAGAAGCAACATGAAGACCCAAGTTGGCTGAGG
EX766425       --> ..................................................
FD568058       --> ..................................................
FD975114       --> ..................................................
FD976923       --> ..................................................
FD934419       --> ..................................................
EY926474       --> ..................................................
FD553633       --> ..................................................
FD969439       --> ..................................................
FD944286       --> ..................................................
FD937288       --> ..................................................

               951    -   1001
UN21630        --> GGTCAAATGAGAACCTGAACAACTTGGTGTTGTGGCTAACTGTAGCAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- ..................................................
FD973823       <-- ..................................................
FD557250       <-- ..................................................
FD978967       <-- GGTCAAATGAGAACCTGAACAACTTGGTGTTGTGGCTAACTGTAGCAGTG
EX763688       <-- GGTCAAATGAGGACCTGAACAACTTGGTGTTGTGGCTAACAGTAGCAGTG
FD937896       <-- GGTCAAATGAGAACCTGAACAACTTGGTGTTGTGGCTAACTGTAGCAGTG
FD564615       <-- GGTCAAATGAGA-CCTGAACAACTTGGTGTTGTGGCTAACTGTAGCAGTG
FD982295       <-- GGTCAAATGAGAACCTGAACAACTTGGTGTTGTGGCTAACTGTAGCAGTG
EX762069       <-- GGTCAAATGAGAACCTGAACAACTTGGTGTTGTGGCTAACAGTAGCAGTG
FD981145       <-- GGTCAAATGAGAACCTGAACAACTTGGTGTTGTGGCTAACTGTAGCAGTG
FD941706       <-- GGTCAAATGAGAACCTGAACAACTTGGTGTTGTGGCTAACTGTAGCAGTG
EY930228       <-- GGTCAAATGAGAACCTGAACAACTTGGTGTTGTGGCTAACTGTAGCAGTG
EX766425       --> ..................................................
FD568058       --> ..................................................
FD975114       --> ..................................................
FD976923       --> ..................................................
FD934419       --> ..................................................
EY926474       --> ..................................................
FD553633       --> ..................................................
FD969439       --> ..................................................
FD944286       --> ..................................................
FD937288       --> ..................................................

               1001   -   1051
UN21630        --> TCTTGGAGCTTGAACTCGAGCCATTTATCAGGGTTTAGAGCTGTTTTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- ..................................................
FD973823       <-- ..................................................
FD557250       <-- ..................................................
FD978967       <-- TCTTGGAGCTTGAACTCGAGCCATTTATCAGGGTTTAGAGCTGTTTTGGG
EX763688       <-- TCTTGAAGCTTGAACTCGAGCCATTTATCAGGGTTTAGAGCTGTTTTGGG
FD937896       <-- TCTTGGAGCTTGAACTCGAGCCATTTATCAGGGTTTAGAGCTGTTTTGGG
FD564615       <-- TCTTGGAGCTTGAACTCGAGCCATTTATCAGGGTTTAGAGCTGTTTTGGG
FD982295       <-- TCTTGGAGCTTGAACTCGAGCCATTTATCAGGGTTTAGAGCTGTTTTGGG
EX762069       <-- TCTCGAAGCTTGAACTCGAGCCATTTATCAGGGTTTAGAGCTGTTTTGGG
FD981145       <-- TCTTGGAGCTTGAACTCGAGCCATTTATCAGGGTTTAGAGCTGTTTTGGG
FD941706       <-- TCTTGGAGCTTGAACTCGAGCCATTTATCAGGGTTTAGAGCTGTTTTGGG
EY930228       <-- TCTTGGAGCTTGAACTCGAGCCATTTATCAGGGTTTAGAGCTGTTTTGGG
EX766425       --> ..................................................
FD568058       --> ..................................................
FD975114       --> ..................................................
FD976923       --> ..................................................
FD934419       --> ..................................................
EY926474       --> ..................................................
FD553633       --> ..................................................
FD969439       --> ..................................................
FD944286       --> ..................................................
FD937288       --> ..................................................

               1051   -   1101
UN21630        --> TCCCGTCTCTTCCTTAGCTTGATCCAGATAAGCCAGATTGTTGCCAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- ..................................................
FD973823       <-- ..................................................
FD557250       <-- ..................................................
FD978967       <-- TCCCGTCTCTTCCTTAGCTTGATCCAGATAAGCCAGATTGTTGCCAGAAG
EX763688       <-- TCCCGTCTCTTCCTTAGCTTGATCCAGATAAGCCAGATTGTTTCCGGAAG
FD937896       <-- TCCCGTCTCTTCCTTAGCTTGATCCAGATAAGCCAGATTGTTGCCAGAAG
FD564615       <-- TCCCGTCTCTTCCTTAGCTCGATCCAGATAAGCCAGATTGTTGCCAGAAG
FD982295       <-- TCCCGTCTCTTCCTTAGCTTGATCCAGATAAGCCAGATTGTTGCCAGAAG
EX762069       <-- TCCCGTCTCTTCCTTAGCTTGATCCAGATAAGCCAGATTGTTTCCGGAAG
FD981145       <-- TCCCGTCTCTTCCTTAGCTTGATCCAGATAGGCCAGATTGTTACCAGAAG
FD941706       <-- TCCCGTCTCTTCCTTAGCTTGATCCAGATAAGCCAGATTGTTGCCAGAAG
EY930228       <-- TCCTGTCTCTTCCTTAGCTTGATCCAGATAAGCCAGATTGTTGCCAGAAG
EX766425       --> ..................................................
FD568058       --> ..................................................
FD975114       --> ..................................................
FD976923       --> ..................................................
FD934419       --> ..................................................
EY926474       --> ..................................................
FD553633       --> ..................................................
FD969439       --> ..................................................
FD944286       --> ..................................................
FD937288       --> ..................................................

               1101   -   1151
UN21630        --> AGAGGTAGTAACAGGAGAGTCCACCGGAAAGTGCAGCGATCGCGCCGGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- ..................................................
FD973823       <-- ..................................................
FD557250       <-- ..................................................
FD978967       <-- AGAGGTAGTAACAGGAGAGTCCACCGGAAAGTGCAGCGATCGCGCCGGCG
EX763688       <-- TGAGGTAGTAACAGGAGAGTCCACCGGAAAGTACAGCGATCGCGCCGGCG
FD937896       <-- AGAGGTAGTAACAGGAGAGTCCACCGGAAAGTGCAGCGATCGCGCCGGCG
FD564615       <-- AGAGGTAGTAACAGGAGAGTCCACCGGAAAGTGCAGCGATCGCGCCGGCG
FD982295       <-- AGAGGTAGTAACAGGAGAGTCCACCGGAAAGTGCAGCGATCGCGCCGGCG
EX762069       <-- TGAGGTAGTAACAGGAGAGTCCACCGGAAAGTGCAGCGATCGCGCCGGCG
FD981145       <-- AGAGGTAGTAACAGGAGAGTCCACCGGAAAGTGCAGCGATCGCGCCGGCG
FD941706       <-- AGAGGTAGTAACAGGAGAGTCCACCGGAAAGTGCAGCGATCGCGCCGGCG
EY930228       <-- AGAGGTAGTAACAGGAGAGTCCACCGGAAAGTGCAGCGATCGCGCCGGCG
EX766425       --> ..................................................
FD568058       --> ..................................................
FD975114       --> ..................................................
FD976923       --> ..................................................
FD934419       --> ..................................................
EY926474       --> ..................................................
FD553633       --> ..................................................
FD969439       --> ..................................................
FD944286       --> ..................................................
FD937288       --> ..................................................

               1151   -   1201
UN21630        --> GAGAATCGGAAAGTGCCGAGACCAGATTTGCTTTGGGATCTGAACGCGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- ..................................................
FD973823       <-- ..................................................
FD557250       <-- ..................................................
FD978967       <-- GAGAATCGGAAAGTGCCGAGACCAGATTTGCTTTGGGATCTGAACGCGGC
EX763688       <-- GAGAATCGAAAAGTGCCGAGACCAGATTTGCTTTGGGATCTGAACGCGGC
FD937896       <-- GAGAATCGGAAAGTGCCGAGACCAGATTTGCTTTGGGATCTGAACGCGGC
FD564615       <-- GAGAATCGGAAAGTGCCGAGACCAGATTTGCTTTGGGATCTGAACGCGGC
FD982295       <-- GAGAATCGGAAAGTGCCGAGACCAGATTTGCTTTGGGATCTGAACGCGGC
EX762069       <-- GAGAATCGAAAAGTGCCGAGACCAGATTTGCTTTGGGATCTGAACGCGGC
FD981145       <-- GAGAATCGGAAAGTGCCGAGACCAGATTTGCTTTGGGATCTGAACGCGGC
FD941706       <-- GAGAATCGGAAAGTGCCGAGACCAGATTTGCTTTGGGATCTGAACGCGGC
EY930228       <-- GAGAATCGGAAAGTGCCGAGACCAGATTTGCTTTGGGATCTGAACGCGGC
EX766425       --> ..................................................
FD568058       --> ..................................................
FD975114       --> ..................................................
FD976923       --> ..................................................
FD934419       --> ..................................................
EY926474       --> ..................................................
FD553633       --> ..................................................
FD969439       --> ..................................................
FD944286       --> ..................................................
FD937288       --> ..................................................

               1201   -   1251
UN21630        --> GGGGAGTGCGATCGGAGCTG---ACCTAGCGAGTCGGCGGAAGAAGGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- ..................................................
FD973823       <-- ..................................................
FD557250       <-- ..................................................
FD978967       <-- GGGGAGTGAGATCGGAGCTG---ACCTAGCGAGTCGGCGGAAGAAGGAGG
EX763688       <-- GGGGAGTGCGATCGGAGCTGCTGACCTAGCGAGTCGGCGGAAGAAGGAGG
FD937896       <-- GGGGAGTGCGATCGGAGCTG---ACCTAGCGAGTCGGCGGAAGAAGGAGG
FD564615       <-- GGGGAGTGCGATCGGAGCTG---ACCTAGCGAGTCGGCGGAAGAAGGAGG
FD982295       <-- GGGGAGTGCGATCGGAACTG---ACCTAGCGAGTCGGCGGAAGAAGGAGG
EX762069       <-- GGGGAGTGCGATCGGAGCTGCTGACCTAGCGAGTCGGCGGAAGAAGGAGG
FD981145       <-- GGGGAGTGCGATCGGAGCTG---ACCTAGCGAGTCGGCGGAAGAAGGAGG
FD941706       <-- GGGGAGTGCGATCGGAGCTG---ACCTAGCGAGTCGGCGGAAGAAAGAGG
EY930228       <-- GGGGAGTGCGATCGGAGCTG---ACCTAGCGAGTCGGCGGAAGAAGGAGG
EX766425       --> ..................................................
FD568058       --> ..................................................
FD975114       --> ..................................................
FD976923       --> ..................................................
FD934419       --> ..................................................
EY926474       --> ..................................................
FD553633       --> ..................................................
FD969439       --> ..................................................
FD944286       --> ..................................................
FD937288       --> ..................................................

               1251   -   1301
UN21630        --> TCGCCATATTTTGTTTGTTCAGTTCAGATCTCTCGGAGAATAGTAACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557548       <-- ..................................................
FD973823       <-- ..................................................
FD557250       <-- ..................................................
FD978967       <-- TCGCCATATTTTGTTTGTTCAGTTCAGATCTCTCcc..............
EX763688       <-- TCGCCATATTTTGTTTGTTCAGTTCAGATCTCTCGGAGAATAGTAACAAA
FD937896       <-- TCGCCATATTTTGTTTGTTCAGTTCAGATCTCTCGGAGAATAGTAACAAA
FD564615       <-- TCGCCATATTTTGTTTGTTCAGTTCAGATCTCTCGGAGAATAGTAACAAA
FD982295       <-- TCGCCATATTTTGTTTGTTCAGTTCAGATCTCTCGGAGAATAGTAACAAA
EX762069       <-- TCGCCATATTTTGTTTGTTCAGTTCAGATCTCTCGGAGAATAGTAACAAA
FD981145       <-- TCGCCATATTTTGTTTGTTCAGTTCAGATCTCTCGGAGAATAGTAACAAA
FD941706       <-- TCGCCATATTTTGTTTGTTCAGTTCAGATCTCTCGGAGAATAGTAACAAA
EY930228       <-- TCGCCATATTTTGTTTGTTCAGTTCAGATCTCTCGGAGAATAGTAACAAA
EX766425       --> ..................................................
FD568058       --> ..................................................
FD975114       --> ..................................................
FD976923       --> ..................................................
FD934419       --> ..................................................
EY926474       --> ..................................................
FD553633       --> ..................................................
FD969439       --> ..................................................
FD944286       --> ..................................................
FD937288       --> ..................................................

               1301   -   1351
UN21630        --> GGTAAGCGCAATCC..
                   ~~~~~~~~~~~~~~~~
FD557548       <-- ................
FD973823       <-- ................
FD557250       <-- ................
FD978967       <-- ................
EX763688       <-- GGTAAGCGCAATCC..
FD937896       <-- GGTAAGCGCAATC...
FD564615       <-- GGTAAGCcc.......
FD982295       <-- GGTAAGCGCcc.....
EX762069       <-- GGTAAGCGCAATCC..
FD981145       <-- GGTAAGCGCAATCC..
FD941706       <-- GGTAAGCGCAATggcc
EY930228       <-- GGTAAGCGCAATCC..
EX766425       --> ................
FD568058       --> ................
FD975114       --> ................
FD976923       --> ................
FD934419       --> ................
EY926474       --> ................
FD553633       --> ................
FD969439       --> ................
FD944286       --> ................
FD937288       --> ................