RadishBase

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Alignment for radish unigene UN21665

               1      -     51
UN21665        --> CATGTAAATGATGAATACTGGACGTAAACATTGGATTTTCACACTTCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- .........................................ttttgCAGG
EV569956       <-- .............................................tttcG
FD562699       <-- ..................................................
EX748004       <-- ..................................................
EW733320       <-- ..................................................
EX896432       <-- ..................................................
EW726263       <-- ..................................................
EX749656       <-- ..................................................
EY930413       <-- ..................................................
EY932866       <-- ..................................................
EX752066       --> CATGTAAATGATGAATACTGGACGTAAACATTGGATTTTCACACTTCAGG
EW729857       --> .....agATGATGAATACTGGACGTAAACATTGGATTTTCACACTTCAGG
FD984074       --> ................ACTGGACGTAAACATTGGATTTTCACACTTCAGG
EX900363       --> ...................GGACGTAAACATTGGATTTTCACACTTCAGG
EY928483       --> ...................GGACGTAAACATTGGATTTTCACACTTCAGG
EY926624       --> .......................................cgCACTTCAGG
FD960541       --> ........................................gCACTTCAGG
EV574373       --> ................................................cG
EX753296       --> ..................................................
EY903664       --> ..................................................
FD969029       --> ..................................................
FD566541       --> ..................................................

               51     -    101
UN21665        --> ACATAAAATAAAAAGCTCTCAAGTAAGAAACAAAACAACACAGGTGAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- ACATAAAATAAAAAGCTCTCAAGTAAGAAACAAAACAACACAGGTGAATT
EV569956       <-- ACATAAAATAAAAAGCTCTCAAGTAAGAAACAAAACAACACAGGTGAATT
FD562699       <-- ..................................................
EX748004       <-- ..................................................
EW733320       <-- ..................................................
EX896432       <-- ..................................................
EW726263       <-- ..................................................
EX749656       <-- ..................................................
EY930413       <-- ..................................................
EY932866       <-- ..................................................
EX752066       --> ACATAAAATAAAAAGCTCTCAAGTAAGAAACAAAACAACACAGGTGAATT
EW729857       --> ACATAAAATAAAAAGCTCTCAAGTAAGAAACAAAACAACACAGGTGAATT
FD984074       --> ACATAAAATAAAAAGCTCTCAAGTAAGAAACAAAACAACACAGGTGAATT
EX900363       --> ACATAAAATAAAAAGCTCTCAAGTAAGAAACAAAACAACACAGGTGAATT
EY928483       --> ACATAAAATAAAAAGCTCTCAAGTAAGAAACAAAACAACACAGGTGAATT
EY926624       --> ACATAAAATAAAAAGCTCTCAAGTAAGAAACAAAACAACACAGGTGAATT
FD960541       --> ACATAAAATAAAAGGCTCTCAAGTAAGAAACAAAACAACACAGGTGAATT
EV574373       --> ACATAAAATAAAAAGCTCTCAAGTAAGAAACAAAACAACACAGGTGAATT
EX753296       --> ....AAAATAAAAAGCTCTCAAGTAAGAAACAAAACAACACAGGTGAATT
EY903664       --> ....AAAATAAAAAGCTCTCAAGTAAGAAACAAAACAACACAGGTGAATT
FD969029       --> ..........AAAAGCTCTCAAGTAAGAAACAAAACAACACAGGTGAATT
FD566541       --> ..................................................

               101    -    151
UN21665        --> GTCTGAGTAGCACAAACACACAAGAAACTCCTTTTTTTTCTTTAGTACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- GTCTGAGTAGCACAAACACACAAGAAACTC-TTTTTTTTCTTTAGTACTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569956       <-- GTCTGAGTAGCACAAACACACAAGAAACTCCTTTTTTT-CTTTAGTACTG  Raphanus raphanistrum subsp. landra
FD562699       <-- .................................TTTTTTCTTTAGTACTG  Raphanus sativus var. oleiformis
EX748004       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW733320       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX896432       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW726263       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX749656       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY930413       <-- ..................................................  Raphanus sativus var. oleiformis
EY932866       <-- ..................................................  Raphanus sativus var. oleiformis
EX752066       --> GTCTGAGTAGCACAAACACACAAGAAACTCCTTTTTTTTCTTCAGTACTG  Raphanus raphanistrum subsp. maritimus
EW729857       --> GTCTGAGTAGCACAAACACACAAGAAACTCCTTTTTTTTCTTTAGTACTG  Raphanus sativus cv Early Scarlet Globe
FD984074       --> GTCTGAGTAGCACAAACACACAAGAAACTCCTTTTTTT-CTTTAGTACTG  Raphanus raphanistrum subsp. landra
EX900363       --> GTCTGAGTAGCACAAACACACAAGAAACTCCTTTTTTTTCTTTAGTACTG  Raphanus sativus cv Early Scarlet Globe
EY928483       --> GTCTGAGTAGCACAAACACACAAGAAACTCCTTTTTTTTCTTTAGTACTG  Raphanus sativus var. oleiformis
EY926624       --> GTCTGAGTAGCACAAACACACAAGAAACTCCTTTTTTTTCTTTAGTACTG  Raphanus sativus var. oleiformis
FD960541       --> GTCTGAGTAGCACAAACACACAAGAAACTCCTTTTTTTTCTTCAGTACTG  Raphanus raphanistrum subsp. maritimus
EV574373       --> GTCTGAGTAGCACAAACACACAAGAAACTCCTTTTTTT-CTTTAGTACTG  Raphanus raphanistrum subsp. landra
EX753296       --> GTCTGAGTAGCACAAACACACAAGAAACTCCTTTTTTT-CTTTAGTACTG  Raphanus raphanistrum subsp. maritimus
EY903664       --> GTCTGAGTAGCACAAACTCACAAGAAACTCCTTTTTTT-CTTTAGTACTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969029       --> GTCTGAGTAGCACAAACACACAAGAAACTCCTTTTTTTTCTTTAGTACTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD566541       --> ........gGCACAAACACATAAGAAACTCCTTTTTTTTCTTTAGTACTG  Raphanus sativus var. oleiformis

               151    -    201
UN21665        --> ATCAAAATCTGGATACAGAGTTGAGAATCAAACAGCAACAAAATAAATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- ATCAAAATCTGGATACAGAGTTGAGAATCAAACAGCAACAAAATAAATGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569956       <-- ATCAAAATCTGGATACAGAGTTGAGAATCAAACAGCAGCAAAATAAATGG  Raphanus raphanistrum subsp. landra
FD562699       <-- ATCAAAATCTGGATACAGAGTTGAGAATCAAACAGCAACAAAATAAATGG  Raphanus sativus var. oleiformis
EX748004       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW733320       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX896432       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW726263       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX749656       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY930413       <-- ..................................................  Raphanus sativus var. oleiformis
EY932866       <-- ..................................................  Raphanus sativus var. oleiformis
EX752066       --> ATCAAAATCTGGATACAGAGTTGAGAAGCAAACAGCAACAAAATAAATGG  Raphanus raphanistrum subsp. maritimus
EW729857       --> ATCAAAATCTGGATACAGAGTTGAGAAGCAAACAGCAACAAAATAAATGG  Raphanus sativus cv Early Scarlet Globe
FD984074       --> ATCAAAATCTGGATACAGAGTTGAGAATCAAACAGCAGCAAAATAAATGC  Raphanus raphanistrum subsp. landra
EX900363       --> ATCAAAATCTGGATACAGAGTTGAGAATCAAACAGCAACAAAATAAATGG  Raphanus sativus cv Early Scarlet Globe
EY928483       --> ATCAAAATCTGGATACAGAGTTGAGAATCAAACAGCAACAAAATAAATGG  Raphanus sativus var. oleiformis
EY926624       --> ATCAAAATCTGGATACAGAGTTGAGAATCAAACAGCAACAAAATAAATGG  Raphanus sativus var. oleiformis
FD960541       --> ATCAAAATCTGGATACAGAGTTGAGAAGCAAACAGCAACAAAATAAATGG  Raphanus raphanistrum subsp. maritimus
EV574373       --> ATCAAAATCTGGATACAGAGTTGAGAATCAAACAGCAGCAAAATAAATGG  Raphanus raphanistrum subsp. landra
EX753296       --> ATCAAAATCTGGATACAGAGTTGAGAATCAAACAGCAGCAAAATAAATGC  Raphanus raphanistrum subsp. maritimus
EY903664       --> ATCAAAATCTGGATACAGAGTTGAGAATCAAACAGCAGCAAAATAAATGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969029       --> ATCAAAATCTGGATACAGAGTTGAGAATCAAACAGCAACAAAATAAATGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD566541       --> ATCAAAATCTGGATACAGAGTTGAGAATCAAACAGCAACAAAATAAATGG  Raphanus sativus var. oleiformis

               201    -    251
UN21665        --> CCTTACGAGCTCTTCGATACTTCCTTGAAGATGCGAGGGAGAATCTCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- CCTTACGAGCTCTTCGATACTTCCTTGAAGATGCGAGGGAGAATCTCATG
EV569956       <-- CCTTACGAGCTCTTCGATACTTCCTTGAAGATGCGAGGGAGAATCTCATG
FD562699       <-- CCTTACGAGCTCTTCGATACTTCCTTGAAGATGCGAGGGAGAATCTCATG
EX748004       <-- ..................................................
EW733320       <-- ..................................................
EX896432       <-- ..................................................
EW726263       <-- ..................................................
EX749656       <-- ..................................................
EY930413       <-- ..................................................
EY932866       <-- ..................................................
EX752066       --> CCTTACGAGCTCTTCGATACTTCCTTGAAGATGCGAGGGAGAATCTCATG
EW729857       --> CCTTACGAGCTCTTCGATACTTCCTTGAAGATGCGAGGGAGAATCTCATG
FD984074       --> CCTTACGAGCTCTTCGATACTTCCTTGAAGATGCGAGGGAGAATCTCATG
EX900363       --> CCTTACGAGCTCTTCGATACTTCCTTGAAGATGCGAGGGAGAATCTCATG
EY928483       --> CCTTACGAGCTCTTCGATACTTCCTTGAAGATGCGAGGGAGAATCTCATG
EY926624       --> CATTACGAGCTCTTCGATACTTCCTTGAAGATGCGAGGGAGAATCTCATG
FD960541       --> CCTTACGAGCTCTTCGATACTTCCTTGAAGATGCGAGGGAGAATCTCATG
EV574373       --> CCTTACGAGCTCTTCGATACTTCCTTGAAGATGCGAGGGAGAATCTCATG
EX753296       --> CCTTACGAGCTCTTCGATACTTCCTTGAAGATGCGAGGGAGAATCTCATG
EY903664       --> CCTTACGAGCTCTTCGATACTTCCTTGAAGATGCGAGGGAGAATCTCATG
FD969029       --> CCTTACGAGCTCTTCGATACTTCCTTGAAGATGCGAGGGAGAATCTCATG
FD566541       --> CCTTACGAGCTCTTCGATACTTCCTTGAAGATGCGAGGGAAAATCTCATG

               251    -    301
UN21665        --> TGCACCGATATCTAGACCTTGAGGCTCCCTGCATAATGTTTGCCCCTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- TGCACCGATATCTAGACCTTGAGGCTCCCTGCATAATGTTTGCCCCTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569956       <-- TGCACCGATATCTAGACCTTGAGGCTCCCTGCATAATGTTTGCCCCTTTT  Raphanus raphanistrum subsp. landra
FD562699       <-- TGCACCGATATCTAGACCTTGAGGCTCCCTGCATAATGTCTGCCCCTTTT  Raphanus sativus var. oleiformis
EX748004       <-- .....................AGGCTCCCTGCATAATGTTTGCCCCTTTT  Raphanus raphanistrum subsp. maritimus
EW733320       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX896432       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW726263       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX749656       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY930413       <-- ..................................................  Raphanus sativus var. oleiformis
EY932866       <-- ..................................................  Raphanus sativus var. oleiformis
EX752066       --> TGCACCGATATCTAGACCTTGAGGCTCCCTGCATAATGTTTGCCCCTTTT  Raphanus raphanistrum subsp. maritimus
EW729857       --> TGCACCGATATCTAGACCTTGAGGCTCCCTGCATAATGTTTGCCCCTTTT  Raphanus sativus cv Early Scarlet Globe
FD984074       --> TGCACCGATATCTAGACCTTGAGGCTCCCTGCATAATGTTTGCCCCTTTT  Raphanus raphanistrum subsp. landra
EX900363       --> TGCACCGATATCTAGACCTTGAGGCTCCCTGCATAATGTCTGCCCCTTTT  Raphanus sativus cv Early Scarlet Globe
EY928483       --> TGCACCGATATCTAGACCTTGAGGCTCCCTGCATAATGTCTGCCCCTTTT  Raphanus sativus var. oleiformis
EY926624       --> TGCACCGATATCTAGACCTTGAGGCTCCCTGCATAATGTCTGCCCCTTTT  Raphanus sativus var. oleiformis
FD960541       --> TGCACCGATATCTAGACCTTGAGGCTCCCTGCATAATGTTTGCCCCTTTT  Raphanus raphanistrum subsp. maritimus
EV574373       --> TGCACCGATATCTAGACCTTGAGGCTCCCTGCATAATGTTTGCCCCTTTT  Raphanus raphanistrum subsp. landra
EX753296       --> TGCACCGATATCTAGACCTTGAGGCTCCCTGCATAATGTTTGCCCCTTTT  Raphanus raphanistrum subsp. maritimus
EY903664       --> TGCACCGATATCTAGACCTTGAGGCTCCCTGCATAATGTCTGCCCCTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969029       --> TGCACCGATATCTAGACCTTGAGGCTCCCTGCATAATGTTTGCCCCTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD566541       --> TGCACCGATATCTAGACCTTGAGGCTCCCTGCATAATGTCTGCCCCTTTT  Raphanus sativus var. oleiformis

               301    -    351
UN21665        --> CTTTCGAGCTAGGAATGAACCAAACATTTCGAATAGATGGAGATTCAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- CTTTCGAGCTAGGAATGAACCAAACATTTCGAATAGATGGAGACTCAAAC
EV569956       <-- CTTTCGAGCTAGGAATGAACCAAACATTTCGAATAGATGGAGATTCAAAC
FD562699       <-- CTTTCGAGCTAGGAATGAACCAAACATTTCGAATAGATGGAGATTCAAAC
EX748004       <-- CTTTCGAGCTAGGAATGAACCAAACATTTCGAATAGATTGAGATTCAAAC
EW733320       <-- ..................................................
EX896432       <-- ..................................................
EW726263       <-- ..................................................
EX749656       <-- ..................................................
EY930413       <-- ..................................................
EY932866       <-- ..................................................
EX752066       --> CTTTCGAGCTAGGAATGAACCAAACATTTCGAATAGATTGAGATTCAAAC
EW729857       --> CTTTCGAGCTAGGAATGAACCAAACATTTCGAATAGATGGAGATTCAAAC
FD984074       --> CTTTCGAGCTAGGAATGAACCAAACATTTCGAATAGATGGAGATTCAAAC
EX900363       --> CTTTCGAGCTAGGAATGAACCAAACATTTCGAATA-ATGGAGATTCAAAC
EY928483       --> CTTTCGAGCTAGGAATGAACCAAACATTTCGAATAGATGGAGATTCAAAC
EY926624       --> CTTTCGAGCTAGGAATGAACCAAACATTTCGAATAGATGGAGATTCAAAC
FD960541       --> CTTTCGAGCTAGGAATGAACCAAGCATTTCGAATAGATTGAGATTCAAAC
EV574373       --> CTTTCGAGCTAGGAATGAACCAAACATTTCGAATAGATGGAGATTCAAAC
EX753296       --> CTTTCGAGCTAGGAATGAACCAAACATTTCGAATAGATGGGGATTCAAAC
EY903664       --> CTTTCGAGCTAGGAATGAACCAAACATTTCGAATAGATGGAGATTCAAAC
FD969029       --> CTTTCGAGCTAGGAATGAACCAAACATTTCGAATAGATGGAGACTCAAAC
FD566541       --> CTTTCGAGCTAGGAATGAACCAAACATTTCGAATAGATGGAGATTCAAAC

               351    -    401
UN21665        --> TGAACAAAGATTCCGTCGTTTTGTCCGAGCTTCCACTTCCTTGAGCCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- TGAACAAAGATTCCGTCGTTTTGTCCGAGCTTCCACTTCCTTGAGCCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569956       <-- TGAACAAAGATTCCGTCGTTTTGTCCGAGCTTCCACTTCCTTGAGCCTTG  Raphanus raphanistrum subsp. landra
FD562699       <-- TGAACAAAGATTCCGTCGTTTTGTCCGAGCTTCCACTTCCTCGAGCCTTG  Raphanus sativus var. oleiformis
EX748004       <-- TGAACAAAGATTCCATCGTTTTGTCCGAGCTTCCACTTCCTTGAGCCTTG  Raphanus raphanistrum subsp. maritimus
EW733320       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX896432       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW726263       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX749656       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY930413       <-- ..................................................  Raphanus sativus var. oleiformis
EY932866       <-- ..................................................  Raphanus sativus var. oleiformis
EX752066       --> TGAACAAAGATTCCATCGTTTTGTCCGAGCTTCCACTTCCTTGAGCCTTG  Raphanus raphanistrum subsp. maritimus
EW729857       --> TGAACAAAGATTCCATCGTTTTGTCCGAGCTTCCACTTCCTTGAGCCTTG  Raphanus sativus cv Early Scarlet Globe
FD984074       --> TGAACAAAGATTCCGTCGTTTTGTCCGAGCTTCCACTTCCTTGAGCCTTG  Raphanus raphanistrum subsp. landra
EX900363       --> TGAACAAAGATTCCGTCGTTTTGTCCGAGCTTCCACTTCCTCGAGCCTTG  Raphanus sativus cv Early Scarlet Globe
EY928483       --> TGAACAAAGATTCCGTCGTTTTGTCCGAGCTTCCACTTCCTCGGGCCTTG  Raphanus sativus var. oleiformis
EY926624       --> TGAACAAAGATTCCGTCGTTTTGTCCGAGCTTCCACTTCCTCGAGCCTTG  Raphanus sativus var. oleiformis
FD960541       --> TGAACAAAGATTCCATCGTTTTGTCCGAGCTTCCACTTCCTTGAGCCTTG  Raphanus raphanistrum subsp. maritimus
EV574373       --> TGAACAAAGATTCCGTCGTTTTGTCCGAGCTTCCACTTCCTTGAGCCTTG  Raphanus raphanistrum subsp. landra
EX753296       --> TGAACAAAGATTCCGTCGTTTTGTCCGAGCTTCCACTTCCTTGAGCCTTG  Raphanus raphanistrum subsp. maritimus
EY903664       --> TGAACAAAGATTCCGTCGTTTTGTCCGAGCTTCCACTTCCTTGAGCCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969029       --> TGAACAAAGATTCCGTCGTTTTGTCCGAGCTTCCACTTCCTTGAGCCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD566541       --> TGAACAAAGATTCCGTCGTTTTGTCCGAGCTTCCACTTCCTCGAGCCTTG  Raphanus sativus var. oleiformis

               401    -    451
UN21665        --> ACCTTTCCACACCTGCGGGTAAGATATACTACTCTTTGATGTCACTAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- ACCTTTCCACACCTGCGGGTAAGATATACTACTCTTTGATGTCACTAGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569956       <-- ACCTTTCCACACCTGGGGGTAAGATATACTACTCTTTGATGTCACTAGGC  Raphanus raphanistrum subsp. landra
FD562699       <-- ACCTTTCCACACCTGCGGGTAAGATATACTACTCTTTGATGTCACCAGGA  Raphanus sativus var. oleiformis
EX748004       <-- ACCTTTCCACACCTGCGGGTAAGATATACTACTCTTTGATGTCACTAGGC  Raphanus raphanistrum subsp. maritimus
EW733320       <-- ..CTTTCCACAC-TGCGGGTAAGATATACTACTCTTTGATGTCACTAGGC  Raphanus sativus cv Rat-Tail Radish #3870
EX896432       <-- ................GGGTAAGATATACTACTCTTTGATGTCACCAGGA  Raphanus sativus cv Early Scarlet Globe
EW726263       <-- ..................GTAAGATATACTACTCTT-GATGTCACTAG-C  Raphanus sativus cv Early Scarlet Globe
EX749656       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY930413       <-- ..................................................  Raphanus sativus var. oleiformis
EY932866       <-- ..................................................  Raphanus sativus var. oleiformis
EX752066       --> ACCTTTCCACACCTGCGGGTAAGATATACTACTCTTTGATGTCACTAGGC  Raphanus raphanistrum subsp. maritimus
EW729857       --> ACCTTTCCACACCTGCGGGTAAGATATACTACTCTTTGATGTCACTAGGC  Raphanus sativus cv Early Scarlet Globe
FD984074       --> ACCTTTCCACACCTGGGGGTAAGATATACTACTCTTTGATGTCACTAGGC  Raphanus raphanistrum subsp. landra
EX900363       --> ACCTTTCCACACCTGCGGGTAAGATATACTACTCTTTGATGTCACCAGGA  Raphanus sativus cv Early Scarlet Globe
EY928483       --> ACCTTTCCACACCTGCGGGTAAGATATACTACTCTTTGATGTCACCAGGA  Raphanus sativus var. oleiformis
EY926624       --> ACCTTTCCACACCTGCGGGTAAGATATACTACTCTTTGATGTCACCAGGA  Raphanus sativus var. oleiformis
FD960541       --> ACCTTTCCACACCTGCGGGTAAGATATACTACTCTTTGATGTCACTAGGC  Raphanus raphanistrum subsp. maritimus
EV574373       --> ACCTTTCCACACCTGGGGGTAAGATATACTACTCTTTGATGTCACTAGGC  Raphanus raphanistrum subsp. landra
EX753296       --> ACCTTTCCACACCTGCGGGTAAGATATACTACTCTTTGATGTCACTAGGC  Raphanus raphanistrum subsp. maritimus
EY903664       --> ACCTTTCCACACCTGGGGGTAAGATATACTACTCTTTGATGTCACTAGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969029       --> ACCTTTCCACACCTGCGGGTAAGATATACTACTCTTTGATGTCACTAGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD566541       --> ACCTTTCCACACCTGCGGGTAAAATATACTACTCTTTGATGTCACCAGGA  Raphanus sativus var. oleiformis

               451    -    501
UN21665        --> AAGCAGCTTTGGAAAAGGACTCTTCTGCGTATTGCCTCAGATATGTGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- AAGCAGCTTTGGAAAAGGATTCTTCTGCGTACTGCCTCAGATACGTAAAG
EV569956       <-- AAGCGGCTTTGGAAAAGGACTCTTCTGCGTATTGCCTCAGATATGTGAAG
FD562699       <-- AAGCAGCTTTGGAAAAGGACTCTTCTGCGTATTGCCTCAGATATGTGAAG
EX748004       <-- AAGCAGCTTTGGAAAAGGACTCTTCTGCGTATTGCCTCAGATATGTGAAG
EW733320       <-- AAGCAGCTTTGGAAAAGGATTCTTCTGCGTACTGCCTCAGATACGTAAAG
EX896432       <-- AAGCAGATTTGGAAAAGGACTCTTCTGCGTATTGCCTCAGATATGTGAAG
EW726263       <-- AAGCAGCTT-GGAAAAG-ACTCTTCTGCGTAT-G-CTCAGATATGTGAAG
EX749656       <-- ................................atgCTCAGATATGTGAAG
EY930413       <-- ..................................................
EY932866       <-- ..................................................
EX752066       --> AAGCAGCTTTGGAAAAGGACTCTTCTGCGTATTGCCTCAGATATGTGAAG
EW729857       --> AAGCAGCTTTGGAAAAGGACTCTTCTGCGTATTGCCTCAGATATGTGAAG
FD984074       --> AAGCAGCTTTGGAAAAGGACTCTTCTGCGTATTGCCTCAAATATGTGAAG
EX900363       --> AAGCAGATTTGGAAAAGGACTCTTCTGCGTATTGCCTCAGATATGTGAAG
EY928483       --> AAGCAGCTTTGGAAAAGGACTCTTCTGCGTATTGCCTCAGATATGTGAAG
EY926624       --> AAGCAGCTTTGGAAAAGGACTCTTCTGCGTATTGCCTCAGATATGTGAAG
FD960541       --> AAGCAGCTTTGGAAAAGGACTCTTCTGCGTATTGCCTCAGATATGTGAAG
EV574373       --> AAGCGGCTTTGGAAAAGGACTCTTCTGCGTATTGCCTCAAATATGTGAAG
EX753296       --> AAGCAGCTTTGGAAAAGGACTCTTCTGCGTATTGCCTCAGATATGTGAAG
EY903664       --> AAGCAGCTTTGGAAAAGGACTCTTCTGCGTATTGCCTCAGATATGTGAAG
FD969029       --> AAGCAGCTTTGGAAAAGGATTCTTCTGCGTACTGCCTCAGATACGTAAAG
FD566541       --> AAGCAGCTTTGGAAAAGGACTCTTCTGCGTATTGCCTC............

               501    -    551
UN21665        --> CAGTTACTGTGTGTGTGTGGTGACTCAAAAGCCTTATCGATGTTGACTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- CAGTTACTGTGCGTGTGTGGTGACTCAAACGCCTTATCGATGTTGACTAC
EV569956       <-- CAGTTACTGTGTGTGTGTGGTGACTCAAAAGCCTTATCGATGTTGACTAC
FD562699       <-- CAGTCACTGTGTGTGT--GGTGACTCAAAAGCCTTATCGATGTTGACTAC
EX748004       <-- CAGTTACTGTGTGTGTGTGGTGACTCAAAAGCCTTATCGATGTTGACTAC
EW733320       <-- CAGTTACTGTGCGTGTGTGGTGACTCAAAAGCCTTATCGATGTTGACTAC
EX896432       <-- CAGTTACTGTGTGTGTGTGGTGACTCAAAAGCCTTATCGATGTTGACTAC
EW726263       <-- CAGTTACTGTGTGTGTGTG-TGACTCAAAAGCCTTATCGATGTTGACTAC
EX749656       <-- CAGTTACTGTGTGTGTGTGGTGACTCAAAAGC-TTATCGATGTTGACTAC
EY930413       <-- ..................................................
EY932866       <-- ..................................................
EX752066       --> CAGTTACTGTGTGTGTGTGGTGACTCAAAAGCCTTATCGATGTTGACTAC
EW729857       --> CAGTTACTGTGTGTGTGTGGTGACTCAAAAGCCTTATCGATGTTGACTAC
FD984074       --> CAGTTACTGTGTGTGTGTGGTGACTCAAAAGCCTTATCGATGTTGACTAC
EX900363       --> CAGTTACTGTGTGTGTGTGGTGACTCAAAAGCCTTATCGATGTTGACTAC
EY928483       --> CAGTTACTGTGTGTGTG--GTGACTCAAAAGCCTTATCGATGTTGACTAC
EY926624       --> CAGTTACTGTGTGTGTGTGGTGACTCAAAAGCCTTATCGATGTTGACTAC
FD960541       --> CAGTTACTGTGTGTGTGTGGTGACTCAAAAGCCTTATCGATGTTGACTAC
EV574373       --> CAGTTACTGTGTGTGTGTGGTGACTCAAAAGCCTTATCGATGTTGACTAC
EX753296       --> CAGTTACTGTGTGTGTGTGGTGACTCAAAAGCCTTATCGATGTTGACTAC
EY903664       --> CAGTTACTGTGTGTGTGTGGTGACTCAAAAGCCTTATCGATGTTGACTAC
FD969029       --> CAGTTACTGTGCGTGTGTGGTGACTCAAACGCCTTATCGATGTTGACTAC
FD566541       --> ..................................................

               551    -    601
UN21665        --> TGGTGCGTACTTATCGGTTTGTGTTTTCTCT--TTGTCAAGAAGGAAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- TGGTGCGTACTTATCGGTTTGTGTTTTTTCT--TTGTCAAGAAGGAAATA
EV569956       <-- TGGTGCGTACTTATCGGTTTGTGTTTTCTCT--TTGTCAAGAAGGAAATA
FD562699       <-- TGGTGCGTACTTATCGGTTTGTGTTTTCTCT--TTGTCAAGAAGGAAATA
EX748004       <-- TGGTGCGTACTTATCGGTTTGTGTTTTCTCT--TTGTCAAGAAGGAAATA
EW733320       <-- TGGTGCGTACTTATCGGTTTGTGTTTTCTCT--TTGTCAAGAAGGAAATA
EX896432       <-- TGGTGCGTACTTATCGGTTTGTGTTTTCTCT--TTGTCAAGAAGGAAATA
EW726263       <-- TGGTGCGTACTTATCGGTTTGTGTTTTCTCT--TTGTCAAGAAGGAAATA
EX749656       <-- TGGTGCGTACTTATCGGTTTGTGTTT-CTCT--TTGTCAAGAAGGAAATA
EY930413       <-- .......TACTTATCGGTTTGTGTTTTCTCTCTTTGTCAAGAAGGAAATA
EY932866       <-- ..................................................
EX752066       --> TGGTGCGTACTTATCGGTTTGTGTTTTCTCT--TTGTCAAGAAGGAAATA
EW729857       --> TGGTGCGTACTTATCGGTTTGTGTTTTCTCT--TTGTCAAGAAGGAAATA
FD984074       --> TGGTGCGTACTTATCGGTTTGTGTTTTCTCT--TTGTCAAGAAGGAAATA
EX900363       --> TGGTGCGTACTTATCGGTTTGTGTTTTCTCT--TTGTCAAGAAGGAAATA
EY928483       --> TGGTGCGTACTTATCGGTTTGTGTTTTCTCT--TTGTCAAGAAGGAAATA
EY926624       --> TGGTGCGTACTTATCGGTTTGTGTTTTCTCT--TTGTCAAGAAGGAAATA
FD960541       --> TGGTGCGTACTTATCGGTTTGTGTTTTCTCT--T................
EV574373       --> TGGTGCGTACTTATCGGTTTGTGTTTTCTCT--TTGTCAAGAAGGAAATA
EX753296       --> TGGTGCGTACTTATCGGTTTGTGTTTTCTCT--TTGTCAAGAAGGAAATA
EY903664       --> TGGTGCGTACTTATCGGTTTGTGTTTTGTCT--TTGTCAAGAAGGAAATA
FD969029       --> TGGTGCGTACTTATCGGTTTGTGTTTTTTCT--TTGTCAAGAAGGAAATA
FD566541       --> ..................................................

               601    -    651
UN21665        --> GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGACAGCTGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGACAGCTGTTT
EV569956       <-- GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGACAGCTGTTT
FD562699       <-- GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGACAGCTGTTT
EX748004       <-- GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGACAGCTGTTT
EW733320       <-- GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGACAGCTGTTT
EX896432       <-- GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGACAGCTGTTT
EW726263       <-- GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGATAGCTGTTT
EX749656       <-- GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGACAGCTGTTT
EY930413       <-- GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGACAGCTGTTT
EY932866       <-- ...........................GTGCCACGACTTGACAGCTGTTT
EX752066       --> GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGACAGCTGTTT
EW729857       --> GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGATAGCTGTTT
FD984074       --> GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGACAGCTGTTT
EX900363       --> GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGACAGCTGTTT
EY928483       --> GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGACAGCTGTTT
EY926624       --> GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGACAGCTGTTT
FD960541       --> ..................................................
EV574373       --> GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGACAGCTGTTT
EX753296       --> GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGACAGC.....
EY903664       --> GACT--ACTATCCACTTTAGATGTCTCGTGCCACGACTTGACAGCTGTTT
FD969029       --> GACTCTACTATCCACTTTAGATGTCTCGTGCCACGACTTGACAGCTGTTT
FD566541       --> ..................................................

               651    -    701
UN21665        --> CCATGGTCTCAACAAGAAAAGAAAA-CATCTCTTTCCAACACTCTTCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- CCATGGTCTCAACAAGAAAAGAGAA-CATCTCTTTCCAACACTCTTCAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569956       <-- CCATGGTCTCAACAAGAAAAGAGAA-CATCTCTTTCCAACACTCTTCAGC  Raphanus raphanistrum subsp. landra
FD562699       <-- CCATGGTCTCAACAAGAAAAGAAAA-CATCTCTTTCCAACACTCTTCAGC  Raphanus sativus var. oleiformis
EX748004       <-- CCATGGTCTCAACAAGAAAAGAAAA-CATCTCTTTCCAACACTCTTCAGC  Raphanus raphanistrum subsp. maritimus
EW733320       <-- CCATGGTCTCAACAAGAAAAGAAAA-CATCTCTTTCCAACACTCTTCAGC  Raphanus sativus cv Rat-Tail Radish #3870
EX896432       <-- CCATGGTCTCAACAAGAAAAGAAAA-CATCTCTTTCCAACACTCTTCAGC  Raphanus sativus cv Early Scarlet Globe
EW726263       <-- CCATGGTCTCAACAAGAAAAGAGAA-CATCTCTTTCCAACACTCTTCAGC  Raphanus sativus cv Early Scarlet Globe
EX749656       <-- CCATGGTCTCAACAAGAAAAGAGAA-CATCTCTTTCCAACACTCTTCAGC  Raphanus raphanistrum subsp. maritimus
EY930413       <-- CCATGGTCTCAACAAGAAAAGAAAA-CATCTCTTTCCAACACTCTTCAGC  Raphanus sativus var. oleiformis
EY932866       <-- CCATGGTCTCAACAAGAAAAGAAAAACATCTCTTTCCAACACTCTTCAGC  Raphanus sativus var. oleiformis
EX752066       --> CCATGGTCTCAACAAGAAAAGAAAA-CATCTCTTTCCAACACTCTTCAGC  Raphanus raphanistrum subsp. maritimus
EW729857       --> CCATGGTCTCAACAAGAAAAGAGAA-CATCTCTTTCCAACACTCTTCAGC  Raphanus sativus cv Early Scarlet Globe
FD984074       --> CCATGGTCTCAACAAGAAAAGAGAA-CATCTCTTTCCAACACTCTTCAGC  Raphanus raphanistrum subsp. landra
EX900363       --> CCATGGTCTCAACAAGAAAAGAAAA-CATCTCTTTCCAACACTCTTCAGC  Raphanus sativus cv Early Scarlet Globe
EY928483       --> CCATGGTCTCAACAAGAAAAGAAAA-CATCTCTTTCCAACACTCTTCAGC  Raphanus sativus var. oleiformis
EY926624       --> CCATGGTCTCAACAAGAAAAGAAAA-CATCTCTTTCCAACACTCTTCAGC  Raphanus sativus var. oleiformis
FD960541       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV574373       --> CCATGGTCTCAACAAGAAAAGAGAA-CATCTCTTTCCAACACTCTTCAGC  Raphanus raphanistrum subsp. landra
EX753296       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY903664       --> CCATGGTCTCAACAAGAAAAGAGAA-CATCTCTTTCCAACACTCTTCAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969029       --> CCATGGTCTCAACAAGAAAAGAGAA-CATCTCTTTCCAACACTCTTCAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD566541       --> ..................................................  Raphanus sativus var. oleiformis

               701    -    751
UN21665        --> TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
EV569956       <-- TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
FD562699       <-- TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
EX748004       <-- TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
EW733320       <-- TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
EX896432       <-- TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
EW726263       <-- TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
EX749656       <-- TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
EY930413       <-- TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
EY932866       <-- TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
EX752066       --> TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
EW729857       --> TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
FD984074       --> TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
EX900363       --> TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
EY928483       --> TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
EY926624       --> TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
FD960541       --> ..................................................
EV574373       --> TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
EX753296       --> ..................................................
EY903664       --> TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTG....
FD969029       --> TCCATAGTTTGCAGACAGTTCAGATTTAAAGCTGTCAAGATGCTTGGCCA
FD566541       --> ..................................................

               751    -    801
UN21665        --> TGTTGACATTAGACCTCAAGTTCTCGAGTTCTTGAGCTCTCTGTTTCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- TGTTGACATTAGACCTCAc...............................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569956       <-- TGTTGACATTTGACCTCAAGTTCTCGAGTTCTTGAGCTCTCTGTTTCTCC  Raphanus raphanistrum subsp. landra
FD562699       <-- TGTTGACATTAGACCTCAAGTTCc..........................  Raphanus sativus var. oleiformis
EX748004       <-- TGTTGGCATTAGACCTCAAGTTCTCGAGTTCTTGAGCTCTCTGTTTCTCC  Raphanus raphanistrum subsp. maritimus
EW733320       <-- TGTTGACATTAGACCTCAAGTTCTCGAGTTCTTGAGCTCTCTGTTTCTCC  Raphanus sativus cv Rat-Tail Radish #3870
EX896432       <-- TGTTGACATTAGACCTCAAGTTCTCGAGTTCTTGAGCTCGCTGTTTCTCC  Raphanus sativus cv Early Scarlet Globe
EW726263       <-- TGTTGACATTAGACCTCAAGTTCTCGAGTTCTTGAGCTCTCTGTTTCTCC  Raphanus sativus cv Early Scarlet Globe
EX749656       <-- TGTTGACATTAGACCTCAAGTTCTCGAGTTCTTGAGCTCTCTGTTTCTCC  Raphanus raphanistrum subsp. maritimus
EY930413       <-- TGTTGACATTAGACCTCAAGTTCTCGAGTTCTTGAGCTCGCTGTTTCTCC  Raphanus sativus var. oleiformis
EY932866       <-- TGTTGACATTAGACCTCAAGTTCTCGAGTTCTTGAGCTCGCTGTTTCTCC  Raphanus sativus var. oleiformis
EX752066       --> TGTTGGCATTAGACCTCAAGTTC...........................  Raphanus raphanistrum subsp. maritimus
EW729857       --> TGTTGACATTAGACCTCAAGTTCTCGAGTTCTTGAGCTCTC.........  Raphanus sativus cv Early Scarlet Globe
FD984074       --> TGTTGACATTAGACCTCAAGTTCTCGAGTTCTTGAGCTCTCTGTT.....  Raphanus raphanistrum subsp. landra
EX900363       --> TGTTGACATTAGACCTCAAGTTCTCGAGTTCTTGAGCTCgc.........  Raphanus sativus cv Early Scarlet Globe
EY928483       --> TGTTGACATTAGACCTCAAGTTCTCGAGTTCTTGAGCTCGCTGTTTCTCC  Raphanus sativus var. oleiformis
EY926624       --> TGTTGAC...........................................  Raphanus sativus var. oleiformis
FD960541       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV574373       --> TGTTGACATTTGACCTCAAGTTCTCGAGTTCTTGAGCTCTCTGTTTCTCC  Raphanus raphanistrum subsp. landra
EX753296       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY903664       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969029       --> TGTTGACATTAGACCTCAc...............................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD566541       --> ..................................................  Raphanus sativus var. oleiformis

               801    -    851
UN21665        --> TTCTGCAGCTGACCGAGCCTCTTGATCTTTCTTGAGACTTCTGCGCTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569956       <-- TTCTGCAGCTGACCGAGCCTCTTGACCTTCCTTGAAACTTCTGC......  Raphanus raphanistrum subsp. landra
FD562699       <-- ..................................................  Raphanus sativus var. oleiformis
EX748004       <-- TTCTGCAGCTGACCGAGCCTCTTGATATTCCTTGAAACTTCTGCGCTTTG  Raphanus raphanistrum subsp. maritimus
EW733320       <-- TTCTGCAGCTGACCGAGCCTCTTGATCTTTCTTGAGACTTCTGCGCTCTG  Raphanus sativus cv Rat-Tail Radish #3870
EX896432       <-- TTCTGCAGCTGACCGAGCCTCTTGATCTTTCTTGAGACTTCTGCGCTTTG  Raphanus sativus cv Early Scarlet Globe
EW726263       <-- TTCTGCAGCTGACCGAGCCTCTTGATCTTTCTTGAGACTTCTGCGCTTTG  Raphanus sativus cv Early Scarlet Globe
EX749656       <-- TTCTGCAGCTGACCGAGCCTCTTGATCTTCCTTGAAACTTCTGCGCTTTG  Raphanus raphanistrum subsp. maritimus
EY930413       <-- TTCTGCAGCTGACCGAGCCTCTTGATCTTTCTTGAGACTTCTGCGCTTTG  Raphanus sativus var. oleiformis
EY932866       <-- TTCTGCAGCTGACCGAGCCTCTTGATCTTTCTTGAGACTTCTGCGCTTTG  Raphanus sativus var. oleiformis
EX752066       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW729857       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD984074       --> ..................................................  Raphanus raphanistrum subsp. landra
EX900363       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY928483       --> TTCTGCAGCTG.......................................  Raphanus sativus var. oleiformis
EY926624       --> ..................................................  Raphanus sativus var. oleiformis
FD960541       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV574373       --> TTCTGCAGCTGACCGAGCCTCTTGACCTTCCTTGAAACTTCTGC......  Raphanus raphanistrum subsp. landra
EX753296       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY903664       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969029       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD566541       --> ..................................................  Raphanus sativus var. oleiformis

               851    -    901
UN21665        --> TGGGTTGTACTGTAGAGCCATTTCAAATGCAGCCAAGGAATCATCATATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- ..................................................
EV569956       <-- ..................................................
FD562699       <-- ..................................................
EX748004       <-- TGGGTTGTACTGTAGAGCCATTTCAAATGCAGCC................
EW733320       <-- TGGGTTGTACTGTAGAGCCATTTCAAATGCAGCCAAGGAATCATCATATT
EX896432       <-- TGGGTTGTACTGTAGAGCCATTTCAAATGCAGCCAAGGAATCATCATATT
EW726263       <-- TGGGTTGTACTGCAGAGCCATTTCAAATGCAGCCAAGGCATCATCATATT
EX749656       <-- TGGGTTGTACTGTAGAGCCATTTCAAATGCAGCCAAGGCCTCATCATATT
EY930413       <-- TGGGTTGTACTGTAGAGCCATTTCAAATGCAGCCAAGGAATCATCATATT
EY932866       <-- TGGGTTGTACTGTAGAGCCATTTCAAATGCAGCCAAGGAATCATCATATT
EX752066       --> ..................................................
EW729857       --> ..................................................
FD984074       --> ..................................................
EX900363       --> ..................................................
EY928483       --> ..................................................
EY926624       --> ..................................................
FD960541       --> ..................................................
EV574373       --> ..................................................
EX753296       --> ..................................................
EY903664       --> ..................................................
FD969029       --> ..................................................
FD566541       --> ..................................................

               901    -    951
UN21665        --> TCTCCATGGCTTCAAGCACAGAACCTTTCCTGAAGTACCCCTTCTCCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- ..................................................
EV569956       <-- ..................................................
FD562699       <-- ..................................................
EX748004       <-- ..................................................
EW733320       <-- TCTCCATGGCTTCAAGCACAGAACCTTTCCTGAAGTACCCCTTCTCCCAT
EX896432       <-- TCTCCATGGCTTCAAGCACAGAACCTTTCCTGAAGTACCCCTTCTCCCAT
EW726263       <-- TCTCCATGGCTTCAAGCACAGAACCTTTCCTGAAGTACCCCTTCTCCCAT
EX749656       <-- TCTCCATGGCTTCAAGAATAGAACCTTTCCTGAAGTAACCCTTCTCCCAT
EY930413       <-- TCTCCATGGCTTCAAGCACAGAACCTTTCCTGAAGTACCCCTTCTCCCAT
EY932866       <-- TCTCCATGGCTTCAAGCACAGAACCTTTCCTGAAGTACCCCTTCTCCCAT
EX752066       --> ..................................................
EW729857       --> ..................................................
FD984074       --> ..................................................
EX900363       --> ..................................................
EY928483       --> ..................................................
EY926624       --> ..................................................
FD960541       --> ..................................................
EV574373       --> ..................................................
EX753296       --> ..................................................
EY903664       --> ..................................................
FD969029       --> ..................................................
FD566541       --> ..................................................

               951    -   1001
UN21665        --> TGCGGGTTGAGTTTGATGGTTGTCTCAGCATCAGCCAAGGCTTTGCTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- ..................................................
EV569956       <-- ..................................................
FD562699       <-- ..................................................
EX748004       <-- ..................................................
EW733320       <-- TGAGGGTTGAGTTTGATGGTTGTCTCAGCATCAGCTAAGGCTTTGCTAAG
EX896432       <-- TGCGGGTTGAGTTTGATGGTTGTCTCAGCATCAGCCAAGGCTTTGCTAAG
EW726263       <-- TGAGGGTTGAGTTTGATGGTTGTCTCAGCATCAGCTAAGGCTTTGCTAAG
EX749656       <-- TGCGGGTTGAGTTTGATGGTTGTCTCAGCATCAGCCAAGGCTTTGCTAAG
EY930413       <-- TGCGGGTTGAGTTTGATGGTTGTCTCAGCATCAGCCAAGGCTTTGCTAAG
EY932866       <-- TGCGGGTTGAGTTTGATGGTTGTCTCAGCATCAGCCAAGGCTTTGCTAAG
EX752066       --> ..................................................
EW729857       --> ..................................................
FD984074       --> ..................................................
EX900363       --> ..................................................
EY928483       --> ..................................................
EY926624       --> ..................................................
FD960541       --> ..................................................
EV574373       --> ..................................................
EX753296       --> ..................................................
EY903664       --> ..................................................
FD969029       --> ..................................................
FD566541       --> ..................................................

               1001   -   1051
UN21665        --> CTTAACGAGACTCAAGAAGGCAGCAGCTCGGTTACTGTAAAGAGTAGCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- ..................................................
EV569956       <-- ..................................................
FD562699       <-- ..................................................
EX748004       <-- ..................................................
EW733320       <-- CTTAACGAGACTCAAGAAGGCAGCAGCTCGGTTACTGTAAAGAGTAGCGT
EX896432       <-- CTTAACGAGACTCAAGAAGGCAGCAGCTCGGTTACTGTAAAGAGTAGCGT
EW726263       <-- CTTAACGAGACTCAAGAAGGCAACAGCTCGGTTACTGTAAAGAGTAGCGT
EX749656       <-- CTTAACGAGACTCAAGAAGGCAGCAGCTCGGTTACTGTAAAGAGTAGCGT
EY930413       <-- CTTAACGAGACTCAAGAAGGCGGCAGCTCGGTTACTGTAAAGAGTAGCGT
EY932866       <-- CTTAACGAGACTCAAGAAGGCAGCAGCTCGGTTACTGTAAAGAGTAGCGT
EX752066       --> ..................................................
EW729857       --> ..................................................
FD984074       --> ..................................................
EX900363       --> ..................................................
EY928483       --> ..................................................
EY926624       --> ..................................................
FD960541       --> ..................................................
EV574373       --> ..................................................
EX753296       --> ..................................................
EY903664       --> ..................................................
FD969029       --> ..................................................
FD566541       --> ..................................................

               1051   -   1101
UN21665        --> TAGAAGGATCGAGCTTGATGGCCTGAGTGTAGAGAGCTGCGGCTTTTAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- ..................................................
EV569956       <-- ..................................................
FD562699       <-- ..................................................
EX748004       <-- ..................................................
EW733320       <-- TAGAAGGATCGAGCTTGATGGCCTGAGTGTAGAGAGCTGCGGCTTTTAGG
EX896432       <-- TAGAAGGATCGAGCTTGATGGCCTGAGTGTAGAGAGCTGCGGCTTTTAGG
EW726263       <-- TAGAAGGATCGAGCTTGATGGCCTGAGTGTAGAGAGCTGCGGCTTTAAGA
EX749656       <-- TAGAAGGATCGAGCTTGATGGCCTGAGTGTAGAGAGCTGCGGCTTTAAGG
EY930413       <-- TAGAAGGATCGAGCTTGATGGCCTGAGTGTAGAGAGCTGCGGCTTTTAGG
EY932866       <-- TAGAAGGATCGAGCTTGATGGCCTGAGTGTAGAGAGCTGCGGCTTTTAGG
EX752066       --> ..................................................
EW729857       --> ..................................................
FD984074       --> ..................................................
EX900363       --> ..................................................
EY928483       --> ..................................................
EY926624       --> ..................................................
FD960541       --> ..................................................
EV574373       --> ..................................................
EX753296       --> ..................................................
EY903664       --> ..................................................
FD969029       --> ..................................................
FD566541       --> ..................................................

               1101   -   1151
UN21665        --> TAGTTCCCAGCTTTGAAGAACTCGTTCCCTTTCTCCTTTAGAGATTTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- ..................................................
EV569956       <-- ..................................................
FD562699       <-- ..................................................
EX748004       <-- ..................................................
EW733320       <-- TAGTTCCCAGCTTTGAAGAACTCGTTCCCTTTCTCCTTTAGAGATTTCTC
EX896432       <-- TAGTTC............................................
EW726263       <-- TAGTTCCCAGCTTTGAAGAACTCGTTACCTTTCTCCTTTAGAGCTTTCTC
EX749656       <-- TAGTTCCCAGCTTTGAAGAACTCGTTACCTTTCTCCTTTAGAGATTTCTC
EY930413       <-- TAGTTCCCAGCTTTGAAGAACTCGTTCCCTTTCTCCTTTAGAGATTTCTC
EY932866       <-- TAGTTCCCAGCTTTGAAGAACTCGTTCCCTTTCTCCTTTAGAGATTTCTC
EX752066       --> ..................................................
EW729857       --> ..................................................
FD984074       --> ..................................................
EX900363       --> ..................................................
EY928483       --> ..................................................
EY926624       --> ..................................................
FD960541       --> ..................................................
EV574373       --> ..................................................
EX753296       --> ..................................................
EY903664       --> ..................................................
FD969029       --> ..................................................
FD566541       --> ..................................................

               1151   -   1201
UN21665        --> ACCTGTTTCCACTCCTTTCTCCGCCATCGCCAATCGAAGAGAGAAATCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD973316       <-- ..................................................
EV569956       <-- ..................................................
FD562699       <-- ..................................................
EX748004       <-- ..................................................
EW733320       <-- ACCTGTTTCCACTCCTTTCTCCGCCATCGCCAATCtggtgactcc.....
EX896432       <-- ..................................................
EW726263       <-- ACCTGATTCCACTCCTTTCTCCGCCATCGCCAATCGAAGAG.........
EX749656       <-- GCCTGTTTCCACTCCTTTCTCCGCCATCGCCAATCCAAGAGAGAAATCTG
EY930413       <-- ACCTGTTTCCACTCCTTTCTCCGCCATCGCCAATCtcc............
EY932866       <-- ACCTGTTTCCACTCCTTTCTCCGCCATCGCCAATCtcc............
EX752066       --> ..................................................
EW729857       --> ..................................................
FD984074       --> ..................................................
EX900363       --> ..................................................
EY928483       --> ..................................................
EY926624       --> ..................................................
FD960541       --> ..................................................
EV574373       --> ..................................................
EX753296       --> ..................................................
EY903664       --> ..................................................
FD969029       --> ..................................................
FD566541       --> ..................................................

               1201   -   1251
UN21665        --> GTGACTGTTTCTCC
                   ~~~~~~~~~~~~~~
FD973316       <-- ..............
EV569956       <-- ..............
FD562699       <-- ..............
EX748004       <-- ..............
EW733320       <-- ..............
EX896432       <-- ..............
EW726263       <-- ..............
EX749656       <-- GTGACTGTTTCTCC
EY930413       <-- ..............
EY932866       <-- ..............
EX752066       --> ..............
EW729857       --> ..............
FD984074       --> ..............
EX900363       --> ..............
EY928483       --> ..............
EY926624       --> ..............
FD960541       --> ..............
EV574373       --> ..............
EX753296       --> ..............
EY903664       --> ..............
FD969029       --> ..............
FD566541       --> ..............