1      -     51
UN21707        --> GGGTGGACTCGCGAGAATAGAATCAATCTCAGGTGGGATTGTGAAATCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545082       <-- GGGTGGACTCGCGAGAATAGAATCAATCTCAGGTGGGATTGTGAAATCGA
EV572592       <-- .................................ggcaggtaggattgtga
EV574324       <-- ..................................ggaggtaggattgtga
EX774878       <-- ..................................ggaggtaggattgtga
EW730889       <-- .....................................gaggtaggattgt
FD944011       <-- ..................................................
EV549653       --> GGGTGGACTCGCGAGAATAGAATCAATCTCAGGTGGGATTGTGAAATCGA
FD532767       --> ................................ggaGGATTGTGAAATCG-
EV567711       --> .................................ggcaggtaggattgtga
EV569885       --> ..................................ggaggtaggattgtga
EX770730       --> ..................................ggaggtaggattgtga
EW725713       --> .....................................gaggtaggattgt
FD948183       --> ..................................................
EY905709       --> ..................................................

               51     -    101
UN21707        --> AGAGAGAGAGAGAGAGTCTGAAAATTGCAGTGCGAATCGGGAATCTCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545082       <-- AGAGAGAGAGAGAGAGTCTGAAAATTGCAGTGCGAATCGGGAATCTCTAG
EV572592       <-- aatcgGAGAGAGAGAGTCTGAAAATTGCAGTGCGAATCGGGAATCTCTAG
EV574324       <-- aatcgGAGAGAGAGAGTCTGAAAATTGCAGTGCGAATCGGGAATCTCTAG
EX774878       <-- aatcgGAGAGAGAGAGTCTGAAAATTGCAGTACGAATCGGGAATCTCTAG
EW730889       <-- gaaatcgGAGAGAGAGTCTGAAAATTGCAGTGCGAATCGGGAATCTCTAG
FD944011       <-- ......gGAGAGAGAGTCTGAAAATTGCAGTGCGAATCGGGAATCTCTAG
EV549653       --> AGAGAGAGAGAGAGAGTCTGAAAATTGCAGTGCGAATCGGGAATCTCTAG
FD532767       --> ---GAGAGAGAGAGAGTCTGAAAATTGCAGTGCGAATCGGGAATCTCTAG
EV567711       --> aatcgGAGAGAGAGAGTCTGAAAATTGCAGTGCGAATCGGGAATCTCTAG
EV569885       --> aatcgGAGAGAGAGAGTCTGAAAATTGCAGTGCGAATCGGGAATCTCTAG
EX770730       --> aatcgGAGAGAGAGAGTCTGAAAATTGCAGTACGAATCGGGAATCTCTAG
EW725713       --> gaaatcgGAGAGAGAGTCTGAAAATTGCAGTGCGAATCGGGAATCTCTAG
FD948183       --> ......gGAGAGAGAGTCTGAAAATTGCAGTGCGAATCGGGAATCTCTAG
EY905709       --> .....ggggggGAGAGTCTGAAAATTGCAGTGCGAATCGGGAATCTCTAG

               101    -    151
UN21707        --> GTTTT-GTAGAAAATGGGTGGCGGAGGAGGTATAACATACAAAGGAGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545082       <-- GTTTTTGTAGAAAATGGGTGGCGGAGGAGGTATAACATACAAGGGAGTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572592       <-- GTTTT-GTAGAAAATGGGTGGCGGAGGATGTATAACATACAAAGGAGTCA  Raphanus raphanistrum subsp. landra
EV574324       <-- GTTTT-GTAGAAAATGGGTGGCGGAGGAGGTATAACATACAAAGGAGTCA  Raphanus raphanistrum subsp. landra
EX774878       <-- GTTTT-GTAGAAAATGGGTGGCGGAGGAGGTATAACATACAAAGGAGTCA  Raphanus raphanistrum subsp. landra
EW730889       <-- GTTTT-GTAGAAAATGGGTGGCGGAGGAGGTATAACATACAAAGGAGTCA  Raphanus sativus cv Early Scarlet Globe
FD944011       <-- GTTTT-GTAGAAAATGGGTGGCGGAGGAGGTATAACATACAAAGGAGTCA  Raphanus sativus cv Early Scarlet Globe
EV549653       --> GTTTTTGTAGAAAATGGGTGGCGGAGGAGGTATAACATACAAGGGAGTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532767       --> GTTTT-GTAGAAAATGGGTGGAGGCGGAGGTATAACATACAAGGGAGTCA  Raphanus raphanistrum subsp. maritimus
EV567711       --> GTTTT-GTAGAAAATGGGTGGCGGAGGATGTATAACATACAAAGGAGTCA  Raphanus raphanistrum subsp. landra
EV569885       --> GTTTT-GTAGAAAATGGGTGGCGGAGGAGGTATAACATACAAAGGAGTCA  Raphanus raphanistrum subsp. landra
EX770730       --> GTTTT-GTAGAAAATGGGTGGCGGAGGAGGTATAACATACAAAGGAGTCA  Raphanus raphanistrum subsp. landra
EW725713       --> GTTTT-GTAGAAAATGGGTGGCGGAGGAGGTATAACATACAAAGGAGTCA  Raphanus sativus cv Early Scarlet Globe
FD948183       --> GTTTT-GTAGAAAATGGGTGGCGGAGGAGGTATAACATACAAAGGAGTCA  Raphanus sativus cv Early Scarlet Globe
EY905709       --> GTTTT-GTAGAAAATGGGTGGCGGAGGAGGTATAACATACAAGGGAATCA  Raphanus raphanistrum subsp. raphanistrum (MS)

               151    -    201
UN21707        --> CTGTTCACACTCCCAAGACATGGCACACCGTCGCCGGAAAGGGCTTGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545082       <-- CTGTTCACACTCCCAAGACGTGGCACACCGTCGCCGGAAAGGGCTTGTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572592       <-- CTGTTCACACTCCCAAGACATGGCACACCGTCGCCGGAAAGGGCTTGTGC  Raphanus raphanistrum subsp. landra
EV574324       <-- CTGTTCACACTCCCAAGACATGGCACACCGTCGCCGGAAAGGGCTTGTGC  Raphanus raphanistrum subsp. landra
EX774878       <-- CTGTTCACACTCCCAAGACATGGCACACCGTCGCCGGAAAGGGCTTGTGC  Raphanus raphanistrum subsp. landra
EW730889       <-- CTGTTCACACTTCCAAGACATGGCACACCGTCGCCGGAAAGGGCTTGTGC  Raphanus sativus cv Early Scarlet Globe
FD944011       <-- CTGTTCACACTCCCAAGACATGGCACACCGTCGCCGGAAAGGGCTTGTGC  Raphanus sativus cv Early Scarlet Globe
EV549653       --> CTGTTCACACTCCCAAGACGTGGCACACCGTCGCCGGAAAGGGCTTGTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532767       --> CTGTTCACACTCCCAAGACGTGGCACACCGTCGCCGGAAAGGGCTTGTGC  Raphanus raphanistrum subsp. maritimus
EV567711       --> CTGTTCACACTCCCAAGACATGGCACACCGTCGCCGGAAAGGGCTTGTGC  Raphanus raphanistrum subsp. landra
EV569885       --> CTGTTCACACTCCCAAGACATGGCACACCGTCGCCGGAAAGGGCTTGTGC  Raphanus raphanistrum subsp. landra
EX770730       --> CTGTTCACACTCCCAAGACATGGCACACCGTCGCCGGAAAGGGCTTGTGC  Raphanus raphanistrum subsp. landra
EW725713       --> CTGTTCACACTTCCAAGACATGGCACACCGTCGCCGGAAAGGGCTTGTGC  Raphanus sativus cv Early Scarlet Globe
FD948183       --> CTGTTCACACTCCCAAGACATGGCACACCGTCGCCGGAAAGGGCTTGTGC  Raphanus sativus cv Early Scarlet Globe
EY905709       --> CTGTTCACACTCCCAAGATGTGGCACACCGTCGCCGGAAAGGGCTTGTGC  Raphanus raphanistrum subsp. raphanistrum (MS)

               201    -    251
UN21707        --> GGCGTTATGTGGTTTTGGATTTTGTACAGGGCAAAGCAAGATGGTCCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545082       <-- GGCGTTATGTGGTTTTGGATTCTGTACAGGGCAAAGCAAGATGGTCCTGT
EV572592       <-- GGCGTTATGTGGTTTTGGATTTTGTACAGGGCAAAGCAAGATGGTCCTGT
EV574324       <-- GGCGTTATGTGGTTTTGGATTTTGTACAGGGCAAAGCAAGATGGTCCTGT
EX774878       <-- GGCGTTATGTGGTTTTGGATTTTGTACAGGGCAAAGCAAGATGGTCCTGT
EW730889       <-- GGCGTTATGTGGTTTTGGATTTTGTACAGGGCAAAGCAAGATGGTCCTGT
FD944011       <-- GGCGTTATGTGGTTTTGGATTTTGTACAGGGCAAAGCAAGATGGTCCTGT
EV549653       --> GGCGTTATGTGGTTTTGGATTCTGTACAGGGCAAAGCAAGATGGTCCTGT
FD532767       --> GGCGTTATGTGGTTTTGGATTTTGTACAGGGCAAAGCAAGATGGTCCTGT
EV567711       --> GGCGTTATGTGGTTTTGGATTTTGTACAGGGCAAAGCAAGATGGTCCTGT
EV569885       --> GGCGTTATGTGGTTTTGGATTTTGTACAGGGCAAAGCAAGATGGTCCTGT
EX770730       --> GGCGTTATGTGGTTTTGGATTTTGTACAGGGCAAAGCAAGATGGTCCTGT
EW725713       --> GGCGTTATGTGGTTTTGGATTTTGTACAGGGCAAAGCAAGATGGTCCTGT
FD948183       --> GGCGTTATGTGGTTTTGGATTTTGTACAGGGCAAAGCAAGATGGTCCTGT
EY905709       --> GGCGTTATGTGGTTTTGGATTCTGTACAGAGCAAAGCAAGATGGTCCTGT

               251    -    301
UN21707        --> AGTCATGGGATGGAGGCACCCGTGGGATGGCCATGGTGATCATGGTCACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545082       <-- AGTCATGGGATGGAGGCACCCATGGGATGGCCATGGTGATCATGGTCACG
EV572592       <-- AGTCATGGGATGGAGGCACCCGTGGGATGGCCATGGTGATCATGGTCACG
EV574324       <-- AGTCAAGGGATGGAGGCACCCGTGGGATGGCCATGGTGATCATGGTCACG
EX774878       <-- AGTCATGGGATGGAGGCACCCGTGGGATGGCCATGGTGATCATGGTCACG
EW730889       <-- AGTCATGGGATGGAGGCACCCGTGGGATGGCCATGGTGATCATGGTCACA
FD944011       <-- AGTCATGGGATGGAGGCACCCGTGGGATGGCCATGGTGATCATGGTCACG
EV549653       --> AGTCATGGGATGGAGGCACCCATGGGATGGCCATGGTGATCATGGTCACG
FD532767       --> AGTCATGGGATGGAGGCACCCGTGGGATGGCCATGGTGATCATGGTCACG
EV567711       --> AGTCATGGGATGGAGGCACCCGTGGGATGGCCATGGTGATCATGGTCACG
EV569885       --> AGTCAAGGGATGGAGGCACCCGTGGGATGGCCATGGTGATCATGGTCACG
EX770730       --> AGTCATGGGATGGAGGCACCCGTGGGATGGCCATGGTGATCATGGTCACG
EW725713       --> AGTCATGGGATGGAGGCACCCGTGGGATGGCCATGGTGATCATGGTCACA
FD948183       --> AGTCATGGGATGGAGGCACCCGTGGGATGGCCATGGTGATCATGGTCACG
EY905709       --> AGTCATGGGATGGAGGCACCCATGGGATGGCCATGGTGATCATGGTCACG

               301    -    351
UN21707        --> GAGATCATCACTAGGTCTCGTCGAACCTTCGAAGATCTTGGCGAAAAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545082       <-- GAGATCATCACTAGGTCTCGTCGAACCTTCGAAGATCATGGCGAAAAAAT
EV572592       <-- GAGATCATCACTAGGTCTCGTCGAACCTTCGAAGATCTTGGCGAAAAAAT
EV574324       <-- GAGATCGTCACTAGGTCTCGTCGAACCTTCGAAGATCTTGGCGAAAAAAT
EX774878       <-- GAGATCATCACTAGGTCTCGTCGAACCTTCGAAGATCTTGGCGAAAAAAT
EW730889       <-- GAGATCATCACTAGGTCTCGTCGAACCTTCGAAGATCTTGGCGAAAAAAT
FD944011       <-- GAGATCATCACTAGGTCTCGTCGAACCTTCGAAGATCTTGGCGAAAAAAT
EV549653       --> GAGATCATCACTAGGTCTCGTCGAACCTTCGAAGATCATGGCGAAAAAAT
FD532767       --> GAGATCATCACTAGGTCTCGTCGAACCTTCGAAGATCTTGGCGAAAAAAT
EV567711       --> GAGATCATCACTAGGTCTCGTCGAACCTTCGAAGATCTTGGCGAAAAAAT
EV569885       --> GAGATCGTCACTAGGTCTCGTCGAACCTTCGAAGATCTTGGCGAAAAAAT
EX770730       --> GAGATCATCACTAGGTCTCGTCGAACCTTCGAAGATCTTGGCGAAAAAAT
EW725713       --> GAGATCATCACTAGGTCTCGTCGAACCTTCGAAGATCTTGGCGAAAAAAT
FD948183       --> GAGATCATCACTAGGTCTCGTCGAACCTTCGAAGATCTTGGCGAAAAAAT
EY905709       --> GAGATCATCACTAGGTCTCGTCGAACCTTCGAAGATCATGGCGAAAAA-T

               351    -    401
UN21707        --> GTACGTCTCTTTTTTTTT--C-TTCTTTTCAGCTTCAGTATGTCGAAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545082       <-- GTACGTCTCTTTTTTTTT----TTCTTTTCAGCTTCAATATGTCGAAATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572592       <-- GTACGTCTCTTTTTTTTT--CCTTCTTTTCAGCTTCAGTATGTCGAAATA  Raphanus raphanistrum subsp. landra
EV574324       <-- GTACGTCTCTTTTTTTTC--C-TTCTTTTCAGCTTCAGTATGTCGAAATA  Raphanus raphanistrum subsp. landra
EX774878       <-- GTACGTCTCTTTTTTTTT--CCTTCTTTTCAGCTTCAGTATGTCGAAATA  Raphanus raphanistrum subsp. landra
EW730889       <-- GTACGTCTCTTTTTTT-C--C-TTCTTTTCAGCTTCAGTATGTCGAAATA  Raphanus sativus cv Early Scarlet Globe
FD944011       <-- GTACGTCTCTTTTTTTTC--C-TTCTTTTCAGCTTCAGTATGTCGAAATA  Raphanus sativus cv Early Scarlet Globe
EV549653       --> GTACGTCTCTTTTTTTTT----TTCTTTTCAGCTTCAATATGTCGAAATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532767       --> GTACGTCTCTTTTTTTTTTCC-TTCTTTTCAGCTTCAGTATGTCGAAATA  Raphanus raphanistrum subsp. maritimus
EV567711       --> GTACGTCTCTTTTTTTTT--CCTTCTTTTCAGCTTCAGTATGTCGAAATA  Raphanus raphanistrum subsp. landra
EV569885       --> GTACGTCTCTTTTTTTTC--C-TTCTTTTCAGCTTCAGTATGTCGAAATA  Raphanus raphanistrum subsp. landra
EX770730       --> GTACGTCTCTTTTTTTTT--CCTTCTTTTCAGCTTCAGTATGTCGAAATA  Raphanus raphanistrum subsp. landra
EW725713       --> GTACGTCTCTTTTTTT-C--C-TTCTTTTCAGCTTCAGTATGTCGAAATA  Raphanus sativus cv Early Scarlet Globe
FD948183       --> GTACGTCTCTTTTTTTTC--C-TTCTTTTCAGCTTCAGTATGTCGAAATA  Raphanus sativus cv Early Scarlet Globe
EY905709       --> GTACGTCTCTTTTTTTTT--C-TTCTTTTCAGCTTCAATATGTCGAAATA  Raphanus raphanistrum subsp. raphanistrum (MS)

               401    -    451
UN21707        --> AAGATAA-CTGTGAAAGAAGACATCAATTGTTTTTGTACACAGCTTTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545082       <-- AAGATAA-CTGTGAAAGAAGACATCAATTGTTTTTGTACACAGCTTTTGT
EV572592       <-- AAGATAA-CTGTGAAATAAGACATCAATTGTTTTTGTACACAGCTTTTGT
EV574324       <-- AAGATAA-CTGTGAAAGAAGACATCAATTGTTTTTGTACACAGCTTTTGT
EX774878       <-- AAGATAA-CTGTGAAAGAAGACATCAATTGTTTTTGTACACAGCTTTTGT
EW730889       <-- AAGATAA-CTGTGAAAGAAGACATCAATTGTTTTTGTACACAGCTTTTGT
FD944011       <-- AAGATAA-CTGTGAAAGAAGACATCAATTGTTTTTGTACACAGCTTTTGT
EV549653       --> AAGATAA-CTGTGAAAGAAGACATCAATTGTTTTTGTACACAGCTTTTGT
FD532767       --> AAGATAA-CTGTGAAAGAAGACATCAATTGTTTTTGTACACAGCTTTTGT
EV567711       --> AAGATAA-CTGTGAAATAAGACATCAATTGTTTTTGTACACAGCTTTTGT
EV569885       --> AAGATAA-CTGTGAAAGAAGACATCAATTGTTTTTGTACACAGCTTTTGT
EX770730       --> AAGATAA-CTGTGAAAGAAGACATCAATTGTTTTTGTACACAGCTTTTGT
EW725713       --> AAGATAA-CTGTGAAAGAAGACATCAATTGTTTTTGTACACAGCTTTTGT
FD948183       --> AAGATAA-CTGTGAAAGAAGACATCAATTGTTTTTGTACACAGCTTTTGT
EY905709       --> AAGATAAACTGTGAAAGTAGACATCAATTGTTTTTGTACACAGCTTTTGT

               451    -    501
UN21707        --> AAGACTTGCTGCTTTTGTCTTAAGTTGCTACTTGGATTGCACTTCACTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545082       <-- AAGACTTGCTGCTTTTGTCTTAAGTTGCTACTTGGATTGCACTTCACTcc
EV572592       <-- AAGACTTGCTGCTTTTGTCTTAAGTTGCTACTTGGATTGCACTTCACTTC
EV574324       <-- AAGACTTGCTGCTTTTGTCTTAAGTTGCTACTTGGATTGCACTTCACTTC
EX774878       <-- AAGACTTGCTGCTTTTGTCTTAAGTTGCTACTTGGATTGCACTTCACTTC
EW730889       <-- AAGACTTGCTGCTTTTGTCTTAAGTTGCTACTTGGATTGCACTac.....
FD944011       <-- AAGACTTGCTGCTTTTGTCTTAAGTTGCTACTTGGATTGCACTTCACTTC
EV549653       --> AAGACTTGCTGCTTTTGTCTTAAGTTGCTACTTGGATTGCACTTCACTcc
FD532767       --> AAGACTTGCTGCTTTTGTCTTAAGTTGCTACTTGGATTGCACTT......
EV567711       --> AAGACTTGCTGCTTTTGTCTTAAGTTGCTACTTGGATTGCACTTCACTTC
EV569885       --> AAGACTTGCTGCTTTTGTCTTAAGTTGCTACTTGGATTGCACTTCACTTC
EX770730       --> AAGACTTGCTGCTTTTGTCTTAAGTTGCTACTTGGATTGCACTTCACTTC
EW725713       --> AAGACTTGCTGCTTTTGTCTTAAGTTGCTACTTGGATTGCACTac.....
FD948183       --> AAGACTTGCTGCTTTTGTCTTAAGTTGCTACTTGGATTGCACTTCACTTC
EY905709       --> AAGACTTGCTGCTTTTGTCTTAAGTTGCTACTTGGATTGCACTTCACTTC

               501    -    551
UN21707        --> GTTGATGTTTTTTACGTCTACAAATGAATTTAAACGGTTATGGTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545082       <-- ...............................................
EV572592       <-- GTTGATGTTTTTTACGTCTACAAATGAA...................
EV574324       <-- GTTGATGTTTTTTACGTCTACAAATGAA...................
EX774878       <-- GTTGATGTTTTTTACGTCTACAAATGAA...................
EW730889       <-- ...............................................
FD944011       <-- GTTGATGTTTTTTACGTCTACAAATGAATTT................
EV549653       --> ...............................................
FD532767       --> ...............................................
EV567711       --> GTTGATGTTTTTTACGTCTACAAATGAA...................
EV569885       --> GTTGATGTTTTTTACGTCTACAAATGAA...................
EX770730       --> GTTGATGTTTTTTACGTCTACAAATGAA...................
EW725713       --> ...............................................
FD948183       --> GTTGATGTTTTTTACGTCTACAAATGAATTT................
EY905709       --> CTTGATGTTTTTTACGTCTACAAATGAATTTAAACGGTTATGGTTCC