-1     -     49
UN21720        --> ..AATCATTGATCATCGCACATAAAATTCCAAACTTCAAAGGAAACCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- ..................................................
EV546181       <-- ..................................................
EV542533       <-- ..................................................
EY933987       <-- ..................................................
EX899315       <-- ..................................................
EW721402       <-- ..................................................
FD935206       <-- ..................................................
FD984035       <-- ..................................................
EW720619       <-- ..................................................
EY917454       <-- ..................................................
EW728927       <-- ..................................................
EY935435       <-- ..................................................
EW717399       --> gcAATCATTGATCATCGCACACAAAATTCCAAACTTCAAAGGAAACCAGT
EV550998       --> .....gATTGATCATCGCACATAAAATTCCAAACTTCAAAGGAAACCATT
EV538551       --> ...........................ggaAAACTTCAAAGGAAACCAGT
EV550909       --> .................................................g
FD938974       --> ................................................gg
EW718113       --> ..................................................
EX765524       --> ..................................................

               49     -     99
UN21720        --> GAGCTCAAGAAAAGTCTCTCTACCTTTCTCCATATTTCTCCTCTTCATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- ....ggAAGAAAAGTCTCTCTACCTTTCTCCATATTTCTCCTCTTCATTC
EV546181       <-- ..................................................
EV542533       <-- ..................................................
EY933987       <-- ..................................................
EX899315       <-- ..................................................
EW721402       <-- ..................................................
FD935206       <-- ..................................................
FD984035       <-- ..................................................
EW720619       <-- ..................................................
EY917454       <-- ..................................................
EW728927       <-- ..................................................
EY935435       <-- ..................................................
EW717399       --> GAGCTCAAGAAAAGTCTCTCTACCTTTCTCCATATTTCTCCTCTTCATTC
EV550998       --> GAGCTCAAGAAAAGTCTCTCTACCTTTCTCCATATTTCTCCTCTTCATTC
EV538551       --> GAGCTCAAGAAGAGTCTCTCTACCTTTCTCCATATTTCTCCTCTTCATTC
EV550909       --> GAGCTCAAGAAAAGTCTCTCTACCTTTCTCCATATTTCTCCTCTTCATTC
FD938974       --> GAGCTCAAGAAAAGTCTCTCTACCTTTCTTCATATTTCTCCTCTTCATTC
EW718113       --> ....ggAAGAAAAGTCTCTCTACCTTTCTCCATATTTCTCCTCTTCATTC
EX765524       --> ..................................................

               99     -    149
UN21720        --> AGATTCTTTCCTATAAGCTTGCGTTTCTTGATTCTTGATT-------ATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- AGATTCTTTCCTATAAGCTTGCGTTTCTTGATTCTTGATT-------ATG
EV546181       <-- .....................................ATT-------ATG
EV542533       <-- ..................................................
EY933987       <-- ..................................................
EX899315       <-- ..................................................
EW721402       <-- ..................................................
FD935206       <-- ..................................................
FD984035       <-- ..................................................
EW720619       <-- ..................................................
EY917454       <-- ..................................................
EW728927       <-- ..................................................
EY935435       <-- ..................................................
EW717399       --> AGATTCTTTCCTATAAGCTTGCGTTTCTTGATTCTTGATT-------ATG
EV550998       --> AGATTCTTTCCTATAAGCTTGCGTTTCTTGATTCTTGATTCTTGATTATG
EV538551       --> AGATTCTTTCCTATAATCTTGCGTTTCTTGATTCTTGACT-------ATG
EV550909       --> AGATTCTTTCCTATAAGCTTGCGTTTCTTGATTCTTGATTCTTGATTATG
FD938974       --> AGATTCTTTCCTATAAGCTTGCGTTTCTTGATTCTTGATT-------ATG
EW718113       --> AGATTCTTTCCTATAAGCTTGCGTTTCTTGATTCTTGATT-------ATG
EX765524       --> ..................................................

               149    -    199
UN21720        --> ACACTGAGCAAGAGATCTCATCTAATGATCCGAAAGTTGTCGGAGATGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- ACACTGAGCAAGAGATCTCATCTAATGATCCGAAAGTTGTCGGAGATGTT
EV546181       <-- ACACTGAGCAAGAGATCTCATCTAATGATCCGAAAGTTGTCGGAGATGTT
EV542533       <-- ..................................................
EY933987       <-- ..................................................
EX899315       <-- ..................................................
EW721402       <-- ..................................................
FD935206       <-- ..................................................
FD984035       <-- ..................................................
EW720619       <-- ..................................................
EY917454       <-- ..................................................
EW728927       <-- ..................................................
EY935435       <-- ..................................................
EW717399       --> ACACTGAGCAAGAGATCTCATCTAATGATCCGAAAGTTGTCGGAGATGTT
EV550998       --> ACACTGAGCAAGAGATCTCATCTAATGATCCGAAAGTTGTCGGAGATGTT
EV538551       --> ACACTAAGCAAGGGATCTCATCTAATGATCCGAAAGTTGTCGGAGATGTT
EV550909       --> ACACTGAGCAAGAGATCTCATCTAATGATCCGAAAGTTGTCGGAGATGTT
FD938974       --> ACACTGAGCAAGAGATCTCATCTAATGATCCGAAAGTTGTCGGAGATGTT
EW718113       --> ACACTGAGCAAGAGATCTCATCTAATGATCCGAAAGTTGTCGGAGATGTT
EX765524       --> ..................................................

               199    -    249
UN21720        --> GGTTCCGGGAAGAAGATCTGCTACCAAACGGGAAGATTCCTCGGCGAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- GGTTCCGGGAAGAAGATCTGCTACCAAACGGGAAGATTCCTCGGCGAGTC
EV546181       <-- GGTTCCGGGAAGAAGATCTGCTACCAAACGGGAAGATTCCTCGGCGAGTC
EV542533       <-- ....CCGGGAAGAAGATCTGCTACCAAACGGGAAGATTCCTCGGCGAGTC
EY933987       <-- .......................CCAAACGGGAAGATTCCTCGGCGAGTC
EX899315       <-- ............................CGGGAAGATTCCTCGGCGAGTC
EW721402       <-- ................................AAGAT-CCTCG-CGAGTC
FD935206       <-- .....................................TCCTCGGCGAGTC
FD984035       <-- ..............................................AGTC
EW720619       <-- ..................................................
EY917454       <-- ..................................................
EW728927       <-- ..................................................
EY935435       <-- ..................................................
EW717399       --> GGTTCCGGGAAGAAGATCTGCTACCAAACGGGAAGATTCCTCGGCGAGTC
EV550998       --> GGTTCCGGGAAGAAGATCTGCTACCAAACGGGAAGATTCCTCGGCGAGTC
EV538551       --> GGTTCCGGGAAGAAGATCTGCTACCAAACGGGAAGATTCCTCGGCGAGTC
EV550909       --> GGTTCCGGGAAGAAGATCTGCTACCAAACGGGAAGATTCCTCGGCGAGTC
FD938974       --> GGTTCCGGGAAGAAGATCTGCTACCAAACGGGAAGATTCCTCGGCGAGTC
EW718113       --> GGTTCCGGGAAGAAGATCTGCTACCAAACGGGAAGATTCCTCGGCGAGTC
EX765524       --> ..................................................

               249    -    299
UN21720        --> CGAGGAGTCCGTTAGATATGAAATTCCCCTCGCCGGTTAACTCGAAACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- CGAGGAGTCCGTTAGATATGAAATTCCCCTCGCCGGTTAACTCGAAACGG  Raphanus sativus var. oleiformis
EV546181       <-- CGAGGAGTCCGTTAGATATGAAATTCCCCTCCCCGGTTACCTCGAAACGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542533       <-- CGAGGAGTCCGTTAGATATGAAATTCCCCTCCCCGGTTACCTCGAAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY933987       <-- CGAGGAGTCCGTTAGATATGAAATTCCCCTCGCCGGTTAACTCGATACGG  Raphanus sativus cv Early Scarlet Globe
EX899315       <-- CGAGGAGTCCGTTAGATATGAAATTCCCCTCGCCGGTTAACTCGAAACGA  Raphanus sativus cv Early Scarlet Globe
EW721402       <-- CGAGGAGTCCGTTAGATATGAAAT-CCCCTCGC-GGTTA-CTCGAAACGG  Raphanus sativus var. oleiformis
FD935206       <-- CGAGGAGTCCGTTAGATATGAAATTCCCCTCGCCGGTTAACTCGAAACGG  Raphanus sativus var. oleiformis
FD984035       <-- CGAGGAGTCCGTTAGATATGAAATTCCCCTCGCCGGTTAACTCGAAACGG  Raphanus raphanistrum subsp. landra
EW720619       <-- ............................................AAACGG  Raphanus sativus var. oleiformis
EY917454       <-- ............................................AAACGG  Raphanus raphanistrum subsp. landra
EW728927       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY935435       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW717399       --> CGAGGAGTCCGTTAGATATGAAATTCCCCTCGCCGGTTAACTCGAAACGG  Raphanus sativus var. oleiformis
EV550998       --> CGAGGAGTCCGTTAGATATGAAATTCCCCTCCCCGGTTACCTCGAAACGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538551       --> CGAGGAGTCCGTTAGATATGAAATTCCCCTCCCCGGTTACCTCGAAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV550909       --> CGAGGAGTCCGTTAGATATGAAATTCCCCTCCCCGGTTACCTCGAAACGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD938974       --> CGAGGAGTCCGTTAGATATGAAATTCCCCTCGCCGGTTAACTCGAAACGG  Raphanus sativus var. oleiformis
EW718113       --> CGAGGAGTCCGTTAGATATGAAATTCCCCTCGCCGGTTAACTCGAAACGG  Raphanus sativus var. oleiformis
EX765524       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               299    -    349
UN21720        --> TACAGCTCCGGTGGTATCGGTTTAGGTATCGTCGCTGCGTTGGAGGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- TACAGCTCCGGTGGTATCGGTTTAGGTATCGTCGCTGCGTTGGAGGAAAG
EV546181       <-- TACAGCTCCGGTGGTATCGGTTTAGGTATCGTCGCTGCGTTGGAGGAAAG
EV542533       <-- TACAGCTCCGGTGGTATCGGTTTAGGTATCGTCGCTGCGTTGGAGGAAAG
EY933987       <-- TACAGCTCCGGTGGTATCGGTTTAGGTATCGTCGCTGCGTTGGAGGAAAG
EX899315       <-- TACAGCTCCGGTGGTATCGGTTTAGGTATCGTCGCTGCGTTGGAGGAAAG
EW721402       <-- TACAGCTCCGGTGGTATCGGTTTAGGTATCGTCGCTGCGTTGGAGGAAAG
FD935206       <-- TACAGCTCCGGTGGTATCGGTTTAGGTATCGTCGCTGCGTTGGAGGAAAG
FD984035       <-- TACAGCTCCGGTGGTATCGGTTTAGGTATCGTCGCTGCGTTGGAGGAAAG
EW720619       <-- TACAGCTCCGGTGGTATCGGTTTAGGTATCGTCGCTGCGTTGGAGGAAAG
EY917454       <-- TACAGCTCCGGTGGTATCGGTTTAGGTATCGTCGCTGCGTTGGAGGAAAG
EW728927       <-- ..................................................
EY935435       <-- ..................................................
EW717399       --> TACAGCTCCGGTGGTATCGGTTTAGGTATCGTCGCTGCGTTGGAGGAAAG
EV550998       --> TACAGCTCCGGTGGTATCGGTTTAGGTATCGTCGCTGCGTTGGAGGAAAG
EV538551       --> TACAGCTCCGGTGGTATCGGTTTAGGTATCGTCGCTGCGTTGGAGGAAAG
EV550909       --> TACAGCTCCGGTGGTATCGGTTTAGGTATCGTCGCTGCGTTGGAGGAAAG
FD938974       --> TACAGCTCCGGTGGTATCGGTTTAGGTATCGTCGCTGCGTTGGAGGAAAG
EW718113       --> TACAGCTCCGGTGGTATCGGTTTAGGTATCGTCGCTGCGTTGGAGGAAAG
EX765524       --> ..................................................

               349    -    399
UN21720        --> TAACCGGTACGATCCGGTTTGCTACTCCGGGAGATTCCGGTGCCCTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- TAACCGGTACGATCCGGTTTGCTACTCCGGGAGATTCCGGTGCCCTGAGA
EV546181       <-- TAACCGGTACGATCCGGTTTGCTACTCCGGGAGATTCCGGTGCCCTGAGA
EV542533       <-- TAACCGGTACGATCCGGTTTGCTACTCCGGGAGATTCCGGTGCCCGGAGA
EY933987       <-- TAACCGGTACGATCCGGTTTGCTACTCCGGGAGATTCCGGTGCCCTGAGA
EX899315       <-- TAACCGGTACGATCCGGTTTGCTACTCCGGGAGATTCCGGTGCCCTGAGA
EW721402       <-- TAACCGGTACGATCCGGTTTGCTACTCCGGGAGATTCCGGTGCCCTGAGA
FD935206       <-- TAACCGGTACGATCCGGTTTGCTACTCCGGGAGATTCCGGTGCCCTGAGA
FD984035       <-- TAACCGGTACGATCCGGTTTGCTACTCCGGGAGATTCCGGTGCCCTGAGA
EW720619       <-- TAACCGGTACGATCCGGTTTGCTACTCCGGGAGATTCCGGTGCCCTGAGA
EY917454       <-- TAACCGGTACGATCCGGTTTGCCACTCCGGGAGATTCCGGTGCCCTGAGA
EW728927       <-- ..............CGGTTTGCTACTCCGGGAGATTCCGGTGCCCTGAGA
EY935435       <-- ..................................................
EW717399       --> TAACCGGTACGATCCGGTTTGCTACTCCGGGAGATTCCGGTGCCCTGAGA
EV550998       --> TAACCGGTACGATCCGGTTTGCTACTCCGGGAGATTCCGGTGCCCTGAGA
EV538551       --> TAACCGGTACGATCCGGTTTGCTACTCCGGGAGATTCCGGTGCCCGGAGA
EV550909       --> TAACCGGTACGATCCGGTTTGCTACTCCGGGAGATTCCGGTGCCCTGAGA
FD938974       --> TAACCGGTACGATCCGGTTTGCTACTCCGGGAGATTCCGGTGCCCTGAGA
EW718113       --> TAACCGGTACGATCCGGTTTGCTACTCCGGGAGATTCCGGTGCCCTGAGA
EX765524       --> ..................................................

               399    -    449
UN21720        --> TCGATCTGTCGGATGAGGAATACACTTACGTGACTAGCCCTGGTGGGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- TCGATCTGTCGGATGAGGAATACACTTACGTGACGAGCCCTGGTGGGCCG  Raphanus sativus var. oleiformis
EV546181       <-- TCGATCTGTCGTATGAGGAATACACTTACGTGACTAGCCCTGGTGGGCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542533       <-- TCGATCTGTCGGATGAGGAATACACTTACGTGACTAGCCCTGGTGGGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY933987       <-- TCGATCTGTCGGATGAGGAATACACTTACGTGACTAGCCCTGGTGGGCCG  Raphanus sativus cv Early Scarlet Globe
EX899315       <-- TCGATCTGTCGGATGAGGAATACACTTACGTGACTAGCCCTGGTGGGCCG  Raphanus sativus cv Early Scarlet Globe
EW721402       <-- TCGATCTGTCGGATGAGGAATACACTTACGTGACGAGCCCTGGTGGGCCG  Raphanus sativus var. oleiformis
FD935206       <-- TCGATCTGTCGGATGAGGAATACACTTACGTGACGAGCCCTGGTGGGCCG  Raphanus sativus var. oleiformis
FD984035       <-- TCGATCTGTCGGATGAGGAATACACTTACGTGACTAGCCCTGG-GGGCCG  Raphanus raphanistrum subsp. landra
EW720619       <-- TCGATCTGTCGGATGAGGAATACACTTACGTGACGAGCCCTGGTGGGCCG  Raphanus sativus var. oleiformis
EY917454       <-- TCGATCTGTCGGATGAGGAATACACTTACGTGACTAGCCCTGGTGGGCCG  Raphanus raphanistrum subsp. landra
EW728927       <-- TCGATCTGTCGGATGAGGAATACACTTACGTGACTAGCCCTGGTGGGCCG  Raphanus sativus cv Early Scarlet Globe
EY935435       <-- ......................CACTTACGTGACTAGCCCTGGTGGGCCG  Raphanus sativus cv Early Scarlet Globe
EW717399       --> TCGATCTGTCGGATGAGGAATACACTTACGTGACGAGCCCTGGTGGGCCG  Raphanus sativus var. oleiformis
EV550998       --> TCGATCTGTCGTATGAGGAATACACTTACGTGACTAGCCCTGGTGGGCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538551       --> TCGATCTGTCGGATGAGGAATACACTTACGTGACTAGCCCTGGTGGGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV550909       --> TCGATCTGTCGGATGAGGAATACACTTACTTGACTAGCCCTGGTGGGCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD938974       --> TCGATCTGTCGGATGAGGAATACACTTACGTGACGAGCCCTGGTGGGCCG  Raphanus sativus var. oleiformis
EW718113       --> TCGATCTGTCGGATGAGGAATACACTTACGTGACGAGCCCTGGTGGGCCG  Raphanus sativus var. oleiformis
EX765524       --> ...........GATGAGGAATACACTTACGTGACTAGCCCTGGTGGGCCG  Raphanus raphanistrum subsp. raphanistrum (NY)

               449    -    499
UN21720        --> ACCAAAGTGTATTACAGTGACGAGGGGTTTGAACTGTTTGAAAATGGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- ACCAAAGTGTATTACAGTGACGAGGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus sativus var. oleiformis
EV546181       <-- ACCAAAGTGTATTACAGTGACGATGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542533       <-- ACCAAAGTGTATTACAGTGACGATGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY933987       <-- ACCAAAGTGTATTACAGTGATGAGGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus sativus cv Early Scarlet Globe
EX899315       <-- ACCAAAGTGTATTACAGTGATGAGGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus sativus cv Early Scarlet Globe
EW721402       <-- ACCAAAGTGTATTACAGTGACGAGGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus sativus var. oleiformis
FD935206       <-- ACCAAAGTGTATTACAGTGACGAGGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus sativus var. oleiformis
FD984035       <-- ACCAAAGTGTATTACAGTGATGAGGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus raphanistrum subsp. landra
EW720619       <-- ACCAAAGTGTATTACAGTGACGAGGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus sativus var. oleiformis
EY917454       <-- ACCAAAGTGTATTACAGTGATGAGGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus raphanistrum subsp. landra
EW728927       <-- ACCAAAGTGTATTACAGTGATGAGGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus sativus cv Early Scarlet Globe
EY935435       <-- ACCAAAGTGTATTACAGTGATGAGGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus sativus cv Early Scarlet Globe
EW717399       --> ACCAAAGTGTATTACAGTGACGAGGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus sativus var. oleiformis
EV550998       --> ACCAAAGTGTATTACAGTGACGATGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538551       --> ACCAAAGTGTATTACAGTGACGATGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV550909       --> ACCAAAGTGTATTACAGTTACGATGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD938974       --> ACCAAAGTGTATTACAGTGACGAGGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus sativus var. oleiformis
EW718113       --> ACCAAAGTGTATTACAGTGACGAGGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus sativus var. oleiformis
EX765524       --> ACCAAAGTGTATTACAGTGACGATGGGTTTGAACTGTTTGAAAATGGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)

               499    -    549
UN21720        --> GGAGTATGATGATCGGAGAAAGCATAAACCGTTGGTTAACCCCGTTGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- GGAGTATGATGATCGGAGAAAGCATAAACCGTTGGTTAACCCCGTTGAAC
EV546181       <-- GGAGTATGATGATCGGAGAAAGCATAAACCGTTGGTTAACCCCGTTGAAC
EV542533       <-- GGAGTATGATGATCGGAGAAAGCATAAACCGTTGGTTAACCCCGTTGAAC
EY933987       <-- GGAGTATGATGATCGGAGGAAGCATAAACCGTTGGTTAATCCCGTTGAAC
EX899315       <-- GGAGTATGATGATCGGAGAAAACATAAACCGTTGGTTAACCCCGTTGAAC
EW721402       <-- GGAGTATGATGATCGGAGAAAGCATAAACCGTTGGTTAACCCCGTTGAAC
FD935206       <-- GGAGTATGATGATCGGAGAAAGCATAAACCGTTGGTTAACCCCGTTGAAC
FD984035       <-- GGAGTATGATGATCGGAGGAAGCATAAACCGTTGGTTAATCCCGTTGAAC
EW720619       <-- GGAGTATGATGATCGGAGAAAGCATAAACCGTTGGTTAACCCCGTTGAAC
EY917454       <-- GGAGTATGATGATCGGAGGAAGCATAAACCGTTGGTTAATCCCGTTGAAC
EW728927       <-- GGAGTATGATGATCGGAGAAAACATAAACCGTTGGTTAACCCCGTTGAAC
EY935435       <-- GGAGTATGATGATCGGAGGAAGCATAAACCGTTGGTTAATCCCGTTGAAC
EW717399       --> GGAGTATGATGATCGGAGAAAGCATAAACCGTTGGTTAACCCCGTTGAAC
EV550998       --> GGAGTATGATGATCGGAGAAAGCATAAACCGTTGGTTAACCCCGTTGAAC
EV538551       --> GGAGTATGATGATCGGAGAAAGCATAAACCGTTGGTTAACCCCGTTGAAC
EV550909       --> GGAGTATGATGATCGTAGAAAGCATAAACCGTTGGTTAACCCCGTTGAAC
FD938974       --> GGAGTATGATGATCGGAGAAAGCATAAACCGTTGGTTAACCCCGTTGAAC
EW718113       --> GGAGTATGATGATCGGAGAAAGCATAAACCGTTGGTTAACCCCGTTGAAC
EX765524       --> GGAGTATGATGATCGGAGAAAGCATAAACCGTTGGTTAACCCCGTTGAAC

               549    -    599
UN21720        --> CACCGGTTATTAAGAGAGAGGTTTTTAGGGAATCGACAGAGTTTCTGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- CACCGGTTATTAAGAGAGAGGCTTTTAGGGAATCGACAGAGTTTCTAAGC  Raphanus sativus var. oleiformis
EV546181       <-- CACCGGTTATTAAGAGAGAGGTTTTTAGGGAATCGACAGAGTTTCTGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542533       <-- CACCGGTTATTAAGAGAGAGGTTTTTAAGGAATCGACAGAGTTTTTGAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY933987       <-- CGCCGGTTATTAAGAGAGAGGTTTTTAGGGAATCGACAGAGTTTTTGAGC  Raphanus sativus cv Early Scarlet Globe
EX899315       <-- CACCGGTTATTAA---------GAGAGAGGAATCGACAGAGTTTCTGAGC  Raphanus sativus cv Early Scarlet Globe
EW721402       <-- CACCGGTTATTAAGAGAGAGGCTTTTAGGGAATCGACAGAGTTTCTAAGC  Raphanus sativus var. oleiformis
FD935206       <-- CACCGGTTATTAAGAGAGAGGCTTTTAGGGAATCGACAGAGTTTCTAAGC  Raphanus sativus var. oleiformis
FD984035       <-- CGCCGGTTATTAAGAGAGAGGTTTTTAGGGAATCGACAGAGTTTCTGAGC  Raphanus raphanistrum subsp. landra
EW720619       <-- CACCGGTTATTAAGAGAGAGGCTTTTAGGGAATCGACAGAGTTTTTAAGC  Raphanus sativus var. oleiformis
EY917454       <-- CGCCGGTTATTAAGAGAGAGGTTTTTAGGGAATCGACAGAGTTTCTGAGC  Raphanus raphanistrum subsp. landra
EW728927       <-- CACCGGTTATTAA---------GAGAGAGGAATCGACAGAGTTTCTGAGC  Raphanus sativus cv Early Scarlet Globe
EY935435       <-- CGCCGGTTATTAAGAGAGAGGTTTTTAGGGAATCGACAGAGTTTCTGAGC  Raphanus sativus cv Early Scarlet Globe
EW717399       --> CACCGGTTATTAAGAGAGAGGCTTTTAGGGAATCGACAGAGTTTCTAAGC  Raphanus sativus var. oleiformis
EV550998       --> CACCGGTTATTAAGAGAGAGGTTTTTAGGGAATCGACAGAGTTTCTGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538551       --> CACCGGTTATTAAGAGAGAGGTTTTTAAGGAATCGACAGAGTTTCTGAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV550909       --> CACCGGTTATTAAGAGAGAGGTTTTTAGGGAATCGACAGAGTTTCTGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD938974       --> CACCGGTTATTAAGAGAGAGGCTTTTAGGGAATCGACA............  Raphanus sativus var. oleiformis
EW718113       --> CACCGGTTATTAAGAGAGAGGCTTTTAGGGAATCGACAGAGTTTCTAAGC  Raphanus sativus var. oleiformis
EX765524       --> CACCGGTTATTAAGAGAGAGGTTTTTAGGGAATCGACAGAGTTTCTGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)

               599    -    649
UN21720        --> GCGTGTTGCTTGTGTAAGAAGAGACTTCAAGGCAAAGACATATACATGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- GCGTGTTGCTTGTGTAAGAAGAGACTTCAAGGC.................
EV546181       <-- GCGTGTTGCTTGTGTAAGAAGAGACTTCAAGGCAAAGACATATACATGTA
EV542533       <-- GCGTGTTGCTTGTGTAAGAAGAGACTTCAAGGCAAAGACATATACATGTA
EY933987       <-- GCGTGTTGCTTGTGTAAGAAGAGACTTCAAGGCAAAGACATATACATGTA
EX899315       <-- GCGTGTTGCTCGTGTAAGAAGAGACTTCAAGGCAAAGACATATACATGTA
EW721402       <-- GCGTGTTGCTTGTGTAAGAAGAGACTTCAAGGCAAAGACATATACATGTA
FD935206       <-- GCGTGTTGCTTGTGTAAGAAGAGACTTCAAGGCAAAGACATATACATGTA
FD984035       <-- GCGTGTTGCTTGTGTAAGAAGAGACTTCAAGGCAAAGACATATACATGTA
EW720619       <-- GCGCGTTGCTTGTGTAAGAAGAGACTTCAAGGCAAAGACATATACATGTA
EY917454       <-- GCGTGTTGCTTGTGTAAGAAGAGACTTCAAGGCAAAGACATATACATGTA
EW728927       <-- GCGTGTTGCTTGTGTAAGAAGAGACTTCAAGGCAAAGACATATACATGTA
EY935435       <-- GCGTGTTGCTTGTGTAAGAAGAGACTTCAAGGCAAAGACATATACATGTA
EW717399       --> GCGTGTTGCTTGTGTAAGAAGAGACTTCAAGGCAAAGACATATACATGTA
EV550998       --> GCGTGTTGCTTGTGTAAGAAGAGACTTCAAGGCAAAGACATATACATGTA
EV538551       --> GCGTGTTGCTTGTGTAAGAAGAGACTTCAAGGCAAAGACATATACATGTA
EV550909       --> GCGTGTTGCTTGTGTAAGAAGAGACTTCAAGGCAAAGACATATACATGTA
FD938974       --> ..................................................
EW718113       --> GCGTGTTGCTTGTGTAAGAAGAGACTTCAAGGC.................
EX765524       --> GCGTGTTGCTTGTGTAAGAAGAGACTTCAAGGCAAAGACATATACATGTA

               649    -    699
UN21720        --> CAAAGGAGAGATGGGATTCTGCAGTGCAGAGTGCAGATCAGTGCAGATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- ..................................................  Raphanus sativus var. oleiformis
EV546181       <-- CAAAGGAGAGATGGGTTTTTGCAGTGCAGAGTGCAGATCAGTGCAGATAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542533       <-- CAAAGGAGAGATAGGATTTTGCAGTGCAGAGTGCAGATCAGTGCAGATAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY933987       <-- CAAAGGAGAGATGGGATTTTGCAGTGCAGAGTGCAGATCAGTGCAGATAA  Raphanus sativus cv Early Scarlet Globe
EX899315       <-- CAAAGGAGAGATGGGATTCTGCAGTGCAGAGTGCAGATCAGTGCAGATAA  Raphanus sativus cv Early Scarlet Globe
EW721402       <-- CAAAGGAGAGATGGGATTCTGCAGTGCAGAATGCAGATCAGTGCAGATAA  Raphanus sativus var. oleiformis
FD935206       <-- CAAAGGAGAGATGGGATTCTGCAGTGCAGAATGCAGATCAGTGCAGATAA  Raphanus sativus var. oleiformis
FD984035       <-- CAAAGGAGAGATGGGATTCTGCAGTGCAGAGTGCAGATCAGTGCAGATAA  Raphanus raphanistrum subsp. landra
EW720619       <-- CAAAGGAGAGATGGGATTTTGCAGTGCAGAATGCAGATCAGTGCAGATAA  Raphanus sativus var. oleiformis
EY917454       <-- CAAAGGAGAGATGGGATTTTGCAGTGCAGAGCGCAGATCAGTGCAGATAA  Raphanus raphanistrum subsp. landra
EW728927       <-- CAAAGGAGAGATGGGATTCTGCAGTGCAGAGTGCAGATCAGTGCAGATAA  Raphanus sativus cv Early Scarlet Globe
EY935435       <-- CAAAGGAGAGATGGGATTCTGCAGTGCAGAGTGCAGATCAGTGCAGATAA  Raphanus sativus cv Early Scarlet Globe
EW717399       --> CAAAGGAGAGATGGGATTCTGCAGTGCAGAATGCAGATCAGTGCAGATAA  Raphanus sativus var. oleiformis
EV550998       --> CAAAGGAGAGATGGGTTTCTGCAGTGCAGAGTGCAGATCAGTGCAGATAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538551       --> CAAAGGAGAGATAGGATTCTGCAGTGCAGAGTGCAGATCAGTGCAGATAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV550909       --> TAAAGGAGAGATGGGTTTCTGCAGTGCAGAGTGCAGATCAGTGCAGATAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD938974       --> ..................................................  Raphanus sativus var. oleiformis
EW718113       --> ..................................................  Raphanus sativus var. oleiformis
EX765524       --> CAAAGGAGAGATGGGTTTCTGCAGTGCAGAGTGCAGATCAGTGCAGATAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               699    -    749
UN21720        --> TGCAGGACGAACGAAATGAGAAATGTAAATCGCAAATCTCCATAAACGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- ..................................................  Raphanus sativus var. oleiformis
EV546181       <-- TGCAGGACGAACGAAATGAGAAATGTAAATCGCAAGTCTCCAGAAACGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542533       <-- TGCAGGACGAACGAAATGAGAAATGTAAATCGCAAATCTCCATAAACGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY933987       <-- TGCAGGACGAACGAAATGAGAAATGTAAATCGCAAATCTCCATAAACGTC  Raphanus sativus cv Early Scarlet Globe
EX899315       <-- TGCAGGACGAACGAAATGAGAAATGTAAATCGCAAATCTCCATAAACGTC  Raphanus sativus cv Early Scarlet Globe
EW721402       <-- TGCAGGACGAACAAAATGAGAAATGTAAATCGCAAATCTCCATAAACGTC  Raphanus sativus var. oleiformis
FD935206       <-- TGCAGGACGAACAAAATGAGAAATGTAAATCGCAAATCTCCATAAACGTC  Raphanus sativus var. oleiformis
FD984035       <-- TGCAGGACGAACGAAATGAGAAATGTAAATCGCAAATCTCCATAAACGTC  Raphanus raphanistrum subsp. landra
EW720619       <-- TGCAGGACGAACAAAATGAGAAATGTAAATCGCAAATCTCCATAAACGTC  Raphanus sativus var. oleiformis
EY917454       <-- TGCAGGACGAACGAAATGAGAAATGTAAATCGCAAATCTCCATAAACGTC  Raphanus raphanistrum subsp. landra
EW728927       <-- TGCAGGACGAACGAAATGAGAAATGTAAATCGCAAATCTCCATAAACGTC  Raphanus sativus cv Early Scarlet Globe
EY935435       <-- TGCAGGACGAACGAAATGAGAAATGTAAATCGCAAATCTCCATAAACGTG  Raphanus sativus cv Early Scarlet Globe
EW717399       --> TGCAG-ACGAACAAAATGAGAA-TGTAAATCGCAA-TCTCCATAAACGTC  Raphanus sativus var. oleiformis
EV550998       --> TGCACGACGAACGAAATGAGAAATGTAAATCGCAAGTCTCCAGAAACGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538551       --> TGCAGGACGAACGAAATGAGAAATGTAAATCGCAAATCTCCATAAACGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV550909       --> TGCAGGACGAACGAAATGAGAAATGTAAATCGCAAGTCTCCAGAAACGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD938974       --> ..................................................  Raphanus sativus var. oleiformis
EW718113       --> ..................................................  Raphanus sativus var. oleiformis
EX765524       --> TGCAGGACGAACGAAATGA-AAATGTAAATCGCAAGTCTCCAGAAACGTC  Raphanus raphanistrum subsp. raphanistrum (NY)

               749    -    799
UN21720        --> GACATTTCAAGCTCTCCTTGTGCCGGCGAGCAGAGTAACTCCGCC-GGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- ..................................................
EV546181       <-- GACATTTCAAGCTCTCCTTGTGCCGGCGAGCAGAGTAACTCCGCC-GGGA
EV542533       <-- GACATTTCAAGCTCTCCTTGTGCCGGCGAGCAGAGTAACTCCGCC-GGGA
EY933987       <-- GACATTTCAAGCTCTCCTTGTGCCGGCGAGCAGAGTAACTCCGCC-GGGA
EX899315       <-- GACATTTCAAGCTCTCCTTGTGCCGGCGAGCAGAGTAACTCCGCG-GGGA
EW721402       <-- GACATTTCAAGCTCTCCTTGTGCCGGCGAGCAGAGTAACTCCGCC-GGGA
FD935206       <-- GACATTTCAAGCTCTCCTTGTGCCGGCGAGCAGAGTAACTCCGCC-GGGA
FD984035       <-- GACATTTCAAGCTCTCCTTGTGCCGGCGAGCAGAGTAACTCCGCC-GGGA
EW720619       <-- GACATTTCAAGCTCTCCTTGTGCCGGCGAGCAGAGTAACTCCGCC-GGGA
EY917454       <-- GACATTTCAAGCTCTCCTTGTGCCGGCGAGCAGAGTAACTCCGCC-GGGA
EW728927       <-- GACATTTCAAGCTCTCCTTGTGCCGGCGAGCAGAGTAACTCCGCG-GGGA
EY935435       <-- GACATTTCAAGCTCTCCTTGTGCCGGCGAGCAGAGTAACTCCGCC-GGGA
EW717399       --> GACATTTCA-GCTCTC..................................
EV550998       --> GACATTTCAAGCTCTCCTTGTGCCGGCGAGCAGAGTAACTCCGCCCGGGA
EV538551       --> GACATTTCAAGCTCTCCTTGTGCCGGCGAGCAGAGTAACTCCG.......
EV550909       --> GACATTTCAAGCTCTCCTTGTGCCGGCGAGCAGAGTAACTCCGCC-GGGA
FD938974       --> ..................................................
EW718113       --> ..................................................
EX765524       --> GACATTTCAAGCTCTCCTTGTGCCGGCGAGCAGAGTAACTCCGCC-GGGA

               799    -    849
UN21720        --> TATTCATATTTTAGGATGAGCAAAATCGTTCAAAGAGAAGTACATTAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- ..................................................
EV546181       <-- TATTCATATTT-AGGATGAGCAAAATCGTTGAGAGAGAAGTACATTAACA
EV542533       <-- TATTCATATTTTAGGATGAGCAAAATCGTTCGAAGAGAAGTACATTGACA
EY933987       <-- TATTCATATTTTAGGATGAGCAAAATCGTTCAAAGAGAAGTACATTAACA
EX899315       <-- TATTCATATTTTAGGATGAGCAAAATCGTTCAAAGAGAAGTACATTAACA
EW721402       <-- TATTCATATTTTAGGATGAGCAAAATCGTTCAAAGAGAAGTACATTAACA
FD935206       <-- TATTCATATTTTAGGATGAGCAAAATCGTTCAAAGAGAAGTACATTAACA
FD984035       <-- TATTCATATTTTAGGATGAGCAAAATCGTTCAAAGAGAAGTACATTAACA
EW720619       <-- TATTCATATTTTAGGATGAGCAAAATCGTTCAAAGAGAAGTACATTAACA
EY917454       <-- TATTCATATTTTAGGATGAGCAAAATCGTTCAAAGAGAAGTACATTAACA
EW728927       <-- TATTCATATTTTAGGATGAGCAAAATCGTTCAAAGAGAAGTACATTAACA
EY935435       <-- TATTCATATTTTAGGATGAGCAAAATCGTTCAAAGAGAAGTACATTAACA
EW717399       --> ..................................................
EV550998       --> TATTCATAT.........................................
EV538551       --> ..................................................
EV550909       --> TATTCATATTTTAG-ATGAGCAAAATCGTTGAGAGAGAAGTACATTAACA
FD938974       --> ..................................................
EW718113       --> ..................................................
EX765524       --> TATTCATATTTTAGGATGAGCAAAATCGTTGAGAGAGAAGTACATTAACA

               849    -    899
UN21720        --> TAAAAAAA--GTCGTCATTATTCAATAGTACCTTCAAAATTTTAATAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- ..................................................  Raphanus sativus var. oleiformis
EV546181       <-- TAAAAAAAAAGTGGTCATTATTCAATAGCACCTTCAAAATTTTAATAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542533       <-- TAAAAAAA--GTCGTCATTATTCAATAGTACCTTCAAAGTTTTAATAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY933987       <-- TAAAAAAA--GTCGTCTTTATTCAATAGTACCTTCAAATTTTTAATAAGA  Raphanus sativus cv Early Scarlet Globe
EX899315       <-- TAAAAAAA--GTCGTCATTATTCAATAGTACCTTCAAAATTTTAATAAGA  Raphanus sativus cv Early Scarlet Globe
EW721402       <-- TAAAAAAA-AGTCGTCATTATTCAATAGTACCTTCAAAATTTTAATAAGA  Raphanus sativus var. oleiformis
FD935206       <-- TAAAAAAA-AGTCGTCATTATTCAATAGTACCTTCAAAATTTTAATAAGA  Raphanus sativus var. oleiformis
FD984035       <-- TAAAAAAA--GTCGTCATTATTCAATAGTACCTTCAAATTTTTAATAAGA  Raphanus raphanistrum subsp. landra
EW720619       <-- TAAAAAAA-AGTCGTCATTATTCAATAGTACCTTCAAAATTTTAATAAGA  Raphanus sativus var. oleiformis
EY917454       <-- TAAAAAAA--GTCGTCATTATTCAATAGTACCTTCAAATTTTTAATAAGA  Raphanus raphanistrum subsp. landra
EW728927       <-- TAAAAAAA--GTCGTCATTATTCAATAGTACCTTCAAAATTTTAATAATA  Raphanus sativus cv Early Scarlet Globe
EY935435       <-- TAAAAAAA--GTCGTCTTTATTCAATAGTACCTTCAAATTTTTAATAAGA  Raphanus sativus cv Early Scarlet Globe
EW717399       --> ..................................................  Raphanus sativus var. oleiformis
EV550998       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538551       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV550909       --> T.................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD938974       --> ..................................................  Raphanus sativus var. oleiformis
EW718113       --> ..................................................  Raphanus sativus var. oleiformis
EX765524       --> TAAAAAAAAAGTGGTCATTATTCAATAGCACCTTCAAAATTTTAATAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)

               899    -    949
UN21720        --> AAA-GAAAAAAA--GATTGAAAATTTTGGTTAGGTTGTAAGCAACTTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- ..................................................  Raphanus sativus var. oleiformis
EV546181       <-- AAA-GAAAAAAA-AGATTGAAAATTTTGGTTAGGTTGTAAGCAACTTGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542533       <-- AAA-GAAAAAAA--GATTGAAAATTTTGGTTAGGTTGTAAGCAACTTGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY933987       <-- AAA-GAAAAAAA--GATTGAAAATTTTGGTTAGGTTGTAAGCAACTTGTA  Raphanus sativus cv Early Scarlet Globe
EX899315       <-- AAA-GAAAAAAA--GATTGAAAATTTTGGTTAGTTTGTAAGCAACTTGTA  Raphanus sativus cv Early Scarlet Globe
EW721402       <-- AAA-GAAAAAAA--GATTGAAAATTTTGGTTAGGTTGCAAGCAACTTGTA  Raphanus sativus var. oleiformis
FD935206       <-- AAA-GAAAAAAA--GATTGAAAATTTTGGTTAGGTTGCAAGCAACTTGTA  Raphanus sativus var. oleiformis
FD984035       <-- AAA-GAAAAAAA--GATTGAAAATTTTGGTTAGGTTGTAAGCAACTTGTA  Raphanus raphanistrum subsp. landra
EW720619       <-- AAA-GAAAAAAA--GATTGAAAATTTTGGTTAGGTTGCAAGCAACTTGTA  Raphanus sativus var. oleiformis
EY917454       <-- AAA-GAAAAAAA--GATTGAAAATTTTGGTTAGGTTGTAAGCAACTTGTA  Raphanus raphanistrum subsp. landra
EW728927       <-- AAAAGAAAAAAA--GATTGAAAATTTTGGTTAGTTTGTAAGCAACTTGTA  Raphanus sativus cv Early Scarlet Globe
EY935435       <-- AAA-GAAAAAAA--GATTGAAAATTTTGGTTAGGTTGTAAGCAACTTGTA  Raphanus sativus cv Early Scarlet Globe
EW717399       --> ..................................................  Raphanus sativus var. oleiformis
EV550998       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538551       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV550909       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD938974       --> ..................................................  Raphanus sativus var. oleiformis
EW718113       --> ..................................................  Raphanus sativus var. oleiformis
EX765524       --> AAA-GAAAAAAAAGGATTGAAAATTTTGGTTAGGTTGTAAGCAACTTGTA  Raphanus raphanistrum subsp. raphanistrum (NY)

               949    -    999
UN21720        --> CAGAAGCTTTGCTTTTGGTTTTGATTAAGGTTTATATGTATTAAAATAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- ..................................................  Raphanus sativus var. oleiformis
EV546181       <-- CAGAAGCTTTGCTTTTGGTTTTGATTAAGGTTTATATGTATTAAAATAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542533       <-- TAGAAGCTTTGCTTTTGGTTTTGATTAAGGTTTATATGTATTAAAATAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY933987       <-- CAGAAGCTTTGCTTTTGGTTTTGATTAAGGTTTATATGTATTAAAATAAA  Raphanus sativus cv Early Scarlet Globe
EX899315       <-- CAGAAGCTTTGCTTTTGGTTTTGATTAAGGTTTATATGTATTAAAATAAA  Raphanus sativus cv Early Scarlet Globe
EW721402       <-- TAGAAGCTTTGCTTTTGGTTTTGATTAAGGTTTATATGTATTAAAATAAA  Raphanus sativus var. oleiformis
FD935206       <-- TAGAAGCTTTGCTTTTGGTTTTGATTAAGGTTTATATGTATTAAAATAAA  Raphanus sativus var. oleiformis
FD984035       <-- CAGAAGCTTTGCTTTTGGTTTTGATTAAGGTTTATATGTATTAAAATAAA  Raphanus raphanistrum subsp. landra
EW720619       <-- TAGAAGCTTTGCTTTTGGTTTTGATTAAGGTTTATATGTATTAAAATAAA  Raphanus sativus var. oleiformis
EY917454       <-- CAGAAGCTTTGCTTTTGGTTTTGATTAAGGTTTATATGTATTAAAATAAA  Raphanus raphanistrum subsp. landra
EW728927       <-- CAGAAGCTTTGCTTTTGGTTTTGATTAAGGTTTATATGTATTAAAATAAA  Raphanus sativus cv Early Scarlet Globe
EY935435       <-- CAGAAGCTTTGCTTTTGGTTTTGATTAAGGTTTATATGTATTAAAATAAA  Raphanus sativus cv Early Scarlet Globe
EW717399       --> ..................................................  Raphanus sativus var. oleiformis
EV550998       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538551       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV550909       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD938974       --> ..................................................  Raphanus sativus var. oleiformis
EW718113       --> ..................................................  Raphanus sativus var. oleiformis
EX765524       --> CAGAAGCTTTGCTTTTGGTTTTGATTAAGGTTTATATGTATTAAAATAAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               999    -   1049
UN21720        --> TCAATAGAAGTGTTTGTTGGTTCTTTGATTAAGTATATGTATAGATTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- ..................................................  Raphanus sativus var. oleiformis
EV546181       <-- TCAATAGAAGTGTTTGTTGGTTCTTgg.......................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542533       <-- TCAATAGAAGTGTTTGTTGGTTCTTgg.......................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY933987       <-- TCAATAGAAGTGTTTGTTGGTTtttag.......................  Raphanus sativus cv Early Scarlet Globe
EX899315       <-- TCAAT-GAAGTGTTTGTTGGTTCTTgg.......................  Raphanus sativus cv Early Scarlet Globe
EW721402       <-- TCAAT-GAAGTGTTTGTTGGTTCTTTGATTAAGTATATGTATAGATTACC  Raphanus sativus var. oleiformis
FD935206       <-- TCAAT-GAAGTGTTTGTTGGTTCTc.........................  Raphanus sativus var. oleiformis
FD984035       <-- TCAATAGAAGTGTTTGTTGGTTTTTGGATc....................  Raphanus raphanistrum subsp. landra
EW720619       <-- TCAAT-GAAGTGTTTGTTGGTT............................  Raphanus sativus var. oleiformis
EY917454       <-- TCAATAGAAGTGTTTGTTGGTTTTTGGATT....................  Raphanus raphanistrum subsp. landra
EW728927       <-- TCAAT-GAAGTGTTTGTTGGTTCTTGGATTAAGTATATGTATAGATTACC  Raphanus sativus cv Early Scarlet Globe
EY935435       <-- TCAATAGAATTGTTTGTTGGTTtttggac.....................  Raphanus sativus cv Early Scarlet Globe
EW717399       --> ..................................................  Raphanus sativus var. oleiformis
EV550998       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538551       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV550909       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD938974       --> ..................................................  Raphanus sativus var. oleiformis
EW718113       --> ..................................................  Raphanus sativus var. oleiformis
EX765524       --> TCAATAGAAGTGTTTGTTGGTTCTTGGATc....................  Raphanus raphanistrum subsp. raphanistrum (NY)

               1049   -   1099
UN21720        --> GAATCTTCACAAATTACTTGTATGCAAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW721739       <-- ..............................
EV546181       <-- ..............................
EV542533       <-- ..............................
EY933987       <-- ..............................
EX899315       <-- ..............................
EW721402       <-- GAATCTTCACAAATTACTTGTATGCAAAAC
FD935206       <-- ..............................
FD984035       <-- ..............................
EW720619       <-- ..............................
EY917454       <-- ..............................
EW728927       <-- caaa..........................
EY935435       <-- ..............................
EW717399       --> ..............................
EV550998       --> ..............................
EV538551       --> ..............................
EV550909       --> ..............................
FD938974       --> ..............................
EW718113       --> ..............................
EX765524       --> ..............................