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Alignment for radish unigene UN21724

               1      -     51
UN21724        --> GGATCGAATCTTACATGCACTTCAGAGAAGACTTAAAAATCTAATTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- ..................................................
EY902999       <-- ..................................................
EV542665       <-- ..................................................
FD567368       <-- ..................................................
FD966982       <-- ..................................................
EY896177       <-- ..................................................
FD944129       <-- ..................................................
FD936887       <-- ..................................................
EY906947       --> GGATCGAATCTTACATGCACTTCAGAGAAGACTTAAAAATCTAATTCCTC
EX754398       --> .....................ggAGAGAAGACTTAAAAATCTAATTCCTC
EV538719       --> .........................................TAATTCCTC
EX761918       --> ..................................................

               51     -    101
UN21724        --> AAGAAGACAACGAACATGGCGAAAAACGGTGTAGATATGGAAGACATTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- ..................................................
EY902999       <-- ..................................................
EV542665       <-- ..................................................
FD567368       <-- ..................................................
FD966982       <-- ..................................................
EY896177       <-- ..................................................
FD944129       <-- ..................................................
FD936887       <-- ..................................................
EY906947       --> AAGAAGACAACGAACATGGCGAAAAACGGTGTAGATATGGAAGACATTCA
EX754398       --> AAGAAGACAACGAACATGGCGAAAAACGGTGTAGATATGGAAGACATTCA
EV538719       --> AAGAAGACAACGAACATGGCGAAAAACGGTGTAGATATGGAAGACATTCA
EX761918       --> ..................................................

               101    -    151
UN21724        --> GACAGTCGATCTCATGTCTGAACTCCTCCGTCGCATGAAGTGTGCCTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- ...................ctgagctctCGTCGCATGAAGTGTGCCTCTA
EY902999       <-- ..................................................
EV542665       <-- ..................................................
FD567368       <-- ..................................................
FD966982       <-- ..................................................
EY896177       <-- ..................................................
FD944129       <-- ..................................................
FD936887       <-- ..................................................
EY906947       --> GACAGTCGATCTCATGTCTGAACTCCTCCGTCGCATGAAGTGTGCCTCTA
EX754398       --> GACAGTCGATCTCATGTCTGAACTCCTCCGTCGCATGAAGTGTGCCTCTA
EV538719       --> GACAGTCGATCTCACGTCTGAACTCCTCCGTCGCATGAAGCGTGCCTCTA
EX761918       --> .....................gCTCCTCCGTCGCATGAAGTGTGCCTCTA

               151    -    201
UN21724        --> AACCTGACAAACGTCTCGTTTTCATCGGTCCACCTGGCTCAGGAAAAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- --ACTGACAAACGTCTCGTTTTCATCGGTCCAC-TGGCTCAG-AAAAGGT
EY902999       <-- ........AAACGTCTCGTTTTCATCGGTCCAC-TGGCTCAGGAAAAGGT
EV542665       <-- .....................................CTCAGGAAAAGGT
FD567368       <-- ..................................................
FD966982       <-- ..................................................
EY896177       <-- ..................................................
FD944129       <-- ..................................................
FD936887       <-- ..................................................
EY906947       --> AACCTGACAAACGTCTCGTTTTCATCGGTCCACCTGGCTCAGGAAAAGGT
EX754398       --> AACCTGACAAACGTCTCGTTTTCATCGGTCCACCTGGCTCAGGAAAAGGT
EV538719       --> AACCTGACAAACGTCTCGTTTTCATCGGTCCACCTGGCTCAGGAAAAGGT
EX761918       --> AACCTGACAAACGTCTCGTTTTCATCGGTCCACCTGGCTCAGGAAAAGGT

               201    -    251
UN21724        --> ACGCAGTCTCCGGTCATAAAGGATGAGTTCTGCTTGTGTCATTTGTCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- ACGCAGTCTCCGGTCATAAAGGATGAGTTCTGCTTGTGTCATTTGTCCAC
EY902999       <-- ACTCAGTCTCCGGTCATAAAGGATGAGTTCTGCTTGTGTCATTTGTCCAC
EV542665       <-- ACGCAGTCTCCGGTCATAAAGGATGAGTTCTGCTTGTGTCATTTGTCCAC
FD567368       <-- ..............................TGCTTGTGTCATTTGTCCAC
FD966982       <-- ...............................................CAC
EY896177       <-- ..................................................
FD944129       <-- ..................................................
FD936887       <-- ..................................................
EY906947       --> ACTCAGTCTCCGGTCATAAAGGATGAGTTCTGCTTGTGTCATTTGTCCAC
EX754398       --> ACGCAGTCTCCGGTCATAAAGGATGAGTTCTGCTTGTGTCATTTGTCCAC
EV538719       --> ACGCAGTCTCCGGTCATAAAGGATGAGTTCTGCTTGTGTCATTTGTCCAC
EX761918       --> ACGCAGTCTCCGGTCATAAAGGATGAGTTCTGCTTGTGTCATTTGTCCAC

               251    -    301
UN21724        --> TGGAGACATGCTTAGAGCTGCTGTTGCTGCTAAGTCCCCTCTTGGTGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- TGGTGACATGCTTAGAGCTGCTGTTGCTGCTAAGTCCCCTCTTGGTGTCA
EY902999       <-- TGGAGACATGCTTAGAGCTGCTGTTGCTGCTAAGTCCCCTCTTGGTGTCA
EV542665       <-- TGGAGACATGCTTAGAGCTGCTGTTGCTGCTAAGTCCCCTCTTGGTGTCA
FD567368       <-- TGGTGACATGCTTAGAGCTGCTGTTGCTGCTAAGTCCCCTCTTGGTGTCA
FD966982       <-- TGGAGACATGCTTAGAGCTGCTGTTGCTGCTAAGTCCCCTCTTGGTGTCA
EY896177       <-- ..............................TAAGTCCCCTCTTGGTGTCA
FD944129       <-- ..................................................
FD936887       <-- ..................................................
EY906947       --> TGGAGACATGCTTAGAGCTGCTGTTGCTGCTAAGTCCCCTCTTGGTGTCA
EX754398       --> TGGAGACATGCTTAGAGCTGCTGTTGCTGCTAAGTCCCCTCTTGGTGTCA
EV538719       --> TGGAGACATGCTTAGAGCTGCTGTTGCTGCTAAGTCCCCTCTTGGTGTCA
EX761918       --> TGGAGACATGCTTAGAGCTGCTGTTGCTGCTAAGTCCCCTCTTGGTGTCA

               301    -    351
UN21724        --> AGGCAAAGGAAGCTATGGACAAGGGAGAGCTTGTTTCTGATGACTT-GGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- AGGCAAAGGAAGCTATGGACAAGGGAGAGCTTGTTTCTGATGACTT-GGT
EY902999       <-- AGGCAAAGGAAGCTATGGACAAGGGAGAGCTTGTTTCTGATGACTT-GGT
EV542665       <-- AGGCAAGGGAAGCTATGGACAAGGGAGAGCTTGTTTCTGATGACTT-GGT
FD567368       <-- AGGCAAAGGAAGCTATGGACAAGGGAGAGCTTGTTTCTGATGACTT-GGT
FD966982       <-- AGGCAAAGGAAGCTATGGACAAGGGAGAGCTTGTTTCTGATGACTT-GGT
EY896177       <-- AGGCAAAGGAAGCTATGGACAAGGGAGAGCTTGGTTCTGATGACTT-GGT
FD944129       <-- ....AAAGGAAGCTATGGACAAGGGAGAGCTTGTTTCTGATGACTT-GGT
FD936887       <-- ..................................................
EY906947       --> AGGCAAAGGAAGCTATGGACAAGGGAGAGCTTGTTTCTGATGACTT-GGT
EX754398       --> AGGCAAAGGAAGCTATGGACAAGGGAGAGCTTGTTTCTGATGACTT-GGT
EV538719       --> AGGCAAGGGAAGCTATGGACAAGGGAGAGCTTGTTTCTGATGACTT-GGT
EX761918       --> AGGCAAAGGAAGCTATGGACAAGGGAGAGCTTGTCTCTGATGACTTTGGT

               351    -    401
UN21724        --> T-GTT-GGTATCATGGATGAAGCAATGAACAGACCCAAATGTCAGAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- T-GTT-GGTATCATGGATGAAGCAATGAACAGACCCAAATGTCAGGAAGG
EY902999       <-- T-GTT-GGTATCATGGATGAAGCAATGAACAGACCCAAATGTCAGAAAGG
EV542665       <-- T-GTT-GGTATCATGGATGAAGCAATGAACAGACCCAAATGTCAGAAAGG
FD567368       <-- T-GTT-GGTATCATGGATGAAGCAATGAACAGACCCAAATGTCAGAAAGG
FD966982       <-- T-GTT-GGTATCATGGATGAAGCAATGAACAGACCCAAATGTCAGAAAGG
EY896177       <-- T-GTT-GGTATCATGGATGAAGCAATGAACAGACCCAAATGTCAGAAAGG
FD944129       <-- T-GTT-GGTATCATGGATGAAGCAATGAACAGACCCAAATGTCAGAAAGG
FD936887       <-- ..................................................
EY906947       --> T-GTT-GGTATCATGGATGAAGCAATGAACAGACCCAAATGTCAGAAAGG
EX754398       --> T-GTT-GGTATCATGGATGAAGCAATGAACAGACCCAAATGTCAGAAAGG
EV538719       --> T-GTT-GGTATCATGGATGAAGCAATGAACAGACCCAAATGTCAGAAAGG
EX761918       --> TTGTTTGGTATCATGGATGAAGCAATGAACAGACCCAAATGTCAGAAAGG

               401    -    451
UN21724        --> TTTCATTC--TTGATGGCTT-CCCTAGGACCGTCACACAAGCTGAGAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- TTTCATTC--TTGATGGCTT-CCCTAGGACCGTAACACAAGCTGAGAAGC  Raphanus sativus cv Early Scarlet Globe
EY902999       <-- TTTCATTC--TTGATGGCTT-CCCTAGGACCGTCACACAAGCTGAGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542665       <-- TTTCATTC--TTGATGGCTT-CCCTAGGACCGTCACACAAGCTGAGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD567368       <-- TTTCATTC--TTGATGGCTT-CCCTAGGACCGTAACACAAGCTGAGAATC  Raphanus sativus var. oleiformis
FD966982       <-- TTTCATTC--TTGATGGCTT-CCCTAGGACCGTCACACAAGCTGAGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY896177       <-- TTTCATTC--TTGATGGCTT-CCCTAGGACCGTAGCACAAGCTGAGAAGC  Raphanus raphanistrum subsp. maritimus
FD944129       <-- TTTCATTC--TTGATGGCTT-CCCTAGGACCGTAACACAAGCTGAGAAGC  Raphanus sativus cv Early Scarlet Globe
FD936887       <-- ..................................................  Raphanus sativus var. oleiformis
EY906947       --> TTTCATTC--TTGATGGCTT-CCCTAGGACCGTCACACAAGCTGAGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754398       --> TTTCATTC--TTGATGGCTT-CCCTAGGACCGTCACACAAGCTGAGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538719       --> TTTCATTC--TTGATGGCTT-CCCTAGGACCGTCACACAAGCTGAGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761918       --> TTTCATCCCTTTGATGGTTTTCCCTAGGACCGTCACACAAGCTGAGAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN21724        --> TTGATGAGATGCTTAATAGAAGAGGAGCTCAGATTGACAAAGTGCTTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- TTGATGAGATGCTTAATAGAAGAGGAGCTCAGATTGACAAAGTGCTTAAT
EY902999       <-- TTGATGAGATGCTTAATAGAAGAGGAGCTCAGATTGACAAAGTGTTTAAT
EV542665       <-- TTGATGAGATGCTTAATAGAAGAGGAGCTCAGATTGACAAAGTGCTTAAT
FD567368       <-- TTGATGAGATGCTTAATAGAAGAGGAGCTCAGATTGACAAAGTGCTTAAT
FD966982       <-- TTGATGAGATGCTTAATAGAAGAGGAGCTCAGATTGACAAAGTTCTTAAT
EY896177       <-- TTGATGAGATGCTTAATAGAAGAGGAGCTCAGATTGACAAAGTGCTTAAT
FD944129       <-- TTGATGAGATGCTTAATAGAAGAGGAGCTCAGATTGACAAAGTGCTTAAT
FD936887       <-- ................................ATTGACAAAGTGCTTAAT
EY906947       --> TTGATGAGATGCTTAATAGAAGAGGAGCTCAGATTGACAAAGTGTTTAAT
EX754398       --> TTGATGAGATGCTTAATAGAAGAGGAGCTCAGATTGACAAAGTGCTTAAT
EV538719       --> TTGATGAGATGCTTAATAGAAGAGGAGCTCAGATTGACAAAGTGCTTAAT
EX761918       --> TTGATGAGATGCTTAATAGA..............................

               501    -    551
UN21724        --> TTTGCAATCGATGATTCGGTTCTTGAAGAAAGAATTACTGGAAGGTGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- TTTGCAATCGATGATTCGGTTCTTGAAGAAAGAATTACTGGAAGGTGGAT
EY902999       <-- TTTGCAATCGATGATTCGGTTCTTGAAGAAAGAATTACTGGAAGGTGGAT
EV542665       <-- TTTTCAATCGATGATTCGGTTCTTGAAGAAAGAATTACTGGAAGGTGGAT
FD567368       <-- TTTGCAATCGATGATTCGGTTCTTGAAGAAAGAATTACTGGAAGGTGGAT
FD966982       <-- TTTGCAATCGATGATCCGGTTCTTGAAGAAAGAATTACTGGAAGGTGGAT
EY896177       <-- TTTGCAATCGATGATTCGGTTCTTGAAGAAAGAATTACTGGAAGGTGGAT
FD944129       <-- TTTGCAATCGATGATTCGGTTCTTGAAGAAAGAATTACTGGAAGGTGGAT
FD936887       <-- TTTGCAATCGATGATTCGGTTCTTGAAGAAAGAATTACTGGAAGGTGGAT
EY906947       --> TTTGCAATCGATGATTCGGTTCTTGAAGAAAGAATTACTGGAAGGTGGAT
EX754398       --> TTTGCAATCGATGATTCGGTTCTTGAAGAAAGAATTACTGGAAGGTGGAT
EV538719       --> TTTTCAATCGATGATTCGGTTCTTGAAGAAAGAATTACTGGAAGGTGGAT
EX761918       --> ..................................................

               551    -    601
UN21724        --> TCACCCTTCAAGTGGAAGGAGCTATCATACCAAATTCGCACCTCCTAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- TCACCCTTCAAGTGGAAGGAGCTATCATACCAAATTCGCACCTCCTAAAG
EY902999       <-- TCACCCTTCAAGTGGAAGGAGCTATCATACCAAATTCGCACCTCCTAAAG
EV542665       <-- TCACCCTTCAAGTGGAAGGAGCTATCATACCAAATTCGCACCTCCTAAAG
FD567368       <-- TCACCCTTCAAGTGGAAGGAGCTATCATACCAAATTCGCACCTCCTAAAG
FD966982       <-- TCACCCTTCAAGTGGAAGGAGCTATCATACCAAATTCGCACCTCCTAAAG
EY896177       <-- TCACCCTTCAAGTGGAAGGAGCTATCATACCAAATTCGCACCTCCTAAAG
FD944129       <-- TCACCCTTCAAGTGGAAGGAGCTATCATACCAAATTCGCACCTCCTAAAG
FD936887       <-- TCACCCTTCAAGTGGAAGGAGCTATCATACCAAATTCGCACCTCCTAAAG
EY906947       --> TCACCCTTCAAGTGGAAAGAGCTATCATACCAAATTCGCACCTCCTAAAG
EX754398       --> TCACCCTTCAAGTGGAAGGAGCTATCATACCAAATTCGCACCTCCTAAAG
EV538719       --> TCACCCTTCAAGTGGAAGGAGCTATCATACCAAATTCGCACCTCCTAAAG
EX761918       --> ..................................................

               601    -    651
UN21724        --> TTCCTGGAGTCGATGATGTGACTGGAGAGCCATTGATTCAACGTAAAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- TTCCTGGAGTCGATGATGTGACTGGAGAGCCATTGATTCAACGTAAAGAT
EY902999       <-- TTCCTGGAGTCGATGATGTGACTGGAGAGCCATTGATTCAACGTAAAGAT
EV542665       <-- TTCCTGGAGTCGATGATGTGACTGGAGAGCCATTGATTCAACGTAAAGAT
FD567368       <-- TTCCTGGAGTCGATGATGTGACTGGAGAGCCATTGATTCAACGTAAAGAT
FD966982       <-- TTCCTGGAGTCGATGATGTGACTGGAGAGCCATTGATTCAACGTAAAGAT
EY896177       <-- TTCCTTGAGTCGATGATGTGACTGGAGAGCCATTGATTCAACGTAAAGAT
FD944129       <-- TTCCTGGAGTCGATGATGTGACTGGAGAGCCATTGATTCAACGTAAAGAT
FD936887       <-- TTCCTGGAGTCGATGATGTGACTGGAGAGCCATTGATTCAACGTAAAGAT
EY906947       --> TTCCTGGAGTCGATGATGTGACTGGAGAGCCATTGATTCAACGTAAAGAT
EX754398       --> TTCCTGGAGTCGATGATGTGACTGGAGAGCCATTGATTCAACGTAAAGAT
EV538719       --> TTCCTGGAGTCGATGATGTGACTGGAGAGCCATTGATTCAACGTAAAGAT
EX761918       --> ..................................................

               651    -    701
UN21724        --> GACAATGCGGATGTTCTTAGGTCAAGGCTGG-ATGCATTCCACAAGCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- GACAATGCGGATGTTCTTAGGTCAAGGCTGG-ATGCATTCCACAAGCAGA
EY902999       <-- GACAATGCGGATGTTCTTAGGTCAAGGCTGG-ATGCATTCCACAAGCAGA
EV542665       <-- GACAATGCGGATGTTCTTAGGTCAAGGCTGG-ATGCATTCCACAAGCAGA
FD567368       <-- GACAATGCGGATGTTTTTAGGTCAAGGCTGG-ATGCATTCCACAAGCAGA
FD966982       <-- GACAATGCGGATGTTCTTAGGTCAAGGCTGG-ATGCATTCCACAAGCAGA
EY896177       <-- GACAATGCGGATGTTCTTAGGTCAAGGCTGG-ATGCATTCCACAAGCAGA
FD944129       <-- GACAATGCGGATGTTCTTAGGTCAAGGCTGG-ATGCATTCCACAAGCAGA
FD936887       <-- GACAATGCGGATGTTCTTAGGTCAAGGCTGG-ATGCATTCCACAAGCAGA
EY906947       --> GACAATGCGGATGTTC..................................
EX754398       --> GACAATGCGGATGTTCTTAtgt............................
EV538719       --> GACAATGCGGATGTTCTTAGGTCAAGGCTGGGATGCATTCCACAAGCAGA
EX761918       --> ..................................................

               701    -    751
UN21724        --> CGCAACCGGTAATTGACTACTACGCGAAGAA-GGGGAATCTGGTGAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- CGCAACCGGTAATTGACTACTACGCGAAGAA-GGGGAATCTGGTGAACAT  Raphanus sativus cv Early Scarlet Globe
EY902999       <-- CGCAACCGGTCATTGACTACTACGCGAAGAA-GGGGAATCTGGTGAACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542665       <-- CGCAACCGGTCATTGACTACTACGCGAAGAA-GGGGAATCTGGTGAACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD567368       <-- CGCAACCGGTAATTGACTACTACGCGAAGAA-GGGGAATTTGGTGAACAT  Raphanus sativus var. oleiformis
FD966982       <-- CGCAACCGGTCATTGACTACTACGCGAAGAA-GGGGAATCTGGTGAACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY896177       <-- CGCAACCGGTAATTGACTACTACGCGAAGAA-GGGGAATCTGGTGAACAT  Raphanus raphanistrum subsp. maritimus
FD944129       <-- CGCAACCGGTAATTGACTACTACGCGAAGAA-GGGGAATCTGGTGAACAT  Raphanus sativus cv Early Scarlet Globe
FD936887       <-- CGCAACCGGTAATTGACTACTACGCGAAGAA-GGGGAATCTGGTGAACAT  Raphanus sativus var. oleiformis
EY906947       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754398       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538719       --> CGCAACCGGTCATTGACTACTACGCGAAGAAAGGGGAATCTGGTGAACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761918       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN21724        --> ACCAGCAGAGAAGGCTCCTGAAGAGGTTACCAAAGTGGTGAAGAAGGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- ACCAGCAGAGAAGGCTCCTGAAGAGGTTACCAAAGTGGTGAAGAAGGTTG
EY902999       <-- ACCAGCAGAGAAGGCTCCTGAAGAGGTTACCAAAGTGGTGAAGAAGGTTG
EV542665       <-- ACCAGCAGAGAAGGCTCCTGAATAGGTTACCAAAGTGGTGAAGAAGGTTG
FD567368       <-- ACCAGCAGAGAAGGCTCCTGAAGAGGTTACCAAAGTGGTGAAGAAGGTTG
FD966982       <-- ACCAGCAGAGAAGGCTCCTGAAGAGGTTACCAAAGTGGTGAAGAAGGTTG
EY896177       <-- ACCAGCAGAGAAGGCTCCTTAAGAGGTTACCAAAGTGGTGAAGAAGGTTG
FD944129       <-- ACCAGCAGAGAAGGCTCCTGAAGAGGTTACCAAAGTGGTGAAGAAGGTTG
FD936887       <-- ACCAGCAGAGAAGGCTCCTGAAGAGGTTACCAAAGTGGTGAAGAAGGTTG
EY906947       --> ..................................................
EX754398       --> ..................................................
EV538719       --> ACCAGCAGAGAAAGCTCCTGAAt...........................
EX761918       --> ..................................................

               801    -    851
UN21724        --> TGTCTACATGAAAACTGTAATAAATTTGGCATGAAAATTGAGTTCTAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- TGTCTACATGAAAACTGTAATAAATTTGGCATGAAAATTGAGTTCTAAAA  Raphanus sativus cv Early Scarlet Globe
EY902999       <-- TGTCTACATGAGAACTGTAATAAATTTGGCATGAGAATTGAGTTCTAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542665       <-- TGTCTACATGAGAACTGTAATAAATTTGGCATGAGAATTGAGTTCTAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD567368       <-- TGTTTACATGAAAACTGTAATAAATTTGGCATGAAAATTGAGTTTTAAAA  Raphanus sativus var. oleiformis
FD966982       <-- TGTCTACATGAGAACTGTAATAAATTTGGCATGAGAATTGAGTTCTAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY896177       <-- TGTCTACATGAAAACTGTAATAAATTTGGCATGAAAATTGAGTTCTAAAA  Raphanus raphanistrum subsp. maritimus
FD944129       <-- TGTCTACATGAAAACTGTAATAAATTTGGCATGAAAATTGAGTTCTAAAA  Raphanus sativus cv Early Scarlet Globe
FD936887       <-- TGTTTACATGAAAACTGTAATAAATTTGGCATGAAAATTGAGTTCTAAAA  Raphanus sativus var. oleiformis
EY906947       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754398       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538719       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761918       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               851    -    901
UN21724        --> TCTCTCTTTATACCTTCTTTTGTTTTCTTTTTGAATAAATCTCCTGAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- TCTCTCTTTATACCTTCTTTTGTTTTCTTTTTGAATAAATCTCCTGAGGC  Raphanus sativus cv Early Scarlet Globe
EY902999       <-- TCTCTCTTTATACCTTCTTTTGTTTTCTTTTTGAATAAATCTCCTGAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542665       <-- TCTCTCTTTATACCTTCTTTTGTTTTCTTTTTGAATAAATCTCCTGAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD567368       <-- TCTCTCTTTATACCTTCTTTTGTTTTCTTTTTGAATAAATCTCCTGAGGC  Raphanus sativus var. oleiformis
FD966982       <-- TCTCTCTTTATACCTTCTTTTGTTTTCTTTTTGAATAAATCTCCTGAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY896177       <-- TCTCTCTTTATACCTTCTTTTGTTTTCTTTTTGAATAAATCTCCTGAGGC  Raphanus raphanistrum subsp. maritimus
FD944129       <-- TCTCTCTTTATACCTTCTTTTGTTTTCTTTTTGAATAAATCTCCTGAGGC  Raphanus sativus cv Early Scarlet Globe
FD936887       <-- TCTCTCTTTATACCTTCTTTTGTTTTCTTTTTGAATAAATCTCCTGAGGC  Raphanus sativus var. oleiformis
EY906947       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754398       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538719       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761918       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               901    -    951
UN21724        --> TTTTGTTCTCCTGGAATGTCT-GTGCTTGAGAGCAAACATTTTGCTGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- TTTTGTTATCCTGGAATGTCT-GTGCTTGAGAGCAAACATTTTGCTGCAG  Raphanus sativus cv Early Scarlet Globe
EY902999       <-- TTTTGTTCTCCTGGAATGTCTTGTACTTGAGAGCAAACATGTTGCTGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542665       <-- TTTTGTTCTCCTGGAATGTCTTGTACTTGAGAGCAAACATGTTGCTGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD567368       <-- TTTTGTTACCCTGGAATGTCT-GTGCTTGAGAGCAAACATTTTGCTGCAG  Raphanus sativus var. oleiformis
FD966982       <-- TTTTGTTCTCCTGGAATGTCTTGTACTTGAGAGCAAACATGTTGCTGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY896177       <-- TTTTGTTATCCTGGAATGTCT-GTGCTTGAGAGCAAACATTTTGCTGCAG  Raphanus raphanistrum subsp. maritimus
FD944129       <-- TTTTGTTATCCTGGAATGTCT-GTGCTTGAGAGCAAACATTTTGCTGCAG  Raphanus sativus cv Early Scarlet Globe
FD936887       <-- TTTTGTTATCCTGGAATGTCT-GTGCTTGAGAGCAAACATTTTGCTGCAG  Raphanus sativus var. oleiformis
EY906947       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754398       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538719       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761918       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               951    -   1001
UN21724        --> CTTTTGTTGCAGTGTTTTCACTAAGGCCA-ATGTTTGTTACCGTCTTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- CTTTTGTTGCAGTGTTTTCACTAAGGCCA-ATGTTTGTTACt........  Raphanus sativus cv Early Scarlet Globe
EY902999       <-- CTGTTGT-CCAGTGTTTTCACT............................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542665       <-- CTGTTGT-CCAGTGTTTTCACTAAGGTCATTTGTTTGTTACC........  Raphanus raphanistrum subsp. raphanistrum (MS)
FD567368       <-- CTTTTGTTGCAGTGTTTTCACTAAGGCCA-ATGTTTGTTACtgttt....  Raphanus sativus var. oleiformis
FD966982       <-- CTGTTGT-CCAGTGTTTTCACTAAGGTCATTTGTTTGTTACCGTCTTAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY896177       <-- CTTTTGTTGCAGTGTTTTCACTAAGGCCA-ATGTTTGTTCCTGTCTaatg  Raphanus raphanistrum subsp. maritimus
FD944129       <-- CTTTTGTTGCAGTGTTTTCACTAAGGCCA-ATGTTTGTTACTGTCc....  Raphanus sativus cv Early Scarlet Globe
FD936887       <-- CTTTTGTTGCAGTGTTTTCACTAAGGCCA-ATGTTTGTT...........  Raphanus sativus var. oleiformis
EY906947       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754398       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538719       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761918       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               1001   -   1051
UN21724        --> GAGTAAAA..........................
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730628       <-- ..................................
EY902999       <-- ..................................
EV542665       <-- ..................................
FD567368       <-- ..................................
FD966982       <-- GAGTAAAAaaaaagcaaaatgaaatgagttttgc
EY896177       <-- agt...............................
FD944129       <-- ..................................
FD936887       <-- ..................................
EY906947       --> ..................................
EX754398       --> ..................................
EV538719       --> ..................................
EX761918       --> ..................................