1      -     51
UN21769        --> GGACGCTTTTCTCAATCTCTCTGTCGGAGAGAGAGAGAGAGACTCGATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- ..................................................
FD552785       <-- ..................................................
FD555093       <-- ..................................................
EV545013       <-- ..................................................
FD547788       <-- ..................................................
EV549561       --> GGACGCTTTTCTCAATCTCTCTGTCGGAGAGAGAGAGAGAGACTCGATAC
FD556480       --> ...ggaatctctctgtcggagagagaGAGAGAGAGAGAGAGACTCGATAC
FD559379       --> ......ggctctctgtcggagagagaGAGAGAGAGAGAGAGACTCGATAC
EX763840       --> ..................................................
FD551950       --> ..................................................
EX750389       --> ..................................................

               51     -    101
UN21769        --> TCACCGTCAAAA--GGAAGAGACTTTCGTGGTGGGTTTCCCGAGACTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- ..................................................
FD552785       <-- ..................................................
FD555093       <-- ..................................................
EV545013       <-- ..................................................
FD547788       <-- ..................................................
EV549561       --> TCACCGTCAAAAAAGGAAGATACTTTCGTGGTGGGTTTCCCGAGACTTGG
FD556480       --> TCACCGTCAAAA--GGAAGAGACTTTCGTGGTGGGTTTCCCGAGACTTGG
FD559379       --> TCACCGTCAAAA--GGAAGAGACTTTCGTGGTGGGTTTCCCGAGACTTGG
EX763840       --> ..................................................
FD551950       --> ..................................................
EX750389       --> ..................................................

               101    -    151
UN21769        --> AGAAAGAGATGAGTTTTCGAGATTTAGAGGCGGGAAGAGGAAGATCATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- ..................................................
FD552785       <-- ..................................................
FD555093       <-- ..................................................
EV545013       <-- ..................................................
FD547788       <-- ..................................................
EV549561       --> AGAAAGAGATGAGTTTTCGAGATTTAGAGGCGGGAAGAGGAAGATCATTA
FD556480       --> AGAAAGAGATGAGTTTTCGAGATTTAGAGGCGGGAAGAGGAAGATCATTA
FD559379       --> AGAAAGGGATGAGTTT-CGAGATTTAGAGGCGGGAAGAGGAAGATCATTA
EX763840       --> ..................................................
FD551950       --> ..................................................
EX750389       --> ..................................................

               151    -    201
UN21769        --> GCTTCGTCAAGGAACATCAATGGAGGAGGAGTTCGACAAGACACGACGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- ..................................................
FD552785       <-- ..................................................
FD555093       <-- ..................................................
EV545013       <-- ..................................................
FD547788       <-- ..................................................
EV549561       --> GCTTCGTCACGGAACATCGATGGAGGAGGAGGAGGACAAGACACGACGCA
FD556480       --> GCTTCGTCAAGGAACATCAATGGAGGAGGAGTTCGACAAGACACGACGCA
FD559379       --> GCTTCGTCAAGGAACATCAATGGAGGAGGAGTTCGACAAGACACGACGCA
EX763840       --> ..................................................
FD551950       --> ..................................................
EX750389       --> ..................................................

               201    -    251
UN21769        --> AGCCGTAGCTTCTGGTATTTTTCAGATCAACACAAGCGTCTCTAGCTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- ..................................................
FD552785       <-- ..................................................
FD555093       <-- ..................................................
EV545013       <-- ..................................................
FD547788       <-- ..................................................
EV549561       --> AGCCGTAGCCTCCGGTATTTTTCAGATCAACACAAGCGTCTCTAGCTTCC
FD556480       --> AGCCGTAGCTTCTGGTATTTTTCAGATCAACACAAGCGTCTCTAGCTTCC
FD559379       --> AGCCGTAGCTTCTGGTATTTTTCAGACCAACACAAGCGTCTCTAGCTTCC
EX763840       --> ..................................................
FD551950       --> ..................................................
EX750389       --> ..................................................

               251    -    301
UN21769        --> AACGACTCGTCAACACTCTCGGTACTCCCAAAGACACCCCCGAGCTCCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- ..................................................
FD552785       <-- ..................................................
FD555093       <-- ..................................................
EV545013       <-- ..................................................
FD547788       <-- ..................................................
EV549561       --> AACGACTCGTCAACACTCTCGGTACTCCCAAAGACACCCCCGAGCTCCGA
FD556480       --> AACGACTCGTCAACACTCTCGGTACTCCCAAAGACACCCCCGAGCTCCGA
FD559379       --> AACGACTCGTCAACACTCTCGGTACTCCCAAAGACACCCCCGAGCTCCGA
EX763840       --> ..................................................
FD551950       --> ..................................................
EX750389       --> ..................................................

               301    -    351
UN21769        --> GATAAGCTGCACAAGGCAAGACTATATATCGGACAGTTAGTGAAAGACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- .....................................gAGTGAA-GACAC
FD552785       <-- ..................................................
FD555093       <-- ..................................................
EV545013       <-- ..................................................
FD547788       <-- ..................................................
EV549561       --> GATAAGCTGCACAACACAAGACTATATATCGGACAGTTAGTGAAAGACAC
FD556480       --> GATAAGCTGCACAAGGCAAGACTATATATCGGACAGTTAGTGAAAGACAC
FD559379       --> GATAAGCTGCACAAGGCAAGACTATATATCGGACAGTTAGTGAAAGACAC
EX763840       --> .....................................gAGTGAAAGACAC
FD551950       --> ........................................ggatactcac
EX750389       --> ..................................................

               351    -    401
UN21769        --> AGCAGCTAAACTTAGAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- AGCAGCTAAACTTAGAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTTA
FD552785       <-- ..................................................
FD555093       <-- ..................................................
EV545013       <-- ..................................................
FD547788       <-- ..................................................
EV549561       --> AGCAACTAAACTTAGAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTTA
FD556480       --> AGCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTTA
FD559379       --> AGCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTTA
EX763840       --> AGCAGCTAAACTTAGAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTTA
FD551950       --> cgtcaaaaaaggaAGAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTTA
EX750389       --> ..................................................

               401    -    451
UN21769        --> ATCAAAAGAAGAAGATTGTGGATGCTAAGCTTGCAAAAGACTTTCAATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- -TCAAAAGAAGAAGATTGTGGATGCTAAGCTTGCAAAAGACTTTCAATCT
FD552785       <-- ..................................................
FD555093       <-- ..................................................
EV545013       <-- ..................................................
FD547788       <-- ..................................................
EV549561       --> ATCAAAAGAAGAAGATTGTGGATGCTAAGCTTGCAAAAGACTTTCAATCT
FD556480       --> ATCAAAAGAAGAAGATTGTGGATGCTAAGCTTGCAAAAGACTTTCAATCT
FD559379       --> ATCAAAAGAAGAAGATTGTGGATGCTAAGCTTGCAAAAGACTTTCAATCT
EX763840       --> ATCAAAAGAAGAAGATTGTGGATGCTAAGCTTGCAAAAGACTTTCAATCT
FD551950       --> ATCAAAAGAAGAAGATTGTGGATGCTAAGCTTGCAAAAGACTTTCAATCT
EX750389       --> ..................................................

               451    -    501
UN21769        --> GTATTGAAAGAGTTTCAAAAGGCTCAGCGTCTCGCTGCTGAAAGAGAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- GTATTGAAAGAGTTTCAAAAGGCTCAGCGTCTCGCTGCTGAAAGAGAAAC
FD552785       <-- ..............TCAAAAGGCTCAGCGTCTCGCTGCTGAAAGAGAAAC
FD555093       <-- ..................................................
EV545013       <-- ..................................................
FD547788       <-- ..................................................
EV549561       --> GTATTGAAAGAGTTTCAAAAGGCTCAGCGTCTCGCTGCTGAAAGAGAAAC
FD556480       --> GTATTGAAAGAGTTTCAAAAGGCTCAGCGTCTCGCTGCTGAAAGAGAAAC
FD559379       --> GTATTGAAAGAGTTTCAAAAGGCTCAGCGTCTCGCTGCTGAAAGAGAAAC
EX763840       --> GTATTGAAAGAGTTTCAAAAGGCTCAGCGTCTCGCTGCTGAAAGAGAAAC
FD551950       --> GTATTGAAAGAGTTTCAAAAGGCTCAGCGTCTCGCTGCTGAAAGAGAAAC
EX750389       --> ..................................................

               501    -    551
UN21769        --> CGTGTATGCTCCTCTTGTGACCCTACCATCTCCTCCTTCTAGCTATACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- CGTGTATGCTCCTCTTGTGACCCTACCATCTCCTCCTTCTAGCTATACAG
FD552785       <-- CGTGTATGCTCCTCTTGTGACCCTACCATCTCCTCCTTCTAGCTATACAG
FD555093       <-- .......................................TAGCTATACAG
EV545013       <-- ..................................................
FD547788       <-- ..................................................
EV549561       --> CGTGTATGCTCCTCTTGTGACCCTACCATCTCCTCCTTCTAGCTATACAG
FD556480       --> CGTGTATGCTCCTCTTGTGACCCTACCATCTCCTCCTTCTAGCTATACAG
FD559379       --> CGTGTATGCTCCTCTTGTGACCCTACCATCTCCTCCTTCTAGCTATACAG
EX763840       --> CGTGTATGCTCCTCTTGTGACCCTACCATCTCCTCCTTCTAGCTATACAG
FD551950       --> CGTGTATGCTCCTCTTGTGACCCTACCATCTCCTCCTTCTAGCTATACAG
EX750389       --> ..................................................

               551    -    601
UN21769        --> CCAGTGAGATAGGTGTGAATGCAGATAAGCATCAAGAGCAGCGTGCGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- CCAGTGAGATAGGTGCGAATGCAGATAAGCATCAAGAGCAGCGTGCGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552785       <-- CCAGTGAGATAGATGTGAATGCAGATAAGCATCAAGAGCAGCGTGCGCTT  Raphanus raphanistrum subsp. landra
FD555093       <-- CCAGTGAGATAGATGTGAATGCAGATAAGCATCAAGAGCAGCGTGCGCTT  Raphanus raphanistrum subsp. landra
EV545013       <-- ...............................................CTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547788       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549561       --> CCAGTGAGATAGGTGCGAATGCAGATAAGCATCAAGAGCAGCGTGCGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556480       --> CCAGTGAGATAGATGTGAATGCAGATAAGCATCAAGAGCAGCGTGCGCTT  Raphanus raphanistrum subsp. landra
FD559379       --> CCAGTGAGATAGATGTGAATGCAGATAAGCATCAAGAGCAGCGTGCGCTT  Raphanus raphanistrum subsp. landra
EX763840       --> CCAGTGAGATAGGTGCGAATGCAGATAAGCATCAAGAGCAGCGTGCGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551950       --> CCAGTGAGATAGGTGCGAATGCAGATAAGCATCAAGAGCAGCGTGCGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750389       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN21769        --> CTTGTTGAATCAAATAGACAAGAACTTGTACTGTTGGACAATGAGATTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- CTTGTTGAATCAAATAGACAAGAACTTGTACTGTTGGACAATGAGATTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552785       <-- CTTGTTGAATCAAAAAGACAAGAATTTGTACTGTTGGACAATGAGATTGC  Raphanus raphanistrum subsp. landra
FD555093       <-- CTTGTTGAATCAAAAAGACAAGAATTTGTACTGTTGGACAATGAGATTGC  Raphanus raphanistrum subsp. landra
EV545013       <-- CTTGTTGAATCAAATAGACAAGAACTTGTACTGTTGGACAATGAGATTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547788       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549561       --> CTTGTTGAATCAAATAGACAAGAACTTGTACTGTTGGACAATGAGATTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556480       --> CTTGTTGAATCAAAAAGACAAGAATTTGTACTGTTGGACAATGAGATTGC  Raphanus raphanistrum subsp. landra
FD559379       --> CTTGTTGAATCAAAAAGACAAGAATTTGTACTGTTGGACAATGAGATTGC  Raphanus raphanistrum subsp. landra
EX763840       --> CTTGTTGAATCAAATAGACAAGAACTTGTACTGTTGGACAATGAGATTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551950       --> CTTGTTGAATCAAATAGACAAGAACTTGTACTGTTGGACAATGAGATTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750389       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN21769        --> GTTTAATGAGGCTGTTATTGAAGAAAGAGAGCAAGGGATAGAAGAAATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- GTTTAATGAGGCTGTTATTGAAGAAAGAGAGCAAGGGATAGAAGAAATCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552785       <-- GTTTAATGAGGCTATTATTGAAGAAAGAGAGCAAGGGATAGAAGAAATCC  Raphanus raphanistrum subsp. landra
FD555093       <-- GTTTAATGAGGCTATTATTGAAGAAAGAGAGCAAGGGATAGAAGAAATCC  Raphanus raphanistrum subsp. landra
EV545013       <-- GTTTAATGAGGCTGTTATTGAAGAAAGAGAGCAAGGGATAGAAGAAATCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547788       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549561       --> GTTTAATGAGGCTGTTATTGAAGAAAGAGAGCAAGGGATAGAAGAAATCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556480       --> GTTTAATGAGGCTATTATTGAAGAAAGAGAGCAAGGGATAGAAGAAATCC  Raphanus raphanistrum subsp. landra
FD559379       --> GTTTAATGAGGCTATTATTGAAGAAAGAGAGCAAGGGATAGAAGAA-TCC  Raphanus raphanistrum subsp. landra
EX763840       --> GTTTAATGAGGCTGTTATTGAAGAAAGAGAGCAAGGGATAGAAGAAATCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551950       --> GTTTAATTAGGCTGTTATTGAAGAAAGAGAGCAAGGGATAGAAGAAATCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750389       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN21769        --> AGCAACAAATTGGCGAGGTGCATGAAATCTTCAAAGACTTGGCAGTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- AGCAACAAATTGGCGAGGTGCATGAAATCTTCAAAGACTTGGCAGTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552785       <-- AGCAACAAATCGGGGAGGTGCATGAAATCTTCAAATACTTGGCAGTGTTG  Raphanus raphanistrum subsp. landra
FD555093       <-- AGCAACAAATCGGGGAGGTGCATGAAATCTTCAAAGACTTGGCAGTGTTG  Raphanus raphanistrum subsp. landra
EV545013       <-- AGCAACAAATTGGCGAGGTGCATGAAATCTTCAAAGACTTGGCAGTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547788       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549561       --> AGCAACAAATTGGCGAGGTGCATGAAATCTTCAAAGACTTGGCAGTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556480       --> AGCAACAAATCGGGGAGGTGCATGAAATCTTCAA-TACTTGGCAGTGTTG  Raphanus raphanistrum subsp. landra
FD559379       --> AGCA-CAAATCGGGGAGGTGCATGAA-TCTTCAAga..............  Raphanus raphanistrum subsp. landra
EX763840       --> AGCAACAAATTGGCGAGGTGCATGAAATCTTCAAAGACTTGGCAGTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551950       --> AGCAACAAATTGGCGAGGTGCATGAAATCTTCAAAGACTTGGCAGTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750389       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN21769        --> GTACATGATCAAGGAACCATGATTGATGATATCAGTACTCACATTGATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- GTACATGATCAAGGAACCATGATTGATGATATCAGTACTCACATTGATAA
FD552785       <-- GTACATGATCAAGGAACCATGATTGATGATATCAGTACTCACATTGATAA
FD555093       <-- GTACATGATCAAGGAACCATGATTGATGATATCAGTACTCACATTGATAA
EV545013       <-- GTACATGATCAAGGAACCATGATTGATGATATCAGTACTCACATTGATAA
FD547788       <-- ..................................................
EV549561       --> GTACATG...........................................
FD556480       --> GTACATGATCAAG-AACCATGATTGATGATATCAGTACTCACAT......
FD559379       --> ..................................................
EX763840       --> GTACATGATCAAGGAACCATGATTGATGATATCAGTACTCACATTGATAA
FD551950       --> GTACATGATCAAGGAACCATGATTGATGATATCAGTACTCACATTGATAA
EX750389       --> ..................................................

               801    -    851
UN21769        --> CTCCCACGCTGCAACTGCACAAGGAAAATCCCATCTCGCAAAAGCCTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- CTCCCACGCTGCAACTGCACAAGGAAAATCCCATCTCGCAAAAGCCTCAA
FD552785       <-- CTCCCACGCTGCAACTGCACAAGGAAAATCCCATCTCGCAAAAGCCTCAA
FD555093       <-- CTCCCACGCTGCAACTGCACAAGGAAAATCCCATCTCGCAAAAGCCTCAA
EV545013       <-- CTCCCCCGCTGCAACTGCCCAAGGAAAATCCCATCTCGCAAAAGCCTCAA
FD547788       <-- ..................................................
EV549561       --> ..................................................
FD556480       --> ..................................................
FD559379       --> ..................................................
EX763840       --> CTCCCACGCTGCAACTGCACAAGGAAAATCCCATCTCGCAAAAGCCTCAA
FD551950       --> CTCCCACGCTGCAACTGCACAAGGAAAATCCCATCTCGCAAAAGCCTCAA
EX750389       --> .........gGCAACCGCACAAGGAAAATCCCATCTCGCAAAAGCCTCAA

               851    -    901
UN21769        --> AGACGCAAAGATCGAACTCTTCCCTGACGTGCTTGCTCTTGGTGATTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- AGACGCAAAGATCGAACTCTTCCCTGACGTGCTTGCCCTTGGTGATTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552785       <-- AGACACAAAGATCGAACTCTTCCCTGACGTGCTTGCTCTTGGTGATTTTT  Raphanus raphanistrum subsp. landra
FD555093       <-- AGACACAAAGAT-GAACTCTTCCCTGACGTGCTTGCTCTTGGTGATTTTT  Raphanus raphanistrum subsp. landra
EV545013       <-- AGACGCAAAGATCGAACTTTTCCCTGACGGGCTTGCTCTTGGTGATTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547788       <-- ..............AACTCTTCCCTGACGTGCTTGCTCTTGGTGATTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549561       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556480       --> ..................................................  Raphanus raphanistrum subsp. landra
FD559379       --> ..................................................  Raphanus raphanistrum subsp. landra
EX763840       --> AGACGCAAAGATCGAACTCTTCCCTGACGTGCTTGCCCTTGGTGATTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551950       --> AGACGCAAAGATCGAACTCTTCCCTGACGTGCTTGCTCTTGGTGATTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750389       --> AGACACAAAGATCGAACTCTTCCCTGACGTGCTTGCTCTTGGTGATTTTT  Raphanus raphanistrum subsp. maritimus

               901    -    951
UN21769        --> GGTATCGTGCTCCTGATTGTCATCATAGTGCTCGCGGTTTGAGTGCTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- GGTATCGTGCTCCTGATTGTCATCATAGTGCTCGCGGTTTGAGTGCTGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552785       <-- GGTATCGTGCTCCTGATTGTTATCGTAGTGCTTGCGGTTTGAGTGCTGCA  Raphanus raphanistrum subsp. landra
FD555093       <-- GGTATCGTGCTCCTGATTGTTATCGTAGTGCTTGCGGTTTGAGTGCTGCA  Raphanus raphanistrum subsp. landra
EV545013       <-- GGTATCGTGCTCCTGATTGTCATCATAGTGCTCGCGGTTTGAGTGCTGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547788       <-- GGTATCGTGCTCCTGATTGTCATCATAGTGCTCGCGGTTTGAGTGCTGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549561       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556480       --> ..................................................  Raphanus raphanistrum subsp. landra
FD559379       --> ..................................................  Raphanus raphanistrum subsp. landra
EX763840       --> GGTATCGTGCTCCTGATTGTCATCATAGTGCTCGCGGTTTGAGTGCTGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551950       --> GGTATCGTGCTCCTGATTGTCATCATAGTGCTCGCGGTTTGAGTGCTGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750389       --> GGTATCGTGCTCCTGATTGTTATCGTAGTGCTTGCGGTTTGAGTGCTGCA  Raphanus raphanistrum subsp. maritimus

               951    -   1001
UN21769        --> TCATCAATCAAGAAAGCATTGATGAGTGCCTGGTTGTTCAATTTTCTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- TCATCAATCAAGAAAGCATTGATGAGTGCCTGGTTGTTCAATTTTCTCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552785       <-- TCATCAATCAAGAAAGCATTGATGAGTGCCTGGTTGTTCAATTGTCTCCT  Raphanus raphanistrum subsp. landra
FD555093       <-- TCATCAATCAAGAAAGCATTGATGAGTGCCTGGTTGTTCAATTGTCTCCT  Raphanus raphanistrum subsp. landra
EV545013       <-- TCATCAATCAAGAAAGCATTGATGAGTGCCTGGTTGTTCAATTTTCTCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547788       <-- TCATCAATCAAGAAAGCATTGATGAGTGCCTGGTTGTTCAATTTTCTCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549561       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556480       --> ..................................................  Raphanus raphanistrum subsp. landra
FD559379       --> ..................................................  Raphanus raphanistrum subsp. landra
EX763840       --> TCATCAATCAAGAAAGCATTGATGAGTGCCTGGTTGTTCAATTTTCTCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551950       --> TCATCAATCAAGAAAGCATTGATGAGTGCCTGGTTGTTCAATTTTCTCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750389       --> TCATCAATCAAGAAAGCATTGATGAGTGCCTGGTTGTTCAATTGTCTCCT  Raphanus raphanistrum subsp. maritimus

               1001   -   1051
UN21769        --> CATGGCTCTATCCGTTGCTACCATTTAGTCTGTTGGTCCTTTTGTCTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- CATGGCTCTATCCGTTGCTACCATTTAGTCTGTTGGTCCTTTTGTCTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552785       <-- CATGGCTCTATCCGTTGCTACCATTTAGTCTGTTGGTCTTTTTGTCTCTT  Raphanus raphanistrum subsp. landra
FD555093       <-- CATGGCTCTATCCGTTGCTACCATTTAGTCTGTTGGTCTTTTTGTCTCTT  Raphanus raphanistrum subsp. landra
EV545013       <-- CATGGCTCTATCCGTTGCTACCATTTAGTCTGTTGGTCCTTTTGTCTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547788       <-- CATGGCTCTATCCGTTGCTACTATTTAGTCTGTTGGTCCTTTTGTCTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549561       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556480       --> ..................................................  Raphanus raphanistrum subsp. landra
FD559379       --> ..................................................  Raphanus raphanistrum subsp. landra
EX763840       --> CATGGCTCTATCCGTTGCTACCATTTAGTCTGTTGGTCCTTTTGTCTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551950       --> CATGGCTCTATCCGTTGCTACTATTTAGTCTGTTGGTCCTTTTGTCTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750389       --> CATGGCTCTATCCGTTGCTACCATTTAGTCTGTTGGTCTTTTTGTCTCTT  Raphanus raphanistrum subsp. maritimus

               1051   -   1101
UN21769        --> GTTATTGAGTATATAGAATAGTTCCCTTTGGTTGGTTTGGTCTGTGGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- GTTATTGAGTATATAGAATAGTTCCCTTTGGTTGGTTTGGTCTGTGGGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552785       <-- GTTATTGAGTATATAGAGT-GTTCCCTTTGGTTGGTTTGGTCTGTGGGTA  Raphanus raphanistrum subsp. landra
FD555093       <-- GTTATTGAGTATATAGAGT-GTTCCCTTTGGTTGGTTTGGTCTGTGGGTA  Raphanus raphanistrum subsp. landra
EV545013       <-- GTTATTGAGTATATAGAATAGTTCCCTTTGGTTGGTTTGGTCTGTGGGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547788       <-- GTTATTGAGTATATAGAATAGTTCCCTTTGGTTGGTTTGGTCTGTGGGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549561       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556480       --> ..................................................  Raphanus raphanistrum subsp. landra
FD559379       --> ..................................................  Raphanus raphanistrum subsp. landra
EX763840       --> GTTATTGAGTATATAGAATAGTTCCCTTTGGTTGGTTTGGTCTGTGGGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551950       --> GT-ATTGAGTATATAGAATAGTTCCCTTTGGTTGGTTTGGTCTGTGGGT.  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750389       --> GTTATTGAGTATATAGAGT-GTTCCCTTTGGTTGGTTTGGTCTGTGGGTA  Raphanus raphanistrum subsp. maritimus

               1101   -   1151
UN21769        --> TTGGGTTTTGTAAGAAAGTGTGTTACTCAGCGTTGTCTATGTAAGACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- TTGGGTTTTGTAAGAAAGTGTGTTACTCAGCGTTGTCTATGTAAGACAAT
FD552785       <-- TTGG-TTTTGTAAGAAAGTGTGTTACTCAGCGTTGTCTATGTAAGACAAT
FD555093       <-- TTGGGTTTTGTAAGAAAGTGTGTTACTCAGCGTTGTCTATGTAAGACAAT
EV545013       <-- TTGGGTTTTGTAAGAAAGTGTGTTACTCAGCGTTGTCTATGTAAGACAAT
FD547788       <-- TTGGGTTTTGTAAGAAAGTGTGTTACTCAGCGTTGCCTATGTAAGACAAT
EV549561       --> ..................................................
FD556480       --> ..................................................
FD559379       --> ..................................................
EX763840       --> TTGGGTTT-GTAAGAAAGTGTGTTACTCAGCGTTGTCTATGT........
FD551950       --> ..................................................
EX750389       --> TTGGGTTTTGTAAGAAAGTGTGTTACTCAGCGTTGTCTATGTAAGACAAT

               1151   -   1201
UN21769        --> TCTTCTGTTGAAGACCAGAGTGATTGATAAAAGTGAAATCTTCTATTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- TCTTCTGTTGAAGACCAGAGTGATTGATAAAAGTGAAATCTTCTAT....
FD552785       <-- TCTTCTGTTGAAGACCAGAGTGATTGATAAAAGTGAAAcc..........
FD555093       <-- TCTTCTGTTGAAGACCAGAGTGATTGATAAAAGTGAAATCTTCc......
EV545013       <-- TTTTCTGTTGAAGACCAGAGTGATTGATAAAAGTGAAATt..........
FD547788       <-- TTTTCTGTTGAAGACCAGAGTGATTGATAAAAGTGAAATt..........
EV549561       --> ..................................................
FD556480       --> ..................................................
FD559379       --> ..................................................
EX763840       --> ..................................................
FD551950       --> ..................................................
EX750389       --> TCTTCTGTTGAAGACCAGAGTGATTGATAAAAGTGAAATCTTCTATTTGT

               1201   -   1251
UN21769        --> GTTTTTTTCTTAAAAATGGAATTCTTAGTGGTCATGAAGCTAAGTGAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767874       <-- ..................................................
FD552785       <-- ..................................................
FD555093       <-- ..................................................
EV545013       <-- ..................................................
FD547788       <-- ..................................................
EV549561       --> ..................................................
FD556480       --> ..................................................
FD559379       --> ..................................................
EX763840       --> ..................................................
FD551950       --> ..................................................
EX750389       --> GTTTTTTTCTTAAAAATGGAATTCTTAGTGGTCATGAAGCTAAGTGAATC

               1251   -   1301
UN21769        --> T
                   ~
EX767874       <-- .
FD552785       <-- .
FD555093       <-- .
EV545013       <-- .
FD547788       <-- .
EV549561       --> .
FD556480       --> .
FD559379       --> .
EX763840       --> .
FD551950       --> .
EX750389       --> T