RadishBase

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Alignment for radish unigene UN21817

               1      -     51
UN21817        --> GGATACAACGAGTTCCAAAAAGAAAAAAGC-AAAAAG-TAAAAA-GAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY910717       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD968010       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975923       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549753       --> GGATACAACGAGTTCCAAAAAGAAAAAAGC-AAAAAG-CAAAAAAGAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569227       --> .....ggatacaacagagttccAAAAAAGCAAAAAAG-AAAAAA-GAACA  Raphanus raphanistrum subsp. landra
EX772564       --> .....ggatacaacagagttccAAAAAAGCAAAAAAG-AAAAAA-GAACA  Raphanus raphanistrum subsp. landra
EX886436       --> .....ggatacaacagagttccAAAAAAGC-AAAAAG-TAAAAA-GAACA  Raphanus sativus var. oleiformis
EY914730       --> .....ggatacaacagagttccAAAAAAGC-AAAAAG-TAAAAA-GAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921661       --> ggaaactatacaacagagttccAAAAAAGCAAAAAAG-AAAAAA-GAACA  Raphanus raphanistrum subsp. landra
FD938728       --> ....ggatacaacagagttccaAAAAAAGC-AAAAAG-TAAAAA-GAACA  Raphanus sativus var. oleiformis
FD939163       --> .....ggatacaacagagttccAAAAAAGC-AAAAAG-TAAAAA-GAACA  Raphanus sativus var. oleiformis
FD972031       --> ......gatacaacagagttccAAAAAAGC-AAAAAGCAAAAAA-GAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD979955       --> .....ggatacaacagagttccAAAAAAGC-AAAAAG-TAAAAA-GAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750516       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               51     -    101
UN21817        --> CAATGGCTTCTAGAGCCTCTCTTCCTCTCGCCGCCTCCTTCCTCCTCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY910717       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD968010       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975923       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549753       --> CAATGGCTTCTAGAGCCTCTCTTCCTCTCGCCGCCTCCTTCCTCCTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569227       --> CAATGGCTTCTAGAGCCTCTCTTCCTCTCGCCGCCTCCTTCCTCCTCCTT  Raphanus raphanistrum subsp. landra
EX772564       --> CAATGGCTTCTAGAGCCTCTCTTCCTCTCGCCGCCTCCTTCCTCCTCCTT  Raphanus raphanistrum subsp. landra
EX886436       --> CAATGGCTTCTAGAGCATCTCTTCCTCTCGCCGCCTCCTTCCCCCTCCTT  Raphanus sativus var. oleiformis
EY914730       --> CAATGGCTTCTAGAGCATCTCTTCCTCTCGCCGCCTCCTTCCTCCTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921661       --> CACTGGCTTCTAGAGCCTCTCTTCCTCTCGCCGCCTCCTTCCTCCTCCTT  Raphanus raphanistrum subsp. landra
FD938728       --> CAATGGCTTCTAGAGCATCTCTTCCTCTCGCCGCCTCCTTCCTCCTCCTT  Raphanus sativus var. oleiformis
FD939163       --> CAATGGCTTCTAGAGCATCTCTTCCTCTCGCCGCCTCCTTCCTCCTCCTT  Raphanus sativus var. oleiformis
FD972031       --> CAATGGCTTCTAGAGCCTCTCTTCCTCTCGCCGCCTCCTTCCTCCTCCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD979955       --> CAATGGCTTCTAGAGCATCTCTTCCTCTCGCCGCCTCCTTCCTCCTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750516       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               101    -    151
UN21817        --> CTCATCTCTTCCTCCTTCGCCGCTGACACAGGCCGTCTCTTTCTCACCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- ..................................................
EY910717       <-- ..................................................
FD968010       <-- ..................................................
FD975923       <-- ..................................................
EV549753       --> CTCGTCTCTTCCTCCTTCGCCGCTGACACCGGCCGTCTCTTTCTCACCGT
EV569227       --> CTCATCTCTTCCTCCTTCGCCGCTGACACAGGCCGTCTCTTTCTCACCGT
EX772564       --> CTCATCTCTTCCTCCTTCGCCGCTGACACAGGCCGTCTCTTTCTCACCGT
EX886436       --> CTCATCTCTTCCTCCTTCGCCGCTGACACAGGCCGTCTCTTTCTCACCGT
EY914730       --> CTCATCTCTTCCTCCTTCGCCGCTGACACAGGCCGTCTCTTTCTCACCGT
EY921661       --> CTCATCTCTTCCTCCTTCGCCGCTGACACAGGCCGTCTCTTTCTCACCGT
FD938728       --> CTCATCTCTTCCTCCTTCGCCGCTGACACAGGCCGTCTCTTTCTCACCGT
FD939163       --> CTCATCTCTTCCTCCTTCGCCGCTGACACAGGCCGTCTCTTTCTCACCGT
FD972031       --> CTCATCTCTTCCTCCTTCGCCGCTGACACCGGCCGTCTCTTTCTCACCGT
FD979955       --> CTCATCTCTTCCTCCTTCGCCGCTGACACAGGCCGTCTCTTTCTCACCGT
EX750516       --> ..................................................

               151    -    201
UN21817        --> CGTCAACCACTGTCCCTTCACCGTCTGGCCAGCCATTCAGCCCAACGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- ..................................................
EY910717       <-- ..................................................
FD968010       <-- ..................................................
FD975923       <-- ..................................................
EV549753       --> CGTCAACCACTGTCCCTTCGCCGTCTGGCCAGCCATTCAGCCCAACGCCG
EV569227       --> CGTCAACCACTGTCCCTTCACCGTCCGGTCGGCCATTCAGCCCAACGCCG
EX772564       --> CGTCAACCACTGTCCCTTCACCGTCTGGCCAGCCATTCAGCCCAACGCCG
EX886436       --> CGTCAACCACTGTCCCTTCACCGTCTGGCCAGCCATTCAGCCCAACGCCG
EY914730       --> CGTCAACCACTGTCCCTTCACCGTCTGGCCAGCCATTCAGCCCAACGCCG
EY921661       --> CGTCAACCACTGTCCCTTCACCGTCTGGCCAGCCATTCAGCCCAACGCCG
FD938728       --> CGTCAACCACTGTCCCTTCACCGTCTGGCCAGCCATTCAGCCCAACGCCG
FD939163       --> CGTCAACCACTGTCCCTTCACCGTCTGGCCAGCCATTCAGCCCAACGCCG
FD972031       --> CGTCAACCACTGCCCCTTCACCGTCTGGCCAGCCATTCAGCCCAACGCCG
FD979955       --> CGTCAACCACTGTCCCTTCACCGTCTGGCCAGCCATTCAGCCCAACGCCG
EX750516       --> ..................................................

               201    -    251
UN21817        --> GCCACCCCGTCCTCGAGAAAGGTGGCTTCGCTCTCCCAACCAACACCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- ...............AGAAAGGTGGCTTCGTTCTCCCAACCAACACCCAC
EY910717       <-- .............................................CCCCC
FD968010       <-- ..................................................
FD975923       <-- ..................................................
EV549753       --> GCCGCCCCGTCCTCGAGAAAGGTGGCTTCGCTCTCCCAACCAACACCCAC
EV569227       --> GCCACCCCGTCCTCGAGAAAGGTGGCTTCGCTCTCCCAACCAACACCCAC
EX772564       --> GCCACCCCGTCCTCGAGAAAGGTGGCTTCGTTCTCCCAACCAACACCCAC
EX886436       --> GCCACCCCGTCCTCGAGAAAGGTGGCTTCGCTCTCCCAACCAACACCCAC
EY914730       --> GCCACCCCGTCCTCGAGAAAGGTGGCTTCGCTCTCCCAACCAACACCCAC
EY921661       --> GCCACCCCGTCCTCGAGAAAGGTGGCTTCGCTCTCCCAACCAACACCCAC
FD938728       --> GCCACCCCGTCCTCGAGAAAGGTGGCTTCGCTCTCCCAACCAACACCCAC
FD939163       --> GCCACCCCGTCCTCGAGAAAGGTGGCTTCGCTCTCCCAACCAACACCCAC
FD972031       --> GCCACCCCGTTCTCGAGAAAGGTGGCTTCGCTCTCC-AACCAACACCCAC
FD979955       --> GCCACCCCGTCCTCGAGAAAGGTGGCTTCGCTCTCCCAACCAACACCCAC
EX750516       --> ..................................................

               251    -    301
UN21817        --> CGCTCTTTCTCCGCACCAACCTCCCACTGGTCCGGTCGCATCTGGGGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- CGCTCTTTCCCCGCGCCAACCTCCCACTGGTCCGGTCGCATCTGGGGTCG  Raphanus raphanistrum subsp. landra
EY910717       <-- CGCTCTTTCTCCGCACCAACCTCCCACTGGTCCGGTCGCATCTGGGGCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD968010       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975923       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549753       --> CGCTCCTTCTCCGCACCAACCACCCACTGGTCCGGTCGCATCTGGGGTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569227       --> CGCTCTTTCCCCGCGCCAACCTCCCACTGGTCCGGTCGCATCTGGGGTCG  Raphanus raphanistrum subsp. landra
EX772564       --> CGCTCTTTCCCCGCGCCAACCTCCCACTGGTCCGGTCGCATCTGGGGTCG  Raphanus raphanistrum subsp. landra
EX886436       --> CGCTCTTTCTCCGCACCAACCTCCCACTGGTCCGGTCGCATCTGGGGCCG  Raphanus sativus var. oleiformis
EY914730       --> CGCTCTTTCTCCGCACCAACCTCCCACTGGTCCGGTCGCATCTGGGGCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921661       --> CGCTCTTTCCCCGCGCCAACCTCCCACTGGTCCGGTCGCATCTGGGGTCG  Raphanus raphanistrum subsp. landra
FD938728       --> CGCTCTTTCTCCGCACCAACCTCCCACTGGTCCGGTCGCATCTGGGGCCG  Raphanus sativus var. oleiformis
FD939163       --> CGCTCTTTCTCCGCACCAACCTCCCACTGGTCCGGTCGCATCTGGGGCCG  Raphanus sativus var. oleiformis
FD972031       --> CGCTCCTTCTCCGCACCAACCTCCCACTGGTCCGGTCGCATCTGGGGTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD979955       --> CGCTCTTTCTCCGCACCAACCTCCCACTGGTCCGGTCGCATCTGGGGCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750516       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               301    -    351
UN21817        --> AACCGGCTGCTCCCACTACAACGGCAAATTCTCCTGCGTCACCGGAGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- AACCGGCTGCTCCCACTACAACGGCAAATTCTCCTGCGTCACCGGAGACT
EY910717       <-- AACCGGCTGCTCCCACTACAACGGCAAATTCTCCTGCGTCACCGGAGACT
FD968010       <-- ..................................................
FD975923       <-- ..................................................
EV549753       --> AACCGGCTGCTCCCACTACAACGGCAAATTCTCCTGCGTCACCGGAGACT
EV569227       --> AACCGGCTGCTCCCACTACAACGGCAAATTCTCCTGCGTCACCGGAGACT
EX772564       --> AACCGGCTGCTCCCACTACAACGGCAAATTCTCCTGCGTCACCGGAGACT
EX886436       --> AACCGGCTGCTCCCACTACAACGGCAAATTCTCCTGCGTCACCGGAGACT
EY914730       --> AACCGGCTGCTCCCACTACAACGGCAAATTCTCCTGCGTCACCGGAGACT
EY921661       --> AACCGGCTGCTCCCACTACAACGGCAAATTCTCCTGCGTCACCGGAGACT
FD938728       --> AACCGGCTGCTCCCACTACAACGGCAAATTCTCCTGCGTCACCGGAGACT
FD939163       --> AACCGGCTGCTCCCACTACAACGGCAAATTCTCCTGCGTCACCGGAGACT
FD972031       --> AACCGGCTGCTCCCACTACAACGGCAAATTCTCCTGCGTCACCGGAGACT
FD979955       --> AACCGGCTGCTCCCACTACAACGGCAAATTCTCCTGCGTCACCGGAGACT
EX750516       --> ..................................................

               351    -    401
UN21817        --> GCGGAAACCGTCTCGAGTGCAACGGTCTCGGCGGCGCAACCCCGGCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- GCGGAAACCGTCTCGAGTGCAACGGTCTCGGCGGCGCAACCCCCGCTTCT  Raphanus raphanistrum subsp. landra
EY910717       <-- GCGGAAACCGTCTCGAGTGCAACGGTCTCGGCGGCGCAACTCCGGCTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD968010       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975923       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549753       --> GCGGAAACCGTCTCGAGTGCAACGGTCTCGGTGGCGCAACTCCGGCTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569227       --> GCGGAAACCGTCTCGAGTGCAACGGTCTCGGCGGCGCAACCCCCGCTTCT  Raphanus raphanistrum subsp. landra
EX772564       --> GCGGAAACCGTCTCGAGTGCAACGGTCTCGGCGGCGCAACCCCCGCTTCT  Raphanus raphanistrum subsp. landra
EX886436       --> GCGGAAACCGTCTCTAGTTCAACGGTCTCGGCGGCGCAACCCCGGCTTCT  Raphanus sativus var. oleiformis
EY914730       --> GCGGAAACCGTCTCGAGTGCAACGGTCTCGGCGGCGCAACTCCGGCTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921661       --> GCGGAAACCGTCTCGAGTGCAACGGTCTCGGCGGCGCAACCCCCGCTTCT  Raphanus raphanistrum subsp. landra
FD938728       --> GCGGAAACCGTCTCGAGTGCAACGGTCTCGGCGGCGCAACCCCGGCTTCT  Raphanus sativus var. oleiformis
FD939163       --> GCGGAAACCGTCTCGAGTGCAACGGTCTCGGCGGCGCAACCCCGGCTTCT  Raphanus sativus var. oleiformis
FD972031       --> GCGGAAACCGTCTCGAGTGCAACGGTCTCGGCGGCGCAACTCCGGCTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD979955       --> GCGGAAACCGTCTCGAGTGCAACGGTCTCGGCGGCGCAACTCCGGCTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750516       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN21817        --> CTCGCTCAGTTCGACCTCCACCACGGCGGACACCAAGACTTATCCTCCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- CTCGCTCAGTTCGACCTCCACCACGGCGGACACCAAGACTTATCCTCCTA
EY910717       <-- CTCGCTCAGTTCGACCTCCACCACGGCGGACACCAAGACTTATCCTCCTA
FD968010       <-- ..................................................
FD975923       <-- ..................................................
EV549753       --> CTCGCTCAGTTCGACCTCCACCACGGCGGACACCAAGACTTATCCTCCTA
EV569227       --> CTCGCTCAGTTCGACCTCCACCACGGCGGACACCAAGACTTATCCCCCTA
EX772564       --> CTCGCTCAGTTCGACCTCCACCACGGCGGACACCAAGACTTATCCTCCTA
EX886436       --> CTCGCTCAGTTCGACCTCCACCACGGCGGACACCAAGACTTATCCTCCTA
EY914730       --> CTCGCTCAGTTCGACCTCCACCACGGCGGACACCAAGACTTATCCTCCTA
EY921661       --> CTCGCTCAGTTCGACCTCCACCACGGCGGACACCAAGACTTATCCTCCTA
FD938728       --> CTCGCTCAGTTCTACCTCCACCACGGCGGACACCAAGACTTATCCTCCTA
FD939163       --> CTCGCTCAGTTCGACCTCCACCACGGCGGACACCAAGACTTATCCTCCTA
FD972031       --> CTCGCTCAGTTCGACCTCCACCACGGTGGACACCAAGACTTATCCTCCTA
FD979955       --> CTCGCTCAGTTCGACCTCCACCACGGCGGACACCAAGACTTATCCTCCTA
EX750516       --> ..................................................

               451    -    501
UN21817        --> CGGTGTCTCTCTCGTCGACGGTTTCAACGTTCCGATGACTGTGACTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- CGGTGTCTCTCTCGTCGACGGTTTCAACATTCCGATGACTGTGACTCCTC  Raphanus raphanistrum subsp. landra
EY910717       <-- CGGTGTCTCTCTCGTCGACGGTTTCAACGTTCTGATGACTGTGACTCCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD968010       <-- .................ACGGTTTCAACGTTCCGATGACTGTGACTCCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975923       <-- .................ACGGTTTCAACGTTCCGATGACTGTGACTCCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549753       --> CGGCGTCTCCCTCGTCGACGGTTTCAACGTTCCGATGACTGTGACTCCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569227       --> CGGTGTCTCTCTCGTCGACGGTTTCAACATTCCGATGACTGTGACTCCTC  Raphanus raphanistrum subsp. landra
EX772564       --> CGGTGTCTCTCTCGTCGACGGTTTCAACATTCCGATGACTGTGACTCCTC  Raphanus raphanistrum subsp. landra
EX886436       --> CGGTGTCTCTCTCGTCGACGGTTTCAACGCTCCGATGACTGTGACTCCTC  Raphanus sativus var. oleiformis
EY914730       --> CGGTGTCTCTCTCGTCGACGGTTTCAACGTTCTGATGACTGTGACTCCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921661       --> CGGTGTCTCTCTCGTCGACGGTTTCAACATTCCGATGACTGTGACTCCTC  Raphanus raphanistrum subsp. landra
FD938728       --> CGGTGTCTCTCTCGTCGACGGTTTCAACGTTCCGATGACTGTGACTCCTC  Raphanus sativus var. oleiformis
FD939163       --> CGGTGTCTCTCTCGTCGACGGTTTCAACGTTCCGATGACTGTGACTCCTC  Raphanus sativus var. oleiformis
FD972031       --> CGGTGTCTCCCTCGTCGACGGTTTCAACGTTCCGATGACTGTGACTCCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD979955       --> CGGTGTCTCTCTCGTCGACGGTTTCAACGTTCCGATGACTGTGACTCCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750516       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN21817        --> ACGAAGGCCGTGGTGTTTGTCCCGTCGTTGGCTGCCGTGAAGACCTCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- ACGAAGGCCGTGGTGTTTGTCCCGTCGTTGGCTGCCGTGAAGACCTCTTG  Raphanus raphanistrum subsp. landra
EY910717       <-- ACGAAGGCCGTGGTGTTTGTCCCGTCGTCGGCTGCCGTGAAGACCTCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD968010       <-- ACGAAGGCCGTGGTGTTTGTCCCGTCGTCGGCTGCCGTGAAGACCTCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975923       <-- ACGAAGGCCGTGGTGTTTGTCCCGTCGTCGGCTGCCGTGAAGACCTCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549753       --> ACGAAGGCCGTGGTGTTTGTCCCGTCGTTGGCTGCCGTGAAGACCTCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569227       --> ACGAAGGCCGTGGTGTTTGTCTCGTCGTTGGCTGCCGTGAAGACCTCTTG  Raphanus raphanistrum subsp. landra
EX772564       --> ACGAAGGCCGTGGTGTTTGTCCCGTCGTTGGCTGCCGTGAAGACCTCTTG  Raphanus raphanistrum subsp. landra
EX886436       --> ACGAAGGCCGTGGTGTTTGTCCCGTCGTTGGCTGCCGTGAAGACCTCTTG  Raphanus sativus var. oleiformis
EY914730       --> ACGAAGGCCGTGGTGTTTGTCCCGTCGTCGGCTGCCGTGAAGACCTCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921661       --> A.................................................  Raphanus raphanistrum subsp. landra
FD938728       --> ACGAAGGCCGTGGTGTTTGTCCCGTCGTTGGCTGCCGTGAAGACCTCTTG  Raphanus sativus var. oleiformis
FD939163       --> ACGAAGGCCGTGGTGTTTGTCCCGTCGTTGGCTGCCGTGAAGACCTCTTG  Raphanus sativus var. oleiformis
FD972031       --> ACGAAGGCCGTGGTGTTTGTCCCGTCGTCGGCTGCCGTGAAGACCTCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD979955       --> ACGAAGGCCGTGGTGTTTGTCCCGTCGTCGGCTGCCGTGAAGACCTCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750516       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN21817        --> AAAACGTGTCCGGCTCATCTTCAGCTCCGGTCGGGACACGGTGGACACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- AAAACATGTCCGGCTCATCTTCAGCTCCGGTCGGGACACGGTGGACACGT  Raphanus raphanistrum subsp. landra
EY910717       <-- AAAACGTGCCCGGCTCATCTTCAGCTCCGGTCGGGACACGGTGGACACGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD968010       <-- AAAACGTGCCCGGCTCATCTTCAGCTCCGGTCGGGACACGGTGGACACGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975923       <-- AAAACGTGCCCGGCTCATTTTCAGCTCCGGTCGGGACACGGTGGACACGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549753       --> AAAACGTGTCCGGCTCATCTTCAGCTCCGGTCGGGACACGGTGGGCACGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569227       --> AAAACATGTCCGGCTCATCTTCAGCTCCGGTCGGGACACGGTGGACACGT  Raphanus raphanistrum subsp. landra
EX772564       --> AAAACATGTCCGGCTCATCTTCAGCTCCGGTCGGGACACGGTGGACACGT  Raphanus raphanistrum subsp. landra
EX886436       --> AAAACGTGTCCGGCTCATCTTCAGCTCCGGTCGGGACACGGTAGGCACGT  Raphanus sativus var. oleiformis
EY914730       --> AAAACGTGCCCGGCTCATCTTCAGCTCCGGTCGGGACACGGTGGACACGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921661       --> ..................................................  Raphanus raphanistrum subsp. landra
FD938728       --> AAAACGTGTCCGGCTCATCTTCAGCTCCGGTCGGGACACGGTAGGCACGT  Raphanus sativus var. oleiformis
FD939163       --> AAAACGTGTCCGGCTCATCTTCAGCTCCGGTCGGGACACGGTAGGCACGT  Raphanus sativus var. oleiformis
FD972031       --> AAAACGTGCCCGGCTCATCTTCAGCTCCGGTCGGGACACG-TGGACACGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD979955       --> AAAACGTGCCCGGCTCATCTTCAGCTCCGGTCGGGACACGGTGGACACGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750516       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN21817        --> GGTGGCATGTAAGAGTGGGTGTGAGGCGTTCCGTACGGACGAGCTGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- GGTGGCATGTAAGAGTGGGTGTGAGGCGTTCCGTACCGACGAGCTGTGTT
EY910717       <-- GGTGGCATGTAAGAGTGGGTGTGAGGCGTTCCGTACGGACGAGCTGTGTT
FD968010       <-- GGTGGCATGTAAGAGTGGGTGTGAGGCGTTCCGTACGGACGAGCTGTGTT
FD975923       <-- GGTGGCATGTAAGAGTGGGTGTGAGGCGTTCCGTACGGACGAGCTGTGTT
EV549753       --> GGTGGCATGTAAGAGTGGGTGTGAGGCGTTCCGTACAGACGAGCTGTGTT
EV569227       --> GGTGGCATGTAAGAGTGGGTGTGAGGCGTTCCGTACCGACGAGCTGTGTT
EX772564       --> GGTGGCATGTAAGAGTGGGTGTGAGGCGTTCCGTACCGACGAGCTGTGTT
EX886436       --> GGTGGCATGTAAGAGTGGGTGTGAG-CGTTCCGTACG-ACGAGttg....
EY914730       --> GGTGGCATGTAAGAGTGGGTGTGAGGCGTTCCGTACGGACGAGCTGTGTT
EY921661       --> ..................................................
FD938728       --> GGTGGCATGTAAGAGTGGGTGTGAGGCGTTCCGT................
FD939163       --> GGTGGCATGTAAGAGTGGGTGTGAGGCGTTCCGT................
FD972031       --> GGTGGCATGTAAGAGTGGGTGTGAG-CGTTCCGTACG-ACGAGCTG....
FD979955       --> GGTGGCATGTAAGAGTGGGTGTGAGGCGTTCCGTACGGACGAGCTGTGTT
EX750516       --> ..................................................

               651    -    701
UN21817        --> GTAGGAATCATTACAATAGTCCTCAGACGTGTCGTGCTTCGACCCACTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- GTAGGAATCATTACAATAGTCCTCAGACCTGTCGTGCTTCGACCCATTTT
EY910717       <-- GTAGGAATCATTACAATAGTCCTCAGACGTGTCGTGCTTCGACCCACTCT
FD968010       <-- GTAGGAATCATTACAATAGTCCTCAGACGTGTCGTGCTTCGACCCACTCT
FD975923       <-- GTAGGAATCATTACAATAGCTTTCAGGCGTGTCGTGCTTCGACCCACTCT
EV549753       --> GTAG-AATCATTACAATAGTCCTCAGACGTGTCGTGCTTCGACCCACTCT
EV569227       --> GTAGGAATCATTACAATAGTCCTCAGACCTGTCGTGCTTCGACCCATTCT
EX772564       --> GTAG-AATCATTACA-TAGTCCTCAGACCTGTCGTGCTTCGACCCATTCT
EX886436       --> ..................................................
EY914730       --> GTAG-AATCATTACAATAGTCCTCAGACGTGTCGTGCTTCGACCCACTCT
EY921661       --> ..................................................
FD938728       --> ..................................................
FD939163       --> ..................................................
FD972031       --> ..................................................
FD979955       --> GTAG-AATCATTACAATAGCTCTCAGGCGTGTCGTGCTTCGACCCACTCT
EX750516       --> ..................................................

               701    -    751
UN21817        --> CTGTTCTTTAAGCACGCGTGCCCTTCGACTATGACTTTTGCTCATGACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- CTGTTCTTTAAGCACGCGTGCCCTTCGACTATGACTTTTGCTCATGACAG
EY910717       <-- CTGTTCTTTAAGCACGCGTGCCCTTCGACTATGACTTTTGCTCATGACAG
FD968010       <-- CTGTTCTTTAAGCACGCGTGCCCTTCGACTATGACTTTTGCTCATGACAG
FD975923       <-- CTGTTCTTTAAGCACGCGTGCCCTTCGACTATGACTTTTGCTCATGACAG
EV549753       --> CTGTTCTTTAAGCACGCGTGCCCTTCGACTATGACTTTTGCTCATGACAG
EV569227       --> CTGTTCTTTAAGCACGCGTGCCCTTCGACTATGACTTTTGCTCATGACAG
EX772564       --> CTG...............................................
EX886436       --> ..................................................
EY914730       --> CTGTTCTTTAAGCACGCGTGCCCTTCGACTATGACTTTTGCTCATGACAG
EY921661       --> ..................................................
FD938728       --> ..................................................
FD939163       --> ..................................................
FD972031       --> ..................................................
FD979955       --> CTGTTCTTTAAGCACGCGTGCCCTTCGACTATGACTTTTGCTCATGACAG
EX750516       --> ..................................................

               751    -    801
UN21817        --> TCCTTCGCTTATGCATGACTGTTCTTCTCCTAGAGAGCTCAAAGTCATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- TCCTTCGCTTATGCATGACTGTTCTTCTCCTAGAGAGCTCAAAGTCATCT
EY910717       <-- TCCTTCGCTTATGCATGACTGTTCTTCTCCTAGAGAGCTCAAAGTCATCT
FD968010       <-- TCCTTCGCTTATGCATGACTGTTCTTCTCCTAGAGAGCTCAAAGTCATCT
FD975923       <-- TCCTTCGCTTATGCATGACTGTTCTTCTCCTAGAGAGCTCAAAGTCATCT
EV549753       --> TCCTTCGCTTATGCATGACTGTTCTTCTCCTAGAGAGCTCAA-GTCATCT
EV569227       --> TCCTTCGCTTATGCATGACTGTTCTTCTCCTAGAGAGCTCAAAGTCATCT
EX772564       --> ..................................................
EX886436       --> ..................................................
EY914730       --> TCCTTCGCTTATGCAT..................................
EY921661       --> ..................................................
FD938728       --> ..................................................
FD939163       --> ..................................................
FD972031       --> ..................................................
FD979955       --> TCCTTCGCTTATGCATGACTGTT-TTCTCCTAGAGAGCTCAA-GTCATCT
EX750516       --> ..................................................

               801    -    851
UN21817        --> TCTGTCACTAATGTGTTTCTCTTGTTCGGCTTGTTCTATATGGTTGTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- TCTGTCACTAATGTGTTTCTCTTGTTCGGCTTGTTCTATATGGTTGTACT
EY910717       <-- TCTGTCACTAATGTGTTTCTCTTGTTCGGCTTGTTCTATATGGTTGTACT
FD968010       <-- TCTGTCACTAATGTGTTTCTCTTGTTCGGCTTGTTCTATATGGTTGTACT
FD975923       <-- TCTGTCACTAATGTGTTTCTCTTGTTCGGCTTGTTCTATATGGTTGTACT
EV549753       --> TCTGTCACTAATGTGTTTCTTTTGTTCGGCTTGT-CTATATGGTTGTACT
EV569227       --> TCTGTCACTAATGTGTTTCTCTTGTTCGGCTTGTTCTATATGGT......
EX772564       --> ..................................................
EX886436       --> ..................................................
EY914730       --> ..................................................
EY921661       --> ..................................................
FD938728       --> ..................................................
FD939163       --> ..................................................
FD972031       --> ..................................................
FD979955       --> T-TGTCACT.........................................
EX750516       --> ..................................................

               851    -    901
UN21817        --> AGTGATATCGCACCGATCTCATATCTATCTT-------TCTGGTTTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- AGTGATATCGCACCGATCTCATATCTATCTTCTATCTTTCTGGTTTTGAT
EY910717       <-- AGTGATATCGCACCGATCTCATATCTATCTT-------TCTGGTTTTGAT
FD968010       <-- AGTGATATCGCACCGATCTCATATCTATCTT-------TCTGGTTTTGAT
FD975923       <-- AGTGATATCGCACCGATCTCATATCTATCTT-------TCTGGTTTTGAT
EV549753       --> ..................................................
EV569227       --> ..................................................
EX772564       --> ..................................................
EX886436       --> ..................................................
EY914730       --> ..................................................
EY921661       --> ..................................................
FD938728       --> ..................................................
FD939163       --> ..................................................
FD972031       --> ..................................................
FD979955       --> ..................................................
EX750516       --> ..................................................

               901    -    951
UN21817        --> TGGTTTAGTTTGCGATTTCCCGGTTCAGTTATGTAGTTTTTT-CAAAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- TGGTTTAGTTTGCGATTTCCCGGTTCAGTTATGTAGTTTTTTTCAAAAAT
EY910717       <-- TGGTTTAGTTTGCGATTTCCCGGTTCAGTTATGTAGTTTTTT-CAAAAAG
FD968010       <-- TGGTTTAGTTTGCGATTTCCCGGTTCAGTTATGTAGTTTTTT-CAAAAAG
FD975923       <-- TGGTTTAGTTTGCGATTTCCCGGTTCAGTTATGTAGTTTTTT-CAAAAA.
EV549753       --> ..................................................
EV569227       --> ..................................................
EX772564       --> ..................................................
EX886436       --> ..................................................
EY914730       --> ..................................................
EY921661       --> ..................................................
FD938728       --> ..................................................
FD939163       --> ..................................................
FD972031       --> ..................................................
FD979955       --> ..................................................
EX750516       --> ....................................TTTTTT-CAAAAAG

               951    -   1001
UN21817        --> TATTGTAGTCCAACTATGAAATTATGAATTATGTTTAAAATTGCCTCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- TATTGTAGTCCAACTATGAAATTATGACTTATGTTT..............
EY910717       <-- TATTGTAGTCCAACTATGAAATTATGAATTATGTTTAAAATTGCCTCTGT
FD968010       <-- TATTGTAGTCCAACTATGAAATTACGAATTATGTT...............
FD975923       <-- ..................................................
EV549753       --> ..................................................
EV569227       --> ..................................................
EX772564       --> ..................................................
EX886436       --> ..................................................
EY914730       --> ..................................................
EY921661       --> ..................................................
FD938728       --> ..................................................
FD939163       --> ..................................................
FD972031       --> ..................................................
FD979955       --> ..................................................
EX750516       --> TATTGTAGTCCAACTATGAAATTATGAATTATGTTTAAAATTGCCTCTGT

               1001   -   1051
UN21817        --> TTCGTTATCTGTTT-GGAATCGAGTATTGATATTCACTTTTTTTTACTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- ..................................................
EY910717       <-- TTCGTTATCTGTTT-GGAATCGAGTATTGATATTCACTTTTTTTTACTCG
FD968010       <-- ..................................................
FD975923       <-- ..................................................
EV549753       --> ..................................................
EV569227       --> ..................................................
EX772564       --> ..................................................
EX886436       --> ..................................................
EY914730       --> ..................................................
EY921661       --> ..................................................
FD938728       --> ..................................................
FD939163       --> ..................................................
FD972031       --> ..................................................
FD979955       --> ..................................................
EX750516       --> TTCGTTATCTGTTTTGGAATCGAGTATTGATATTCACTTTTTTT-ACTCG

               1051   -   1101
UN21817        --> TTATTATAAAAGGACATTTGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~
EX776483       <-- ........................
EY910717       <-- ........................
FD968010       <-- ........................
FD975923       <-- ........................
EV549753       --> ........................
EV569227       --> ........................
EX772564       --> ........................
EX886436       --> ........................
EY914730       --> ........................
EY921661       --> ........................
FD938728       --> ........................
FD939163       --> ........................
FD972031       --> ........................
FD979955       --> ........................
EX750516       --> TTATTATAAAAGGACATTTGTGTT