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Alignment for radish unigene UN21820

               1      -     51
UN21820        --> CAGTCCTAATCCAACATTTCATGCATATACTATTAGGGTTAACATAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- ..................................................
EV551905       <-- ..................................................
EX772376       <-- ..................................................
FD963565       <-- ..................................................
EX896530       <-- ..................................................
EX772900       <-- ..................................................
EY932882       <-- ..................................................
FD542132       <-- ..................................................
EX755440       <-- ..................................................
EX776345       --> CAGTCCTAATCCAACATTTCATGCATATACTATTAGGGTTAACATAGAGT
EX776752       --> CAGTCCTAATCCAACATTTCATGCATATACTATTAGGGTTAACATAGAGT
EX759523       --> ..................................................
EV546922       --> ..................................................
EW729083       --> ..................................................
EX900450       --> ..................................................
FD959839       --> ..................................................

               51     -    101
UN21820        --> TAGGGTTGAAGTAGGGTTGAGTTTATATTTTATAGGGTTGGCTGAGTTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- ..................................................
EV551905       <-- ..................................................
EX772376       <-- ..................................................
FD963565       <-- ..................................................
EX896530       <-- ..................................................
EX772900       <-- ..................................................
EY932882       <-- ..................................................
FD542132       <-- ..................................................
EX755440       <-- ..................................................
EX776345       --> TAGGGTTGAAGTAGGGTTGAGTTTATATTTTATAGGGTTGGCTGAGTTCG
EX776752       --> TAGGGTTGAAGTAGGGTTGAGTTTATATTTTATAGGGTTGGCTGAGTTCG
EX759523       --> ..................................................
EV546922       --> ..................................................
EW729083       --> ..................................................
EX900450       --> ..................................................
FD959839       --> ..................................................

               101    -    151
UN21820        --> AAAACCTATATGGGATCATGGTTAGGGCTACATGTATATTTATATTAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- ..................................................
EV551905       <-- ..................................................
EX772376       <-- ..................................................
FD963565       <-- ..................................................
EX896530       <-- ..................................................
EX772900       <-- ..................................................
EY932882       <-- ..................................................
FD542132       <-- ..................................................
EX755440       <-- ..................................................
EX776345       --> AAAACCTATATGGGATCATGGTTAGGGCTACATGTATATTTATATTAGAG
EX776752       --> AAAACCTATATGGGATCATGGTTAGGGCTACATGTATATTTATATTAGAG
EX759523       --> ..................................................
EV546922       --> ..................................................
EW729083       --> ..................................................
EX900450       --> ..................................................
FD959839       --> ..................................................

               151    -    201
UN21820        --> ATGTTTCCTAAACTATATAGATACAAATATATGCGAATAGATTATACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- ..................................................
EV551905       <-- ..................................................
EX772376       <-- ..................................................
FD963565       <-- ..................................................
EX896530       <-- ..................................................
EX772900       <-- ..................................................
EY932882       <-- ..................................................
FD542132       <-- ..................................................
EX755440       <-- ..................................................
EX776345       --> ATGTTTCCTAAACTATATAGATACAAATATATGCGAATAGATTATACAAT
EX776752       --> ATGTTTCCTAAACTATATAGATACAAATATATGCGAATAGATTATACAAT
EX759523       --> ......CCTAAACTATATAGATAGAAATATATGCGAATAGAATATACAAT
EV546922       --> .......CTAAACTATATAGATACAAATATATGCGAATAGATTATACAAT
EW729083       --> ........TAAACTATATAGATACAAATATATCCGAATAGATTATACAAT
EX900450       --> ..................AGATACAAATATATGCGAATAGATTATACAAT
FD959839       --> ......................gcctagccagccgggttcgggtcttaca

               201    -    251
UN21820        --> AAAT-ATCCAATATTAACAATGATATTTACGATCTCCTAGATTCTTCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- ..................................................
EV551905       <-- ..................................................
EX772376       <-- ..................................................
FD963565       <-- ..................................................
EX896530       <-- ..................................................
EX772900       <-- ..................................................
EY932882       <-- ..................................................
FD542132       <-- ..................................................
EX755440       <-- ..................................................
EX776345       --> AAATTATTCAATATTAACAATGATATTTACGATCTCCTAGATCCTTCTAT
EX776752       --> AAATTATTCAATATTAACAATGATATTTACGATCTCCTAGATCCTTCTAT
EX759523       --> GAAT-ATCCAATATTAACAATGATATTTACGATCTCCTAGATTCTTCTAT
EV546922       --> AAAT-ATCCAATATTAACAATGATATTTACGATCTCCTAGATTCTTCTAT
EW729083       --> AAAT-ATCCAATATTAACAATGATATTTACGATCTCCTAGATTCTTCTAT
EX900450       --> AAAT-ATCCAATATTAACAACGATGTTTACGACCTCCTAGATTCTTCTAT
FD959839       --> gAAT-ATCCAATATTAACAATGATATTTACGATCTCCTAGATTCTTCTAT

               251    -    301
UN21820        --> AGAACATAGGATCATATGCGATCAAAGCCGACGTCCAAATCGTCTTTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- ..................................................
EV551905       <-- ..................................................
EX772376       <-- ..................................................
FD963565       <-- ..................................................
EX896530       <-- ..................................................
EX772900       <-- ..................................................
EY932882       <-- ..................................................
FD542132       <-- ..................................................
EX755440       <-- ..................................................
EX776345       --> AGAACATAGGATCATATGCGATCAAAGCCGACGTCCAAATCGTCTTTCCC
EX776752       --> AGAACATAGGATCATATGCGATCAAAGCCGACGTCCAAATCGTCTTTCCC
EX759523       --> AGAACATAGGATCATATGCCATCAAAGCCGACGTCCAAATCGTCTTTCCC
EV546922       --> AGAACATAGGATCATATGCGATCAAAGCCGACGTCCAAATCGTCCTTCCC
EW729083       --> AGAACATAGGATCATATGCGATCAAAGCCGACGTCCAAATCGTCTTTCCC
EX900450       --> ATAACATAGGATCATATGCGATCAAAGCCTACGTCCAAATCGTCTTTCCC
FD959839       --> AGAACATAGGATCATATGCCATCAAAGCCGACGTCCAAATCGTCTTTCCC

               301    -    351
UN21820        --> TGCACTGGTACGAAACCAGGGCCTCTAGCAACTTGTCTTCATTAAAATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- ..................................................
EV551905       <-- ..................................................
EX772376       <-- ..................................................
FD963565       <-- ..................................................
EX896530       <-- ..................................................
EX772900       <-- ..................................................
EY932882       <-- ..................................................
FD542132       <-- ..................................................
EX755440       <-- ..................................................
EX776345       --> TGCACTGGTACGAAACCAGGGCCTCTAGCAACTTGTCTTCATTAAAATCA
EX776752       --> TGCACTGGTACGAAACCAGGGCCTCTAGCAACTTGTCTTCATTAAAATCA
EX759523       --> TGCACTGGTACGAAACCAGGGCCTCTAGCAACTTGTCTTCTTTAAAATCA
EV546922       --> TGCACTGGTACGAAACCAGGGCCTCTAGCAACTTGTCTTCATTAAAATCA
EW729083       --> TGCACTGGTGCGAAACCAGGGCCTCTAGCAACTTGTCTTCATTAAAATCA
EX900450       --> TGCACTGGTACGAAACCAGGGCCTCTAGCAACTTGTCTTCATTAAAATCA
FD959839       --> TGCACTGGTACGAAACCAGGGCCTCTAGCAACTTGTCTTCATTAAAATCA

               351    -    401
UN21820        --> GGCCAAAGGACCGGTGAGAAGAAGAGCTCCGTATAAGCGAGCTGCCACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- ..................................................
EV551905       <-- ..................................................
EX772376       <-- ..................................................
FD963565       <-- ..................................................
EX896530       <-- ..................................................
EX772900       <-- ..................................................
EY932882       <-- ..................................................
FD542132       <-- ..................................................
EX755440       <-- ..................................................
EX776345       --> GGCCAAAGGACCGGTGAGAAGAAGAGCTCCGTATAAGCGAGCTGCCACAA
EX776752       --> GGCCAAAGGACCGGTGAGAAGAAGAGCTCCGTATAAGCGAGCTGCCACAA
EX759523       --> GGCCAAAGTACCGGTGAGAAGAAGAGCTCCGTATAAGCGAGCTGCCACAA
EV546922       --> GGCCAAAGGACCGGTGAGAAGAAGAGCTCCGTATAAGCGAGCTGCCACAA
EW729083       --> GGCCAAAGGACCGGTGAGAAGAAGAGCTCCGTATAAGCGAGCTGCCACAA
EX900450       --> GGCCAAAGGACCGGGGAGAAGAAGAGCTCCGTATAAGCGAGCTGCCACAA
FD959839       --> GGCCAAAGGACCGGTGAGAAGAAGAGCTCCGTATAAGCGAGCTGCCACAA

               401    -    451
UN21820        --> GAAGAAGTTACTAATCCTCTGTTCTCCACTTGTCCTAATCAATAGATCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- .....................................ATCAATAGATCGG
EV551905       <-- .......................................CAATAGATCGG
EX772376       <-- .....................................tatcATAGATCGG
FD963565       <-- ...........................................AGATCGG
EX896530       <-- ..................................................
EX772900       <-- ..................................................
EY932882       <-- ..................................................
FD542132       <-- ..................................................
EX755440       <-- ..................................................
EX776345       --> GAAGAAGTTACTAATCCTCTGTTCTCCACTTGTCCTAATCAATAGATCGG
EX776752       --> GAAGAAGTTACTAATCCTCTGTTCTCCACTTGTCCTAATCAATAGATCGG
EX759523       --> GAAGAAGTTACTAATCCTCTGTTCTCCACTTGTCCTAATCAATAGGTCGG
EV546922       --> GAAGAAGTTACTAATCCTCTGTTCTCCACTTGTCCTAATCAATAGATCGG
EW729083       --> GAAGAAGTTACTAATCCTCTGTTCTCCACTTGTCCTAATCAATAGATCGG
EX900450       --> GAAGAAGTTACTAATCCTCTGTTCTCCACTTGTCCTAATCAATAGGTCGG
FD959839       --> GAAGAAGTTACTAATCCTCTGTTCTCCACTTGTCCTAATCAATAGATCGG

               451    -    501
UN21820        --> GACTTGGGAACTCAGCACACTTTGTCACAAGCTCTCCCTCGAAAAGCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- GACTTGGGAACTCAGCACACTT-GTCACAAGCTCTCCCTCGAAAAGCG-C
EV551905       <-- GAATTGGGAACTCAGCACACTT-GTCACAAGCTCTCCCTCGAAAAGCGTC
EX772376       <-- -AC-TGGG-ACTCAGCACACTT-GTCACA-GCTC-CCCTCGAAA-GCGTC
FD963565       <-- GACTTGGGA-CTCAGCACACTT-GTCACAAGCTCTCCCTCGAAAAGCGTC
EX896530       <-- ............CAGCACACTT-GTCACAAGCTCTCCCTCGAAAAGGGTC
EX772900       <-- ...................CTTTGTCACAAGCTCTCCCTCGAAAAGCGTC
EY932882       <-- ..................................................
FD542132       <-- ..................................................
EX755440       <-- ..................................................
EX776345       --> GACTTGGGAACTCAGCACACTTTGTCACAAGCTCTCCCTCGAAAAGCGTC
EX776752       --> GACTTGGGAACTCAGCACACTTTGTCACAAGCTCTCCCTCGAAAAGCGTC
EX759523       --> GACTTGGGAACTCAGCACACTTTGTCACAAGCTCTCCCTCGAAAAGCGTC
EV546922       --> GAATTGGGAACTCAGCACACTTTGTCACAAGCTCTCCCTCGAAAAGCGTC
EW729083       --> GACTTGGGAACTCAGCACACTTTGTCACAAGCTCTCCCTCGAAAAGCGCC
EX900450       --> GACTTGGGAA........................................
FD959839       --> GACTTGGGAACTCAGCACACTTTGTCACAAGCTCTCCCTCGAAAAGCGTC

               501    -    551
UN21820        --> TCGTCCACGTCTTCCTCACTGATCAAACCTTGTTGTGATTTCTTCATAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- TCGTCCACGTCTTCCTCACTGATCAAACCTTGTTGTGATTTCTTCATAAG
EV551905       <-- TCGTCCACGTCTTCCTCACTGATCAAACTTTGTTGTGATTTCTTCATAAG
EX772376       <-- TCGTC-ACGTCTTCCTCACTGATCAAAC-TTGTTGTGATTTCT-CATAAG
FD963565       <-- TCGTCCACGTCT-CCTCACTGATCAA-GCTTGTTGTGATTTCTTCATAAG
EX896530       <-- TCGTCCACGTCTTCCTCACTGATCAA-CCTTGTTGTGATTTCTTCATTAG
EX772900       <-- TCGTCCACGTCTTCCTCACTGATCAAAC-TTGTTGTGATT-CTTCATAAG
EY932882       <-- ..................................................
FD542132       <-- ..................................................
EX755440       <-- ..................................................
EX776345       --> TCGTCCACGTCTTCCTCACTGATCAAACCTTGTTGTGATTTCTTCATAAG
EX776752       --> TCGTCCACGTCTTCCTCACTGATCAAACCTTGTTGTGATTTCTTCATAAG
EX759523       --> TCGTCCACGTCTTCCTCACTGATCAAACCTTGTTGTGATTTCTTCATTAG
EV546922       --> TCGTCCACGTCTTCCTCACTGATCAAACCTTGTTGTGATTTCTTCATAAG
EW729083       --> TCGTCCACGTCTTCCTCACTGATCAAACCTTGTTGTGATTTCTTCATAAG
EX900450       --> ..................................................
FD959839       --> TCGTCCACGTCTTCCTCACTGATCAAGCCTTGTTGTGATTTCTTCATAAG

               551    -    601
UN21820        --> ATTCTTGCAGGCTTGCAAGATGTCGAATCTCCCGCTGTAATCTATGGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- ATTCTTGCAGGCTTGCAAGATGTCGAATCTCCCGCTGTAATCTATGGCCA  Raphanus sativus cv Early Scarlet Globe
EV551905       <-- ATTCTTGCAGGCTTGCAAGATGTCGAATCTCCCGCTGTAATCTATGGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX772376       <-- AT-C-TGCAGGCTTGCAAGATGTCGAATCTCCCGCTGTAATCTATGGCCA  Raphanus raphanistrum subsp. landra
FD963565       <-- ACTCTTGCAGGCGTGCAAGATGTCGAATCTCCCGCTGTAATCTATGGCCA  Raphanus raphanistrum subsp. maritimus
EX896530       <-- ATTCTTGCAGGCGTTCAAGATGTCGAATCTCCCGCTGTAATCTATGGCCA  Raphanus sativus cv Early Scarlet Globe
EX772900       <-- AT-CTTGCAGGCTTGCAAGATGTCGAATCTCCCGCTGTAATCTATGGCCA  Raphanus raphanistrum subsp. landra
EY932882       <-- ..................................................  Raphanus sativus var. oleiformis
FD542132       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755440       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776345       --> ATTCTTGCAGGCTTGCAAGATGTCGAATCTCCCGCTGTAATCTATGGCCA  Raphanus raphanistrum subsp. landra
EX776752       --> ATTCTTGCAGGCTTGCAAGATGTCGAATCTCCCGCTGTAATCTATGGCCA  Raphanus raphanistrum subsp. landra
EX759523       --> ATTCTTGCAGGCGTTCAAGATGTCCAATCTCCCGCTGTAATCTATGG...  Raphanus raphanistrum subsp. raphanistrum (MS)
EV546922       --> ATTCTTGCAGGCTTGCAAGATGTCGAATCTCCCGCTGTAATCTATGGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729083       --> ATTCTTGCAGGCTTGCAAGATGTCGAATCTCCCGCTGTAATCTATGGCCA  Raphanus sativus cv Early Scarlet Globe
EX900450       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD959839       --> ACTCTTGCAGGCGTGCAAGATGTCGAATCTCCCGCTGTAATCTATGGCCA  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN21820        --> AGATGAGATGCTTCTTCTTGTAGCTCTTCGTAGATTCCTTTAGCTCTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- AGATGAGATGCTTCTTCTTGTAGCTCTTCGTAGATTCCTTTAGCTCTTTA  Raphanus sativus cv Early Scarlet Globe
EV551905       <-- AGATGAGATGCTTCTTCTTGTAGCTCTTCGTAGATTCCTTTAGCTCTTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX772376       <-- AGATGAGATGCTTCTTCTTGTAGCTCTTCGTAGATTCCTTTAGCTCTTTA  Raphanus raphanistrum subsp. landra
FD963565       <-- AGATGAGATGTTTCTTCTTGTAGCTCTTCGTAGATTCCTTTAGCTCTTTG  Raphanus raphanistrum subsp. maritimus
EX896530       <-- AGATGAGATGCTTCTTCTTGTAGCTCTTCGTAGCTTCCTTTAGCTCTTTG  Raphanus sativus cv Early Scarlet Globe
EX772900       <-- AGATGAGATGCTTCTTCTTGTAGCTCTTCGTAGATTCCTTTAGCTCTTTA  Raphanus raphanistrum subsp. landra
EY932882       <-- .........................................AGCTCTTTG  Raphanus sativus var. oleiformis
FD542132       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755440       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776345       --> AGATGAGATGCTTCTTCTTGTAGCTCTTCGTAGATTCCTTTAGCTCTTTA  Raphanus raphanistrum subsp. landra
EX776752       --> AGATGAGATGCTTCTTCTTGTAGCTCTTCGTAGATTCCTTTAGCTCTTTA  Raphanus raphanistrum subsp. landra
EX759523       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV546922       --> AGATGAGATGCTTCTTCTTGTAGCTCTTCGTAGATTCCTTTAGCTCTTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729083       --> AGATGAGATGCTTCTTCTTGTAGCTCTTCGTAGATTCCTTTAGCTCTTTA  Raphanus sativus cv Early Scarlet Globe
EX900450       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD959839       --> AGATGAGATGTTTCTTCTTGTAGCTCTTCGTAGATTCCTTTAGCTCTTTG  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN21820        --> ATTGTCTTGAGGAGAGATTCCGGGATCTTTTCAAGATTCCCAATAACAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- ATTGTCTTGAGGAGAGATTCCGGGATCTTTTCAAGATTCCCAATAACAGA
EV551905       <-- ATTGTCTTGAGGAGAGATTCCGGGATCTTTTCAAGATTCCCAATAACAGA
EX772376       <-- ATTGTCTTGAGGAGAGATTCCGGGATCTTTTCAAGATTCCCAATAACAGA
FD963565       <-- ATTGTCTTGAGGAGAGATTCCGGGATCTTTCCAAGATTCCCAATAACAGA
EX896530       <-- ATTGTCTTGAGGAGAGATTCCGGGATCTTTTCAAGATTCCCAATAACAGA
EX772900       <-- ATTGTCTTGAGGAGAGATTCCGGGATCTTTTCAAGATTCCCAATAACAGA
EY932882       <-- ATTGTCTTGAGGAGAGATTCCGGGATCTTTTCAAGATTCCCAATAACAGA
FD542132       <-- ........................ATCTTTTCAAGATTCCCAATAACAGA
EX755440       <-- ..................................................
EX776345       --> ATTGTCTTGAGGAGAGATTCCGGGATCTTTTCAAGATTCCCAATAACAGA
EX776752       --> ATTGTCTTGAGGAGAGATTCCGGGATCTTTTCAAGATTCCCAATAACAGA
EX759523       --> ..................................................
EV546922       --> ATTGTCTTGAGGAGAGATTCCGGGATCTTTTCAAGATTCCCAATAACAGA
EW729083       --> ATTGTCTTGAGGAGAGATTCCGGGATCTTTTCAAGATTCCCAATAACAGA
EX900450       --> ..................................................
FD959839       --> ATTGTCTTGAGGAGAGATTCCGGGATCTTTCCAAGATTCCCAATAACAGA

               701    -    751
UN21820        --> AACTCGGATCTCCTCTCTTTTGAAATATTGTAACTTTGAGCTGAGGTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- AACTCGGATCTCCTCTCTTTTGAAATATTGTAACTTTGAGCTGAGGTATC  Raphanus sativus cv Early Scarlet Globe
EV551905       <-- AACTCGGATCTCCTCTCTTTTGAAATATTGTAACTTTGAGCTGAGGTATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX772376       <-- AACTCGGATCTCCTCTCTTT-GAAATATTGTAACTTTGAGCTGAGGTATC  Raphanus raphanistrum subsp. landra
FD963565       <-- AACTCGGATTTCCTCTCTTTTGAAATATTGTAACTTTGAGTTGAGGTATC  Raphanus raphanistrum subsp. maritimus
EX896530       <-- AACTCGGATCTCCTCTCTTTTGAAATATTGTAACTTTGAGCTGAGGTATC  Raphanus sativus cv Early Scarlet Globe
EX772900       <-- AACTCGGATCTCCTCTCTTTTGAAATATTGTAACTTTGAGCTGAGGTATC  Raphanus raphanistrum subsp. landra
EY932882       <-- AACTCGGATTTCTTCTCTTTTGAAATATTGTAACTTTGAGTTGAGGTATC  Raphanus sativus var. oleiformis
FD542132       <-- AACTCGGATCTCCTCTCTTTTGAAATATTGTAACTTTGAGTTGAGGTATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755440       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776345       --> AACTCGGATCTCCTCTCTTTTGAAATATTGTAACTTTGAGCTGAGGTATC  Raphanus raphanistrum subsp. landra
EX776752       --> AACTCGGATCTCCTCTCTTTTGAAATATTGTAACTTTGAGCTGAGGTATC  Raphanus raphanistrum subsp. landra
EX759523       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV546922       --> AACTCGGATCTCCTCTCTTTTGAAATATTGTAACTTTGAGCTGAGGTATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729083       --> AACTCGGATCTCCTCTCTTTTGAAATATTGTAACTTTGAGCTGAGGTATC  Raphanus sativus cv Early Scarlet Globe
EX900450       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD959839       --> AACTCGGATTTCCTCTCTTTTGAAATATTGTAACTTTGAGTTGAGGTATC  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN21820        --> TTTCGAACAAAAACATCAAGCAATTAACTTCGACCTTTTGTCTTCCCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- TTTCGAACAAAAACATCAAGCAATTAACTTCGACCTTTTGTCTTCCCCAA
EV551905       <-- TTTCGAACAAAAACATCAAGCAATTAACTTCGACCTTTTGTCTTCCCCAA
EX772376       <-- TTTCGAACAAAAACATCAAGCAATTAACTTCGACCTTTTGTCTTCCCCAA
FD963565       <-- TTTCGAACAAAAACATCAAGCAATTAACTTCGACCTTTTGTCTTCCCCAA
EX896530       <-- TTTCGAACAAAAACATCAAGCAATTAACTTCGACCTTTTGTCTTCCCCAA
EX772900       <-- TTTCGAACAAAAACATCAAGCAATTAACTTCGACCTTTTGTCTTCCCCAA
EY932882       <-- TTTCGAACAAAAACATCAAGCAATTAACTTCGACCTTTTGTCTTCCCCAA
FD542132       <-- TTTCGAACAAAAACATCAAGCAATTAACTTCGACCTTTTGTCTTCCCCAA
EX755440       <-- ..................................................
EX776345       --> TT................................................
EX776752       --> TTTCGAA...........................................
EX759523       --> ..................................................
EV546922       --> TTTCGAACAAAAACATCAAGCAATTAACTTCGACCTTTTGTCTTCCCCAA
EW729083       --> TTTCGAACAAAAACATCAAGCAATTAACTTCGACCTTTTGTCTTCCCCAA
EX900450       --> ..................................................
FD959839       --> TTTCGAACAAAAA.....................................

               801    -    851
UN21820        --> TTCTCAGTGGAGAAAGCAAAAGCTGACACTGTTTCTATCCCTAGTTTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- TTCTCAGTGGAGAAAGCAAAAGCTGACACTGTTTCTATCCCTAGTTTGAA
EV551905       <-- TTCTCAGTGGAGAAAGCAAAAGCTGACACTGTTTCTATCCCTAGTTTGAA
EX772376       <-- TTCTCAGTGGAGAAAGCAAAAGCTGACACTGTTTCTATCCCTAGTTTGAA
FD963565       <-- TTCTCAGTGGAGAAAGCAAAAGCTGACACTGTTTCTATCCCTAGTTTGAA
EX896530       <-- TTCTCAGTGGAGAAAGCAAAAGCTGACACTGTTTCTATCCCTAGTTTGAA
EX772900       <-- TTCTCAGTGGAGAAAGCAAAAGCTGACACTGTTTCTATCCCTAGTTTGAA
EY932882       <-- TTCTCAGTGGAGAAAGCAAAAGCTGACACTGTTTCTATCCCTAGTTTGAA
FD542132       <-- TTCTCAGTGGAGAAAGCAAAAGCTGACACTGTTTCTATCCCTAGTTTGAA
EX755440       <-- ..................................................
EX776345       --> ..................................................
EX776752       --> ..................................................
EX759523       --> ..................................................
EV546922       --> TTCTCAGTGGAGAAAGCAAAAGCTGACACTGTTTCTATCCCTAGTTTGAA
EW729083       --> TTCTCAGTGGAGAAAGCAAAAGCTGACACTGTTTCTATCCCTAGTTTGAA
EX900450       --> ..................................................
FD959839       --> ..................................................

               851    -    901
UN21820        --> GCAGAGATCAGCGAACTCTAAAAGCCGTTTGGCTCCTGCCTCGTGGCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- GCAGAGATCAGCGAACTCTAAAAGCCGTTTGGCTCCTGCCTCGTGGCCTT
EV551905       <-- GCAGAGATCAGCGAACTCTAAAAGCCGTTTGGCTCCTGCCTCGTGGCCTT
EX772376       <-- GCAGAGATCAGCGAACTCTAAAAGCCGTTTGGCTCCTGCCTCGTGGCCTT
FD963565       <-- GCAGAGATCAGCGAACTCTAAAAGCCGTTTGGCTCCTGCCTCGTGGCCTT
EX896530       <-- GCAGAGATCAGCGAACTCTAAAAGCCGTTTGGCTCCTGCCTCGTGGCCTT
EX772900       <-- GCAGAGATCAGCGAACTCTAAAAGCCGTTTGGCTCCTGCCTCGTGGCCTT
EY932882       <-- GCAGAGATCAGCGAACTCTAAAAGCCGTTTGGCTCCTGCCTCGTGGCCTT
FD542132       <-- GCAGAGATCAGCGAACTCTAAAAGCCGTTTGGCTCCTGCCTCGTGGCCTT
EX755440       <-- ..................................................
EX776345       --> ..................................................
EX776752       --> ..................................................
EX759523       --> ..................................................
EV546922       --> GCAGAGATCAGCGAACTCTAAAAGCCGTTTGGCTCCTGCCTCGTGGCCTT
EW729083       --> GCAGAGATCAGCGAACTCTAAAAGCCGTTTGGCTCCTGCCTCGTGGCCTT
EX900450       --> ..................................................
FD959839       --> ..................................................

               901    -    951
UN21820        --> GTAACGTCAGCAATCCGCCCCGTTCGGCCCATCTCCTGTTTCCGTCCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- GTAACGTCAGCAATCCGCCCCGTTCGGCCCATCTCCTGTTTCCGTCCATT
EV551905       <-- GTAACGTCAGCAATCCGCCCCGTTCGGCCCATCTCCTGTTTCCGTCCATT
EX772376       <-- GTAACGTCAGCAATCCGCCCCGTTCGGCCCATCTCCTGTTTCCGTCCATT
FD963565       <-- GTAACGTCAGCAATCCGCCCCGTTCGGCCCATCTCCTGTTTCCGTCCATT
EX896530       <-- GTAACGTCAGCAATCCGCCCCGTTCGGCCCATCTCCTGTTTCCGTCCATT
EX772900       <-- GTAACGTCAGCAATCCGCCCCGTTCGGCCCATCTCCTGTTTCCGTCCATT
EY932882       <-- GTAACGTCAGCAATCCGCCCCGTTCGGCCCATCTCCTGTTGCCGTCCATT
FD542132       <-- GTAACGTCAGCAATCCGCCCCGTTCGGCCCATCTCCTGTTTCCGTCCATT
EX755440       <-- ..................................................
EX776345       --> ..................................................
EX776752       --> ..................................................
EX759523       --> ..................................................
EV546922       --> GTAACGTCAGCAATCCGCCCCGTTCGGCCCATCTCCTGTTTCCGTCCATT
EW729083       --> GTAACGTCAGCAATCCGCCCCGTTCGGCCCATCTCCTGTTTCCGTCCATT
EX900450       --> ..................................................
FD959839       --> ..................................................

               951    -   1001
UN21820        --> ATCACTGCCACGTGTCTCGGCATCAGCTCTCTCACAAGCCCTGAAGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- ATCACTGCCACGTGTCTCGGCATCAGCTCTCTCACAAGCCCTGAAGTTGT
EV551905       <-- ATCACTGCCACGTGTCTCGGCATCAGCTCTCTCACAAGCCCTGAAGTTGT
EX772376       <-- ATCACTGCCACGTGTCTCGGCATCAGCTCTCTCACAAGCCCTGAAGTTGT
FD963565       <-- ATCACTGCCACGTGTCTCGGCATCAGCTCTCTCACAAGCCCTGAAGTTGT
EX896530       <-- ATCACTGCCACGTGTCTCGGCATCAGCTCTCTCACAAGCCCTGAAGTTGT
EX772900       <-- ATCACTGCCACGTGTCTCGGCATCAGCTCTCTCACAAGCCCTGAAGTTGT
EY932882       <-- ATCACTGCCACGTGTCTCGGCATCAGCTCTCTCACAAGCCCTGAACTTGT
FD542132       <-- ATCACTGCCACGTGTCTCGGCATCAGCTCTCTCACAAGCCCTGAAGTTGT
EX755440       <-- ..................................................
EX776345       --> ..................................................
EX776752       --> ..................................................
EX759523       --> ..................................................
EV546922       --> ATCACTGCCACGTG....................................
EW729083       --> ATCACTGCCACGTGTCTCGGCATCAGCTCTCTCACAAGCCCTGAAGTTGT
EX900450       --> ..................................................
FD959839       --> ..................................................

               1001   -   1051
UN21820        --> CCCCTCCTCTCCCACGTTCACATAAGTTCCCTCGTCAC---GTTTCTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- CCCCTCCTCTCCCACGTTCACATAAGTTCCCTCGTCAC---GTTTCTCGT
EV551905       <-- CCCCTCCTCTCCCACGTTCACATAAGTTCCCTCGTCAC---GTTTCTCGT
EX772376       <-- CCCCTCCTCTCCCACGTTCACATAAGTTCCCTCGTCAC---GTTTCTCGT
FD963565       <-- CCCCTCCTCTCCCAGGTTCACATAAGTTCCCTCGTCAC---GTTTCTCGT
EX896530       <-- CCCCTCCTCTCCCACGTTCACATAAGTTCCCTCGTCAC---GTTTCTCGT
EX772900       <-- CCCCTCCTCTCCCACGTTCACATAAGTTCCCTCGTCAC---GTTTCTCGT
EY932882       <-- CTCCTCCTCTCCCACGTTCGCATAAGTTCCCTCGTCACTACGTTTCTCGT
FD542132       <-- CCCCTCCTCTCCCACGTTCACATAAGTTCCCTCGTAAC---GTTTCTCGT
EX755440       <-- .........................................GTTTCTCGT
EX776345       --> ..................................................
EX776752       --> ..................................................
EX759523       --> ..................................................
EV546922       --> ..................................................
EW729083       --> CCCCTCCTCTCCCACGTTCACATAAGTTCCCTCGTCAC---GTTTCTCGT
EX900450       --> ..................................................
FD959839       --> ..................................................

               1051   -   1101
UN21820        --> TCCTCTCTTCCTCATCATCGTGCCGAGAAGTTATGAGCTTAATGAATCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- TCCTCTCTTCCTCATCATCGTGCCGAGAAGTTGCGAGCTTAATGAATCCG
EV551905       <-- TCCTCTCTTCCTCATCATCGTGCCGAGAAGTTGCGAGCTTAATGAATCCG
EX772376       <-- TCCTCTCTTCCTCATCATCGTGCCGAGAAGTTATGAGCTTAATGAATCCG
FD963565       <-- TCCTCTCTTCCTCATCATCGTGCCGAGAAGTTGCGAGCTTAATGAATCCG
EX896530       <-- TCCTCTCTTCCTCATCATCGTGCCGAGAAGTTATGAGCTTAATGAATCCG
EX772900       <-- TCCTCTCTTCCTCATCATCGTGCCGAGAAGTTATGAGCTTAATGAATCCG
EY932882       <-- TCCTCTCTTCCTCATCGTCGTACCGAGAAGTTATGAGCTTAATGAATCCG
FD542132       <-- TCCTCTCTTCCTCATCATCGTGCCGAGAAGTTATGAGCTTAATGAATCCG
EX755440       <-- TCCTCTCTTCCTCATCATCGTACCGAGAAGTTATGAGCTTAATGAATCCG
EX776345       --> ..................................................
EX776752       --> ..................................................
EX759523       --> ..................................................
EV546922       --> ..................................................
EW729083       --> TCCTCTCTTCCTCATCATCGTGCCGAGAAGTTg.................
EX900450       --> ..................................................
FD959839       --> ..................................................

               1101   -   1151
UN21820        --> AGGATATTTTTGAAGGAGATAGGCACACTTAGACGCCAAGAGATGAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- AGGATATTTTTGAAGGAGATAGGCACACTTAGACGCCGAGAGATGAAGAG
EV551905       <-- AGGATATTTTTGAAGGAGATAGGCACGCTTAGACGCCAAGAGATGAAGAG
EX772376       <-- AGGATATTTTTGAAGGATATAGGCACACTTAGACGCCAAGAGATGATGAG
FD963565       <-- AGGATATTTTTGAAGGAGATAGGCACACTTAGACGCCAAGAGATGAAGAG
EX896530       <-- AGGATATTTTTGAAGGATATAGGCACACTTAGACACCAAGAGATGAAGAG
EX772900       <-- AGGATATTTTTGAAGGATATAGGCACACTTAGACGCCAAGAGATGATGAG
EY932882       <-- AGGATATTTTTGAAGGAGATAGGCACACTTAGACGCCAAGAGATGAAGAG
FD542132       <-- AGGATATTTTTGAAGGAGATAGGCACACTTAGACGCCAAGAGATGAAGAG
EX755440       <-- AGGATATTTTTGAAGGAGATAGGCACACCTAGACGCCAAGAGATGAAGAG
EX776345       --> ..................................................
EX776752       --> ..................................................
EX759523       --> ..................................................
EV546922       --> ..................................................
EW729083       --> ..................................................
EX900450       --> ..................................................
FD959839       --> ..................................................

               1151   -   1201
UN21820        --> CCCAGGGATGAGAATAAGAGCAAGACCAGTAAAAACAACAGAGAACAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- CCCAGGGATGAGAATAAGAGCAAGACCAGT....................
EV551905       <-- CCCAGGGATGAGAATAAGAGCAAGACCAGTAAAAACAACAGAGAACAATG
EX772376       <-- CCCAGGGATGAGAATAAGAGCAAGACCAGTAAAAACAACAGAGAACAATG
FD963565       <-- CCCAGGGATGAGAATAAGAGCAAGACCAGTAAAAACAACAGAGAACAATG
EX896530       <-- CCCAGGGATGAGAATAAGAGCAAGACCAGTAAAAACAACAGAGAACAATG
EX772900       <-- CCCAGGGATGAGAATAAGAGCAAGACCAGTAAAAA...............
EY932882       <-- CCCAGGGATGAGAATAAGAGCAAGACCAGTAAAAACAACAAAGAACAATG
FD542132       <-- CCCAGGGATGAGAATAAGAGCAAGACCAGTAAAAACAACAGAGAACAATG
EX755440       <-- CCCAGGGATGAGAATAAGAGCAAGACCAGTAAAAACAACAGAGAACAATG
EX776345       --> ..................................................
EX776752       --> ..................................................
EX759523       --> ..................................................
EV546922       --> ..................................................
EW729083       --> ..................................................
EX900450       --> ..................................................
FD959839       --> ..................................................

               1201   -   1251
UN21820        --> ACACCATTTTCTTTT----T-TTTT-GGGTAGAAATTGTTGTCTTTATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724338       <-- ..................................................
EV551905       <-- ACACCATTTCCTTTT----T-TTTT-GGGTAGAAATTGTTGTCTTTATTT
EX772376       <-- ACACCATTTTATTTT----A-TTTTAGGGTAGAAATTGTTGTCTTTATTT
FD963565       <-- ACACCATTTCCTTTT----T-TTTT-TGGTAGAAATTGTTGTCTTTATTT
EX896530       <-- ACACCATTTTATTTTATTTTATTTTAGGGTAGAAATTGTTGTCTTTATTT
EX772900       <-- ..................................................
EY932882       <-- ACACCATTTTCTTTT----T---TA-GGGTAGAAATTGTTGTCTTTATTT
FD542132       <-- ACACCATTTTCTTTT----T-TTTA-GGGTAGAAA...............
EX755440       <-- ACACCATTTCCTTTT----T-TTTT-GGGTAGAAATTGTTGTCTTTATTT
EX776345       --> ..................................................
EX776752       --> ..................................................
EX759523       --> ..................................................
EV546922       --> ..................................................
EW729083       --> ..................................................
EX900450       --> ..................................................
FD959839       --> ..................................................

               1251   -   1301
UN21820        --> TCAATATTATCTCCC
                   ~~~~~~~~~~~~~~~
EW724338       <-- ...............
EV551905       <-- TCAATATTc......
EX772376       <-- TCAATATTATCTCCC
FD963565       <-- TCAATATTcc.....
EX896530       <-- TCAATATTcc.....
EX772900       <-- ...............
EY932882       <-- TCAATATTcc.....
FD542132       <-- ...............
EX755440       <-- TCAATATTcc.....
EX776345       --> ...............
EX776752       --> ...............
EX759523       --> ...............
EV546922       --> ...............
EW729083       --> ...............
EX900450       --> ...............
FD959839       --> ...............