1      -     51
UN21840        --> AAATTAATCTTTTTAGTTTTATTAAATCATAATGCACTCACACATCTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- .ggTTAATCTTTTTAGTTTTATTAAATCATAATGCACTCACACATCCATA
EY908428       <-- ..gaTAATCTTTT-AGTTT-ATTAAATCATAATGCACTCACACATCTATA
EV535263       <-- ..................................................
EV566560       <-- ..................................................
EY921549       <-- ..................................................
EY931754       <-- ..................................................
EV537421       <-- ..................................................
EY908914       <-- ..................................................
EV537409       <-- ..................................................
FD974032       <-- ..................................................
EY930082       <-- ..................................................
FD541375       <-- ..................................................
FD973337       <-- ..................................................
FD543610       <-- ..................................................
EV571663       --> AAATTAATCTTTTTAGTTTTATTAAATCATAATGCACTCACACATCTATA
EY904124       --> .gATTAATCTTTTTAGTTTTATTAAATCATAATGCACTCACACATCTATA
EY917674       --> agATTAATCTTTTTAGTTTTATTAAATCATAATGCACTCACACATCTATA
FD567160       --> cgATTAATCTTTTTAGTTTTATTAAATCATAATGCACTCACACATCTATA
EW720441       --> .ggTTAATCTTTTTAGTTTTATTAAATCATAATGCACTCACACATCCATA
FY428422       --> gagaaaacCTTTTTAGTTTTATTAAATCATAATGCACTCACACATCTATA
EV541642       --> ..............AGTTTTATTAAATCATAATGCACTCACACATCTATA
EY927631       --> ..................................................
FD969598       --> ..................................................

               51     -    101
UN21840        --> T--GTGTTGGCATCGGATAGAAACATTTTTTT-GTTACAGCTTTGTAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- T--GTGTTGGCATCGGATAGAAACATTTTTTTTGTTACAGCTTTGTAAAA  Raphanus sativus var. oleiformis
EY908428       <-- T--GTGTTGGCATCGGATAGAAACATTTTTTT-GTTACAGCTTTGTAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535263       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566560       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY921549       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY931754       <-- ..................................................  Raphanus sativus var. oleiformis
EV537421       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908914       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537409       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974032       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930082       <-- ..................................................  Raphanus sativus var. oleiformis
FD541375       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973337       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543610       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571663       --> TATGTGTTGGCATCGGATAAAAACATTTTTTTTGTTACAGCTTTGTAAAA  Raphanus raphanistrum subsp. landra
EY904124       --> T--GTGTTGGCATCGGATAGAAACATTTTTTT-GTTACAGCTTTGTAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY917674       --> TATGTGTTGGCATCGGATAGAAACATTTTTTTTGTTACAGCTTTGTAAAA  Raphanus raphanistrum subsp. landra
FD567160       --> T--GTGTTGGCATCGGATAGAAACATTTTTTT-GTTACAGCTTTGTAAAA  Raphanus sativus var. oleiformis
EW720441       --> T--GTGTTGGCATCGGATAGAAACATTTTTTTTGTTACAGCTTTGTAAAA  Raphanus sativus var. oleiformis
FY428422       --> T--GTGTTGGCATCGGATAGAAACATTTTTTT-GTTACAGCTTTGTAAAA  Raphanus sativus cv GSK3-1
EV541642       --> T--GTGTTGGCATCGGATAGAAACATTTTTT--GTTACAGCTTTGTAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY927631       --> ............................................GTAAAA  Raphanus sativus var. oleiformis
FD969598       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               101    -    151
UN21840        --> GTCTCCCTTACGTGACTTGAAAAAGGGTACGAAAAAAGGAAAAACAAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- GTCTCCCTTACGTGACTTGAAAAAGGGTACGAAAAAAGGAAAAACAAAAT
EY908428       <-- GTCTCCCTTACGTGACTTGAAAAAGGGTACGAAAAAAGGAAAAACAAAAT
EV535263       <-- ........TACGTGACTTGAAAAAGGGTACGAAAAAAGGAAAAACAAAAT
EV566560       <-- .........ACGTGACTTGAAAAAGGGTACGAAAAAAGGAAAAACAAATT
EY921549       <-- ..................................................
EY931754       <-- ..................................................
EV537421       <-- ..................................................
EY908914       <-- ..................................................
EV537409       <-- ..................................................
FD974032       <-- ..................................................
EY930082       <-- ..................................................
FD541375       <-- ..................................................
FD973337       <-- ..................................................
FD543610       <-- ..................................................
EV571663       --> GTCTCCCTTACGTGACTTGAAAAAGGGTACAAAAAAAGGAAAAACAAATT
EY904124       --> GTCTCCCTTACGTGACTTGAAAAAGGGTACGAAAAAAGGAAAAACAAAAT
EY917674       --> GTCTCCCTTACGTGACTTGAAAAAGGGTACGAAAAAAGGAAAAACAAATT
FD567160       --> GTCTCCCTTACGTGACTTGAAAAAGGGTACAAAAAAAGGAAAAACAAAAT
EW720441       --> GTCTCCCTTACGTGACTTGAAAAAGGGTACGAAAAAAGGAAAAACAAAAT
FY428422       --> GTCTCCCTTACGTGACTTGAAAAAGGGTACGAAAAAAGGAAAAACAAAAT
EV541642       --> GTCTCCCTTACGTGACTTGAAAAAGGGTACGAAAAAAGGAAAAACAAAAT
EY927631       --> GTCTCCCTTACGTGACTTGAAAAAGGGTACGAAAAAAGGAAAAACAAAAT
FD969598       --> ..................................................

               151    -    201
UN21840        --> TGGATGTGAAAGCCCTAGTGTGTTGATCTGAGCTTCAACACTTTACGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- TGGATGTGAAAGCCCTAGTGTGTTGATCTGAGCTTCAACACTTTACGCTT  Raphanus sativus var. oleiformis
EY908428       <-- TGGATGTGAAAGCCCTAGCGTGTTGATCTGAGCTTCAACACTTTACGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535263       <-- TGGATGTGAAAGCCCTAGTGTGTTGATCTGAGCTTCAACACTTTACGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566560       <-- TGGACGTGAAAGCCCTAGTGTCTTGATATGAACTTCAACATTTTACACTT  Raphanus raphanistrum subsp. landra
EY921549       <-- ..................TGTGTTGATATGAACTTCAACATTTTACACTT  Raphanus raphanistrum subsp. landra
EY931754       <-- ..................................................  Raphanus sativus var. oleiformis
EV537421       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908914       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537409       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974032       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930082       <-- ..................................................  Raphanus sativus var. oleiformis
FD541375       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973337       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543610       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571663       --> TGGACGTGAAAGCCCTAGTGTCTTGATATGAACTTCAACATTTTACACTT  Raphanus raphanistrum subsp. landra
EY904124       --> TGGATGTGAAAGCCCTAGCGTGTTGATCTGAGCTTCAACACTTTACGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY917674       --> TGGATGTGAAAGCCCTAGTGTGTTGATATGAACTTCAACATTTTACACTT  Raphanus raphanistrum subsp. landra
FD567160       --> TGGATGTGAAAGCCCTAGTGTGTTGATCTGAGCTTCAACACTTTACGCTT  Raphanus sativus var. oleiformis
EW720441       --> TGGATGTGAAAGCCCTAGTGTGTTGATCTGAGCTTCAACACTTTACGCTT  Raphanus sativus var. oleiformis
FY428422       --> TGGATGTGAAAGCCCTAGTGTGTTGATCTGAGCTTCAACACTTTACGCTT  Raphanus sativus cv GSK3-1
EV541642       --> TGGATGTGAAAGCCCTAGTGTGTTGATCTGAGCTTCAACACTTTACGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY927631       --> TGGATGTGAAAGCCCTAGTGTGTTGATCTGAGCTTCAACACTTTACGCTT  Raphanus sativus var. oleiformis
FD969598       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               201    -    251
UN21840        --> GCCCAGGTGCCTTGACGACAGGTCCAACGCAAGCCTTTGGGTTCTGGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- GCCCAGGTGCCTTGACAACAGGTCCAACGCAAGCCTTTGGGTTCTGGGTT  Raphanus sativus var. oleiformis
EY908428       <-- GCCCAGGTGCCTTGACGACAGGTCCAACGCAAGCCTTTAGGTTCTGGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535263       <-- GCCCAGGTGCCTTGACGACAGGTCCAACGCAAGCCTTTGGGTTCTGGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566560       <-- TGCCAGGTGCCTTGACGACAGGTCCACCGCAAGCCTTTGGGTTCTGAGTT  Raphanus raphanistrum subsp. landra
EY921549       <-- TGCCAGGTGC-TTGACGACAGGTCCACCGCAAGC-TTTGGGTTCTGAGTT  Raphanus raphanistrum subsp. landra
EY931754       <-- ..................................................  Raphanus sativus var. oleiformis
EV537421       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908914       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537409       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974032       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930082       <-- ..................................................  Raphanus sativus var. oleiformis
FD541375       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973337       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543610       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571663       --> TGCCAGGTGCCTTGACGACAGGTCCACCGCAAGCCTTTGGGTTCTGAGTT  Raphanus raphanistrum subsp. landra
EY904124       --> GCCCAGGTGCCTTGACGACAGGTCCAACGCAAGCCTTTAGGTTCTGGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY917674       --> TGCCAGGTGCCTTGACGACAGGTCCACCGCAAGCCTTTGGGTTCTGAGTT  Raphanus raphanistrum subsp. landra
FD567160       --> GCCCAGGTGCCTTGACAACAGGTCCAACGCAAGCCTTTGGGTTCTGGGTT  Raphanus sativus var. oleiformis
EW720441       --> GCCCAGGTGCCTTGACAACAGGTCCAACGCAAGCCTTTGGGTTCTGGGTT  Raphanus sativus var. oleiformis
FY428422       --> GCCCAGGTGCCTTGACGACAGGTCCAACGCAAGCCTTTGGGTTCTGGGTT  Raphanus sativus cv GSK3-1
EV541642       --> GCCCAGGTGCCTTGACGACAGGTCCAACGCAAGCCTTTGGGTTCTGGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY927631       --> GCCCAGGTGCCTTGACAACAGGTCCAACGCAAGCCTTTGGGTTCTGGGTT  Raphanus sativus var. oleiformis
FD969598       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               251    -    301
UN21840        --> CCCACAAGCTTAGGTGTGACGTTTGTGCACTCGAAAGTGGGTGGACCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- CCCACAAGCTTAGGTGTGACGTTTGTGCACTCGAAAGTGGGTGGACCATC  Raphanus sativus var. oleiformis
EY908428       <-- CCCACAAGCTTAGGTGTGACGTTTGTGCATTCGAAAGTGGGTGGACCGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535263       <-- CCCACAAGCTTAGGTGTGGCGTTTGTGCATTCGAAAGTGGGTGGACCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566560       <-- CCCACAAGCTTAGGTGTGACGTTTGTGCACTCGAAAGTGGGTGGACCATC  Raphanus raphanistrum subsp. landra
EY921549       <-- CCCACAAGCTTAGGTGTGACGTTTGTGCACTCGAAAGTGGGTGGACCATC  Raphanus raphanistrum subsp. landra
EY931754       <-- ..................................................  Raphanus sativus var. oleiformis
EV537421       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908914       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537409       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974032       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930082       <-- ..................................................  Raphanus sativus var. oleiformis
FD541375       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973337       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543610       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571663       --> CCCACAAGCTTAGGTGTGACGTTTGTGCACTCGAAAGTGGGTGGACCATC  Raphanus raphanistrum subsp. landra
EY904124       --> CCCACAAGCTTAGGTGTGACGTTTGTGCATTCGAAAGTGGGTGGACCGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY917674       --> CCCACAAGCTTAGGTGTGACGTTTGTGCACTCGAAAGTGGGTGGACCATC  Raphanus raphanistrum subsp. landra
FD567160       --> CCCACAAGCTTAGGTGTGACGTTTGTGCACTCGAAAGTGGGTGGACCATC  Raphanus sativus var. oleiformis
EW720441       --> CCCACAAGCTTAGGTGTGACGTTTGTGCACTCGAAAGTGGGTGGACCATC  Raphanus sativus var. oleiformis
FY428422       --> CCCACAAGCTTAGGTGTGACGTTTGTGCACTCGAAAGTGGGTGGACCATC  Raphanus sativus cv GSK3-1
EV541642       --> CCCACAAGCTTAGGTGTGACGTTTGTGCATTCGAAAGTGGGTGGACCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY927631       --> CCCACAAGCTTAGGTGTGACGTTTGTGCACTCGAAAGTGGGTGGACCATC  Raphanus sativus var. oleiformis
FD969598       --> ................................................TC  Raphanus raphanistrum subsp. raphanistrum (MS)

               301    -    351
UN21840        --> AGGTCCTTTGTACTCAATGTTAATGTCTCCAATCTCAACATTCTCACATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- AGGTCCTTTGTATTCAATGTTAATGTCTCCAATCTCAACATTCTCACATG  Raphanus sativus var. oleiformis
EY908428       <-- AGGTCCTTTGTACTCAATGTTAATGTCTCCAATCTCAACATTCTCACATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535263       <-- AGGTCCTTTGTACTCAATGTTAATGTCTCCAATCTCAACATTCTCACATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566560       <-- AGCTCCTTTGCACTCAATGTTAATGTCTCCAATCTCAACATTCTCACATG  Raphanus raphanistrum subsp. landra
EY921549       <-- AGCTCCTTTGTACTCAATGTTAATGTCTCCAATCTCAACATTCTCACATG  Raphanus raphanistrum subsp. landra
EY931754       <-- ..................................................  Raphanus sativus var. oleiformis
EV537421       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908914       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537409       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974032       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930082       <-- ..................................................  Raphanus sativus var. oleiformis
FD541375       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973337       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543610       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571663       --> AGCTCCTTTGCACTCAATGTTAATGTCTCCAATCTCAACATTCTCACATG  Raphanus raphanistrum subsp. landra
EY904124       --> AGGTCCTTTGTACTCAATGTTAATGTCTCCAATCTCAACATTCTCACATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY917674       --> AGCTCCTTTGTACTCAATGTTAATGTCTCCAATCTCAACATTCTCACATG  Raphanus raphanistrum subsp. landra
FD567160       --> AGGTCCTTTGTATTCAATGTTAATGTCTCCAATCTCAACATTCTCACATG  Raphanus sativus var. oleiformis
EW720441       --> AGGTCCTTTGTATTCAATGTTAATGTCTCCAATCTCAACATTCTCACATG  Raphanus sativus var. oleiformis
FY428422       --> AGGGCCTTTGTATTCAATGTTAATGTCTCCAATCTCAACATTCTCACATG  Raphanus sativus cv GSK3-1
EV541642       --> AGGTCCTTTGTACTCAATGTTAATGTCTCCAATCTCAACATTCTCACATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY927631       --> AGGTCCTTTGTATTCAATGTTAATGTCTCCAATCTCAACATTCTCACATG  Raphanus sativus var. oleiformis
FD969598       --> AGGTCCTTTGTACTCAATGTTAATGTCTCCAATCTCAACATTCTCACATG  Raphanus raphanistrum subsp. raphanistrum (MS)

               351    -    401
UN21840        --> GATGTCCCTTGCTGCACAATAGCTTCACTGCGTCCTTGTTCCCTGATGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- GATGTCCCTTGCTGCACAATAGCTTCACTGCGTCCTTGTTCCCTGATGTT
EY908428       <-- GATGTCCCTTGCTGCACAATAGCTTCACTGCGTCCTTGTTCCCTGATGTT
EV535263       <-- GATGTCCCTTGCTGCACAATAGCTTCACTGCGTCCTTGTTCCCTGATGTT
EV566560       <-- GATGTCCCTTGCTGCACAATAGCTTCACTGCGTCCTTGTTCCCTGATGTT
EY921549       <-- GATGTCCCTTGCTGCACAATAGCTTCACTGCGTCCTTGTTCCCTGATGTT
EY931754       <-- .............................................ATGTT
EV537421       <-- ..................................................
EY908914       <-- ..................................................
EV537409       <-- ..................................................
FD974032       <-- ..................................................
EY930082       <-- ..................................................
FD541375       <-- ..................................................
FD973337       <-- ..................................................
FD543610       <-- ..................................................
EV571663       --> GATGTCCCTTGCTGCACAATAGCTTCACTGCGTCCTTGTTCCCTGATGTT
EY904124       --> GATGTCCCTTGCTGCACAATAGCTTCACTGCGTCCTTGTTCCCTGATGTT
EY917674       --> GATGTCCCTTGCTGCACAATAGCTTCACTGCGTCCTTGTTCCCTGATGTT
FD567160       --> GATGTCCCTTGCTGCACAATAGCTTCACTGCGTCCTTGTTCCCTGATGTT
EW720441       --> GATGTCCCTTGCTGCACAATAGCTTCACTGCGTCCTTGTTCCCTGATGTT
FY428422       --> GATGTCCCTTGCTGCACAATAGCTTCACTGCGTCCTTGTTCCCTGATGTT
EV541642       --> GATGTCCCTTGCTGCACAATAGCTTCACTGCGTCCTTGTTCCCTGATGTT
EY927631       --> GATGTCCCTTGCTGCACAATAGCTTCACTGCGTCCTTGTTCCCTGATGTT
FD969598       --> GATGTCCCTTGCTGCACAATAACTTCACTGCGTCCTTGTTCCCTGATGTT

               401    -    451
UN21840        --> CCTCTAATCTTCCTGAAGGTAATGTCCACCAGCTTAATTGTTGATGGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- CCTCTAATCTTCCTGAAGGTAATGTCCACCAGCTTAATTGTTGATGGTTT  Raphanus sativus var. oleiformis
EY908428       <-- CCTCTAATATTCCTGAAGGCAATGTCCACCAGCTTAATTGTTGATGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535263       <-- CCTCTAATATTCCTGAAGGCAATGTCCACCAGCTTAATTGTTGATGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566560       <-- CCTCTAATCTTCCTGAAGGTAATGTCCACCAGCTTAATTGTTGATGGTTT  Raphanus raphanistrum subsp. landra
EY921549       <-- CCTCTAATCTTCCTGAAGGTAATGTCCACCAGCTTAATTGTTGATGGTTT  Raphanus raphanistrum subsp. landra
EY931754       <-- CCTCTAATCTTC-TGAAGGTAATGTCCACCAGCTTAATTGTTGATGGTTT  Raphanus sativus var. oleiformis
EV537421       <-- ...............AAGGCAATGTCCACCAGCTTAATTGTTGATGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908914       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537409       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974032       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930082       <-- ..................................................  Raphanus sativus var. oleiformis
FD541375       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973337       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543610       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571663       --> CCTCTAATCTTCCTGAAGGTAATGTCCACCAGCTTAATTGTTGATGGTTT  Raphanus raphanistrum subsp. landra
EY904124       --> CCTCTAATATTCCTGAAGGCAATGTCCACCAGCTTAATTGTTGATGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY917674       --> CCTCTAATCTTCCTGAAGGTAATGTCCACCAGCTTAATTGTTGATGGTTT  Raphanus raphanistrum subsp. landra
FD567160       --> CCTCTAATCTTCCTGAAGGTAATGTCCACCAGCTTAATTGTTGATGGTTT  Raphanus sativus var. oleiformis
EW720441       --> CCTCTAATCTTCCTGAAGGTAATGTCCACCAGCTTAATTGTTGATGGTTT  Raphanus sativus var. oleiformis
FY428422       --> CCTCTAATCTTCCTGAAGGTAATGTCCACCAGCTTAATTGTTGAGGGTTT  Raphanus sativus cv GSK3-1
EV541642       --> CCTCTAATATTCCTGAAGGCAATGTCCACCAGCTTAATTGTTGATGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY927631       --> CCTCTAATCTTCCTGAAGGTAATGTCCACCAGCTTAATTGTTGATGGTTT  Raphanus sativus var. oleiformis
FD969598       --> CCTCTAATATTCCTGAAGGCAATGTCCACCAGCTTAATTGTTGATGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)

               451    -    501
UN21840        --> GTTCTTGTTGCATTGGTTCCAAGGGCAGTACTCCTGGTCAATGAGGATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- GTTCTTGTTGCATTGGTTCCAAGGGCAGTACTCCTGGTCGATGAGGATTG  Raphanus sativus var. oleiformis
EY908428       <-- GTTCTTGTTGCATTGGTTCCAAGGGCAGTACTCCTGGTCAATGAGGATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535263       <-- GTTCTTGTTGCATTGGTTCCAAGGGCAGTACTCCTGGTCAATGAGGATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566560       <-- GTTCTTGTTGCATTGGTTCCAAGGGCAGTACTCCTGGTCAATGAGGATTG  Raphanus raphanistrum subsp. landra
EY921549       <-- GTTCTTGTTGCATTGGTTCCAAGGGCAGTACTCCTGGTCAATGAGGATTG  Raphanus raphanistrum subsp. landra
EY931754       <-- GTTCTTGTTGCATTGGTTCCAAGGGCAGTACTCCTGGTCGATGAGGATTG  Raphanus sativus var. oleiformis
EV537421       <-- GTTCTTGTTGCATTGGTTCCAAGGGCAGTACTCCTGGTCAATGAGGATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908914       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537409       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974032       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930082       <-- ..................................................  Raphanus sativus var. oleiformis
FD541375       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973337       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543610       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571663       --> GTTCTTGTTGCATTGGTTCCAAGGGCAGTACTCCTGGTCAATGAGGATTG  Raphanus raphanistrum subsp. landra
EY904124       --> GTTCTTGTTGCATTGGTTCCAAGGGCAGTACTCCTGGTCAATGAGGATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY917674       --> GTTCTTGTTGCATTGGTTCCAAGGGCAGTACTCCTGGTCAATGAGGATTG  Raphanus raphanistrum subsp. landra
FD567160       --> GTTCTTGTTGCATTGGTTCCAAGGGCAGTACTCCTGGTCGATGAGGATTG  Raphanus sativus var. oleiformis
EW720441       --> GTTCTTGTTGCATTGGTTCCAAGGGCAGTACTCCTGGTCGATGAGGATTG  Raphanus sativus var. oleiformis
FY428422       --> GTTCTTGTTGCATTGGTTCCAAGGGCAGTACTCCTGGTCGATGAGGATTG  Raphanus sativus cv GSK3-1
EV541642       --> GTTCTTGTTGCATTGGTTCCAAGGGCAGTACTCCTGGTCAATGAGGATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY927631       --> GTTCTTGTTGCATTGGTTCCAAGGGCAGTACTCCTGGTCGATGAGGATTG  Raphanus sativus var. oleiformis
FD969598       --> GTTCTTGTTGCATTGGTTCCAAGGGCAGTACTCCTGGTCAATGAGGATTG  Raphanus raphanistrum subsp. raphanistrum (MS)

               501    -    551
UN21840        --> GGTTGCTAACTTTGTCAAGGATGATATCCTCAAAATGAATACCGGCAGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- GGTTGCTAACGTTGTTAAGGATGATATCCTCAAAATGc............  Raphanus sativus var. oleiformis
EY908428       <-- GGTTGCTAACTTTGTCAAGGATGATATTATCAAAATGAATACCGGCAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535263       <-- GGTTGCTAACTTTGTCAAGGATGATATTCTCAAAATGAATACCGGCAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566560       <-- GGTTGCTAACATTGTCAAGGATGATATCCTCAAAATGAATACCGGTAGCG  Raphanus raphanistrum subsp. landra
EY921549       <-- GGTTGCTAACATTGTCAAGGATGATATCCTCAAAATGAATACCGGCAGCG  Raphanus raphanistrum subsp. landra
EY931754       <-- GGTTGCTAACGTTGTTAAGGATGATATCCTCAAAATGAATACCGGAAGCC  Raphanus sativus var. oleiformis
EV537421       <-- GGTTGCTAACTTTGTCAAGGATGATATTCTCAAAATGAATACCGGCAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908914       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537409       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974032       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930082       <-- ..................................................  Raphanus sativus var. oleiformis
FD541375       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973337       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543610       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571663       --> GGTTGCTAACATTGTCAAGGATGATATCCTCAAAATGAATACCGGTAGCG  Raphanus raphanistrum subsp. landra
EY904124       --> GGTTGCTAACTTTGTCAAGGATGATATTATCAAAATGAATACCGGCAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY917674       --> GGTTGCTAACATTGTCAAGGATGATATCCTCAAAATGAATACCGGCAGCG  Raphanus raphanistrum subsp. landra
FD567160       --> GGTTGCTAACGTTGTTAAGGATGATATCCTCAAAATGAATACCGGAAGCC  Raphanus sativus var. oleiformis
EW720441       --> GGTTGCTAACGTTGTTAAGGATGATATCCTCAAAATGc............  Raphanus sativus var. oleiformis
FY428422       --> GGTTGCTAACGTTGTTAAGGATGATATCCTCAAAATGAATACCGGAAGCC  Raphanus sativus cv GSK3-1
EV541642       --> GGTTGCTAACTTTGTCAAGGATGATATTCTCAAAATGAATACCGGCAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY927631       --> GGTTGCTAACGTTGTTAAGGATGATATCCTCAAAATGAATACCGGAAGCC  Raphanus sativus var. oleiformis
FD969598       --> GGTTGCTAACTTTGTCAAGGATGATATTCTCAAAATGAATACCGGCAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)

               551    -    601
UN21840        --> GTTGTGGCGCAAGCCGCAGAGGGCCATGTCTTGATCCTCAGACCGTTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- ..................................................
EY908428       <-- GTTGTGGCGCAAGCCGCAGAGGGCCATGTCTTGATCCTCAGACCGTTATC
EV535263       <-- GTTGTGGCGCAAGCCGCAGAGGGCCATGTCTTGATCCTCAGACCGTTATC
EV566560       <-- GTTGTGGCGCAAGCCGCAGAGGGCCATGTCTTGATCCTCAGACCGTTATC
EY921549       <-- GTTGTGGCGCAAGCCGTAGAGGGCCATGTCTTGATCCTCAGACCGTTATC
EY931754       <-- GTTGTGGCGCAAGCCGCAGAGGGCCATGTCTTGGTCCTCAGACCGTTATC
EV537421       <-- GTTGTGGCGCAAGCCACAGAGGGCCATGTCTTGATCCTCAGACCGTTATC
EY908914       <-- ..................................................
EV537409       <-- ..................................................
FD974032       <-- ..................................................
EY930082       <-- ..................................................
FD541375       <-- ..................................................
FD973337       <-- ..................................................
FD543610       <-- ..................................................
EV571663       --> GTTGTGGCGCAAGCCGCAAAGGGCCATGTCTTGATCCTCAGACCGTTATC
EY904124       --> GTTGTGGCGCAAGCCGCAAAAGGCCATGTCTTGATCCTCAAACCGTTATC
EY917674       --> GTTGTGGCGCAAGCCGTAGAGGGCCATGTCTTGATCCTCAGACCGTTATC
FD567160       --> GTTGTGGCGCAAGCCGCAAAGGGCCATGTCTTGATCCTCAGACCGTTATC
EW720441       --> ..................................................
FY428422       --> GTTGTGGCGCAAGCCGCAAAGGGCCATGTCTTGATCCTCAGACCGTTATC
EV541642       --> GTTGTGGCGCAAGCCGCAAAGGGCCATGTCTTGATCCTCAAACCGTTATC
EY927631       --> GTTGTGGCGCAAGCCGC.................................
FD969598       --> GTTGTGACGCAAGCCGC.................................

               601    -    651
UN21840        --> GGTTCCCAGGAGGGTGCAGTTCATAACCTTAATGTCATTTACATCTTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- ..................................................  Raphanus sativus var. oleiformis
EY908428       <-- GGTTCCCACGAGGGTGCAGTTCATAACCTTAATATCATTTACATCTTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535263       <-- GGTTCCCACGAGGGTGCAGTTCATAACCTTAATATCATTTACATCTTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566560       <-- GGTTCCCAGGAGGGTGCAGTTCATAACCTTAATGTCATTTACATCTTGCT  Raphanus raphanistrum subsp. landra
EY921549       <-- GGTTCCCAGGAGGGTGCAGTTCATAACCTTAATGTCATTTACATCTTGCT  Raphanus raphanistrum subsp. landra
EY931754       <-- GGTTCCCTGGAGGGTGCAGTTCATAACCTTAATGTCATTTACATCTTGCT  Raphanus sativus var. oleiformis
EV537421       <-- GGTTCCCACGAGGGTGCAGTTCATAACCTTAATATCATTTACATCTTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908914       <-- ......................................TTACATCT-GCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537409       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974032       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930082       <-- ..................................................  Raphanus sativus var. oleiformis
FD541375       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973337       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543610       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571663       --> GGTTCCCAGGAGGGTGCAGTTCATAACCTTAATGTCATTTACATCTTGCT  Raphanus raphanistrum subsp. landra
EY904124       --> GGTTCCCACGAGGGTGCAGTTCATAACCTTAATATCATTTACATCTTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY917674       --> GGTTCCCAGGAGGGTGCAGTTCATAACCTTAATGTCATTTACATCTTGCT  Raphanus raphanistrum subsp. landra
FD567160       --> GGTTCCCTGGAGGGTGCAGTTCATAACCTTAATGTCATTTACATCTTGCT  Raphanus sativus var. oleiformis
EW720441       --> ..................................................  Raphanus sativus var. oleiformis
FY428422       --> GGTTCCCTGGAGGGTGCAGTTCATAACCTTAATGTCATTTACATCTTGCT  Raphanus sativus cv GSK3-1
EV541642       --> GGTTCCCACGAGGGTGCAGTTCATAACCTTAATATCATTTACATCTTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY927631       --> ..................................................  Raphanus sativus var. oleiformis
FD969598       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               651    -    701
UN21840        --> CCCATCCGTACCTTCCAAGGCTTCCAACACTGATTCCATGTCCTGG-ACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- ..................................................
EY908428       <-- CCCATCCct.........................................
EV535263       <-- CCCATCCGTACCTTCCAAGGCTTCCAACACTGATTCCACGTCCTGG-ACC
EV566560       <-- CCCATCCGTACCTTCCAAGGCTTCCAACACTGATTCCATGTCCTGG-ACC
EY921549       <-- CCCATCCGTACCTTCCAAGGCTTCCAACACTGATTCCATGTCCTGG-ACC
EY931754       <-- CCCATCCGTACCTTCCAAGGCTTCCAACACTGATTCCATGTCCTGG-ACC
EV537421       <-- CCCATCCGTACCTTCCAAGGCTTCCAACACTGATTCCATGTCCTGG-ACC
EY908914       <-- CCCATC-GTAC-TTCCAAG-CTT--CACACTGATTCCATGTC-TG--ACC
EV537409       <-- ...............CAAGGCTTCCAACACTGATTCCATGTC-TGG-ACC
FD974032       <-- .................................TTCCATGTCCTGG-ACC
EY930082       <-- ..................................................
FD541375       <-- ..................................................
FD973337       <-- ..................................................
FD543610       <-- ..................................................
EV571663       --> CCCATCCGTACCTTCCAAGGCTTCCAACACTGATTCCATGTCCTGG-ACC
EY904124       --> CCCATCCct.........................................
EY917674       --> CCCATCCGTACCTTCCAAGGCTTCCAACACTGATTCCATGTCCTGGGACC
FD567160       --> CCCATCCGTACCTTCCAAGGCTTCCAACACTGATTCCATGTCCTGG-ACC
EW720441       --> ..................................................
FY428422       --> CCCATCCGTACCTTCCAAGGCTTCCAACACTGATTCCATGTCCTGG-ACC
EV541642       --> CCCATCCGTACCTTCCAAGGCTTCCAACACTGATTCCATGTCCTGG-ACC
EY927631       --> ..................................................
FD969598       --> ..................................................

               701    -    751
UN21840        --> GCACACAACTTTCTCAATGAGGAGATTCTTCATCCCATCTCCCACGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- ..................................................
EY908428       <-- ..................................................
EV535263       <-- GCACACAACTTTCTCAATGAGGAGATTCTTCATCCCATCTCCCACGGAGA
EV566560       <-- GCACACAACTTTCTCAATGAGGAGATTCTTCATCCCATCTCCCACGGAGA
EY921549       <-- GCACACAACTTTCTCAATGAGGAGATTCTTCATCCCATCTCCCACGGAGA
EY931754       <-- GCACACAACTTTCTCGATGAGGAGATTCTTCATCCCATCTCCCACGGAGA
EV537421       <-- GCACACAACTTTCTCAATGAGGAGATTCTTCATCCCATCTCCCACGGAGA
EY908914       <-- GCACACAACTT-CTCAATGAG-AGATTCT-CATCCCATCTCCCACGGAGA
EV537409       <-- GCACACAACTTTCTCAATGAGGAGATTCTTCATCCCATCTCCCACGGAGA
FD974032       <-- GCACACAACTTTCTCAATGAGGAGATTCTTCATCCCATCTCCCACGGAGA
EY930082       <-- ..............CAATGAGGGGATTCTTCATCCCATCTCCCACGGAGA
FD541375       <-- ..........................TCTTCATCCCATCTCCCACGGAGA
FD973337       <-- .............................TCATCCCATCTCCCACGGAGA
FD543610       <-- ..................................................
EV571663       --> GCACACAACTTTCTCAATGAGGAGATTCTTCATCCCATCTCCCACGGAGA
EY904124       --> ..................................................
EY917674       --> GCACA.............................................
FD567160       --> GCACACAACTTTCTCGATGAGGAGATTCTTCAT.................
EW720441       --> ..................................................
FY428422       --> GCACACAACTTTCTCGATGAGGAGATTCTTCATCCCATCTCCCAC.....
EV541642       --> GCACACAACTTTCTCAATGAGGAGATTCTTCATCCCATCTCCCACGGAGA
EY927631       --> ..................................................
FD969598       --> ..................................................

               751    -    801
UN21840        --> TGCAGTCATCTCCTGTGGCGATCTTAGTGTTGAGGATCTTGACTCCCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- ..................................................
EY908428       <-- ..................................................
EV535263       <-- TGCAGTCATCTCCTGTGGCGATCTTAGTGTTGAGGATCTTGACTCCCTCA
EV566560       <-- TGCAGTCATCTCCTGTGGCGATCTTAGTGTTGAGGATCTTGACTCCCTCA
EY921549       <-- TGCAGTCATCTCCTGTGGCGATCTTAGTGTTGAGGATCTTGACTCCATCA
EY931754       <-- TGCAGTCATCTCCTGTGGCGATCTTAGTGTTGAGGATCTTGACTCCCTCA
EV537421       <-- TGCAGTCATCTCCTGTGGCGATCTTAGTGTTGAGGATCTTGACTCCCTCA
EY908914       <-- TGCAGTCATCTC-TGTGGCGATCTTAGTGTTGAGGATCTTGACTCCCTCA
EV537409       <-- TGCAGTCATCTCCTGTGGCGATCTTAGTGTTGAGGATCTTGACTCCCTCA
FD974032       <-- TGCAGTCATCTC-TGTGGCGATCTTAGTGTTGAGGATCTTGACTCCCTCA
EY930082       <-- TGCAGTCATCTC-TGTGGCGATCTTAGTGTTGAGGATCTTGACTCCCTCA
FD541375       <-- TGCAGTCATCTC-TGTGGCGATCTTAGTGTTGAGGATCTTGACTCCCTCA
FD973337       <-- TGCAGTCATCTCCTGTGGCGATCTTAGTGTTGAGGATCTTGACTCCCTCA
FD543610       <-- ..CAGTCATCTC-TGTAGCGATCTTAGTGTTGAGGATCTTGACTCCCTCA
EV571663       --> TGCAGTCATCTCCTGTGGCGATCTTAGTGTTGAGGATCTTGACTCCCTCA
EY904124       --> ..................................................
EY917674       --> ..................................................
FD567160       --> ..................................................
EW720441       --> ..................................................
FY428422       --> ..................................................
EV541642       --> TGCAGTCATCTCCTGTGGCGATCTTAGTGTTGAGGATCTTGACTCCCTCA
EY927631       --> ..................................................
FD969598       --> ..................................................

               801    -    851
UN21840        --> CATCTTCCCAAATGGATACCGTCAGTGTTGGGGCTTTCAGCTGGAGCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- ..................................................
EY908428       <-- ..................................................
EV535263       <-- CATCTTCCCAAATGGATACCGTCAGTGTTGGGGCTTTCAGCTGGAGCAAT
EV566560       <-- CATCTTCCCAAATGGATACCGTCAGTGTTGGGGCTTTCAGCTGGAGCAAT
EY921549       <-- CATCTTCCCAAATGGATACCGTCAGTGTTGGGGCTTTCAGCTGGAGCAAT
EY931754       <-- CATCTTCCCAAATGAATACCGTCAGTGTTGGGGCTTTCAGCTGGGGCAAT
EV537421       <-- CATCTTCCCAAATGGATACCGTCAGTGTTGGGGCTTTCAGCTGGAGCAAT
EY908914       <-- CATCTTCCCAAATGGATACCGTCAGTGTTGGGGCTTTCAGCTGGAGCAAT
EV537409       <-- CATCTTCCCAAATGGATACCGTCAGTGTTGGGGCTTTCAGCTGGAGCAAT
FD974032       <-- CATCTTCCCAAATGGATACCGTCAGTGTTGGGGCTTTCAGCTGGAGCAAT
EY930082       <-- CATCTTCCCAAATGGATACCGTCAGTGTTGGGGCTTTCAGCTGGAGCAAT
FD541375       <-- CATCTTCCCAAATGGATACCGTCAGTGTTGGGGCTTTCAGCTGGAGCAAT
FD973337       <-- CATCTTCCCAAATGGATACCGTCAGTGTTGGGGCTTTCAGCTGGAGCAAT
FD543610       <-- CATCTTCCCAAATGGATACCGTCAGTGTTGGGGCTTTCAGCTGGAGCAAT
EV571663       --> CATCTT............................................
EY904124       --> ..................................................
EY917674       --> ..................................................
FD567160       --> ..................................................
EW720441       --> ..................................................
FY428422       --> ..................................................
EV541642       --> CATCTTCCCAAATGGATACCGTCAGTGTTGGGGCTTTCAGCTGGAGCAAT
EY927631       --> ..................................................
FD969598       --> ..................................................

               851    -    901
UN21840        --> GATCTTGATGTTATCAAATGTCATGTTCTTGCCGCTGATAACGTTGAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- ..................................................
EY908428       <-- ..................................................
EV535263       <-- GATCTTGATGTTATCAAATGTCATGTTCTTGCCGCTGc............
EV566560       <-- GATCTTGATGTTATCAAATGTCATGTTCTTGCC.................
EY921549       <-- GATCTTGATGTTATCAAATGTCATGTTCTTGCCGCTGATAACGTTGAAGT
EY931754       <-- GATCTTGATGTTATCAAATGTCATGTTCTTGCCGCTGATAACGTTGAAGT
EV537421       <-- GATCTTGATGTTATCAAATGTCATGTTCTTGCCGCTGATAACGTTGAAGT
EY908914       <-- GATCTTGATGTTATCAAATGTCATGTTCTTGCCGCTGATAACGTTGAAGT
EV537409       <-- GATCTTGATGTTATCAAATGTCATGCTCTTGCCGCTGATAACGTTGAAGT
FD974032       <-- GATCTTGATGTTATCAAATGTCATGTTCTTGCCGCTGATAACGTTGAAGT
EY930082       <-- GATCTTGATGTTATCAAATGTCATGTTCTTGCCGCTGATAACGTTGAAGT
FD541375       <-- GATCTTGATGTTATCAAATGTCATGTTCTTGCCGCTGATAACGTTGAAGT
FD973337       <-- GATCTTGATGTTATCAAATGTCACGTTCTTGCCGCTGATAACGTTGAAGT
FD543610       <-- GATCTTGATGTTATCAAATGTCATGTTCTTGCCGCTGATAACGTTGAAGT
EV571663       --> ..................................................
EY904124       --> ..................................................
EY917674       --> ..................................................
FD567160       --> ..................................................
EW720441       --> ..................................................
FY428422       --> ..................................................
EV541642       --> GATCTTGATGTTATCAAATGTCA...........................
EY927631       --> ..................................................
FD969598       --> ..................................................

               901    -    951
UN21840        --> GGAAGTTTTTGGCATCTAATGAGGTTACGTCTCTTATATCAGCGTTATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- ..................................................
EY908428       <-- ..................................................
EV535263       <-- ..................................................
EV566560       <-- ..................................................
EY921549       <-- GGAAGTTTTTGGCATCTAATGAGGTTACGTCTCTTATATCAGCGTTATCC
EY931754       <-- GGAAGTTTTTGGCATCTAATGAGGTTACGTCTCTTATATCAGCGTTATCC
EV537421       <-- GGAAGTTTTTGGCATCTAATGAGGTTACGTCTCTTACATCAGCGTTATCC
EY908914       <-- GGAAGTTTTTGGCATCTAATGAGGTTACGTCTCTTATATCAGCGTTATCC
EV537409       <-- GGAAGTTTTTGGCATCTAATGAGGTTACGTCTCTTATATCAGCGTTATCC
FD974032       <-- GGAAGTTTTTGGCATCTAATGAGGTTACGTCTCTTATATCAGCGTTATCC
EY930082       <-- GGAAGTTTTTGGCATCTAATGAGGTTACGTCTCTTATATCAGCGTTATCC
FD541375       <-- GGAAGTTTTTGGCATCTAATGAGGTTACGTCTCTTATATCAGCGTTATCC
FD973337       <-- GGAAGTTTTTGGCATCTAATGAGGTTACGTCTCTTATATCAGCGTTATCC
FD543610       <-- GGAAGTTTTTGGCATCTAATGAGGTTACGTCTCTTATATCAGCGTTATCC
EV571663       --> ..................................................
EY904124       --> ..................................................
EY917674       --> ..................................................
FD567160       --> ..................................................
EW720441       --> ..................................................
FY428422       --> ..................................................
EV541642       --> ..................................................
EY927631       --> ..................................................
FD969598       --> ..................................................

               951    -   1001
UN21840        --> ACAAAATCAAACCTCACACTGATGGGAAGCTTCTTGCACTCAAAAGTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- ..................................................
EY908428       <-- ..................................................
EV535263       <-- ..................................................
EV566560       <-- ..................................................
EY921549       <-- ACAAAATCAAACCTtc..................................
EY931754       <-- ACAAAATCAAACCTCACACTGATGGGAAGCTTCTTGCACTCAAAAGTCTT
EV537421       <-- ACAAAATCAAACCTCACACTGATGGGAAGCTTCTTGCACTCAAAAGTCTT
EY908914       <-- ACAAAATCAAACCTCACACTGATGGGAAGCTTCTTGCACTCAAAAGTCTT
EV537409       <-- ACAAAATCAAACCTCACACTGATGGGAAGCTTCTTGCACTCAAAAGTCTT
FD974032       <-- ACAAAATCAAACCTCACACTGATGGGAAGCTTCTTGCACTCAAAAGTCTT
EY930082       <-- ACAAAATCAAACCTCACACTGATGGGAAGCTTCTTGCACTCAAAAGTCTT
FD541375       <-- ACAAAATCAAACCTCACACTGATGGGAAGCTTCTTGCACTCAAAAGTCTT
FD973337       <-- ACAAAATCAAACCTCGCACTGATGGGAAGCTTCTTGCACTCAAAAGTCTT
FD543610       <-- ACAAAATCAAACCTCACACTGATGGGAAGCTTCTTGCACTCAAAAGTCTT
EV571663       --> ..................................................
EY904124       --> ..................................................
EY917674       --> ..................................................
FD567160       --> ..................................................
EW720441       --> ..................................................
FY428422       --> ..................................................
EV541642       --> ..................................................
EY927631       --> ..................................................
FD969598       --> ..................................................

               1001   -   1051
UN21840        --> GTGGCAGTTATTGGCTTTCCAAGCTGCATTGCCTTCACCGTCAAATGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- ..................................................
EY908428       <-- ..................................................
EV535263       <-- ..................................................
EV566560       <-- ..................................................
EY921549       <-- ..................................................
EY931754       <-- GTGGCAGTTATTGGCTTTCCAAGCTGCATTGCCTTCACCGTCAAATGTTC
EV537421       <-- GTGGCAGTTATTGGCTTTCCAAGCTGCATTGCCTTCACCGTCAAATGTTC
EY908914       <-- GTGGCAGTTATTGGCTTTCCAAGCTGCATTGCCTTCACCGTCAAATGTTC
EV537409       <-- GTGGCAGTTATTGGCTTTCCAAGCTGCATTGCCTTCACCGTCAAATGTTC
FD974032       <-- GTGGCAGTTATTGGCTTTCCAAGCTGCATTGCCTTCACCGTCAAATGTTC
EY930082       <-- GTGGCAGTTATTGGCTTTCCAAGCTGCATTGCCTTCACCGTCAAATGTTC
FD541375       <-- GTGGCAGTTATTGGCTTTCCAAGCTGCATTGCCTTCACCGTCAAATGTTC
FD973337       <-- GTGGCAGTTATTGGCTTTCCAAGCTGCATTGCCTTCACCGTCAAATGTTC
FD543610       <-- GTGGCAGTTATTGGCTTTCCAAGCTGCATTGCCTTCACCGTCAAATGTTC
EV571663       --> ..................................................
EY904124       --> ..................................................
EY917674       --> ..................................................
FD567160       --> ..................................................
EW720441       --> ..................................................
FY428422       --> ..................................................
EV541642       --> ..................................................
EY927631       --> ..................................................
FD969598       --> ..................................................

               1051   -   1101
UN21840        --> CACCTCCGTTCAACTTAAAACCATTAATTTTTTCGAACACAACCCATCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- ..................................................
EY908428       <-- ..................................................
EV535263       <-- ..................................................
EV566560       <-- ..................................................
EY921549       <-- ..................................................
EY931754       <-- CACCTCCGTTCAACTTAAAACCATTAATTTTTTCGAACACAACCCATCTA
EV537421       <-- CACCTCCGTTCAACTTAAAACCATTAATTTTTTCc...............
EY908914       <-- CACCTCCGTTCAACTTAAAACCATTAATTTTTTCGAACACAACCCATCTA
EV537409       <-- CACCTCCGTTCAACTTAAAACCATTAATTTTTTCGAACACAACCCATCTA
FD974032       <-- CACCTCCGTTCAACTTAAAACCATTAATTTTTTCGAACACAACCCATCTA
EY930082       <-- CACCTCCGTTCAACTTAAAACCATTAATTTTTTCGAACACAACCCATCTA
FD541375       <-- CACCTCCGTTCAACTTAAAACCATTAATTTTTTCGAACACAACCCATCTA
FD973337       <-- CACCTCCGTTCAACTTAAAACCATTAATTTTTTCGAACACAACCCATCTA
FD543610       <-- CACCTCCGTTCAACTTAAAACCATTAATTTTTTCGAACACAACCCATCTA
EV571663       --> ..................................................
EY904124       --> ..................................................
EY917674       --> ..................................................
FD567160       --> ..................................................
EW720441       --> ..................................................
FY428422       --> ..................................................
EV541642       --> ..................................................
EY927631       --> ..................................................
FD969598       --> ..................................................

               1101   -   1151
UN21840        --> TCCTTTCCCTGGGTAGAGCCACCGTCAGCTTTGACGTTGCCTTGCAAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- ..................................................
EY908428       <-- ..................................................
EV535263       <-- ..................................................
EV566560       <-- ..................................................
EY921549       <-- ..................................................
EY931754       <-- TCCc..............................................
EV537421       <-- ..................................................
EY908914       <-- TCCTTTCCCTGGGTAGAGCCACCGTCAGCTTTGACGTTGCCTTGCAAGGT
EV537409       <-- TCCTTTCCCTGGGTAGAGCCACCGTCAGCTTTGACGTTGCCTTGCAAGGT
FD974032       <-- TCCTTTCCCTGGGTAGAGCCACCGTCAGCTTTGACGTTGCCTTGCAAGGT
EY930082       <-- TCCTTTCCCTGGGTAGAGCCACCGTCAGCTTTGACGTTGCCTTGCAAGGT
FD541375       <-- TCCTTTCCCTGGGTAGAGCCACCGTCAGCTTTGACGTTGCCTTGCAAGGT
FD973337       <-- TCCTTTCCCTGGGTAGAGCCACCGTCAGCTTTGACGTTGCCTTGCAAGGT
FD543610       <-- TCCTTTCCCTGGGTAGAGCCACCGTCAGCTTTGACGTTGCCTTGCAAGGT
EV571663       --> ..................................................
EY904124       --> ..................................................
EY917674       --> ..................................................
FD567160       --> ..................................................
EW720441       --> ..................................................
FY428422       --> ..................................................
EV541642       --> ..................................................
EY927631       --> ..................................................
FD969598       --> ..................................................

               1151   -   1201
UN21840        --> GAACTCGATTGGAGATTTGCATGGACCAGTCATAGCGATCTCACCAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- ..................................................
EY908428       <-- ..................................................
EV535263       <-- ..................................................
EV566560       <-- ..................................................
EY921549       <-- ..................................................
EY931754       <-- ..................................................
EV537421       <-- ..................................................
EY908914       <-- GAACTCGATTGGAGATTTGCATGGACCAGTCATAGCGATCTCACCAAGCT
EV537409       <-- GAACTCGATTGGAGATTTGCATGGACCAGTCATAGCGATCTCACCAAGCT
FD974032       <-- GAACTCGATTGGAGATTTGCATGGACCAGTCATAGCGATCTCACCAAGCT
EY930082       <-- GAACTCGATTGGAGATTTGCATGGACCAGTCATAGCGATCTCACCAAGCT
FD541375       <-- GAACTCGATTGGAGATTTGCATGGACCAGTCATAGCGATCTCACCAAGCT
FD973337       <-- GAACTCGATTGGAGATTTGCATGGACCAGTCATAGCGATCTCACCAAGCT
FD543610       <-- GAACTCGATTGGAGATTTGCATGGACCAGTCATAGCGATCTCACCAAGCT
EV571663       --> ..................................................
EY904124       --> ..................................................
EY917674       --> ..................................................
FD567160       --> ..................................................
EW720441       --> ..................................................
FY428422       --> ..................................................
EV541642       --> ..................................................
EY927631       --> ..................................................
FD969598       --> ..................................................

               1201   -   1251
UN21840        --> TGAAGTCACCTTTTGGGATCAGCACCTGGCTTGGTGCCGGAGCTTGGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- ..................................................
EY908428       <-- ..................................................
EV535263       <-- ..................................................
EV566560       <-- ..................................................
EY921549       <-- ..................................................
EY931754       <-- ..................................................
EV537421       <-- ..................................................
EY908914       <-- TGAAGTCACCTTTTGGGATCAGCACCTGGCTTGGTGCCGGAGCTTGGCAT
EV537409       <-- TGAAGTCACCTTTTGGGATCAGCACCAGGCTTGGTGCCGGAGCTTGACAT
FD974032       <-- TGAAGTCACCTTTTGGGATCAGCACCTGGCTTGGTGCCGGAGCTTGACAT
EY930082       <-- TGAAGTCACCTTTTGGGATCAGCACCTGGCTTGGTGCCGGAGCTTGGCAT
FD541375       <-- TGAAGTCACCTTTTGGGATCAGCACCTGGCTTGGTGCCGGAGCTTGACAT
FD973337       <-- TGAAGTCACCTTTTGGGATCAGCACCTGGCTTGGTGCCGGAGCTTGGCAT
FD543610       <-- TGAAGTCACCTTTTGGGATCAGCACCTGGCTTGGTGCCGGAGCTTGGCAT
EV571663       --> ..................................................
EY904124       --> ..................................................
EY917674       --> ..................................................
FD567160       --> ..................................................
EW720441       --> ..................................................
FY428422       --> ..................................................
EV541642       --> ..................................................
EY927631       --> ..................................................
FD969598       --> ..................................................

               1251   -   1301
UN21840        --> GCCGATGTGAATGCTTTAAGAACTGCCGCGGTAATATCAGAATTTGGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- ..................................................
EY908428       <-- ..................................................
EV535263       <-- ..................................................
EV566560       <-- ..................................................
EY921549       <-- ..................................................
EY931754       <-- ..................................................
EV537421       <-- ..................................................
EY908914       <-- GCCGATGTGAATGCTTTAAGAACTGCCGCGGTAATATCAGAATTTGGAGG
EV537409       <-- GCCGATGTGAATGCTTTAAGAACTGCCGCGGTGATATCAGAATTTGGAGG
FD974032       <-- GCCGATGTGAATGCTTTAAGAACTGCCGCGGTGATATCAGAATTTGGAGG
EY930082       <-- GCCGATGTGAATGCTTTAAGAACTGCCGCGGTAATATCAGAATTTGGAGG
FD541375       <-- GCCGATGTGAATGCTTTAAGAACTGCCGCGGTGATATCAGAATTTGGAGG
FD973337       <-- GCCGATGTGAATGCTTTAAGAACTGCCGCGGTAATATCAGAATTTGGAGG
FD543610       <-- GCCGATGTGAATGCTTTAAGAACTGCCGCGGTAATATCAGAATTTGGAGG
EV571663       --> ..................................................
EY904124       --> ..................................................
EY917674       --> ..................................................
FD567160       --> ..................................................
EW720441       --> ..................................................
FY428422       --> ..................................................
EV541642       --> ..................................................
EY927631       --> ..................................................
FD969598       --> ..................................................

               1301   -   1351
UN21840        --> ACCACCAGCGTTAAACACCTCGGCATTGGCTGAATATCCTAGCAAACATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- ..................................................
EY908428       <-- ..................................................
EV535263       <-- ..................................................
EV566560       <-- ..................................................
EY921549       <-- ..................................................
EY931754       <-- ..................................................
EV537421       <-- ..................................................
EY908914       <-- ACCACCAGCGTTAAACACCTCGGCATTGGCTGAATATCCTAGCAAACATA
EV537409       <-- ACCACCAGCGTTGAACACCTCAGCATTGGTTGAATATCTTAGCAAACATA
FD974032       <-- ACCACCAGCGTTGAACACCTCAGCATTGGCTGAATATCTTAGCAAACATA
EY930082       <-- ACCACCAGCGTTAAACACCTCGGCATTGGCTGAATATCCTAGCAAACATA
FD541375       <-- ACCACCAGCGTTGAACACCTCAGCATTGGCTGAATATCTTAGCAAACATA
FD973337       <-- ACCACCAGCGTTAAACACCTCGGCATTGGCTGAATATCCTAGCAAACATA
FD543610       <-- ACCACCAGCGTTAAACACCTCGGCATTGGCTGAATATCCTAGCAAACATA
EV571663       --> ..................................................
EY904124       --> ..................................................
EY917674       --> ..................................................
FD567160       --> ..................................................
EW720441       --> ..................................................
FY428422       --> ..................................................
EV541642       --> ..................................................
EY927631       --> ..................................................
FD969598       --> ..................................................

               1351   -   1401
UN21840        --> GAACCAAAATTGTATATATTCCTAAATATGAACCCATTTTTATTTATTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- ..................................................
EY908428       <-- ..................................................
EV535263       <-- ..................................................
EV566560       <-- ..................................................
EY921549       <-- ..................................................
EY931754       <-- ..................................................
EV537421       <-- ..................................................
EY908914       <-- GAACCAAAATTGTATATATTCCTAAATATGAACCCATTTTTATTTATTTA
EV537409       <-- GAACCAAAATTGTATAAATTCCTAAATATGAACCCATTTTTATTTATTTA
FD974032       <-- GAACCAAAATTGTATAAATTCCTAAATATGAACCCATTTTTATCTATTTA
EY930082       <-- GAACCAAAATTGTATATATTCCTAAATATGAACCCATTTTTATTTATTTA
FD541375       <-- GAACCAAAATTGTATAAATTCCTAAATATGAACCCATTTTTATTTATTTA
FD973337       <-- GAACCAAAATTGTATATATTCCTAAATATGAACCCATTTTTATTTATTTA
FD543610       <-- GAACCAAAATTGTATATATTCCTAAATATGAACCCATTTTTATTTATTTA
EV571663       --> ..................................................
EY904124       --> ..................................................
EY917674       --> ..................................................
FD567160       --> ..................................................
EW720441       --> ..................................................
FY428422       --> ..................................................
EV541642       --> ..................................................
EY927631       --> ..................................................
FD969598       --> ..................................................

               1401   -   1451
UN21840        --> TTTATTTTATTTT-TTATT-GTTTTTTT-TTATTGTT.........
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716162       <-- ..............................................
EY908428       <-- ..............................................
EV535263       <-- ..............................................
EV566560       <-- ..............................................
EY921549       <-- ..............................................
EY931754       <-- ..............................................
EV537421       <-- ..............................................
EY908914       <-- TTTATTTTATTTT-TTATTTGTTTTctcc.................
EV537409       <-- TTTATTTTATTTT-TTATT-GTTTTTTT-TTATTGTTgttttctcc
FD974032       <-- TTTATTTTATTTT-TTATT-GTTTTTTT-T-ATTGTTccc......
EY930082       <-- TTTATTTTATTTTATTTTT-GTTTTctcc.................
FD541375       <-- TTTATTTTATTTT-TTATT-GTTTTTTTATTGTTGTTttctcc...
FD973337       <-- TTTATTTTATTTTATTTTT-GTTTTctcc.................
FD543610       <-- TTTATTTTATTTT-TTATTTGTTTTctcc.................
EV571663       --> ..............................................
EY904124       --> ..............................................
EY917674       --> ..............................................
FD567160       --> ..............................................
EW720441       --> ..............................................
FY428422       --> ..............................................
EV541642       --> ..............................................
EY927631       --> ..............................................
FD969598       --> ..............................................