1      -     51
UN21862        --> GGAAATTAGAATCCTCTCAAGATCTCTCTCTCTCTCTCTCGCGATTGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD537674       <-- ..................................................
FD536980       <-- ..................................................
EX895947       --> GGAAATTAGAATCCTCTCAAGATCTCTCTCTCTCTCTCTCGCGATTGAGG
FY444395       --> ........................................GCGATTGAGG
FY445278       --> ..................................................
EY907146       --> ..................................................

               51     -    101
UN21862        --> TGTGTGGTAGCGAGTGATCATCATCATCATCATCATCATCATCATCATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD537674       <-- ..................................................
FD536980       <-- ..................................................
EX895947       --> TGTGTGGTAGCGAGTGATCATCATCATCATCATCATCATCATCAT---GT
FY444395       --> TGTGTGGTAGCGAGTGATCATCATCATCATCATCATCATCATCATCATGT
FY445278       --> ...........GAGTGATCATCATCATCATCATCATCATCATCATCATGT
EY907146       --> ..................................................

               101    -    151
UN21862        --> TCGTGATTGATTGGTTCTATGGCGTTCTCGCTTCGCTAGGTTTATGGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD537674       <-- ..................................................
FD536980       <-- ..................................................
EX895947       --> TCGTGATTGATTGGTTCTATGGCGTTCTCGCTTCGCTAGGTTTATGGCAG
FY444395       --> TCGTGATTGATTGGTTCTATGGCGTTCTCGCTTCGCTAGGTTTATGGCAG
FY445278       --> TCGTGATTGATTGGTTCTATGGCGTTCTCGCTTCGCTAGGTTTATGGCAG
EY907146       --> ..................................................

               151    -    201
UN21862        --> AAAGAGGCTAAGATCTTGTTCCTCGGGCTCGATAACGCCGGCAAAACCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD537674       <-- ..................................................
FD536980       <-- ..................................................
EX895947       --> AAAGAGGCTAAGATCTTGTTCCTCGGGCTCGATAACGCCGGCAAAACCAC
FY444395       --> AAAGAGGCTAAGATCTTGTTCCTCGGGCTCGATAACGCCGGCAAAACCAC
FY445278       --> AAAGAGGCTAAGATCTTGTTCCTCGGGCTCGATAACGCCGGCAAAACCAC
EY907146       --> ..................................................

               201    -    251
UN21862        --> CTTGCTTCACATGCTCAAAGACGAGAGGTTGGTGCAGCACCAGCCGACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD537674       <-- ..........................GGTTGGTGCAGCACCAGCCGACGC
FD536980       <-- ..................................................
EX895947       --> CTTGCTTCACATGCTCAAAGACGAGAGGTTGGTGCAGCACCAGCCGACGC
FY444395       --> CTTGCTTCACATGCTCAAAGACGAGAGGTTGGTGCAGCACCAGCCGACGC
FY445278       --> CTTGCTTCACATGCTCAAAGACGAGAGGTTGGTGCAGCACCAGCCGACGC
EY907146       --> ..................................................

               251    -    301
UN21862        --> AGCATCCAACGTCTGAAGAACTGAGCATCGGTAAAATCAAGTTCAAGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD537674       <-- AGCATCCAACGTCTGAAGAACTGAGCATTGGCAAAATCAAGTTCAAGGCT
FD536980       <-- ......................GAGCATTGGCAAAATCAAGTTCAAGGCT
EX895947       --> AGCATCCAACGTCTGAAGAACTGAGCATCGGTAAAATCAAGTTCAAGGCT
FY444395       --> AGCATCCAACGTCTGAAGAACTGAGCATCGGTAAAATCAAGTTCAAGGCT
FY445278       --> AGCATCCAACGTCTGAAGAACTGAGCATCGGTAAAATCAAGTTCAAGGCT
EY907146       --> ..................................................

               301    -    351
UN21862        --> TTTGATTTGGGCGGTCATCAGATTGCTCGCAGGGTCTGGAAGGATTACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD537674       <-- TTTGATTTGGGCGGTCATCAGATTGCTCGCAGGGTCTGGAAGGATTACTA
FD536980       <-- TTTGATTTGGGCGGTCATCAGATTGCTCGCAGGGTCTGGAAGGATTACTA
EX895947       --> TTTGATTTGGGCGGTCATCAGATTGCTCGCAGGGTCTGGAAGGATTACTA
FY444395       --> TTTGATTTGGGCGGTCATCAGATTGCTCGCAGGGTCTGGAAGGATTACTA
FY445278       --> TTTGATTTGGGCGGTCATCAGATTGCTCGCAGGGTCTGGAAGGATTACTA
EY907146       --> ..................................................

               351    -    401
UN21862        --> CGCTAAGGTGGATGCTGTGGTCTACCTAGTGGATGCTTACGACAAGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD537674       <-- CGCTAAGGTGGATGCTGTGGTCTACCTAGTGGATGCTTACGACAAGGAGC
FD536980       <-- CGCTAAGGTGGATGCTGTGGTCTACCTAGTGGATGCTTACGACAAGGAGC
EX895947       --> CGCTAAGGTGGATGCTGTGGTCTACCTAGTGGATGCTTACGACAAGGAGC
FY444395       --> CGCTAAGGTGGATGCTGTGGTCTACCTAGTGGATGCTTACGACAAGGAGC
FY445278       --> CGCTAAGGTGGATGCTGTGGTCTACCTAGTGGATGCTTACGACAAGGAGC
EY907146       --> ..................................................

               401    -    451
UN21862        --> GATTTGCAGAATCGAAAAAGGAACTGGACGCGCTTCTCTCAGACGAATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD537674       <-- GATTTGCAGAATCGAAAAAGGAACTGGACGCGCTTCTCTCAGACGAATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536980       <-- GATTTGCAGAATCGAAAAAGGAACTGGACGCGCTTCTCTCAGACGAATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX895947       --> GATTTGCAGAATCGAAAAAGGAACTGGACGCACTTCTCTCAGACGAATCT  Raphanus sativus cv Early Scarlet Globe
FY444395       --> GATTTGCAGAATCGAAAAAGGAACTGGACGCACTTCTCTCAGACGAATCT  Raphanus sativus cv GSK3-1
FY445278       --> GATTTGCAGAATCGAAAAAGGAACTGGACGCACTTCTCTCAGACGAATCT  Raphanus sativus cv GSK3-1
EY907146       --> .........AATCGAAAAAGGAACTGGACGCGCTTCTCTCAGACGAATCT  Raphanus raphanistrum subsp. raphanistrum (MS)

               451    -    501
UN21862        --> CTAGCCACCGTTCCGTTCCTCATCCTAGGAAACAAGATTGACATACCATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD537674       <-- CTAGCCACCGTTCCCTTCCTCATCCTAGGAAACAAGATAGACATACCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536980       <-- CTAGCCACCGTTCCCTTCCTCATCCTAGGAAACAAGATAGACATACCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX895947       --> CTAGCCACCGTTCCGTTCCTCATCCTAGGAAACAAGATTGACATACCATA  Raphanus sativus cv Early Scarlet Globe
FY444395       --> CTAGCCACCGTTCCGTTCCTCATCCTAGGAAACAAGATTGACATACCATA  Raphanus sativus cv GSK3-1
FY445278       --> CTAGCCACCGTTCCGTTCCTCATCCTAGGAAACAAGATTGACATACCATA  Raphanus sativus cv GSK3-1
EY907146       --> CTAGCCACCGTTCCGTTCCTCATCCTAGGAAACAAGATAGACATACCATA  Raphanus raphanistrum subsp. raphanistrum (MS)

               501    -    551
UN21862        --> CGCTGCATCAGAGGACGAGCTCCGTTACCATCTCGGCCTCTCCAACTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD537674       <-- CGCTGCATCAGAGGACGAGCTCCGTTACCATCTCGGCCTCTCCAACTTCA
FD536980       <-- CGCTGCATCAGAGGACGAGCTCCGTTACCATCTCGGCCTCTCCAACTTCA
EX895947       --> CGCTGCATCAGAGGACGAGCTCCGTTACCATCTCGGCCTCTCCAACTTCA
FY444395       --> CGCTGCATCAGAGGACGAGCTCCGTTACCATCTCGGCCTCTCCAACTTCA
FY445278       --> CGCTGCATCAGAGGACGAGCTCCGTTACCATCTCGGCCTCTCCAACTTCA
EY907146       --> CGCTGCATCAGAGGACGAGCTCCGTTACCATCTCGGCCTCTCCAACTTCA

               551    -    601
UN21862        --> CCACGGGAAAGGGTAAAGTGAATCTAGTGGACTCCAACGTAAGACCATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD537674       <-- CCACGGGAAAGGGTAAAGTGAATCTAGTCGACTCCAACGTAAGACCATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536980       <-- CCACGGGAAAGGGTAAAGTGAATCTAGTCGACTCCAACGTAAGACCATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX895947       --> CCACGGGAAAGGGTAAAGTGAACCTAGTGGACTCCAACGTAAGACCATTG  Raphanus sativus cv Early Scarlet Globe
FY444395       --> CCACGGGAAAGGGTAAAGTGAACCTAGTGGACTCCAACGTAAGACCATTG  Raphanus sativus cv GSK3-1
FY445278       --> CCACGGGAAAGGGTAAAGTGAACCTAGTGGACTCCAACGTAAGACCATTG  Raphanus sativus cv GSK3-1
EY907146       --> CCACGGGAAAGGGTAAAGTGAATCTAGTCGACTCCAACGTAAGACCATTG  Raphanus raphanistrum subsp. raphanistrum (MS)

               601    -    651
UN21862        --> GAGGTTTTCATGTGCAGCATCGTCAGGAAGATGGGTTATGGCGAAGGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD537674       <-- GAGGTTTTCATGTGCAGCATCGTCAGGAAGATGGGTTATGGCGAAGGCTT
FD536980       <-- GAGGTTTTCATGTGCAGCATCGTCGTGAAGATGGGTTATGGCGAAGGCTT
EX895947       --> GAGGTTTTCATGTGCAGCATCGTCAGGAAGATGGGTTATGGCGAAG-CTT
FY444395       --> GAGGTTTTCATGTGCAGCATCGTCAGGAAGATGGGTTATGGCGAAGGCTT
FY445278       --> GAGGTTTTCATGTGCAGCATCGTCAGGAAGATGGGTTATGGCGAAGGCTT
EY907146       --> GAGGTTTTCATGTGCAGCATCGTCAGGAAGATGGGTTACGGCGAAGGCTT

               651    -    701
UN21862        --> CAAATGGCTCTCTCAGTACATCAAGTAACTACTAAGCCGCCAAGTCTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD537674       <-- CAAATGGCTCTCTCAGTACATCAAGTAACTATTAAG---CCAAGTCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536980       <-- CAAATGGCTCTCTCAGTACATCAAGTAACTACTAAG---CCAAGTCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX895947       --> CAAATGGCTCTCTCAGTACATCAAGTAACTACTAAGCCGCCAAGACTCCA  Raphanus sativus cv Early Scarlet Globe
FY444395       --> CAAATGGCTCTCTCAGTACATCAAGTAACTACTAAGCCGCCAAGACTCCA  Raphanus sativus cv GSK3-1
FY445278       --> CAAATGGCTCTCTCAGTACATCAAGTAACTACTAAGCCGCCAAGACTCCA  Raphanus sativus cv GSK3-1
EY907146       --> CAAATGGCTCTCTCAGTACATCAAGTAACTACTAAGCC---AAGTCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)

               701    -    751
UN21862        --> ACAACCACAT---GGCCTTGTTATTGCTAAACCATAAGTTCCCAGCTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD537674       <-- ACAACCACATCATGGCCTTGTTATTGCTAAACCATAAGTTCCCAGCTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536980       <-- ACAACCACATCATGGCCTTGTTATTGCTAAACCATAAGTTCCCAGCTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX895947       --> ACAACCACAT---GGCCTTGTTATTGCTAAACCATAAGTTCCCAGCTTTG  Raphanus sativus cv Early Scarlet Globe
FY444395       --> ACAACCACAT---GGCCTTGTTATTGCTAAACCATAAGTTCCCAGCTTTG  Raphanus sativus cv GSK3-1
FY445278       --> ACAACCACAT---GGCCTTGTTATTGCTAAACCATAAGTTCCCAGCTTTG  Raphanus sativus cv GSK3-1
EY907146       --> ACAACCACATCATGGCCTTGTTATTGCTAAACCATAAGTTCCCAGCTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)

               751    -    801
UN21862        --> TCTCTCTTGTCTTGCTTTTTTCATGTTTTGTAAGAAATGTCGTGAAACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD537674       <-- TCTCTCTTGTCTTGCTTTTTTCATGTTTTGTAAGAAATGTCGTGAAACTT
FD536980       <-- TCTCTCTTGTCTTGCTTTTTTCATGTTTTGTAAGAAATGTCGTGAAACTT
EX895947       --> TCTCTCT-GTC-TGCTTTTT-CATGTTT-GTAAGAA-TGTCG........
FY444395       --> TCTCTCTTGTCTTGCTTTTTTCATGTTTTGTAAGAAATGTCGTGAAACTT
FY445278       --> TCTCTCTTGTCTTGCTTTTTTCATGTTTTGTAAGAAATGTCGTGAAACTT
EY907146       --> TCTCTCTTGTCTTGCTTTTTTCATGTTTTGTAAGAAATGTCGTGAAACTT

               801    -    851
UN21862        --> AGCTTCTCGTTGCTCTGGTTTGTTTCTTTGTAGTGATTTTTTTTTT-AAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD537674       <-- AGCTTCTCGTTGCTCTGGTTTGTTTCTTTGTAGTGATTTTTTTTT--AAA
FD536980       <-- AGCTTCTCGTTGCTCTGGTTTGTTTCTTTGTAGTGATTTTTTTTTT-AAA
EX895947       --> ..................................................
FY444395       --> AGCTTCTCGTTGCTCTGGTTTGTTTCTTTGTAGTGATTTTTTTTTT-AAA
FY445278       --> AGCTTCTCGTTGCTCTGGTTTGTTTCTTTGTAGTGATTTTTTTTTTTAAA
EY907146       --> AGCTTCTCGTTGCTCTGGTTTGTTTCTTTGTAGTGATTTTTTTTTTTAAA

               851    -    901
UN21862        --> TAACATTACATGTTTCGTAATTTATACTATTAAATAAGGTAAAAATGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD537674       <-- TAACATTACATGTTTCGT................................
FD536980       <-- TAACATTACATGTTTCGTAATTTATACTATTAAATAAGGTAAAAATGTTA
EX895947       --> ..................................................
FY444395       --> TAACATTACATGTTTCGTAA..............................
FY445278       --> TAACATTACATGTTTCGTAATTTATACTATTAAATAAGGTAAAAATGTTT
EY907146       --> TAACATTACATGTTTCGT................................

               901    -    951
UN21862        --> GGTTTT
                   ~~~~~~
FD537674       <-- ......
FD536980       <-- GGTTTT
EX895947       --> ......
FY444395       --> ......
FY445278       --> GGTTTT
EY907146       --> ......