1      -     51
UN21923        --> GGATGCTCCAATCTCTCTCTCTTCTCTTCTTCCTCTTTGCTAACAAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- ..................................................
FD959336       <-- ..................................................
EV573943       <-- ..................................................
FD538532       <-- ..................................................
FD538289       <-- ..................................................
FD966573       <-- ..................................................
FD977341       <-- ..................................................
FD542151       --> GGATGCTCCAATCTCTCTCTCTTCTCTTCTTCCTCTTTGCTAACAAAGCA
FD970139       --> GGATGCTCCAATCTCTCTCTCTTCTCTTCTTCCTCTTTGCTAACAAAGCA
EX756225       --> ........ggATCTCTCTCCACTCTCTTCTTCCTCTTTGCTAACAAAGCA
FD981614       --> ........ggATCTCTCTCGACTCTCTTCTTCCTCTTTGCTAACAAACCA
FD937881       --> .................gggacTCTCTTCTTCCTCTTTGCTAACAAAGCA
FD563017       --> .........ggtctctctcgaccCTCTTCTTCCTCTTTGCTAACAAAGCA
FD542462       --> ..................................................
FD989759       --> ..................................................
EY950169       --> ..................................................
EW724710       --> ..................................................
EV569386       --> ..................................................
EX749313       --> ..................................................

               51     -    101
UN21923        --> TCAT-CCTTTTTTGCTGAAGACGGAGAAGCTCCATGACGAAGCAGCACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- ......................GGAGAAGCTCCATGACGAAGCAGCACGC
FD959336       <-- ..................................................
EV573943       <-- ..................................................
FD538532       <-- ..................................................
FD538289       <-- ..................................................
FD966573       <-- ..................................................
FD977341       <-- ..................................................
FD542151       --> TCAT-CCCTTTTGGCTGAAGACGGAGAAGCTCCATGACGAAGCAGCACGC
FD970139       --> TCAT-CCCTTTTGGCTGAAGACGGAGAAGCTCCATGACGAAGCAGCACGC
EX756225       --> TCATTCCTTTTTTGCTGAAGACGGAGAAGCTCCATGACGAAGCAGCACGC
FD981614       --> TCATTCCTTTTTTGCTGAAGACGGAGAAGCTCCATGACGAAGCAGCACGC
FD937881       --> TC---CCTTTTTTGCTGAAGACGGAGAAGCTCCATGACGAAGCAGCACGC
FD563017       --> TC---CCTTTTTTGCTGAAGACGGAGAAGCTCCATGACGAAGCAGCACGC
FD542462       --> .......TTTTTTGCTGAAGACGGAGAAGCTCCATGACGAAGCAGCACGC
FD989759       --> .......TTTTTTGCTGAAGACGGAGAAGCTCCATGAAGAAGCAGCACGC
EY950169       --> ........TTTTTGCTGAAGACGGAGAAGCTCTATGACGAAGCAGCACGC
EW724710       --> ......................GGAGAAGCTCCATGACGAAGCAGCACGC
EV569386       --> ..............................TCCATGACGAAGCAGCACGC
EX749313       --> ..................................................

               101    -    151
UN21923        --> GAACTGGTCTCCTTACGATAACAACGGAGGAACATGTGTGGCCATAGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- GAACTGGTCTCCTTACGATAACAACGGAGGAACATGTGTGGCCATAGCTG  Raphanus sativus cv Early Scarlet Globe
FD959336       <-- ...............CGATAACAACGGAGGAACATGTGTGGCCATCGCTG  Raphanus raphanistrum subsp. maritimus
EV573943       <-- ................GATAACAACGGAGGAACATGTGTGGCCATCGCTG  Raphanus raphanistrum subsp. landra
FD538532       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538289       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966573       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977341       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542151       --> GAACTGGTCTCCTTACGATAACAATGGAGGAACATGTGTGGCCATAGCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970139       --> GAACTGGTCTCCTTACGATAACAATGGAGGAACATGTGTGGCCATAGCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756225       --> GAACTGGTCTCCTTACGATAACAATGGAGGAACATGTGTGGCCATAGCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD981614       --> GAACTGGTCTCCTTACGATAACAATGGAGGAACATGTGTGGCCATAGCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937881       --> GAACTGGTCTCCTCACGATAACAACGGAGGAACATGTGTGGCCATAGCTG  Raphanus sativus var. oleiformis
FD563017       --> GAACTGGTCTCCTTACGATAACAACGGAGGAACATGTGTGGCCATAGCTG  Raphanus sativus var. oleiformis
FD542462       --> GAACTGGTCTCCTTACGATAACAATGGAGGAACATGTGTGGCCATAGCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989759       --> GAACTGGTCTCCTTACGATAACAACGGAGGAACATGTGTGGCCATAGCTG  Raphanus raphanistrum subsp. landra
EY950169       --> GAACTGGTCTCCTTACGACAACAATGGAGGAACATGTGTGGCCATAGCTG  Raphanus sativus cv Rat-Tail Radish #3870
EW724710       --> GAACTGGTCTCCTTACGATAACAACGGAGGAACATGTGTGGCCATAGCTG  Raphanus sativus cv Early Scarlet Globe
EV569386       --> GAACTGGTCTCCTTACGATAACAACGGAGGAACATGTGTGGCCATCGCTG  Raphanus raphanistrum subsp. landra
EX749313       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               151    -    201
UN21923        --> GATCGGATTACTGCGTTATCGCCGCCGATACTCGGATGTCTACCGGTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- GATCGGATTACTGCGTTATCGCCGCCGATACTCGGATGTCTACCGGTTAC  Raphanus sativus cv Early Scarlet Globe
FD959336       <-- GATCGGATTACTGCGTTATCGCCGCCGATACTCGGATGTCTACCGGTTAC  Raphanus raphanistrum subsp. maritimus
EV573943       <-- GATCGGATTACTGCGTTATCGCCGCCGATACTCGGATGTCTACCGGTTAC  Raphanus raphanistrum subsp. landra
FD538532       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538289       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966573       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977341       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542151       --> GATCGGATTACTGCGTTATCGCCGCCGATACTCGTATGTCTACCGGTTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970139       --> GATCGGATTACTGCGTTATCGCCGCCGATACTCGTATGTCTACCGGTTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756225       --> GATCGGATTACTGCGTTATCGCCGCCGATACTCGTATGTCTACCGGTTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD981614       --> GATCGGATTACTGCGTTATCGCCGCCGATACTCGTATGTCTACCGGTTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937881       --> GATCGGATTACTGCGTTATCGCCGCCGATACTCGGATGTCTACCGGTTAC  Raphanus sativus var. oleiformis
FD563017       --> GATCGGATTACTGCGTTATCGCCGCCGATACTCGGATGTCTACCGGTTAC  Raphanus sativus var. oleiformis
FD542462       --> GATCGGATTACTGCGTTATCGCCGCCGATACTCGTATGTCTACCGGCTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989759       --> GATCGGATTACTGCGTTATCGCCGCCGATACTCGGATGTCTACCGGTTAC  Raphanus raphanistrum subsp. landra
EY950169       --> GATCGGATTACTGCGTTATCGCCGCCGATACTCGGATGTCTACCGGTTAC  Raphanus sativus cv Rat-Tail Radish #3870
EW724710       --> GATCGGATTACTGCGTTATCGCCGCCGATACTCGGATGTCTACCGGTTAC  Raphanus sativus cv Early Scarlet Globe
EV569386       --> GATCGGATTACTGCGTTATCGCCGCCGATACTCGGATGTCTACCGGTTAC  Raphanus raphanistrum subsp. landra
EX749313       --> ......................................gCTACCGGTTAC  Raphanus raphanistrum subsp. maritimus

               201    -    251
UN21923        --> AGTATTCTCACTCGCGATTACTCCAAAATCCATAAACTAGCAGACAAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- AGTATTCTCACTCGCGATTACTCCAAAATCCATAAACTAGCAGACAAAGC
FD959336       <-- AGTATTCTCACTCGCGATTACTCCAAAATCCATAAACTAGCAGACAAAGC
EV573943       <-- AGTATTCTCACTCGCGATTACTCCAAAATCCATAAACTAGCAGACAAAGC
FD538532       <-- ..................................................
FD538289       <-- ..................................................
FD966573       <-- ..................................................
FD977341       <-- ..................................................
FD542151       --> AGTATTCTCACTCGCGATTACTCCAAAATCCATAAACTAGCAGACAAAGC
FD970139       --> AGTATTCTCACTCGCGATTACTCCAAAATCCATAAACTAGCAGACAAAGC
EX756225       --> AGTATTCTCACTCGCGATTACTCCAAAATCCATAAACTAGCAGACAAAGC
FD981614       --> AGTATTCTCACTCGCGATTACTCCAAAATCCATAAACTAGCAGACAAAGC
FD937881       --> GGTATTCTCACTCGCGATTACTCCAAAATCCATAAACTAGCAGACAAAGC
FD563017       --> AGTATTCTCACTCGCGATTACTCCAAAATCCATAAACTAGCAGACAAAGC
FD542462       --> AGTATTCTCACTCGCGATTACTCCAAAATCCATAAACTAGCAGACAAAGC
FD989759       --> AGTATTCTCACTCGCGATTACTCCAAAATCCATAAACTAGCAGACAAAGC
EY950169       --> AGTATTCTCACTCGCGATTACTCCAAAATCCATAAACTAGCAGACAAAGC
EW724710       --> AGTATTCTCACTCGCGATTACTCCAAAATCCATAAACTAGCAGACAAAGC
EV569386       --> AGTATTCTCACTCGCGATTACTCCAAAATCCATAAACTAGCAGACAAAGC
EX749313       --> AGTATTCTCACTCGCGATTACTCCAAAATCCATAAACTAGCAGACAAAGC

               251    -    301
UN21923        --> TGTGCTCTCTTCCTCTGGCTTTCAGGCTGATGTGAAAGCGTTGCAGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- TGTGCTCTCTTCCTCTGGCTTTCAGGCTGATGTGAAAGCGTTGCAGAAAG  Raphanus sativus cv Early Scarlet Globe
FD959336       <-- TGTGCTCTCTTCCTCTGGCTTTCAGGCTGATGTGAAAGCGTTGCAGAAAG  Raphanus raphanistrum subsp. maritimus
EV573943       <-- TGTGCTCTCTTCCTCCGGCTTTCAGGCTGATGTGAAAGCGTTGCAGAAAG  Raphanus raphanistrum subsp. landra
FD538532       <-- ...............................GTGAAAGCATTGCAGAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538289       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966573       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977341       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542151       --> TGTGCTCTCTTCCTCTAGCTTTCAGGCTGATGTGAAAGCATTGCAGAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970139       --> TGTGCTCTCTTCCTCTGGCTTTCAGGCTGATGTGAAAGCATTGCAGAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756225       --> TGTGCTCTCTTCCTCTGGCTTTCAGGCTGATGTGAAAGCATTGCAGAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD981614       --> TGTGCTCTCTTCCTCTGGCTTTCAGGCTGATGTGAAAGCATTGCAGAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937881       --> TGTGCTCTCTTCCTCTGGCTTTCAGGCTGATGTGAAAGCGTTGCAGAAAG  Raphanus sativus var. oleiformis
FD563017       --> TGTGCTCTCTTCCTCTGGCTTTCAGGCTGATGTGAAAGCGTTGCAGAAAG  Raphanus sativus var. oleiformis
FD542462       --> TGTGCTCTCTTCCTCTGGCTTTCAGGCTGATGTGAAAGCATTGCAGAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989759       --> TGTGCTCTCTTCCTCTGGCTTTCAGGCTGATGTGAAAGCGTTGCAGAAAG  Raphanus raphanistrum subsp. landra
EY950169       --> TGTACTCTCTTCCTCTGGCTTTCAGGCTGATGTGAAAGCGCTGCAGAAAG  Raphanus sativus cv Rat-Tail Radish #3870
EW724710       --> TGTGCTCTCTTCCTCTGGCTTTCAGGCTGATGTGAAAGCGTTGCAGAAAG  Raphanus sativus cv Early Scarlet Globe
EV569386       --> TGTGCTCTCTTCCTCCGGCTTTCAGGCTGATGTGAAAGCGTTGCAGAAAG  Raphanus raphanistrum subsp. landra
EX749313       --> TGTGCTCTCTTCCTCTGGCTTTCAGGCTGATGTGAAAGCGTTGCAGAAAG  Raphanus raphanistrum subsp. maritimus

               301    -    351
UN21923        --> TTTTGAAATCAAGGCACTTGGTTTATCAGCATCAGCATAACAAGCAGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- TTTTGAAATCAAGGCACTTGGTTTATCAGCATCAGCATAACAAGCAGATG
FD959336       <-- TTTTGAAATCAAGGCACTTGGTTTATCAGCATCAGCATAACAAGCAGATG
EV573943       <-- TTTTGAAATCAAGGCACTTGGTTTATCAGCATCAGCATAACAAGCAGATG
FD538532       <-- TTTTGAAATCAAGGCACTTGGTTTATCAGCATCAGCATAACAAGCAGATG
FD538289       <-- ...........................................GCAGATG
FD966573       <-- ..................................................
FD977341       <-- ..................................................
FD542151       --> TTTTGAAATCAAGGCACTTGGTTTATCAGCATCAGCATAACAAGCAGATG
FD970139       --> TTTTGAAATCAAGGCACTTGGTTTATCAGCATCAGCATAACAAGCAGATG
EX756225       --> TTTTGAAATCAAGGCACTTGGTTTATCAGCATCAGCATAACAAGCAGATG
FD981614       --> TTTTGAAATCAAGGCACTTGGTTTATCAGCATCAGCATAACAAGCAGATG
FD937881       --> TTTTGAAATCAAGGCACTTGGTTTATCAGCATCAGCATAACAAGCAGATG
FD563017       --> TTTTGAAATCAAGGCACTTGGTTTATCAGCATCAGCATAACAAGCAGATG
FD542462       --> TTTTGAAATCAAGGCACTTGGTTTATCAGCATCAGCATAACAAGCAGATG
FD989759       --> TTTTGAAATCAAGGCACTTGGTTTATCAGCATCAGCATAACAAGCAGATG
EY950169       --> TTTTGAAATCAAGGCACTTGGTTTATCAGCATCAGCATAACAAGCAGATG
EW724710       --> TTTTGAAATCAAGGCACTTGGTTTATCAGCATCAGCATAACAAGCAGATG
EV569386       --> TTTTGAAATCAAGGCACTTGGTTTATCAGCATCAGCATAACAAGCAGATG
EX749313       --> TTTTGAAATCAAGGCACTTGGTTTATCAGCATCAGCATAACAAGCAGATG

               351    -    401
UN21923        --> AGCTGTCCTGCGATGGCTCAGCTTCTCTCCAACACGCTTTACTTCAAGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- AGCTGTCCTGCGATGGCTCAGCTTCTTTCCAACACGCTTTACTTTAAGCG  Raphanus sativus cv Early Scarlet Globe
FD959336       <-- AGCTGTCCTGCGATGGCTCAGCTTCTTTCCAACACGCTTTACTTCAAGCG  Raphanus raphanistrum subsp. maritimus
EV573943       <-- AGCTGTCCTGCGATGGCTCAGCTTCTTTCCAACACGCTTTACTTCAAGCG  Raphanus raphanistrum subsp. landra
FD538532       <-- AGCTGTCCTGCGATGGCTCAGCTTCTCTCTAACACGCTTTACTTCAAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538289       <-- AGCTGTCCTGCGATTGCTCAGCTTCTCTCTAACACGCTTTACTTCAAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966573       <-- .......CTGCGATGGCTCAGCTTCTCTCTAACACGCTTTACTTCAAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977341       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542151       --> AGCTGTCCTGCGATTGCTCAGCTTCTCTCTAACACGCTTTACTTCAAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970139       --> AGCTGTCCTGCGATGGCTCAGCTTCTCTCTAACACGCTTTACTTCAAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756225       --> AGCTGTCCTGCGATGGCTCAGCTTCTCTCTAACACGCTTTACTTCAAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD981614       --> AGCTGTCCTGCGATGGCTCAGCTTCTCTCTAACACGCTTTACTTCAAGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937881       --> AGCTGTCCTGCGATGGCTCAGCTTCTCTCCAACACGCTTTACTTTAAGCG  Raphanus sativus var. oleiformis
FD563017       --> AGCTGTCCTGCGATGGCTCAGCTTCTCTCCAACACGCTTTACTTTAAGCG  Raphanus sativus var. oleiformis
FD542462       --> AGCTGTCCTGCGATGGCTCAGCTTCTCTCTAACACGCTTTACTTCAAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989759       --> AGCTGTCCTGCAATGGCTCAGCTTCTCTCCAACACGCTTTACTTTAAGCG  Raphanus raphanistrum subsp. landra
EY950169       --> AGCTGTCCTGCGATGGCTCAGCTTCTTTCCAACACGCTTTACTTCAAGCG  Raphanus sativus cv Rat-Tail Radish #3870
EW724710       --> AGCTGTCCTGCGATGGCTCAGCTTCTTTCCAACACGCTTTACTTTAAGCG  Raphanus sativus cv Early Scarlet Globe
EV569386       --> AGCTGTCCTGCGATGGCTCAGCTTCTTTCCAACACGCTTTACTTCAAGCG  Raphanus raphanistrum subsp. landra
EX749313       --> AGCTGTCCTGCGACGGCTCAGCTTCTTTCCAACACGCTTTACTTCAAGCG  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN21923        --> CTTTTTTCCTTACTATGCATTTAATGTTCTAGGAGGGCTTGACGAGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- CTTTTTTCCTTACTATGCATTTAATGTTCTAGGAGGGCTTGATGAGGAAG  Raphanus sativus cv Early Scarlet Globe
FD959336       <-- CTTTTTTCCTTACTATGCATTTAATGTTCTTGGAGGGCTTGACGAGGACG  Raphanus raphanistrum subsp. maritimus
EV573943       <-- CTTTTTTCCTTACTATGCATTTAATGTTCTTGGAGGGCTTGACGAGGACG  Raphanus raphanistrum subsp. landra
FD538532       <-- CTTTTTTCCTTACTATGCATTTAATGTTCTAGGAGGGCTTGACGAGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538289       <-- CTTTTTTCCTTACTATGCATTTAATGTTCTAGGAGGGCTTGACGAGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966573       <-- CTTTTTTCCTTACTATGCATTTAATGTTCTAGGAGGGCTTGACGAGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977341       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542151       --> CTTTTTTCCTTACTATGCATTTAATGTTCTAGGAGGGCTTGACGAGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970139       --> CTTTTTTCCTTACTATGCATTTAATGTTCTAGGAGGGCTTGACGAGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756225       --> CTTTTTTCCTTACTATGCATTTAATGTTCTAGGAGGGCTTGACGAGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD981614       --> CTTTTTTCCTTACTATGCATTTAATGTTCTAGGAGGGCTTGACGAGGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937881       --> CTTTTTTCCTTACTATGCATTTAATGTTCTTGGAGGGCTTGACGAGGACG  Raphanus sativus var. oleiformis
FD563017       --> CTTTTTTCCTTACTATGCATTTAATGTTCTTGGAGGGCTTGACGAGGACG  Raphanus sativus var. oleiformis
FD542462       --> CTTTTTTCCTTACTATGCATTTAATGTTCTAGGAGGGCTTGACGAGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989759       --> CTTTTTTCCTTACTATGCCTTTAATGTTCTTGGAGGGCTTGACGAGGAAG  Raphanus raphanistrum subsp. landra
EY950169       --> CTTTTTTCCTTACTATGCCTTTAATGTTCTTGGAGGGCTTGACGAGGACG  Raphanus sativus cv Rat-Tail Radish #3870
EW724710       --> CTTTTTTCCTTACTATGCATTTAATGTTCTAGGAGGGCTTGATGAGGAAG  Raphanus sativus cv Early Scarlet Globe
EV569386       --> CTTTTTTCCTTACTATGCATTTAATGTTCTTGGAGGGCTTGACGAGGACG  Raphanus raphanistrum subsp. landra
EX749313       --> CTTTTTTCCTTACTATGCATTTAATGTTCTTGGAGGGCTTGACGAGGACG  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN21923        --> GTAAAGGTTGCGTCTTTACTTATGATGCTGTTGGTTCGTATGAGAAGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- GAAAAGGGTGCGTCTTTACTTACGATGCTGTTGGTTCGTATGAGAAGGTT  Raphanus sativus cv Early Scarlet Globe
FD959336       <-- GTAAAGGATGCGTCTTCACCTACGATGCTGTTGGTTCGTATGAGAAGGTT  Raphanus raphanistrum subsp. maritimus
EV573943       <-- GTAAAGGATGCGTCTTCACCTACGATGCTGTTGGTTCGTATGAGAAGGTT  Raphanus raphanistrum subsp. landra
FD538532       <-- GTAAAGGTTGTGTCTTTACTTATGATGCTGTTGGTTCGTATGAGAAAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538289       <-- GTAAAGGTTGTGTCTCTACTTATGATGCTGTTGGTTCGTATGAGAAAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966573       <-- GTAAAGGTTGTGTCTTTACTTATGATGCTGTTGGTTCGTATGAGAAAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977341       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542151       --> GTAAAGGTTGTGTCTCTACTTATGATGCTGTTGGTTCGTATGAGAAAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970139       --> GTAAAGGTTGTGTCTTTACTTATGATGCTGTTGGTTCGTATGAGAAAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756225       --> GTAAAGGTTGTGTCTTTACTTATGATGCTGTTGGTTCGTATGAGAAAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD981614       --> GTAAAGGTTGTGTCTTTGCTTATGATGCTGTTGGTTCGTATGAGAAAGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937881       --> GTAAAGGATGCGTCTTTACTTACGATGCTGTTGGTTCGTATGAGAAGGTT  Raphanus sativus var. oleiformis
FD563017       --> GTAAAGGATGCGTCTTTACTTACGATGCTGTTGGTTCGTATGAGAAGGTT  Raphanus sativus var. oleiformis
FD542462       --> GTAAAGGTTGTGTCTTTACTTATGATGCTGTTGGTTCGTATGAGAAAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989759       --> GTAAAGGCTGCGTCTTTACTTATGATGCTGTTGGTTCGTATGAGAAGGTT  Raphanus raphanistrum subsp. landra
EY950169       --> GTAAAGGATGCGTCTTTACTTACGATGCTGTTGGTTCGTATGAGAAGGTT  Raphanus sativus cv Rat-Tail Radish #3870
EW724710       --> GAAAAGGGTGCGTCTTTACTTACGATGCTGTTGGTTCGTATGAGAAGGTT  Raphanus sativus cv Early Scarlet Globe
EV569386       --> GTAAAGGATGCGTCTTCACCTACGATGCTGTTGGTTCGTATGAGAAGGTT  Raphanus raphanistrum subsp. landra
EX749313       --> GTAAAGGATGCGTCTTCACCTACGATGCTGTTGGTTCGTATGAGAAGGTT  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN21923        --> GGATACAGTGCTCAAGGTTCTGGTTCCACTCTAATCATGCCTTTCCTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- GGATACAGTGCTCAAGGTTCTGGTTCCACTCTAATTATGCCTTTCCTTGA
FD959336       <-- GGATACAGTGCTCAAGGTTCTGGTTCCACTCTAATCATGCCTTTCCTTGA
EV573943       <-- GGATACAGTGCTCAAGATTCTGGTTCCACTCTAATCATGCCTTTCCTTGA
FD538532       <-- GGATACAGTGCTCAAGGCTCTGGTTCCACTCTAATCATGCCTTTCCTTGA
FD538289       <-- GGATACAGTGCTCAAGGTTCTGGTTCCACTCTAATCATGCCTTTCCTTGA
FD966573       <-- GGATACAGTGCTCAAGGTTCTGGTTCCACTCTAATCATGCCTTTCCTTGA
FD977341       <-- ..................................................
FD542151       --> GGATACAGTGCTC.....................................
FD970139       --> GGATACAGTGCTCAAGGTTCTGGTTCCACTCTAATCATGCCTTTCCTTGA
EX756225       --> GGATACAGTGCTCAAGGTTCTGGTTCCACTCTAATCATGCCTTTCCTTGA
FD981614       --> GGATACAGTGCTCAAGGCTCTGGTTCCACTCTAATCATGCCTTTCCTTGA
FD937881       --> GGATACAGTGCTCAAGGTTCTGGTTCCACTCTAATCATGCCTTTCCTTGA
FD563017       --> GGATACAGTGCTCAAGGTTCTGGTTCCACTCTAATCATGCCTTTCCTTGA
FD542462       --> GGATACAGTGCTCAAGGCTCTGGTTCCACTCTAATCATGCCTTTCCTTGA
FD989759       --> GGATACAGTGCTCAAGGTTCTGGTTCCACTCTAATCATGCCTTTCCTTGA
EY950169       --> GGATACAGTGCTCAAGGTTCTGGTTCCACTCTAATCATGCCTTTCCTTGA
EW724710       --> GGATACAGTGCTCAAGGTTCTGGTTCCACTCTAATTATGCCTTTCCTTGA
EV569386       --> GGATACAGTGCTCAAGATTCTGGTTCCACTCTAATCATGCCTTTCCTTGA
EX749313       --> GGATACAGTGCTCAAGGTTCTGGTTCCACTCTAATCATGCCTTTCCTTGA

               551    -    601
UN21923        --> CAATCAACTCAAGAGTCCCAGCCCACTTCTGCTCCCTGCACAGGATGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- CAATCAACTCAAGAGTCCCAGCCCACTTCTGCTACCCGCACAGGATGCTA  Raphanus sativus cv Early Scarlet Globe
FD959336       <-- CAATCAACTCAAGAGTCCCAGCCCACTTCTGCTCCCTGCACAGGATGCTA  Raphanus raphanistrum subsp. maritimus
EV573943       <-- CAATCAACTCAAGAGTCCCAGCCCACTTTTGCTCCCTGCACAGGATGCTA  Raphanus raphanistrum subsp. landra
FD538532       <-- CAATCAACTCAAGAGTCCCAGCCCTCTTCTGCTGCCTGCACAGGATGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538289       <-- CAATCAACTCAAGAGTCCCAGCCCTCTTCTGCTGCCTGCACAGGATGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966573       <-- CAATCAACTCAAGAGTCCCAGCCCTCTTCTGCTGCCTGCACAGGATGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977341       <-- ...........................................GATGCTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542151       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970139       --> CAATCAACTCAAGAGTCCCAGCCCTCTTCTGCTGCCTGCACAGGATGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756225       --> CAATCAACTCAAGAGTCCCAGCCCTCTTCTGCTGCCTGCACAGGATGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD981614       --> CAATCAACTCAAGAGTCCCAGCCCTCTTCTGCTGCCTGCACAGGATGCTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937881       --> CAATCAACTCAAGAGTCCCAGCCCACTTCTGCTCCCTGCACAGGATGCTA  Raphanus sativus var. oleiformis
FD563017       --> CAATCAACTCAAGAGTCCCAGCCCACTTCTGCTCCCTGCACAGGATGCTA  Raphanus sativus var. oleiformis
FD542462       --> CAATCAACTCAAGAGTCCCAGCCCTCTTCTGCTGCCTGCACAGGATGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989759       --> CAATCAACTCAAGAGTCCCAGCCCACTTCTGCTCCCTGCACAGGATGCTA  Raphanus raphanistrum subsp. landra
EY950169       --> CAATCAACTCAAGAGTCCCAGCCCACTTCTGCTCCCTGCACAGGATGCTA  Raphanus sativus cv Rat-Tail Radish #3870
EW724710       --> CAATCAACTCAAGAGTCCCAGCCCACTTCTGCTACCCGCACAGGATGCTA  Raphanus sativus cv Early Scarlet Globe
EV569386       --> CAATCAACTCAAGAGTCCCAGCCCACTTCTGCTCCCTGCACAGGATGCTA  Raphanus raphanistrum subsp. landra
EX749313       --> CAATCAACTCAAGAGTCCCAGCCCACTTCTGCTCCCTGCACAGGATGCTA  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN21923        --> TCACACCCCTTTCCGAACTTGAAGCAGTTGACTTGGTCAAGACTGTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- TCACACCCCTTTCCGAACTTGAAGCAGTTGACTTGGTCAAGACTGTTTTC  Raphanus sativus cv Early Scarlet Globe
FD959336       <-- TCACACCCCTTTCCGAACCTGAAGCAGTTGACTTGGTCAAGACTGTTTTC  Raphanus raphanistrum subsp. maritimus
EV573943       <-- TCACACCCCTTTCCGAACCTGAAGCAGTTGACTTGGTCAAGACTGTTTTC  Raphanus raphanistrum subsp. landra
FD538532       <-- TCACACCCCTTTCCGAACTTGAAGCAGTTGACTTGGTCAAGACTGTTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538289       <-- TCACACCCCTTTCCGAACTTGAAGCAGTTGACTTGGTCAAGACTGTTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966573       <-- TCACACCCCTTTCCGAACTTGAAGCAGTTGACTTGGTCAAGACTGTTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977341       <-- TCACACCCCTTTCCGAACTTGAAGCAGTTGACTTGGTCAAGACTGTTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542151       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970139       --> TCACACCCCTTTCCGAACTTGAAGCAGTTGACTTGGTCAAGACTGTTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756225       --> TCACACCCCTTTCCGA-CTTGAAGCAGTTGACTTGGTCAAGACTGTTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD981614       --> TCACACCCCTTTCCGAACTTGAAGCAGTTGACTTGGTCAAGACTGTTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937881       --> TCACACCCCTTTCCGAACCTGAAGCAGTTGACTTGGTCAAGACTGTTTTC  Raphanus sativus var. oleiformis
FD563017       --> TCACACCCCTTTCCGAACCTGAAGCAGTTGACTTGGTCAAGACTGTTTTC  Raphanus sativus var. oleiformis
FD542462       --> TCACACCCCTTTCCGAACTTGAAGCAGTTGACTTGGTCAAGACTGTTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989759       --> TCACACCCCTTTCCGAACCTGAAGCAGTTGACTTGGTCAAGACTGTTTTC  Raphanus raphanistrum subsp. landra
EY950169       --> TCACACCCCTTTCCGAACCTGAAGCAGTTGACTTGGTCAAGACTGTTTTC  Raphanus sativus cv Rat-Tail Radish #3870
EW724710       --> TCACACCCCTTTCCGAACTTGAAGCAGTTGACTTGGTCAAGACTGTTTTC  Raphanus sativus cv Early Scarlet Globe
EV569386       --> TCACACCCCTTTCCGAACCTGAAGCAGTTGACTTGGTCAAGACTGTTTTC  Raphanus raphanistrum subsp. landra
EX749313       --> TCACACCCCTTTCCGAACCTGAAGCAGTTGACTTGGTCAAGACTGTTTTC  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN21923        --> GCATCTGCCACTGAGAGGGATATCTACACTGGAGACAAGCTTGAGATCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- GCATCTGCCACTGAGAGGGATATCTACACTGGAGACAAGCTTGAGATCAT
FD959336       <-- GCATCTGCCACTGAGAGGGATATCTACACTGGAGACAAGCTTGAGATCAT
EV573943       <-- GCATCTGCCACTGAGAGGGATATCTACACTGGAGACAAGCTTGAGATCAT
FD538532       <-- GCATCTGCCACTGAGAGGGATATCTACACTGGAGACAAGCTTGAGATCAT
FD538289       <-- GCATCTGCCACTGAGAGGGATATCTACACTGGAGACAAGCTTGAGATCAT
FD966573       <-- GCATCTGCCACTGAGAGGGATATCTACACTGGAGACAAGCTTGAGATCAT
FD977341       <-- GCATCTGCCACTGAGAGGGATATCTACAC--TAGACAAGCTTGAGATCAT
FD542151       --> ..................................................
FD970139       --> GCATCTGCCACTGAGAGGGATATCTACACTGGAGACAAGCTTGAGATCAT
EX756225       --> GCATCTGCCACTGAGAGGGATATCTACACTGGAGACAAGCTTGAGATCAT
FD981614       --> GCATCTGCCACTGAGAGGGATATCTACACT--AGACAAGCTTGAGATCAT
FD937881       --> GCATCTGCCACTG.....................................
FD563017       --> GCATCTGCCACTGAGAGGGATATCTACACTGGAGACAAGCTTGAGATCAT
FD542462       --> GCATCTGCCACTGAGAGGGATATCTACACTGGAGACAAGCTTGAGATCAT
FD989759       --> GCATCTGCCACTGAGAGGGATATCTACACTGGAGACAAGCTTGAGATCAT
EY950169       --> GCATCTGCCACTGAGAGGGATATCTACACTGGAGA...............
EW724710       --> GCATCTGCCACTGAGAGGGATATCTACACTGGAGACAAGCTTGAGATCAT
EV569386       --> GCATCTGCCACTGAGAGGGATATCTACACTGGAGACAAGCTTGAGATCAT
EX749313       --> GCATCTGCCACTGAGAGGGATATCTACACTGGAGACAAGCTTGAGATCAT

               701    -    751
UN21923        --> GATTCTCAAGGCCGATGGCATCAGGACCGAAGTCATGGACTTGAGGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- GATTCTCAAGGCCGATGGCATCAGGACCGAAGTCATGGACTTGAGGAAAG
FD959336       <-- GATTCTCAAGGCCGATGGCATCAGGACCGAAGTCATGGACTTGAGGAAAG
EV573943       <-- GATTCTCAAGGCCGATGGCATCAGGACCGAAGTCATGGACTTGAGGAAAG
FD538532       <-- GATTCTCAAGGCCGATGGCATCAGGACCGAAGTCATGGACTTGAGGAAAG
FD538289       <-- GATTCTCAAGGCCGATGGCATCAGGACCGAAGTCATGGACTTGAGGAAAG
FD966573       <-- GATTCTCAAGGCCGATGGCATCAGGACCGAAGTCATGGACTTGAGGAAAG
FD977341       <-- GATTCTCAAGGCCGATGGCATCAGGACCGAAGTCATGGACTTGAGGAAAG
FD542151       --> ..................................................
FD970139       --> GATTCTCAAG-CCGATGGCATCAG-ACCGAAGTCATGGACTTGAGGAAAG
EX756225       --> GATTCT............................................
FD981614       --> GATTCTCAA.........................................
FD937881       --> ..................................................
FD563017       --> GATTCTTAAG-CCGATGGCA..............................
FD542462       --> GATTCTCAAGGCCGATGGCATCAG-ACCGAAGTCATGGACTTGAGGAA-G
FD989759       --> GA................................................
EY950169       --> ..................................................
EW724710       --> GATTCTCAAGGCCGATGGCA..............................
EV569386       --> GATTCTCAAGGCCGATGGCATCACGACCGAAGTCATGGACTTGAGGAAAG
EX749313       --> GATTCTCAAGGCCGATGGCATCAGGACCGAAGTCATGGACTTGAGGAAAG

               751    -    801
UN21923        --> ACTAAGCAGAGCATATGAATGTTGTGAACACTCTCACCTTCGTCCGTTT-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- ACTAAGCA--GCATATGAATGTTGTGAACACTCTCACCTCCGTCCGTTTC  Raphanus sativus cv Early Scarlet Globe
FD959336       <-- ACTAAGCA--GCATATGAATGTTGTGAACACTCTCACCTTCGTCCTTTT-  Raphanus raphanistrum subsp. maritimus
EV573943       <-- ACTAAGCA--GCATATGAATGTTGTGAACACTCTCACCTTCGTCCTTTT-  Raphanus raphanistrum subsp. landra
FD538532       <-- ACTAAGCAGAGCATATGAATGTTGTGAACACTCTCACCTTCGTCCGTTT-  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538289       <-- ACTAAGCAGAGCATATGAATGTTGTGAACACTCTCACCTTCGTCCGTTT-  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966573       <-- ACTAAGCAGAGCATATGAATGTTGTGAACACTCTCACCTTCGTCCGTTT-  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977341       <-- ACTGAGCAGAGCATATGAATGTTGTGAACACTCTCACCTTCGTCCGTTT-  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542151       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970139       --> ACTAAGCAGAGCATATGA-TG-TGTG-ACACTCTCAC--TCGTCCGTTT-  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756225       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD981614       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937881       --> ..................................................  Raphanus sativus var. oleiformis
FD563017       --> ..................................................  Raphanus sativus var. oleiformis
FD542462       --> ACTAAGCAGAGCATATGAATGTTGTGA-CACTCTCACCTTCGTCCGT...  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989759       --> ..................................................  Raphanus raphanistrum subsp. landra
EY950169       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EW724710       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV569386       --> ACTAAGCAG--CATATGAATGTTGTGAACACTCTCACCTTCGTCCTTTT-  Raphanus raphanistrum subsp. landra
EX749313       --> ACTAAGCAG--CATATGAATGTTGTGAACACTCTCACCTTCGTCCTTTT-  Raphanus raphanistrum subsp. maritimus

               801    -    851
UN21923        --> TTTT---CTTATTCGCATCTCAACATTAGTTCCCC-TTGGTTATCTTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- TTTT---CTTATTCGCATCTCAACATTAGTTCCCCCTTGGTTATCTTGAA
FD959336       <-- TTTTTTTCTTATTCGCATCTCAACATTAGTTCCCC-TTGGTTATCTTGTA
EV573943       <-- TTTT--TCTTATTCGCATCTCAACATTAGTTCCCC-TTGGTTATCTTGTA
FD538532       <-- TTTT---CTTATTCGCATCTCAACATTAGTTCCCC-TTGGTTATCTTGTA
FD538289       <-- TTTT---CTTATTCGCATCTCAACATTAGTTCCCC-TTGGTTATCTTGTA
FD966573       <-- TTTT---CTTATTCGCATCTCAACATTAGTTCCCC-TTGGTTATCTTGTA
FD977341       <-- TTTT---TTTATTCGCATCTCAAAATTAGTTCCCC-TTGGTTATCTTGTA
FD542151       --> ..................................................
FD970139       --> TTT----CTTAT-CGCATCTCAca..........................
EX756225       --> ..................................................
FD981614       --> ..................................................
FD937881       --> ..................................................
FD563017       --> ..................................................
FD542462       --> ..................................................
FD989759       --> ..................................................
EY950169       --> ..................................................
EW724710       --> ..................................................
EV569386       --> TTTT--TCTTATTCGCATCTCAACATTAGTTCCCC-TTGGTTATCTTGTA
EX749313       --> TTTT---CTTATTCGCATCTCAACATTAGTTCCCC-TTGGTTATCTTGTA

               851    -    901
UN21923        --> CTGTATTATTGGCTTAATGTATTACAGTAATCAACTC--ATGCTTGAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- CTGTATTATTGGCTTAATGTATTACAGTAATGAACTCTCATGCTTGAAGT
FD959336       <-- CTGTATTATTGGCTTAATGTATTACAGTAATCAACTC--ATGCTTGAAGC
EV573943       <-- CTGTATTATTGGCTTAATGTATTACAGTAATCA-CTC--ATGCTTGAAGT
FD538532       <-- CTGTATTATTGGCTTAATGTATTACAGTAATCAACTC--ATGCTTGAAGT
FD538289       <-- CTGTATTATTGGCTTAATGTATTACAGTAATCAACTC--ATGCTTGAAGT
FD966573       <-- CTGTATTATTGGCTTAATGTATTACAGTAATCAACTC--ATGCTTGAAGT
FD977341       <-- CTGTATTATTGGCTTAATGTATTACAGTAATCAACTC--ATGCTTGAAGT
FD542151       --> ..................................................
FD970139       --> ..................................................
EX756225       --> ..................................................
FD981614       --> ..................................................
FD937881       --> ..................................................
FD563017       --> ..................................................
FD542462       --> ..................................................
FD989759       --> ..................................................
EY950169       --> ..................................................
EW724710       --> ..................................................
EV569386       --> CTGTATTATTGGCTTAATGTATTACAGTAATCA-CTC--ATGCTTGAAGT
EX749313       --> CTGTATTATTGGCTTAATGTATTACAGTAATCAACTC--ATGCTTGAAGT

               901    -    951
UN21923        --> TTCCTTTATGACAAAGTTCTTTTGGAGAGTTTTAATAACAATATTCGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW729160       <-- TTCCTTTATGACAAAGTACTTTTGGAGAGTTTT.................
FD959336       <-- TTCCTTTATGACAAAGTTCTTTTGG.........................
EV573943       <-- TTCCTTTAcg........................................
FD538532       <-- TTCCTTTATGACAAAGTTCTTTTGGAGAGTTTT.................
FD538289       <-- TTCCTTTATGACAAAGTTCTTTTGGAGAGTTTTAATAACAATATTCGATT
FD966573       <-- TTCCTTTATGACAAAGTTCTTTTGGAGAGTTTT.................
FD977341       <-- TTCCTTTATGACAAAGTTCTTTTGGAGAGTTTT.................
FD542151       --> ..................................................
FD970139       --> ..................................................
EX756225       --> ..................................................
FD981614       --> ..................................................
FD937881       --> ..................................................
FD563017       --> ..................................................
FD542462       --> ..................................................
FD989759       --> ..................................................
EY950169       --> ..................................................
EW724710       --> ..................................................
EV569386       --> TTCCTTTAc.........................................
EX749313       --> TTCCTTTATGACAAAG..................................

               951    -   1001
UN21923        --> TCTTAGCTAC
                   ~~~~~~~~~~
EW729160       <-- ..........
FD959336       <-- ..........
EV573943       <-- ..........
FD538532       <-- ..........
FD538289       <-- TCTTAGCTAC
FD966573       <-- ..........
FD977341       <-- ..........
FD542151       --> ..........
FD970139       --> ..........
EX756225       --> ..........
FD981614       --> ..........
FD937881       --> ..........
FD563017       --> ..........
FD542462       --> ..........
FD989759       --> ..........
EY950169       --> ..........
EW724710       --> ..........
EV569386       --> ..........
EX749313       --> ..........