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Alignment for radish unigene UN21946

               1      -     51
UN21946        --> TATGTATTAAAAACCTTTTATGGAATCTAATGACAATACAGGGTATCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- ..................................................
FD544121       <-- ..................................................
FD982042       <-- ..................................................
FY450171       <-- ..................................................
FD542263       <-- ..................................................
EY939242       <-- ..................................................
FD568344       <-- ..................................................
FD576565       <-- ..................................................
FD950198       <-- ..................................................
FD974694       --> TATGTATTAAAAACCTTTTATGGAATCTAATGACAATGCAGGATATCTTA
FD529258       --> ..........................gTAATGACAATACAGGGTATCTTA
FD539791       --> ............................AATGACAATACAGGGTATCTTA
FD975525       --> .........................................GGTATCTTA
EX750757       --> ..................................caggatatcttatatg
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> ..................................................
FD945731       --> ..................................................
FD977690       --> ..................................................

               51     -    101
UN21946        --> TAT----ATATATGGCTTCAAGTATTGAAAACAACGTTGGGGTTTCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..............GCTTCAAGTATTGAAAACAACGTTGGGGTTTCCATC  Raphanus raphanistrum subsp. landra
FD532925       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD544121       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982042       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY450171       <-- ..................................................  Raphanus sativus cv GSK3-1
FD542263       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY939242       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD568344       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD576565       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD950198       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD974694       --> TATGTATATATATGGCTTCAAGTATTGAAAACAAAGTTGGGGTTTCCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD529258       --> TAT----ATATATGGCTTCAAGTATTGAAAACAAAGTTGGGGTTTCCATC  Raphanus raphanistrum subsp. maritimus
FD539791       --> TAT----ATATATGGCTTCAAGTATTGAAAACAAAGTTGGGGTTTCCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975525       --> TAT----ATATATGGCTTCAAGTATTGAAAACAAAGTTGGGGTTTCCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750757       --> TAT----ATATATGGCTTCAAGTATTGAAAACAACGTTGGGGTTTCCATC  Raphanus raphanistrum subsp. maritimus
EY935215       --> .............GGCTTCAAGTATTGAAAACAACGTTGGGGTTTCCATC  Raphanus sativus cv Early Scarlet Globe
FD545644       --> .............GGCTTCAAGTATTGAAAACAAAGTTGGGGTTTCCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD581040       --> .............GGCTTCAAGTATTGAAAACAACGTTGGGGTTTCCATC  Raphanus sativus cv Rat-Tail Radish #3870
FD945731       --> .............GGCTTCAAGTATTGAAAACAACGTTGGGGTTTCCATC  Raphanus sativus cv Early Scarlet Globe
FD977690       --> .......................................GGGTTTCCATC  Raphanus raphanistrum subsp. raphanistrum (NY)

               101    -    151
UN21946        --> TCATTGTATTCAGAGATAATGGTAACACAATGAATTGACATTAATAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- TCATTGTATTCAGAGATAATGGTAACACAATGAATTGACATTAATAAGCA
FD532925       <-- ..................................................
FD544121       <-- ..................................................
FD982042       <-- ..................................................
FY450171       <-- ..................................................
FD542263       <-- ..................................................
EY939242       <-- ..................................................
FD568344       <-- ..................................................
FD576565       <-- ..................................................
FD950198       <-- ..................................................
FD974694       --> TCATTGTATTCAGAGATAATGGTAACACAATGAATTGACATTAATAAGCA
FD529258       --> TCATTGTATTCAGAGATAATGGTAACACAATGAATTGACATTAATAAGCA
FD539791       --> TCATTGTATTCAGAGATAATGGTAACACAATGAATTGACATCAATAAGCA
FD975525       --> TCATTGTATTCAGAGATAATGGTAACACAATGAATTGACATTAATAAGCA
EX750757       --> TCATTGTATTCAGAGATAATGGTAACACAATGAATTGACATTAATAAGCA
EY935215       --> TCATTGTATTCAGAAATAATGGTAACACAATGAATTGACATTAATAAGCA
FD545644       --> TCATTGTATTCAGAGATAATGGTAACACAATGAATTGACATTAATAAGCA
FD581040       --> TCATTGTATTCAGAGATAATGGTAACACAATGAATTGACATTAATAAGCA
FD945731       --> TCATTGTATTCAGAGATAATGGTAACACAATGAATTGACATTAATAAGCA
FD977690       --> TCATTGTATTCAGAGATAATGGTAACACAATGAATTGACATTAATAAGCA

               151    -    201
UN21946        --> AAAAAAA-TCAGCTGGTCAGAAACAAATGAATCTGACAACCTCTCTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- AAAAAAA-TCAGCTGGT---CAACAAATGAATCTGACAACCTCTCTCTCT
FD532925       <-- ...........................................TCTCTCT
FD544121       <-- ..................................................
FD982042       <-- ..................................................
FY450171       <-- ..................................................
FD542263       <-- ..................................................
EY939242       <-- ..................................................
FD568344       <-- ..................................................
FD576565       <-- ..................................................
FD950198       <-- ..................................................
FD974694       --> AAAAAAA-TCAGCTGGTCAGAAACAAATGAATCTGACAACCTCTCTCTCT
FD529258       --> AAAAAA--TCAGCTGGTCAAAAACAAATGAATCTGACAACCTCTCTCTCT
FD539791       --> AAAAAAAATCAGCTGGTCAAAAACAAATGAATCTGACAACTTCTCTC-C-
FD975525       --> AAAAAA--TCAGCTGGTCAGAAACAAATGAATCTGACAACCTCTCTCTCT
EX750757       --> AAAAAAA-TCAGCTGGTCAGAAACAAATGAATATGACAACCTCTCTCTCT
EY935215       --> AAAAAAA-TCAGCTGGTCAAAAACAAATGAATCTGACAACCTCTCTCTCT
FD545644       --> AAAAAAA-TCAGCTGGTCAGAAACAAATGAATCTGACAACCTCTCTCTCT
FD581040       --> AAAAAAA-TCAGCTGGTCAGAAACAAATGAATCTGACAACCTCTCTCTCT
FD945731       --> AAAAAAA-TCAGCTGGTCAGAAACAAATGAATCTGACAACCTCTCTCTCT
FD977690       --> AAAAAA--TCAGCTGGTCAGAAACAAATGAATCTGACAACCTCTCTCTCT

               201    -    251
UN21946        --> CTCTCTTTCTCTTTGCTTGCTTCATTTCATTCTGCTGTTACCTTGATCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- CTCTCTTTCTCTTTGCTTGCTTCATTTCATTCTGCTGTTACCTTGATCTG
FD532925       <-- CTCTCTTTCTCTTTGCTTGCTTCATTTCATTCTGCTGTTACCTTGATCTG
FD544121       <-- ..................................................
FD982042       <-- ..................................................
FY450171       <-- ..................................................
FD542263       <-- ..................................................
EY939242       <-- ..................................................
FD568344       <-- ..................................................
FD576565       <-- ..................................................
FD950198       <-- ..................................................
FD974694       --> CTCTCTTTCTCTTTGCTTGCTTCATTTCATTCTGCTGTTACCTTGATCTG
FD529258       --> CTCTCTTTCTCTTTGCTTGCTTCATTTCATTCTGCTGTTACCTTGATCTG
FD539791       --> CTCTCTTTCTCTTTGCTTGCTTCATTTCATTCTGCTGTTACCTTGATCTG
FD975525       --> CTCTCTTTCTCTTTGCTTGCTTCATTTCATTCTGCTGTTACCTTGATCTG
EX750757       --> CTCTCTTTCTCTTTGCTTGCTTCATTTCATTCTGCTGTTACCTTGATCTG
EY935215       --> CTCTCTTTCTCTTTGCTTGCTTCATTTCATTCTGCTGTTACCTTGATCTG
FD545644       --> CTCTCTTTCTCTTTGCTTGCTTCATTTCATTCTGCTGTTACCTTGATCTG
FD581040       --> CTCTCTTTCTCTTTGCTTGCTTCATTTCATTCTGCTGTTACCTTGATCTG
FD945731       --> CTCT--TTCTCTTTGCTTGCTTCATTTCATTCTGCTGTTACCTTGATCTG
FD977690       --> CTCTCTTTCTCTTTGCTTGCTTCATTTCATTCTGCTGTTACCTTGATCTG

               251    -    301
UN21946        --> TCCATAGAGATTAGGGTCTGCTTCATAGTATACAACATCTCCTTCATCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- TCCATAGAGATTAGGGTCTGCTTCATAGTATACAACATCTCCTTCATCGC
FD532925       <-- TCCATAGAGATTAGGGTCTGCTTCATAGTATACAACATCTC-TTCATCGC
FD544121       <-- ..................................................
FD982042       <-- ..................................................
FY450171       <-- ..................................................
FD542263       <-- ..................................................
EY939242       <-- ..................................................
FD568344       <-- ..................................................
FD576565       <-- ..................................................
FD950198       <-- ..................................................
FD974694       --> TCCATAGAGATTAGGGTCTGCTTCATAGTATACAACATCTCCTTCATCGC
FD529258       --> TCCAT.............................................
FD539791       --> TCCATAGAGATTAGGGTCTGCTTCATAGTATACAACATCTCCTTCATCAC
FD975525       --> TCCATAGGGATTAGGGTCTGCTTCATAGTATACAACATCTCCTTCATCGC
EX750757       --> TCCATAGAGATTAGGGTCTGCTTCATAGTATACAACATCTCCTTCATCGC
EY935215       --> TCCATAAAGATTAGGGTCTGCTTCATAGTATACAACATCTCCTTCATCGC
FD545644       --> TCCATAGAGATTAGGGTCTGCTTCATAGTATACAACATCTCCTTCATCGC
FD581040       --> TCCATAGAGATTAGGGTCTGCTTCATAGTATACAACATCTCCTTCATCGC
FD945731       --> TCCATAGAGATTAGGGTCTGCTTCATAGTATACAACATCTCCTTCATCGC
FD977690       --> TCCATAGAGATTAGGGTCTGCTTCATAGTATACAACATCTCCTTCATCGC

               301    -    351
UN21946        --> TCACAAAATGATCTTCTTTAATACTTTTTGCTAAGATTCCCAGTAAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- TCACAAAATGATCTTCTTTAATACTTTTTGCTAAGATTCCCAGTAAATGT
FD532925       <-- TCACAAAATGATCTTCTTTAATACTTTTTGCTAAGATTCCCAGTAAATGT
FD544121       <-- ........................cTTTTGCTAAGAT-CCCAGTAAATGT
FD982042       <-- ..................................................
FY450171       <-- ..................................................
FD542263       <-- ..................................................
EY939242       <-- ..................................................
FD568344       <-- ..................................................
FD576565       <-- ..................................................
FD950198       <-- ..................................................
FD974694       --> TCACAAAATGATCTTCTTTAATACTTTTTGCTAAGATTCCCAGTAAATGT
FD529258       --> ..................................................
FD539791       --> TCACAAAATGATCTTCTTTAATACTTTTTGCTAAAATTCCCAGTAAATGT
FD975525       --> TCACAAAATGATCTTCTTTAATACTTTTTGCTAAGATTCCCAGTAAATGT
EX750757       --> TCACAAAATGATCTTCTTTAATACTTTTTGCTAAAATTCCCAGTAAATGT
EY935215       --> TCACAAAATGATCTTCTTTAATACTTTTTGCTAAAATTCCCAGTAAATGT
FD545644       --> TCACAAAATGATCTTCTTTAATACTTTTTGCTAAGATTCCCAGTAAATGT
FD581040       --> TCACAAAATGATCTTCTTTAATACTTTTTGCTAAGATTCCCAGTAAATGT
FD945731       --> TCACAAAATGATCTTCTTTAATACTTTTTGCTAAGATTCCCAGTAAATGT
FD977690       --> TCACAAAATGATCTTCTTTAATACTTTTTGCTAAGATTCCCAGTAAATGT

               351    -    401
UN21946        --> AATGGCAAAGGTCCAGACTTATCAGGCTCCCTGTAATACTTCCCTAATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- AATGGCAAAGGTCCAGACTTATCAGGCTCCCTGTAATACTTCCCTAATAC
FD532925       <-- AATGGCAAAGGTCCAGACTTATCAGGCTCCCTGTAATACTTCCCTAATAC
FD544121       <-- AATGGCAAAGGTCCAGACTTATCAGGCTCCCTGTAATACTTCCCTAATAC
FD982042       <-- ..................................................
FY450171       <-- ..................................................
FD542263       <-- ..................................................
EY939242       <-- ..................................................
FD568344       <-- ..................................................
FD576565       <-- ..................................................
FD950198       <-- ..................................................
FD974694       --> AATGGCAAAGGTCCAGACTTATCAGGCTCCCTGTAATACTTCCCTAATAC
FD529258       --> ..................................................
FD539791       --> AATGGCAAAGGTCCAGACTTATCAGGCTCCCTGTAATACTTCCCTAATAC
FD975525       --> AATGGCAAAGGTCCAGACTTATCAGGCTCCCTGTAATACTTCCCTAATAC
EX750757       --> AATGGCAAAGGTCCAGACTTATCAGGCTCCCTGTAATACTTCCCTAATAC
EY935215       --> AATGGCAAAGGTCCAAACTTATCAGGCTCCCTGTAATACTTCCCTAATAC
FD545644       --> AATGGCAAAGGTCCAGACTTATCAGGCTCCCTGTAATACTTCCCTAATAC
FD581040       --> AATGGCAAAGGTCCAGACTTATCAGGCTCCCTGTAATACTTCCCTAATAC
FD945731       --> AATGGCAAAGGTCCAGACTTATCAGGCTCCCTGTAATACTTCCCTAATAC
FD977690       --> AATGGCAAAGGTCCAGACTTATCAGGCTCCCTGTAATACTTCCCTAATAC

               401    -    451
UN21946        --> TGGTTTAGCTGCTTCTGTTGCTTCTACTAGATGGTAATGTGGGATCTGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- TGGTTTAGCTGCTTCTGTTGCTTCTACTAGATGGTAATGTGGGATCTGCG  Raphanus raphanistrum subsp. landra
FD532925       <-- TGGTTTAGCTGCTTCTGTTGCTTCTACCAGATGATAATGTGGGATCTGAG  Raphanus raphanistrum subsp. maritimus
FD544121       <-- TGGTTTAGCTGCTTCTGTTGCTTCTACTAGATGGTAATGTGGGATCTGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982042       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY450171       <-- ..................................................  Raphanus sativus cv GSK3-1
FD542263       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY939242       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD568344       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD576565       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD950198       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD974694       --> TGGTTTAGCTGCTTCTGTTGCTTCTACTAGATGGTAATGTGGGATCTGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD529258       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD539791       --> TGGTTTAGCTGCTTCTGTTGCTTCTACTAAATGGTAATGTGGGATCTGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975525       --> TGGTTTAGCTGCTTCTGTTGCTTCTACCAGATGATAATGTGGGATCTGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750757       --> TGGTTTAGCTGCTTCTGTTGCTTCTACTAAATGGTAATGTGGGATCTGCG  Raphanus raphanistrum subsp. maritimus
EY935215       --> TGGTTTAACTGCTTCTGTTGCTTCTACTAAATGGTAATGTGGGATCTGCG  Raphanus sativus cv Early Scarlet Globe
FD545644       --> TGGTTTAGCTGCTTCTGTTGCTTCTACTAGATGGTAATGTGGGATCTGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD581040       --> TGGTTTAGCTGCTTCTGTTGCTTCTACTAAATGGTGATGTGGGATCTGCG  Raphanus sativus cv Rat-Tail Radish #3870
FD945731       --> TGGTTTAGCTGCCTCTGTTGCTTCTACTAAATGGTAATGTGGGATCTGCG  Raphanus sativus cv Early Scarlet Globe
FD977690       --> TGGTTTAGCTGCTTCTGTTGCTTCTACCAGATGATAATGTGGGATCTGAG  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN21946        --> GGAAAAGATGATGTATCACATGTGTTCCAATGTCGTGATGGATGTTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- GGAAAAGATGATGTATCACATGTGTTCCAATGTCGTGATGGATGTTGTTG  Raphanus raphanistrum subsp. landra
FD532925       <-- GGAAAAGATGATGTATCACATGAGTTCCAATGTCGTGATGGATGTTGTTG  Raphanus raphanistrum subsp. maritimus
FD544121       <-- GGAAAAGATGATGTATCACATGAGTTCCAATGTCGTGATGGATGTTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982042       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY450171       <-- ..................................................  Raphanus sativus cv GSK3-1
FD542263       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY939242       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD568344       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD576565       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD950198       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD974694       --> GGAAAAGATGATGTATCACATGTGTTCCAATGTCGTGATGGATGTTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD529258       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD539791       --> GGAAAAGATGATGTATCACATGAGTTCCAATGTCGTGATGGATGTTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975525       --> GGAAAAGATGATGTATCACATGAGTTCCAATGTCGTGATGGATGTTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750757       --> GGAAAAGATGATGTATCACATGTGTTCCAATGTCGTGATGGATGTTGTTG  Raphanus raphanistrum subsp. maritimus
EY935215       --> GGAAAAAATGATGTATCACATGTGTTCCAATGTCGTGATGGATGTTGTTG  Raphanus sativus cv Early Scarlet Globe
FD545644       --> GGGAAAGATGATGTATCACATGTGTTCCAATGTCGTGATGGATGTTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD581040       --> GGAAAAGATGATGTATCACATGTGTTCCAATGTCGTGATGGATGTTGTTG  Raphanus sativus cv Rat-Tail Radish #3870
FD945731       --> GGAAAAGATGATGTATCACATGTGTTCCAATGTCGTGATGGATGTTGTTG  Raphanus sativus cv Early Scarlet Globe
FD977690       --> GGAAAAGATGATGTATCACATGAGTTCCAATGTCGTGATGGATGTTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN21946        --> ATCAGTCCGTAGTCACGGTCCAATGTCGTAAGTCCTCCTCTCAAGTAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ATCAGTCCGTAGTCACGGTCCAATGTCGTAAGTCCTCCTCCCAAGTAACT  Raphanus raphanistrum subsp. landra
FD532925       <-- ATCAGTCCGTAGTCACGGTCCAATGTCGTAAGCCCTCCTCTTAAGTAACT  Raphanus raphanistrum subsp. maritimus
FD544121       <-- ATCAATCCGTAGTCACGGTCCAATGTCGTAAGCCCTCCTCTCAAGTAACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982042       <-- .................................................T  Raphanus raphanistrum subsp. raphanistrum (NY)
FY450171       <-- ..................................................  Raphanus sativus cv GSK3-1
FD542263       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY939242       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD568344       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD576565       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD950198       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD974694       --> ATCAGTCCGTAGTCACGGTCCAATGTCGTAAGTCCTCCTCTCAAGTAACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD529258       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD539791       --> ATCAATCCGTAGTCACGGTCCAATGTCGTAAGCCCTCCTCTCAAGTAACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975525       --> ATCAGTCCGTAGTCACGGTCCAATGTCGTAAGCCCTCCTCTTAAGTAACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750757       --> ATCAGTCCGTAGTCACGGTCCAATGTCGTAAGTCCTCCTCTCAAGTAACT  Raphanus raphanistrum subsp. maritimus
EY935215       --> ATCAGTCCGTAATCACGGTCCAATGTCGTAAGTCCTCCTCTCAAGTAACT  Raphanus sativus cv Early Scarlet Globe
FD545644       --> ATCAGTCCGTAGTCACGGTCCAATGTCGTAAGTCCTCCTCTCAAGTAACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD581040       --> ATCAGTCCGTAGTCACGGTCCAATGTCGTAAGTCCTCCTCTCAAGTAACT  Raphanus sativus cv Rat-Tail Radish #3870
FD945731       --> ATCAGTCCGTAGTCACGGTCCAATGTCGTAAGTCCTCCTCTCAAGTAACT  Raphanus sativus cv Early Scarlet Globe
FD977690       --> ATCAGTCCGTAGTCACGGTCCAATGTCGTAAGCCCTCCTCTTAAGTAACT  Raphanus raphanistrum subsp. raphanistrum (NY)

               551    -    601
UN21946        --> CCATTCCTTCCCACGGTACCAAGGGAGCTTATCTTCATGACCATGGTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- CCATTCCTTCCCACGGTACCAAGGGAGCTTATCTTCATGACCATGGTGAT
FD532925       <-- CCATTCCTTCCCACGGTACCAAGGGAGCTTATCTTCATGACCATGGTGAT
FD544121       <-- CCATTCCTTCCCACGGTACCAAGGGAGCTTATCTTCATGACCATGGTGAT
FD982042       <-- CCATTCCTTCCCACGGTACCAAGGGAGCTTATCTTCATGACCATGGTGAT
FY450171       <-- ..................................................
FD542263       <-- ..................................................
EY939242       <-- ..................................................
FD568344       <-- ..................................................
FD576565       <-- ..................................................
FD950198       <-- ..................................................
FD974694       --> CCATTCCTTCCCACGGTACCAAGGGAGCTTATCTTCATGACCATGGTGAT
FD529258       --> ..................................................
FD539791       --> CCATTCCTTCCCACGGTACCAAGGGAGCTTATCTTCATGACCATGGTGAT
FD975525       --> CCATTCCTTCCCACGGTACCAAGGGAGCTTATCTTCATGACCATGGTGAT
EX750757       --> CCATTCCTTCCCACGGTACCAAGGGAGCTTATCTTCATGACCATGGTGAT
EY935215       --> CCATTCCTTCCCACGGTACCAAGGGAGCTTATCTTCATGACCATGGTGAT
FD545644       --> CCATTCCTTCCCACGGTACCAAGGGAGCTTATCTTCATGACCATGGTGAT
FD581040       --> CCATTCCTTCCCACGGTACCAAGGGAGCTTATCTTCATGACCATGGTGAT
FD945731       --> CCATTCCTTCCCACGGTACCAAGGGAGCTTATCTTCATGACCATGGTGAT
FD977690       --> CCATTCCTTCCCACGGTACCAAGGGAGCTTATCTTCATGACCATGGTGAT

               601    -    651
UN21946        --> GAAGGTAAGTCACAAAGTCCAACCACATAACATTTATCCAGTAAGGAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- GAAGGTAAGTCACAAAGTCCAACCACATAACATTTATCCAGTAAGGAACT
FD532925       <-- GAAGGTAAGTCACAAAGTCCAACCACATTACATTTATCCAGTAAGGAACT
FD544121       <-- GCAGGTAAGTCACAAAGTCCAACCACATAACATTTATCCAGTAAGGAACT
FD982042       <-- GAAGGTAAGTCACAAAGTCCAACCACATTACATTTATCCAGTAAGGAACT
FY450171       <-- ..................................................
FD542263       <-- ..................................................
EY939242       <-- ..................................................
FD568344       <-- ..................................................
FD576565       <-- ..................................................
FD950198       <-- ..................................................
FD974694       --> GAAGGTAAGTCACAAAGTCCAACCACATAACATTTATCCAGTAAGGAACT
FD529258       --> ..................................................
FD539791       --> GCAGGTAAGTCACAAAGTCCAACCACATAACATTTATCCAGTAAGGAACT
FD975525       --> GAAGGTAAGTCACAAAGTCCAACCACATTACATTTATCCAGTAAGGAACT
EX750757       --> GAAGGTAAGTCACAAAGTCCAGCCACATAACATTTATCCAGTAAGGAACT
EY935215       --> GAAGGTAAGTCACAAAGTCCAACCACATAACATTTATCCAGTAAGGAACT
FD545644       --> GAAGGTAAGTCACAAAGTCCAACCACATAACATTTATCCAGTAAGGAACT
FD581040       --> GAAGGTAAGTCACAAAGTCCAACCACATAACATTTATCCAGTAAGGAACT
FD945731       --> GAAGGTAAGTCACAAAGTCCAACCACATAACATTTATCCAGTAAGGAACT
FD977690       --> GAAGGTAAGTCACAAAGTCCAACCACATTACATTTATCCAGTAAGGAACT

               651    -    701
UN21946        --> ACATAAAGTTTGAGCATTTGCATAGGACCCATCACGAAGTTGAGACAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ACATAAAGTTTGAGCATTTGCACAGGACCCATCACGAAGTTGAGACAGAC  Raphanus raphanistrum subsp. landra
FD532925       <-- ACATAAAGTTTAAGCATTTGCATAGGACCCATCACGAAGTTGAGACAGAC  Raphanus raphanistrum subsp. maritimus
FD544121       <-- ACATAAAGTTTAAGCATTTGCATAGGACCCATCACAAAGTTGAGGCAGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982042       <-- ACATAAAGTTTAAGCATTTGCATAGGACCCATCACGAAGTTGAGACAGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY450171       <-- ..................................................  Raphanus sativus cv GSK3-1
FD542263       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY939242       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD568344       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD576565       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD950198       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD974694       --> ACATAAAGTTTGAGCATTTGCACAGGACCCATCACGAAGTTGAGACAGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD529258       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD539791       --> ACATAAAGTTTAAGCATTTGCATAGGACCCATCACAAAGTTGAGGCAGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975525       --> ACATAAA...........................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750757       --> ACATAAAGTTTAAGCATTTGCATAGGACCCATCACGAAGTTGAGACAGAC  Raphanus raphanistrum subsp. maritimus
EY935215       --> ACATAAAGTTTGAGCATTTGCACAGGACCCATCACGAA............  Raphanus sativus cv Early Scarlet Globe
FD545644       --> ACATAAAGTTTGAGCATTTGCACGGGACCCATCACGAAGTTGAGACAGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD581040       --> ACATAAAGTTTGAGCATTTGCACAGGACCCATCACGAAGTTGAGACAGAC  Raphanus sativus cv Rat-Tail Radish #3870
FD945731       --> ACATAAAGTTTGAGCATTTGCACAGGACCCATCACGAAGTTGAGACAGAC  Raphanus sativus cv Early Scarlet Globe
FD977690       --> ACATAAAGTTTAAGCATTTGCATAGGACCCATCACGAAGTTGAGACAGAC  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN21946        --> AAGCAGAGCAGCCATTGCAGTCCAACAAGCGGTGGATGTGAGAACATCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- AAGC..............................................  Raphanus raphanistrum subsp. landra
FD532925       <-- AAGCAGAGCAGCCATTGCAGTCCAACAAGCGGTGGATGTAAGAACATCAT  Raphanus raphanistrum subsp. maritimus
FD544121       <-- AAGCAGAGCAGCCATTGCAGTCCAACAAGCGGTGGAAGTGAGAACATCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982042       <-- AAGCAGAGCAGCCATTGCAGTCAAACAAGCGGTGGATGTAAGAACATCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY450171       <-- ..................................................  Raphanus sativus cv GSK3-1
FD542263       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY939242       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD568344       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD576565       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD950198       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD974694       --> AAGCAGAGCAGCCATTGCAGTCCAACAAGCGGTAGAAGTGAGAACATCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD529258       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD539791       --> AAGCAGAGCAGCCATTGCAGTCCAACAAGCGGTGGAAGTGAGAACATCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975525       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750757       --> AAGCAGAGCAGCCATTGCAGTCCAACAAGCGGTGGATGTAAGAACATCAT  Raphanus raphanistrum subsp. maritimus
EY935215       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD545644       --> AAGCAGA...........................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD581040       --> AAGCAGAGCAGCCATTGCAGTCCAACAAGCGGTAGAAGTGAGAACATCAT  Raphanus sativus cv Rat-Tail Radish #3870
FD945731       --> AAGCAG............................................  Raphanus sativus cv Early Scarlet Globe
FD977690       --> AAGCAGAGCAGCCATTGCAGTCAAACAAGCGGTGGATGTa..........  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN21946        --> TTCTCTCTTTAGGGAGGAACAAGTCGCTGTCCGGATGGTAATGAGAACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- TTCTCTCTTTAGGGAGGAACAAGTCGCTGTCCGGATGGTAATGAGAACCC
FD544121       <-- TTCTCTCTTTAGGGAGGAACAAATCGCTGTCCGGATGGTAATGAGAACCC
FD982042       <-- TTCTCTCTTTAGGGAGGAACAAGTCGCTGTCCGGATGGTAATGAGAACCC
FY450171       <-- ..CTCTCTTTAGGGAGGAACAAGTCGCTGTCCGGATGGTAATGAGAACCC
FD542263       <-- ......................GTCGCTGTCTGGATGGTAATGAGAACCC
EY939242       <-- ..................................................
FD568344       <-- ..................................................
FD576565       <-- ..................................................
FD950198       <-- ..................................................
FD974694       --> TTCTCT............................................
FD529258       --> ..................................................
FD539791       --> TTCTCTCT..........................................
FD975525       --> ..................................................
EX750757       --> TTCTCTCTTTAGGGAGGAACAAGTCGCTGTCCGGATGGTAATGAGAACCC
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> TTCTCTCTTTAGGGAGGAACAAGTCGCTGTCCGGATGGTAATGAGAACCC
FD945731       --> ..................................................
FD977690       --> ..................................................

               801    -    851
UN21946        --> TTCTTCCCCGGACTTCGAGCCCACAAGTAGAAAGGGTAAGCGAGCATCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- TTCTTCCCCGGACTTCGAGCCCACAAGTAGAAAGGGTAAGCGAGCATCAC
FD544121       <-- TTCTTCCCCGGACTTCGAGCCCACAAGTAGAAAGGATAAGCGAGCATCAC
FD982042       <-- TTCTTCCCCGGACTTCGAGCCCACAAGTAGAAAGGGTAAGCGAGCATCAC
FY450171       <-- TTCTTCCCCGGACTTCGAGCCCACAAGTAGAAAGGGTAAGCGAGCATCAC
FD542263       <-- TTCTTCCCCGGACTTCGAGCCCACAAGTAGAAAGGGTAAGCGAGCATCAC
EY939242       <-- .....................CACAAGTAGAAAGGGTAAGCGAGCATCAC
FD568344       <-- ..........................................AGCATCAC
FD576565       <-- ..................................................
FD950198       <-- ..................................................
FD974694       --> ..................................................
FD529258       --> ..................................................
FD539791       --> ..................................................
FD975525       --> ..................................................
EX750757       --> TTCTT.............................................
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> TTCTTCCCCGGACTTCTTGCCCACAAGTA.....................
FD945731       --> ..................................................
FD977690       --> ..................................................

               851    -    901
UN21946        --> AAGAGGCAATGTAAATCTAAAGAACCTAGTCGGTTTGTCCAAACTCTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- AAGAGGCAATGTAAATCTAAAGAACCTAGTCGGTTTGTCCAAACTCTTGT
FD544121       <-- AAGAGGCAATGTAAATCTAAAGAATCTAGTCGGTTTGTCCAAACTCTTGT
FD982042       <-- AAGAGGCAATGTAAATCTAAAGAACCTAGTCGGTTTGTCCAAACTCTTGT
FY450171       <-- AAGAGGCAATGTAAATCTAAAGAACCTAGTCGGTTTGTCCAAACTCTTGT
FD542263       <-- AAGAGGCAATGTAAATCTAAAGAACCGAGTCGGTTTGTCCAAACTCTTGT
EY939242       <-- AAGAGGCAATGTAAATCTAAAGAATCTAGTCGGGTCGTCCAAACTCTTGT
FD568344       <-- A-GAGGCAATGTAA-TCTAAAGAATGTAGTCGGTT-GTCCAAACTCTTGT
FD576565       <-- ..........................TAGTCGGTT-GTCCAAACTCTTGT
FD950198       <-- ..................................................
FD974694       --> ..................................................
FD529258       --> ..................................................
FD539791       --> ..................................................
FD975525       --> ..................................................
EX750757       --> ..................................................
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> ..................................................
FD945731       --> ..................................................
FD977690       --> ..................................................

               901    -    951
UN21946        --> AGATTTTCTCAGACATAGGATGCCAAGATTCATCGTTCTCAACATGTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- AGATTTTCTCAGACATAGGATGCCAAGATTCGTCGTTCc...........
FD544121       <-- AGATTTTCTCAGACATAGGATGCCAAGATTCATCATTCTCAACATGTCCA
FD982042       <-- AGATTTTCTCAGACATAGGATGCCAAGATTCGTCGTTCTCAACATGTCCA
FY450171       <-- AGATTTTCTCAGACATAGGATGCCAAGATTCATCATTCTCAACATGTCCA
FD542263       <-- AGATTTTCTCAGACATAGGATGCCAAGATTCATCGTTCTCAACATGTCCA
EY939242       <-- AGATTTTCTCAGACATAGGACGCCAAGATTCATCGTTCTCAACATGTCCA
FD568344       <-- AGATTT-CTCAGACATAGGATGCCAAGATTCATCGTTCTCAACATGTCCA
FD576565       <-- AGATTTT--CAGACATAGGATGCCGAGATTCATCGTTCTCAACATGTCCA
FD950198       <-- ........TCAGACATAGGATGCCAAGATTCATCGTTCTCAACATGTCCA
FD974694       --> ..................................................
FD529258       --> ..................................................
FD539791       --> ..................................................
FD975525       --> ..................................................
EX750757       --> ..................................................
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> ..................................................
FD945731       --> ..................................................
FD977690       --> ..................................................

               951    -   1001
UN21946        --> TGGTTCTGGTGGTGAGTTCTGTGGCTAATTCTCCAGCCATGGTAAGGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- ..................................................
FD544121       <-- TGGTTCTGGTGGTGAGTTCTGTGGCTAATTCTCCAGCCATGGTAAGGGAC
FD982042       <-- TGGTTCTGGTGGTGAGATCTGTGGCTAATTCTCCAGCCATGGTAAGGGAC
FY450171       <-- TGGTTCTGGTGGTGAGTTCTGTGGCTAATTCTCCAGCCATGGTAAGGGAC
FD542263       <-- TGGTTCTGGTGGTGAGTTCTGTGGCTAATTCTCCAGCCATGGTAAGGGAC
EY939242       <-- TGGTTCTGGTGGTGAGTTCTGTGGCTAATTCTCCAGCCATGGTAAGGGAC
FD568344       <-- TGGTTCTGGTGGTGAGTTCTGTGGCTAATTCTCCAGCCATGGTAAGGGAC
FD576565       <-- TGGTTCTGGTGGTGAGTTCTGTGGCTAATTCTCCAGCCATGGTAAGGGAC
FD950198       <-- TGGTTCTGGTGGTGAGTTCTGTGGCTAATTCTCCAGCCATGGTAAGGGAC
FD974694       --> ..................................................
FD529258       --> ..................................................
FD539791       --> ..................................................
FD975525       --> ..................................................
EX750757       --> ..................................................
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> ..................................................
FD945731       --> ..................................................
FD977690       --> ..................................................

               1001   -   1051
UN21946        --> CAGAATAGAGGAATGAAGAAGGTGACCCACCACACTGTTCAACCTCGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- ..................................................
FD544121       <-- CAGAATAGAGGAATGAAGAAGGTGACCCACCACACCGTTCAACCTCGGAT
FD982042       <-- CAGAATAGAGGAATGAAGAAGGTGACCCACCACACTGTTCAACCTCGGAT
FY450171       <-- CAGAATAGAGGAATGAAGAAGGTGACCCACCACACTGTTCAATCTCGGAT
FD542263       <-- CAGAATAGAGGAATGAAGAAGGTGACCCACCACACTGTTCAACCTCAGAT
EY939242       <-- CAGAATAGAGGAATGAAGAAGGTGACCCACCACACTGTTCAACCTCGGAT
FD568344       <-- CAGAATAGAGGAATGAAGAAGGTGACCCACCACACTGTTCAACCTCGGAT
FD576565       <-- CAGAATAGAGGAATGAAGAAGGTGACCCACCACACTGTTCAACCTCGGAT
FD950198       <-- CAGAATAGAGGAATGAAGAAGGTGACCCACCACACTGTTCAACCTCGGAT
FD974694       --> ..................................................
FD529258       --> ..................................................
FD539791       --> ..................................................
FD975525       --> ..................................................
EX750757       --> ..................................................
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> ..................................................
FD945731       --> ..................................................
FD977690       --> ..................................................

               1051   -   1101
UN21946        --> CATTTGAGAAGCTTCCATGTCCACAGTCATGGCCAAGAACAAAGAGAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- ..................................................
FD544121       <-- CATTTGAGAAGCTTCCATGTCCc...........................
FD982042       <-- CATTTGAGAAGCTTCCATGTCCACAGTCATGGCCAAGAACAAAGAGAGCC
FY450171       <-- CATTTGAGAAGCTACCATGTCCACAGTCATGGCCAAGAACAAAGAGAGCC
FD542263       <-- CATTTGAGAAGCTTCCATGTCCACAGTCATGGCCAAGAACGAAGAGAGCC
EY939242       <-- CATTTGAGAAGCTTCCATGTCCACAGTCATGGCCAAGAACAAAGAGAGCC
FD568344       <-- CATTTGAGAAGCTTCCATGTCCACAGTCATGGCCAAGAACAAAGAGAGCC
FD576565       <-- CATTTGAGAAGCTTCCATGTCCACAGTCATGGCCAAGAACAAAGAGAGCC
FD950198       <-- CATTTGAGAAGCTTCCATGTCCACAGTCATGGCCAAGAACAAAGAGAGCC
FD974694       --> ..................................................
FD529258       --> ..................................................
FD539791       --> ..................................................
FD975525       --> ..................................................
EX750757       --> ..................................................
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> ..................................................
FD945731       --> ..................................................
FD977690       --> ..................................................

               1101   -   1151
UN21946        --> CAGAACATGGTTCCTTGAGCAAACCAATAGAGAGGCCAAACGAGCCAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- ..................................................
FD544121       <-- ..................................................
FD982042       <-- CAGAACATGGTTCCTTGAGCAAACCAATAGAGAGGCCAAACGAGCCAACT
FY450171       <-- CAGAACATGGTTCCTTGAGCAAACCAATAGAGAGGCCAAACGAGCCAACT
FD542263       <-- CAGAACATGGTTCCTTGAGCAAACCAATAGAGAGGCCAAACAAGCCAGTT
EY939242       <-- CAGAACATGGTTCCTCGAGCAAACCAATAGAGAGGCCAAACGAGTCAACT
FD568344       <-- CAGAACATGGTTCCTTGAGCAAACCAATAGAGAGGCCAAACGAGCCAACT
FD576565       <-- CAGAACATGGTTCCTTGAGCAAACCAATAGAGAGGCCAAACGAGCCAACT
FD950198       <-- CAGAACATGGTTCCTTGAGCAAACCAATAGAGAGGCCAAACGAGCCAACT
FD974694       --> ..................................................
FD529258       --> ..................................................
FD539791       --> ..................................................
FD975525       --> ..................................................
EX750757       --> ..................................................
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> ..................................................
FD945731       --> ..................................................
FD977690       --> ..................................................

               1151   -   1201
UN21946        --> GTTGAGGTAAGCAGCACCAGCAGCCAACGCGAACACGATCGCTACGTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- ..................................................
FD544121       <-- ..................................................
FD982042       <-- GTTGAGGTAAGCAGCACCAGCAGCCAACGCGAACACGATCGCTACGTCTC
FY450171       <-- GTTGAGGTAAGCAGCACCAGCAGCCAACGCGAAGACGATCGCTACGTCTC
FD542263       <-- GTTAAGGTAAGCAGCACCAGCAGCCAACGCGAACACGATGGCTACGTCTC
EY939242       <-- GTTGAGGTAAGCAGCACCAGCAGCCAACGCGAACACGATCGCTACGTCTC
FD568344       <-- GTTGAGGTAAGCAGCCCCAGCAGCCAACGCGAACACGATCGCTACGTCTC
FD576565       <-- GTTGAGGTAAGCAGCACCAGCAGCCAACGCGAACACGATCGCTACGTCTC
FD950198       <-- GTTGAGGTAAGCAGCACCAGCAGCCAACGCGAACACGATCGCTACGTCTC
FD974694       --> ..................................................
FD529258       --> ..................................................
FD539791       --> ..................................................
FD975525       --> ..................................................
EX750757       --> ..................................................
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> ..................................................
FD945731       --> ..................................................
FD977690       --> ..................................................

               1201   -   1251
UN21946        --> TGACGACGTAACTCATCGATATCCACGGGTTCTTAACCCAGCAATGCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- ..................................................
FD544121       <-- ..................................................
FD982042       <-- TGACGACGTAACTCATCGATATCCATGGGTTCTTAACCCAGCAATG....
FY450171       <-- TGACGACGTAACTCATCGATATCCACGGGTTCTTAACCCAGCAATGCTTG
FD542263       <-- TGACGACATAGCTCATCGATATCCATGGGTTCTTAACCCAGCAATGCTTG
EY939242       <-- TGACGACGTAACTCATCGATATCCACGGGTTCTTAACCCAGCAATGCTTG
FD568344       <-- TGACGACGTAACTCATCGATATCCACGGGTTCTTAACCCAGCAATGCTTG
FD576565       <-- TGACGACGTAACTCATCGATATCCACGGGTTCTTAACCCAGCAATGCTTG
FD950198       <-- TGACGACGTAACTCATCGATATCCACGGGTTCTTAACCCAGCAATGCTTG
FD974694       --> ..................................................
FD529258       --> ..................................................
FD539791       --> ..................................................
FD975525       --> ..................................................
EX750757       --> ..................................................
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> ..................................................
FD945731       --> ..................................................
FD977690       --> ..................................................

               1251   -   1301
UN21946        --> GGTATAGCTGCTCTGATGTCAGCTAAGCTGAACGGAGGAGGAGCGCCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- ..................................................
FD544121       <-- ..................................................
FD982042       <-- ..................................................
FY450171       <-- GGTATAGCTGCTCTGATGTCAGCTAAGCTGAACGGAGGAGGAGCGCCTGG
FD542263       <-- GGTATAGCTGCTCTGATATCAGCTAAGCTGAACGGAGGAGGGGCGCCTGG
EY939242       <-- GGTATAGCTGCTCTGATGTCAGCTAAGCTGAACGGAGGAGGAGCGCCTGG
FD568344       <-- GGTATAGCTGCTCTGATGTCAGCTAAGCTGAACGGAGGAGGAGCGCCTGG
FD576565       <-- GGTATAGCTGCTCTGATGTCAGCTAAGCTGAACGGAGGAGGAGCGCCTGG
FD950198       <-- GGTATAGCTGCTCAGATGTCAGCTAAACTGAACGGAGGAGGAGCGCCTGG
FD974694       --> ..................................................
FD529258       --> ..................................................
FD539791       --> ..................................................
FD975525       --> ..................................................
EX750757       --> ..................................................
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> ..................................................
FD945731       --> ..................................................
FD977690       --> ..................................................

               1301   -   1351
UN21946        --> GTCGAATCTCTGCGTCTTGGGTGGTTCTTCCTCGATTGGTGGAGAGGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- ..................................................
FD544121       <-- ..................................................
FD982042       <-- ..................................................
FY450171       <-- GTCGAATCTCTGCGTCTTGGGTGGTTCTTCCTCGATTGGTGGAGAGGAGT
FD542263       <-- GTCGAATCTCTGCGTTTTGGGTGGTTCTTCCTCGGTTGGTGGAGAGGAGT
EY939242       <-- GTCGAATCTCTGCGTCTTGGGTGGTTCTTCCTCGATTGGTGGAGAGGAGT
FD568344       <-- GTCGAATCTCTGCGTCTTGGGTGGTTCTTCCTCGATTGGTGGAGAGGAGT
FD576565       <-- GTCGAATCTCTGCGTCTTGGGTGGTTCTTCCTCGATTGGTGGAGAGGAGT
FD950198       <-- GTCGAATCTCTGCGTCTTGGGTGGTTCTTCCTCGATTGGTGGAGAGGAGT
FD974694       --> ..................................................
FD529258       --> ..................................................
FD539791       --> ..................................................
FD975525       --> ..................................................
EX750757       --> ..................................................
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> ..................................................
FD945731       --> ..................................................
FD977690       --> ..................................................

               1351   -   1401
UN21946        --> CGACTGTTAGAGGCGTGCTCACATTCAACGCCCAGTTTCGAGAATTCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- ..................................................
FD544121       <-- ..................................................
FD982042       <-- ..................................................
FY450171       <-- CGACTGTTAGAGGCGTGCTCACATTCAACGCCCAGTTTCGAGAATTTAGA
FD542263       <-- CTACTGTTAGAGGCGTGCTCACATTCAACGCCCAGTTTCGAGAATTTAGA
EY939242       <-- CGACTGTTAGAGGCGTGCTCACATTCAACGCCCAGTTTCGAGAATTCAGA
FD568344       <-- CGACTGTTAGAGGCGTGCTCACATTCAACGCCCAGTTTCGAGAATTCAGA
FD576565       <-- CGACTGTTAGAGGCGTGCTCACATTCAACGCCCAGTTTCGAGAATTCAGA
FD950198       <-- CGACTGTTAGAGGCGTGCTCACATTCAACGCCCAGTTTCGAGAATTCAGA
FD974694       --> ..................................................
FD529258       --> ..................................................
FD539791       --> ..................................................
FD975525       --> ..................................................
EX750757       --> ..................................................
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> ..................................................
FD945731       --> ..................................................
FD977690       --> ..................................................

               1401   -   1451
UN21946        --> CGGAACCTGAGAGAAGAAGGGGGTTGTCTGAATTTGAAGGAGGTGGGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- ..................................................
FD544121       <-- ..................................................
FD982042       <-- ..................................................
FY450171       <-- CCGAACCTGAGAGAAGAAGGGGGTTGTCTGAATTTGAAGGAGGTGGGTTT
FD542263       <-- CCGAACCTGAGAGAAGAAGGGGGTTGTCTGAATTTGAAGGAGGTGGGTTT
EY939242       <-- CGGAACCTGAGAGAAGAAGGGGGTTGTCTGAATTTGAAGGAGGTGGGTTT
FD568344       <-- CGGAACCTGAGAGAAGAAGGGGGTTGTCTGAATTTGAAGGAGGTGGGTTT
FD576565       <-- CGGAACCTGAGAGAAGAAGGGGGTTGTCTGAATTTGAAGGAGGTGGGTTT
FD950198       <-- CGGAACCTGAGAGAAGAAGGGGGTTGTCTGAATTTGAAGGAGGTGGGTTT
FD974694       --> ..................................................
FD529258       --> ..................................................
FD539791       --> ..................................................
FD975525       --> ..................................................
EX750757       --> ..................................................
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> ..................................................
FD945731       --> ..................................................
FD977690       --> ..................................................

               1451   -   1501
UN21946        --> GTTGTTGTAAGAGAGGGGAGTGGATCTGGGTGTGGTGTAGATTCTGGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- ..................................................
FD544121       <-- ..................................................
FD982042       <-- ..................................................
FY450171       <-- GTTGTTGTAAGAGAGGGGAGTGGATCTGGGTGTGGTGTAGATTCTGGGGA
FD542263       <-- GTTGTTGTAAGTGAGGc.................................
EY939242       <-- GTTGTTGTAAGAGAGGGGAGTGGATCTGGGTGTGGTGTAGATTCTGGGGA
FD568344       <-- GTTGTTGTAAGAGAGGGGAGTGGATCTGGGTGTGGTGTAGATTCTGGGGA
FD576565       <-- GTTGTTGTAAGAGAGGGGAGTGGATCTGGGTGTGGTGTAGATTCTGGGGA
FD950198       <-- GTTGTTGTAAGAGAGGGGAGTGGATCTGGGTGTGGTGTAGATTCTGGGGA
FD974694       --> ..................................................
FD529258       --> ..................................................
FD539791       --> ..................................................
FD975525       --> ..................................................
EX750757       --> ..................................................
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> ..................................................
FD945731       --> ..................................................
FD977690       --> ..................................................

               1501   -   1551
UN21946        --> GTGGTCTCTTTCCACATTCTGATAAGACCAAGTTCGCCATTACCAGAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- ..................................................
FD544121       <-- ..................................................
FD982042       <-- ..................................................
FY450171       <-- GTGGTCTTATTCCACATTCTGATAAGACCAAGTTCGCCATTACCAGAAGC
FD542263       <-- ..................................................
EY939242       <-- GTGGTCTCTTTCCACATTCTGATAAGACCAAGTTCGCCATTACCAGAAGC
FD568344       <-- GTGGTCTCTTTCCACATTCTGATAAGACCAAGTTCGCCATTACCAGAAGC
FD576565       <-- GTGGTCTCTTTCCACATTCTGATAAGACCAAGTTCGCCATTACCAGAAGC
FD950198       <-- GTGGTCTCTTTCCACATTCTGATAAGACCAAGTTCGCCATTACCAGAAGC
FD974694       --> ..................................................
FD529258       --> ..................................................
FD539791       --> ..................................................
FD975525       --> ..................................................
EX750757       --> ..................................................
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> ..................................................
FD945731       --> ..................................................
FD977690       --> ..................................................

               1551   -   1601
UN21946        --> TCTGTCTCTGTTTCTCTCTCAGAAGAAAGAGAAAAGACTCTTTTTTATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- ..................................................
FD544121       <-- ..................................................
FD982042       <-- ..................................................
FY450171       <-- TCTGTCTCTGTTTCTCTCTCAG............................
FD542263       <-- ..................................................
EY939242       <-- TCTGT.............................................
FD568344       <-- TCTGTCTCTGTTTCTCTCTCAGAAGAAAGAGAAAAGACTCTTTTTTATTT
FD576565       <-- TCTGTCTCTGTTTCTCTCTCAGAAGAAAGAGAAAAGACTCTTTTTTATTT
FD950198       <-- TCTGTCTCTGTTTCTCTCTCcc............................
FD974694       --> ..................................................
FD529258       --> ..................................................
FD539791       --> ..................................................
FD975525       --> ..................................................
EX750757       --> ..................................................
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> ..................................................
FD945731       --> ..................................................
FD977690       --> ..................................................

               1601   -   1651
UN21946        --> CTCTCTCTGTTAGTTATTAAATGAGAGGTTAATAGAGAGAGAATGGAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558868       <-- ..................................................
FD532925       <-- ..................................................
FD544121       <-- ..................................................
FD982042       <-- ..................................................
FY450171       <-- ..................................................
FD542263       <-- ..................................................
EY939242       <-- ..................................................
FD568344       <-- CTCTCCCTGTTAGTTATTAAATGAGAGGTTAATAGAGAGAGAATGGAGCA
FD576565       <-- CTCTCTCTGTTAGTTATTAAATGAGAGGTTcc..................
FD950198       <-- ..................................................
FD974694       --> ..................................................
FD529258       --> ..................................................
FD539791       --> ..................................................
FD975525       --> ..................................................
EX750757       --> ..................................................
EY935215       --> ..................................................
FD545644       --> ..................................................
FD581040       --> ..................................................
FD945731       --> ..................................................
FD977690       --> ..................................................

               1651   -   1701
UN21946        --> AGCCC
                   ~~~~~
FD558868       <-- .....
FD532925       <-- .....
FD544121       <-- .....
FD982042       <-- .....
FY450171       <-- .....
FD542263       <-- .....
EY939242       <-- .....
FD568344       <-- AGCCC
FD576565       <-- .....
FD950198       <-- .....
FD974694       --> .....
FD529258       --> .....
FD539791       --> .....
FD975525       --> .....
EX750757       --> .....
EY935215       --> .....
FD545644       --> .....
FD581040       --> .....
FD945731       --> .....
FD977690       --> .....