1      -     51
UN21972        --> ATTCCAAAGTATAAATTTTATTATATTGGAGGGGCCAACTTATAAAAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- ..................................................
FY432838       <-- ..................................................
EY938342       <-- ..................................................
EY925260       <-- ..................................................
FY454210       <-- ..................................................
FY433119       <-- ..................................................
EV570187       <-- ..................................................
EV566304       <-- ..................................................
EY905487       <-- ..................................................
EX758165       <-- ..................................................
EV567765       <-- ..................................................
EY931769       <-- ..................................................
EV571468       --> ATTCCAAAGTATAAATTTTATTATATTGGAGGGGCCAACTTATAAAAAAC
FD968500       --> ..gCCAAAGTATAAATTTTATTATATTGGAGGGGCCAACTTATAAAAAAC
EV540646       --> .....AAAGTATAGATTTTATTATATTGGAGGGGCCAACTTATAAAAAAC
EV542209       --> ........................ATTGGAGGGGCCAACTTATAAAAA-C
EX760524       --> ........................ATTGGAGGGGCCAACTTATAAAAAAC
EX766379       --> ........................ATTGGAGGGGCCAACTTATAAAAAAC
EY901913       --> ........................ATTGGAGGGGCCAACTTATAAAAAAC
FD537741       --> ........................ATTGGAGGGGCCAACTTATAAAAAAC
FD538688       --> ........................ATTGGAGGGGCCAACTTATAAAAAAC
FD943873       --> ........................ATTGGAGGGGCCAACTTATAAAAAAC
FD945123       --> ........................ATTGGAGGGGCCAACTTATAAAAAAC
FD977607       --> ........................ATTGGAGGGGCCAACTTATAAAAAAC
EX766797       --> ...........................................AAAAAAC
FD544647       --> ...........................................cAAAAAA
EV572637       --> ................................................gC
FD976003       --> ..................................................
FY441336       --> ..................................................

               51     -    101
UN21972        --> ACGAAAAAACCATGTCCATATATAACAGTACCTTACAGAACACGCGACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- ..................................................
FY432838       <-- ..................................................
EY938342       <-- ..................................................
EY925260       <-- ..................................................
FY454210       <-- ..................................................
FY433119       <-- ..................................................
EV570187       <-- ..................................................
EV566304       <-- ..................................................
EY905487       <-- ..................................................
EX758165       <-- ..................................................
EV567765       <-- ..................................................
EY931769       <-- ..................................................
EV571468       --> ACGAAAAAACCATGTCCATATATAACAGTACCTTACAGAACACGCGACCC
FD968500       --> ACGAAAAAACCATGTCCATATATAACAGTACCTTACAGAACACGCGACCC
EV540646       --> ACGAAAAAACCATGTCCATATATAACAGTACCTTACAGAACACGCGACCC
EV542209       --> ACGAAAAAACCATGTCCATATATAACAGTACCTTACAGAACACGCGACCC
EX760524       --> ACGAAAAAACCATGTCCATATATAACAGTACCTTACAGAACACGCGACCC
EX766379       --> ACGAAAAAACCATGTCCATATATAACAGTACCTTACAGAACACGCGACCC
EY901913       --> ACGAAAAAACCATGTCCATATATAACAGTACCTTACAGAACACGCGACCC
FD537741       --> ACGAAAAAACCATGTCCATATATAACAGTACCTTACAGAACACGCGACCC
FD538688       --> ACGAAAAAACCATGTCCATATATAACAGTACCTTACAGAACACGCGACCC
FD943873       --> ACGAAAAAACCATGTCCATATATAACAGTACCTTACAGAACACGCGACCC
FD945123       --> ACGAAAAAACCATGTCCATATATAACAGTACCTTACAGAACACGCGACCC
FD977607       --> ACGAAAAAACCATGTCCATATATAACAGTACCTTACAGAACACGCGACCC
EX766797       --> ACGAAAAAACCATGTCCATATATAACAGTACCTTACAGAACACGCGACCC
FD544647       --> ACGAAAAAACCATGTCCATATATAACAGTACCTTACAGAACACGCGACCC
EV572637       --> ACGAAAAAACCATGTCCATATATAACAGTACCTTACAGAACACGCGACCC
FD976003       --> ..GAAAAAACCATGTCCATATATAACAGTACCTTACAGAACACGCGACCC
FY441336       --> .............GTCCATATATAACAGTACCTTACAGAACACGCGACCC

               101    -    151
UN21972        --> A-GAGTTTTGTGAAACCC-AACACGGAAGGTAAACAGATTCAATAAA-GA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- ..................................................  Raphanus sativus cv GSK3-1
FY432838       <-- ..................................................  Raphanus sativus cv GSK3-1
EY938342       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY925260       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY454210       <-- ..................................................  Raphanus sativus cv GSK3-1
FY433119       <-- ..................................................  Raphanus sativus cv GSK3-1
EV570187       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV566304       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY905487       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758165       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567765       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY931769       <-- ..................................................  Raphanus sativus var. oleiformis
EV571468       --> A-GAGTTTTGTGAAACCC-AACACGGAAGGTAAACAGATTCAATAAA-GA  Raphanus raphanistrum subsp. landra
FD968500       --> A-GAGTTTTGTGAAACCC-AACACGGAAGGTAAGAATATTCAATAAAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540646       --> A-GAGTTTTGTGAAACCC-AACACGGAAGGTAAAAATATTCAATAAAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542209       --> A-GAGTTTTGTGAAACCCCAACACGGAAGGTAAACAGATTCAATAAA-GA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760524       --> A-GAGTTTTGTGAGACCCCAACACGGAAGGGAAACAGATTCAATAAA-GA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX766379       --> A-GAGTTTTGTGAAACCC-AACACGGAAGGTAAACAGATTCAATAAAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901913       --> A-GAGTTTTGTGAAACCC-AACACGGAAGGTAAAAATATTCAATAAAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537741       --> A-GAGTTTTGTGAAACCC-AACACGGAAGGTAAACAGATTCAATAAA-GA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538688       --> A-GAGTTTTGTGAAACCC-AACACGGAAGGTAAACAGATTCAATAAA-GA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD943873       --> A-GAGTTTTGTGAAACCC-AACACGGAAGGTAAACAGATTCAATAAA-GA  Raphanus sativus cv Early Scarlet Globe
FD945123       --> A-GAGTTTTGTGAAACCC-AACGCGGAAGGTAAACAGATTCAATAAA-GA  Raphanus sativus cv Early Scarlet Globe
FD977607       --> A-GAGTTTTGTGAAACCC-AACACGGAAGGTAAACAGATTCAATAAAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766797       --> A-AAGTTTTGTGAAACCC-AACACGGAAGGTAAACAGATTCAATAAAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544647       --> A-AAGTTTTGTGAAACCC-AACACGGAAGGTAAACAGATTCAATAAAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572637       --> A-GAGTTTTGTGAAACCC-AACACGGAAGGTAAACAGATTCAATAAA-GA  Raphanus raphanistrum subsp. landra
FD976003       --> A-GAGTTTTGTGAAACCC-AACACGGAAGGTAAACAGATTCAATAAAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY441336       --> AAGAGTTTTGTGAAACCC-AACACGGAAGGTAAACAGATTCAATAAAAGA  Raphanus sativus cv GSK3-1

               151    -    201
UN21972        --> AAGGGAATGGAATTTAAAGACGAAACCATCACTTCACATTAACATTAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- ........tggATTTAAAGACGAAACCATCACTTCACATTAACATTAAAT
FY432838       <-- ..................................................
EY938342       <-- ..................................................
EY925260       <-- ..................................................
FY454210       <-- ..................................................
FY433119       <-- ..................................................
EV570187       <-- ..................................................
EV566304       <-- ..................................................
EY905487       <-- ..................................................
EX758165       <-- ..................................................
EV567765       <-- ..................................................
EY931769       <-- ..................................................
EV571468       --> AAGGGAATGGAATTTAAAGACGAAACCATCACTTCACATTAA------AT
FD968500       --> AAGGGAATGGAATTTAAAGACGAAACCATCACTTCACATTAACATTAAAT
EV540646       --> AAGGGAATGGAATTTAAAGACGAAACCATCACTTCACATTAACATTAAAT
EV542209       --> AAGGGAATGGAATTTAAAGACGAAACCATCACTTCGCAT-AACATTAAAT
EX760524       --> AAGGGAATGGAATTTAAAGACGAAACCATCACTTCGCAT-AACATTAAAT
EX766379       --> AAGGGAATGGAATTTAAAGACGAAACCATCACTTCACATTAACATTAAAT
EY901913       --> AAGGGAATGGAATTTAAAGACAAAACCATCACTTCACATTAACATTAAAT
FD537741       --> AAGGGAATGGAATTTAAAGACGAAACCATCACTTCGCAT-AACATTAAAT
FD538688       --> AAGGGAATGGAATTTAAAGACGAAACCATCACTTCGCAT-AACATTAAAT
FD943873       --> AAGGGAATGGAATTTAAAGACGAAACCATCACTTCACATTAA------AT
FD945123       --> AAGGGAATGGAATTTAAAGACGAAACCATCACTTCACATTAA------AT
FD977607       --> AAGGGAATGGAATTTAAAGACGAAACCATCACTTCACATTAACATTAAAT
EX766797       --> AAGGGAATGGAATTTAAAGACGAAACCATCACTTCACATTAACATTAAAT
FD544647       --> AAGGGAATGGAATTTAAAGACGAAACCATCACTTCACATTAACATTAAAT
EV572637       --> AAGGGAATGGAATTTAAAGACGAAACCATCACTTCACATTAACATTAAAT
FD976003       --> AAGGGAATGGAATTTAAAGACGAAACCATCACTTCACATTAACATTAAAT
FY441336       --> AAGGGAATGGAATTTAAAGACGAAACCATCACTTCACATTAACATTAAAT

               201    -    251
UN21972        --> ACGAACTTCGGTTTTCTTCTTTTAAGTCGCCGGTTTCGAGGAATCTCCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- ACGAACTTCGGTTTTCTTCTTTTAAGTCGCCGGTTTCGAGGAATCTCCGG  Raphanus sativus cv GSK3-1
FY432838       <-- ..................................................  Raphanus sativus cv GSK3-1
EY938342       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY925260       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY454210       <-- ..................................................  Raphanus sativus cv GSK3-1
FY433119       <-- ..................................................  Raphanus sativus cv GSK3-1
EV570187       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV566304       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY905487       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758165       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567765       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY931769       <-- ..................................................  Raphanus sativus var. oleiformis
EV571468       --> ACGAACTTCGGTTTTCTTCTTTTAAGTCGCCGGTTTCGAGGAATCTCCGG  Raphanus raphanistrum subsp. landra
FD968500       --> ACGAACTTCGGTTTTCTTCTTTTAAGTTGCCGATTTCGAGGAATCTCCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540646       --> ACGAACTTCGGTTTTCTTCTTTTAAGTTGCCGATTTCGAGGAATCTCCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542209       --> ACGAACTTCGGTTTTCTTCTTTTAAGTCGCCGGTTTCGAGGAATCTCCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760524       --> ACGAACTTCGGTTTTCTTCTTTTAAGTCGCCGGTTTCGAGGAATCTCCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX766379       --> ACGAACTTCGGTTTTCTTCTTTTAAGTCGCCGATTTCGAGGAATCTCCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901913       --> ACGAACTTCGGTTTTCTTCTTTTAAGTTGCCGATTTCGAGGAATCTCCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537741       --> ACGAACTTCGGTTTTCTTCTTTTAAGTCGCCGGTTTCGAGGAATCTCCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538688       --> ACGAACTTCGGTTTTCTTCTTTTAAGTCGCCGGTTTCGAGGAATCTCCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD943873       --> ACGAACTTCGGTTTTCTTCTTTTAAGTCGCCGGTTTCGAGGAATCTCCGG  Raphanus sativus cv Early Scarlet Globe
FD945123       --> ACGGACTTCGGTTTTCTTCTTTTAAGTCGCCGGTTTCGAGGAATCTCCGG  Raphanus sativus cv Early Scarlet Globe
FD977607       --> ACGAACTTCGGTTTTCTTCTTTTAAGTCGCCGATTTCGAGGAATCTCCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766797       --> ACGAACTTCGGTTTTCTTCTTTTAAGTCGCCGATTTCGAGGAATCTCCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544647       --> ACGAACTTCGGTTTTCTTCTTTTAAGTCGCCGATTTCGAGGAATCTCCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572637       --> ACGAACTTCGGTTTTCTTCTTTTAAGTCGCCGGTTTCGAGGAATCTCCGG  Raphanus raphanistrum subsp. landra
FD976003       --> ACGAACTTCGGTTTTCTTCTTT-AAGTCGCCGATTTCGAGGAATCTCCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY441336       --> ACGAACTTCGGTTTTCTTCTTTTAAGTCGCCGGTTTCGAGGAATCTCCGG  Raphanus sativus cv GSK3-1

               251    -    301
UN21972        --> CGTCAAGTTTCACGGCGGAATTTTCGTGGCGCAAGCTATTTTCCCTAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- CGTCAAGTTTCACGGCGGAATTTTCGTGGCGCAAGCTATTTTCCCTAGAG
FY432838       <-- ............................GCGCAAGCTATTTTCCCTAGAG
EY938342       <-- ..................................................
EY925260       <-- ..................................................
FY454210       <-- ..................................................
FY433119       <-- ..................................................
EV570187       <-- ..................................................
EV566304       <-- ..................................................
EY905487       <-- ..................................................
EX758165       <-- ..................................................
EV567765       <-- ..................................................
EY931769       <-- ..................................................
EV571468       --> CGTCAAGTTTCACGGCGGAATTTTCGTGGCGCAAGCTATTTTCCCTAGAG
FD968500       --> CGTCAAGTTTCACGGGGGAATTTTCATGGCGCAAGCTATTTTCCCTAGAG
EV540646       --> CGTCAAGTTTCACGGTGGAATTTTCGTGGCGCAAGCTATTTTCCCTAGAG
EV542209       --> CGTCAAGTTTCACGGCGGAATTTTCGTGGCGCAAGCTATTTTCCCTAGGG
EX760524       --> CGTCAAGTTTCACGGCGGAATTTTCGTGGCGCAAGCTATTTTCCCTAAAG
EX766379       --> CGTCAAGTTTCACGGCGGAATTTTCGTGGCGCAAGCTATTTTCCCTAGAG
EY901913       --> CGTCAAGTTTCACGGTGGAATTTTCGTGGCGCAAGCTATTTTCCCTAGAG
FD537741       --> CGTCAAGTTTCACGGCGGAATTTTCGTGGCGCAAGTTATTTTCCCTAGAG
FD538688       --> CGTCAAGTTTCACGGCGGAATTTTCGTGGCGCAAGCTATTTTCCCTAGAG
FD943873       --> CGTCAAGTTTCACGGCGGAATTTTCGTGGCGCAAGCTATTTTCCCTAGAG
FD945123       --> CGTCAAGTTTCACGGCGGAATTTTCGTGGCGCAAGCTATTTTCCCTAGAG
FD977607       --> CGTCAAGTTTCACGGCGGAATTTTCGTGGCGCAAGCTATTTTCC-TAGAG
EX766797       --> CGTCAAGTTTCACGGCGGAATTTTCGTGGCGCAAGCTATTTTCCCTAGAG
FD544647       --> CGTCAAGTTTCACGGCGGAATTTTCGTGGCGCAAGCTATTTTCCCTAGAG
EV572637       --> CGTCAAGTTTCACGGCGGAATTTTCGTGGCGCAAGCTATTTTCCCTAGAG
FD976003       --> CGTCAAGTTTCACGGCGGAATTTTCGTGGCGCAAGCTATTTTCCCTAGAG
FY441336       --> CGTCAAGTTTCACGGCGGAATTTTCGTGGCGCAAGCTATTTTCCCTAGAG

               301    -    351
UN21972        --> TATGGTTTCTTAGAACCC-TGGAAAATGTTTCCGAGCTTCCTCAACCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- TATGGTTTCTTAGAACCC-TGGAAAATGTTTCCGAGCTTCCTCAACCCTC
FY432838       <-- TATGGTTTCTTAGAACCCCTGGAAAATGTTTCCGAGCTTCCTCAACCCTC
EY938342       <-- ........CTTAGAACCC-TGGAAAATGTTTCCGAGCTTCCTCAACCCTC
EY925260       <-- ...........................................AACCCTC
FY454210       <-- ..................................................
FY433119       <-- ..................................................
EV570187       <-- ..................................................
EV566304       <-- ..................................................
EY905487       <-- ..................................................
EX758165       <-- ..................................................
EV567765       <-- ..................................................
EY931769       <-- ..................................................
EV571468       --> TAGGGTTTCTTAGAACCC-TGGAAAATGTTTCCGAGCTTCCTCAACCCTC
FD968500       --> TATGGTTTCTTAAAGCCC-TGGAAAATGTTTCCGAACTTCCTCAACCCTC
EV540646       --> TATGGTTTCTTAGAGCCC-TGGAAAATGTTTCCGAGCTTCCTCAACCCTC
EV542209       --> TATGGTTTCTTAGAACCC-TGGAAAATGTTTCCGAGCTTCCTCAACCCTC
EX760524       --> TATGGTTTCTTAAAACCC-TGGAAAATGTTTCCGAGCTTCCTCAACCCTC
EX766379       --> TATGGTTTCTTAGAACCC-TGGAAAATGTTTCCGAGCTTCCTCAACCCTC
EY901913       --> TATGGTTTCTTAGAGCCC-TGGAAAATGTTTCCGAGCTTCCTCAACCCTC
FD537741       --> TATGGTTTCTTAGAACCC-TGGAAAATGTTTCCGAGCTTCCTCAACCCTC
FD538688       --> TATGGTTTCTTAAAACCC-TGGAAAATGTTTCCGAGCTTCCTCAACCCTC
FD943873       --> TAGGGTTTCTTAGAACCC-TG-AAAATGTTTCCGAGCTTCCTCAACCCTC
FD945123       --> TAGGGTTTCTTAGAACCC-TGGAAAATGTTTCCGAGCTTCCTCAACCCTC
FD977607       --> TATGGTTTCTTAGAACCC-TGGAAAATGTTTCCGAGCTTCCTCAACCCTC
EX766797       --> TATGGTTTCTTAAAACCC-TGGAAAATGTTTCCGAGCTTCCTCAACCCTC
FD544647       --> TATGGTTTCTTAAAACCC-TGGAAAATGTTTCCAAGCTTCCTCAACCCTC
EV572637       --> TATGGTTTCTTAGAACCC-TGGAAAATGTTTCCGAGCTTCCTCAACCCTC
FD976003       --> TATGGTTTCTTAGAACCC-TGGAAAATGTTTCCGAGCTTCCTCAACCCTC
FY441336       --> TATGGTTTCTTAGAACCC-TGGAAAATGTTTCCGAGCTTCCTCAACCCTC

               351    -    401
UN21972        --> TTGCTCTAGTTCGAAGAACATCTTTTGAAACACTCGGATCTTTAAGCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- TTGCTCTAGTTCGAAGAACATCTTTTGATACACTCGGATCTTTAAGCACC  Raphanus sativus cv GSK3-1
FY432838       <-- TTGCTCTAGTTCGAAGAACATCTTTTGATACACTCGGATCTTTAAGCACC  Raphanus sativus cv GSK3-1
EY938342       <-- TTGCTCTAGTTCGAAGAACATCTTTTGAAACACTCGGATCTTTAAGCACC  Raphanus sativus cv Early Scarlet Globe
EY925260       <-- TTGCTCTAGTTCGGAGAACATCTTTTGAACCACTCGGATCTTTAAGCACC  Raphanus raphanistrum subsp. landra
FY454210       <-- ..................................................  Raphanus sativus cv GSK3-1
FY433119       <-- ..................................................  Raphanus sativus cv GSK3-1
EV570187       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV566304       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY905487       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758165       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567765       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY931769       <-- ..................................................  Raphanus sativus var. oleiformis
EV571468       --> TTGCTCTAGTTCGAAGAACATCTTTTGAAACACTCGGATGTTTAAGCACC  Raphanus raphanistrum subsp. landra
FD968500       --> TTGCTCTAGTTCGAAGAACATCTTTTGAAACACTTGGATCTTTAAGCACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540646       --> TTGCTCTAGTTCGAAGAACATCTTTTGAAACACTTGGATCTTTAAGCACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542209       --> TTGCTCTAGTTCGAAGAACATCTTTTGAAACACTCGGATCTTTAAGCACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760524       --> TTGCTCTAGTTCGAAAAACATCTTTTGAAACACTCGGATCTTTAAGCACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX766379       --> TTGCTCTAGTTCGAAGAACATCTTTTGAAACACTTGGATCTTTAAGCACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901913       --> TTGCTCTAGTTCGAAGAACATCTTTTGAAACACTTGGATCTTTAAGCACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537741       --> TTGCTCTAGTTCGAAGAACATCTTTTGAAACACTTGGATCTTTAAGCACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538688       --> TTGCTCTAGTTCGAAAAACATCTTTCGAAACACTTGGATCTTTAAGCACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD943873       --> TTGCTCTAGTTCGAAGAACATCTTTTGAAACACTCGGATCTTTAAGCACC  Raphanus sativus cv Early Scarlet Globe
FD945123       --> TTGCTCTAGTTCGAAGAACATCTTTTGAAACACTCGGATCTTTAAGCACC  Raphanus sativus cv Early Scarlet Globe
FD977607       --> TTGCTCTAGTTCGAAGAACATCTTTTGAAACACTTGGATCTTTAAGCACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766797       --> TTGCTCTAGTTCGAAAAACATCTTTTGAAACACTTGGATCTTTAAGCACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544647       --> TTGCTCTAGTTCGAAAAACATCTTTTGAAACACTTGGATCTTTAAGCACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572637       --> TTGCTCTAATTCGAAGAACATCTTTTGAAACACTCGGATCTTTAAGCACC  Raphanus raphanistrum subsp. landra
FD976003       --> TTGCTCTAGTTCAAAGAACATCTTTTGAAACACTTGGATCTTTAAGCACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY441336       --> TTGCTCTAGTTCGAAGAACATCTTTTGATACACTCGGATCTTTAAGCACC  Raphanus sativus cv GSK3-1

               401    -    451
UN21972        --> GCTTGGCAGACACGAGATAAGGTTGATTCGATGTCAAGCACGTTGATTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- GCTTGGCAGACACGAGATAAGGTTGATTCGATGTCAAGCACGTTGATTTG
FY432838       <-- GCTTGGCAGACACGAGATAAGGTTGATTCGATGTCAAGCACGTTGATTTG
EY938342       <-- GCTTGGCAGACACGAGGTAAGGTTGATTCGATGTCAAGCACGTTGATTTG
EY925260       <-- GCTTGGCAGACACGAGATAAGGT-GATTCGATGTCAAGCACGTTGATTTG
FY454210       <-- .CTTGGCAGACACGAGATAAGGTTGATTCGATGTCAAGCACGTTGATTTG
FY433119       <-- .............GAGATAAGGTGATTTCGATGTCAAGCACGTTGATTTG
EV570187       <-- ..........................TTCGATGTCAAGCACGTTGAGTTG
EV566304       <-- ..................................................
EY905487       <-- ..................................................
EX758165       <-- ..................................................
EV567765       <-- ..................................................
EY931769       <-- ..................................................
EV571468       --> GCTTGGCAGACACGAGATAGGGTTGATTCGATGTCAAGCACGTTGATTTG
FD968500       --> GCTTGGCAGACACGA...................................
EV540646       --> GCTTGGCAGACACGAGATAAGGTTGATTCGATGTCAAGCACGTTGATTTG
EV542209       --> GCTTGGCAGACACGAGATAAGGTTGATTCGATGTCAAGCACGTTGATTTG
EX760524       --> GCTTGGCAAACACGA...................................
EX766379       --> GCTTGGCAGACACGAGATAAGGTTGATTCGATGTCAAGAACGTTGATTTG
EY901913       --> GCTTGGCAGACACGAGATAAGGTTGATTCGATGTCAAGCACGTTGATTTG
FD537741       --> GCTTGGCAGACACGAGATAAGGTTGATTCGATGTCAAGCACGTTGATTTG
FD538688       --> GCTTGGCAGACACGAGATAAGGTTGATTCGATGTCAAGCACGTTGATTTG
FD943873       --> GCTTGGCAGACACGAGATAAGGTTGATTCGATGTCAAGCACGTTGATTTG
FD945123       --> GCTTGGCAGACACGAGATAAGGTTGATTCGATGTCAAGCACGTTGATTTG
FD977607       --> GCTTGGCAGACACGAGATAAGGTTGATTCGATGTCAAGCACGTTGATTTG
EX766797       --> GCTTGGCAAACACGAAATAAGGTTGATTCGATGTCAAGCACGTTGATTTG
FD544647       --> GCTTGGAAAACAC.....................................
EV572637       --> GCTTGGCAAACACGAGATAAGGTTGATTCGATGTCAAGCACGTTGATTTG
FD976003       --> GCTTGGCAGACACGAGATAAGGTTGATTCGATGTCAAGCACGTTGATTTG
FY441336       --> GCTTGGCAGACACGAGATAAGGTTGATTCGATGTCAAGCACGTTGATTTG

               451    -    501
UN21972        --> CCAAAGTGACTGAAGCATTGCATCTTTTTTAGCTTCAATCGCCTTCTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- CCAAAGTGACTGAAGCATTGCATCTTTTTTAGCTTCAATCGCCTTCTGAA
FY432838       <-- CCAAAGTGACTGAAGCATTGCATCTTTTTTAGCTTCAATCGCCTTCTGAA
EY938342       <-- CCAAAGTGACTGAAGCATTGCATCTTTTTTAGCTTCAATCGCCTTCTGAA
EY925260       <-- CCAAAGGGACTGAAGCATTGCATCTTTTTTAGCTTCAATCGCTTTCTGAA
FY454210       <-- CCAAAGTGACTGAAGCATTGCATCTTTTTTAGCTTCAATCGCCTTCTGAA
FY433119       <-- CCAAAGTGACTGAAGCATTGCATCTTTTTTAGCTTCAATCGCCTTCTGAA
EV570187       <-- CCAAAGGGACTGAAGCATTGCATCTTTTTTAGCT-CAATCGC-TTCTGAA
EV566304       <-- ..................................................
EY905487       <-- ..................................................
EX758165       <-- ..................................................
EV567765       <-- ..................................................
EY931769       <-- ..................................................
EV571468       --> CCAAAGTGACTGAAGCATTGCATCTTTTTTAGCTTCAATCGCCTTCTGAA
FD968500       --> ..................................................
EV540646       --> CCAAAGTGACTGAAGCATTGCATCTTTTTTAGCTTCAATCGCCTTCTGAA
EV542209       --> CCAAAGGGACTGAAGCATTGCATCTTTTTTAGCTTCAATCGCCTTCTGAA
EX760524       --> ..................................................
EX766379       --> CCAAAGTGACTGAAGCATTGCATCTTTTTTAGCTTCAATCGCCTTCTGAA
EY901913       --> CCAAAGGGACTGAAGCATTGCATCTTTTTTAGCTTCAATGGCCTTCTGAA
FD537741       --> CCAAAGGGACTGAAGCATTGCATCCTTTTTAGCCTCAATCGCCTTCTGAA
FD538688       --> CCAAAGGGACTGAAGCATTGCATCCTTTTTAGCTTCAATCGCCTTCTGAA
FD943873       --> CCAAAGTGACTGAAGCATTGCATCTTTTTTAGCTTCAATCGCCTTCTGAA
FD945123       --> CCAAAGTGACTGAAGCATTGCATCTTTTTTAGCTTCAATCGCCTTCTGAA
FD977607       --> CCAAAGTGACTGAAGCATTGCATCTTTTTTAGCTTCAATCGCCTTCTGAA
EX766797       --> CCAAAGTGACTGAAGCATTGCATCTTTTTTTGCTTCAATCGCCTTCTGAA
FD544647       --> ..................................................
EV572637       --> CCAAAGGGACTGAAGCATTGCATCTTTTTTAGCTTCAATCGCCTTCTGAA
FD976003       --> CCAAAGTGACTGAAGCATTGCATCTTTTTTAGCTTCAATCGCCTTCTGAA
FY441336       --> CCAAAGTGACTGAAGCATTGCATCTTTTTTAGCTTCAATCGCCTTCTGAA

               501    -    551
UN21972        --> TATGCTCCTCTTTGTTCTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- TATGCTCCTCTTTGTTCTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
FY432838       <-- TATGCTCCTCTTTGTTCTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
EY938342       <-- TATGCTCCTCTTTGTTCTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
EY925260       <-- TATGCTCCTCTTTGTTCTCTCCTTGGTTCAGCTTGCTCACTTCGTCCTGC
FY454210       <-- TATGCTCCTCTTTGTTCTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
FY433119       <-- TATGCTCCTCTTTGTTCTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
EV570187       <-- TATGCTCCTCTTTGT-CTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
EV566304       <-- .................................................C
EY905487       <-- ..................................................
EX758165       <-- ..................................................
EV567765       <-- ..................................................
EY931769       <-- ..................................................
EV571468       --> TATGCTCCTCTCTGTTCTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
FD968500       --> ..................................................
EV540646       --> TATGCTCATCTTTGTTCTCTCCTTGGTTCAGCTTGCTCACTTCGTCCTGC
EV542209       --> TATGCTCCTCTTTGTTCTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
EX760524       --> ..................................................
EX766379       --> TATGCTCCTCTTTATTCTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
EY901913       --> TATGCTCCTCTTTGTTCCCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
FD537741       --> TATGCTCCTCTTTGTTCTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
FD538688       --> TATGCTCCTCTTTGTTCTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
FD943873       --> TATGCTCCTCTTTGTTCTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
FD945123       --> TATGCTCCTCTTTGTTCTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
FD977607       --> TATGCTCCTCTTTGTTCTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
EX766797       --> TATGCTCCTCTTTGTTCTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
FD544647       --> ..................................................
EV572637       --> TATGCTCCTCTTTGTTCTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
FD976003       --> TATGCTCCTCTTTGTTCTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC
FY441336       --> TATGCTCCTCTTTGTTCTCTCCCTGGTTCAGCTTGCTCACTTCGTCCTGC

               551    -    601
UN21972        --> AACACCAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- AACACCAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
FY432838       <-- AACACCAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
EY938342       <-- AACACCAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
EY925260       <-- AACACTAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
FY454210       <-- AACACCAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
FY433119       <-- AACACCAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
EV570187       <-- AACACCAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
EV566304       <-- AACACCAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
EY905487       <-- ...................CACCAGAAGCAGCCATGACTTGAAATTTGAT
EX758165       <-- ............................CAGCCATGACTTGAGATTTGAT
EV567765       <-- ..................................................
EY931769       <-- ..................................................
EV571468       --> AACACCAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
FD968500       --> ..................................................
EV540646       --> AACACTAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
EV542209       --> AACACTAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
EX760524       --> ..................................................
EX766379       --> AACACCAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
EY901913       --> AAC...............................................
FD537741       --> AACACCAGTAACGAAACCGCACC...........................
FD538688       --> AACACCAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
FD943873       --> AACACCAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
FD945123       --> AACACCAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
FD977607       --> AACACCAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
EX766797       --> AACACCAGTAACGAAACCGCACCAAAAGCAGCCATGACTTGAGATTTGAT
FD544647       --> ..................................................
EV572637       --> AACACCAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
FD976003       --> AACACCAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT
FY441336       --> AACACCAGTAACGAAACCGCACCAGAAGCAGCCATGACTTGAGATTTGAT

               601    -    651
UN21972        --> GAGGTGGCCTTTGTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- GAGGTGGCCTTTGTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
FY432838       <-- GAGGTGGCCTTTGTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
EY938342       <-- GAGGTGGCCTTTGTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
EY925260       <-- GAGGTGGCCTTTGTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
FY454210       <-- GAGGTGGCCTTTGTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
FY433119       <-- GAGGTGGCCTTTGTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
EV570187       <-- GAGGTGGCCTTTGTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
EV566304       <-- GAGGTGGC-TTTGTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
EY905487       <-- GAGGTGGC-TTTGTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
EX758165       <-- GAGGTGGC-TTTGTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
EV567765       <-- ............GTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
EY931769       <-- ............GTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
EV571468       --> GAGGTGGCCTTTGTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
FD968500       --> ..................................................
EV540646       --> GAGGTGGCCTTTGTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
EV542209       --> GAGGTGGCCTTTGTCACGGACCCATTCAGCTAAGAAGGGTACTTTCATGA
EX760524       --> ..................................................
EX766379       --> GAGGTGGCCTTTGTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
EY901913       --> ..................................................
FD537741       --> ..................................................
FD538688       --> GAGGTGGCCTTTGTCACGCACCCATTCAGCTAAGAGGGGTACTTTCATGA
FD943873       --> GAGGTGGCCTTTGTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
FD945123       --> GAGGTGGCCTTTGTCACGCACCCATTCAGC....................
FD977607       --> GAGGTGGCCTTTGTCACGCACCC...........................
EX766797       --> GAGGTGGCCTTTGTCACGCACCCATTCAGCTAAAAAGGGTACTTTCATGA
FD544647       --> ..................................................
EV572637       --> GAGGTGGCCTTTGTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
FD976003       --> GAGGTGGCCTTTGTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA
FY441336       --> GAGGTGGCCTTTGTCACGCACCCATTCAGCTAAGAAGGGTACTTTCATGA

               651    -    701
UN21972        --> GACGTTTGTCCTTCCCGAGTTCTTTCGCAGCTTTTCTAGTGTAGATGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- GACGTTTGTCCTTCCCGAGTTCTTTCGCAGCTTTTCTAGTGTAGATGTAA  Raphanus sativus cv GSK3-1
FY432838       <-- GACGTTTGTCCTTCCCGAGTTCTTTCGCAGCTTTTCTAGTGTAGATGTAA  Raphanus sativus cv GSK3-1
EY938342       <-- GACGTTTGTCCTTCCCAAGTTCTTTCGCAGATTTTCTAGTGTAAATGTAA  Raphanus sativus cv Early Scarlet Globe
EY925260       <-- GACGTTTGTCCTTTCCGAGTTCTTTCGCAGCTTTTCTAGTGTAAATGTAA  Raphanus raphanistrum subsp. landra
FY454210       <-- GACGTTTGTCCTTCCCGAGTTCTTTCGCAGCTTTTCTAGTGTAGATGTAA  Raphanus sativus cv GSK3-1
FY433119       <-- GACGTTTGTCCTTCCCGAGTTCTTTCGCAGCTTTTCTAGTGTAGATGTAA  Raphanus sativus cv GSK3-1
EV570187       <-- GACGTTTGTCCTTCCCGAGTTCTTTCGCAGCTTTTCTAGTGTAGATGTAA  Raphanus raphanistrum subsp. landra
EV566304       <-- GACGTTTGTCCTTCCCGAGTTCTTTCGCAGCTTTTCTAGTGTAGATGTAA  Raphanus raphanistrum subsp. landra
EY905487       <-- GACGTTTGTCCTTCCCGAGTTCTTTCGCAGCTTTTCCAGTGTAGATGTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758165       <-- GACGTTTGTCCTTCCCGAGTTCTTTCGCAGCTTTTCTAGTGTAGATGTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567765       <-- GACGTTTGTCCTTCCCGAGTTCTTTCGCAGCTTTTCTAGTGTAGATGTAA  Raphanus raphanistrum subsp. landra
EY931769       <-- GACGTTTGTCCTTCCCGAGTTCTTTCGCAGTTTTTCTAGTGTAAATGTAG  Raphanus sativus var. oleiformis
EV571468       --> GACGTTTGTCCTTCCCGAGTTCTTTCGCAGCTTTTCTAGTGTAGATGTAA  Raphanus raphanistrum subsp. landra
FD968500       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540646       --> GACGTTAGTCCTTCCCGAGTTCTTTCGCAGCTTTTCTAGTGTAGATGTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542209       --> GACGTTTGTCCTTCCCGAGTTCTTTCGCAGCTTTTCTAGTGTAAATGTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760524       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX766379       --> GACGTTTGTCCTTCCCGAGTTCTTTCGCAGCTTTTCTAGTGTAAATGTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901913       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537741       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538688       --> GACGTTTGTCCTTCCCAAGTTCTTTCGCAGCTTTTCTAGTGTAAATGTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD943873       --> GACGTTTGTCCTTCCCAAGTTCTTTCGCAGCTTTTCTAGTGTAAATGTAA  Raphanus sativus cv Early Scarlet Globe
FD945123       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD977607       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766797       --> GACGTTTGTCCTTCCCGAGTTCTTTCGCAGCTTTTCTAGTGTAAATGTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544647       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572637       --> GACGTTTGTCCTTCCCGAGTTCTTTCGCAGCTTTTCTAGTGTAGATGTAA  Raphanus raphanistrum subsp. landra
FD976003       --> GACGTTTGTCCTTCCCGAGTTCTTTCGCAGCTTTTCTAGTGTAAATGTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY441336       --> GACGTTTGTCCTTCCCGAGTTCTTTCGCAGCTTTTCTAGTGTAGATGTAA  Raphanus sativus cv GSK3-1

               701    -    751
UN21972        --> CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
FY432838       <-- CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
EY938342       <-- CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
EY925260       <-- CCCACAGTGTGCAACATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
FY454210       <-- CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
FY433119       <-- CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
EV570187       <-- CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
EV566304       <-- CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
EY905487       <-- CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
EX758165       <-- CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
EV567765       <-- CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
EY931769       <-- CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
EV571468       --> CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
FD968500       --> ..................................................
EV540646       --> CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
EV542209       --> CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
EX760524       --> ..................................................
EX766379       --> CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
EY901913       --> ..................................................
FD537741       --> ..................................................
FD538688       --> CCCACAGTATGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
FD943873       --> CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
FD945123       --> ..................................................
FD977607       --> ..................................................
EX766797       --> CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
FD544647       --> ..................................................
EV572637       --> CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT
FD976003       --> CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGC..
FY441336       --> CCCACAGTGTGCAGCATTGCTTCCCCAAAACCAGCAGTTGAGAGTCGCCT

               751    -    801
UN21972        --> TGCCTCAGCGGTAGCCCAATTCACAAAATCATCGGTTCGTCCTTCCACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- TGCCTCAGCGGTAGCCCAATTCACAAAATCATCGGTTCGTCCTTCCACGA
FY432838       <-- TGCCTCAGCGGTAGCCCAATTCACAAAATCATCGGTTCGTCCTTCCACGA
EY938342       <-- TGCCTCAGCGGTAGCCCAATTCACAAAATCATCGGTTCGTCCTTCCACGA
EY925260       <-- TGCCTCAGCGGTAGCCCAATTCACAAAATCATCGGTTCGTCCTTCCACGA
FY454210       <-- TGCCTCAGCGGTAGCCCAATTCACAAAATCATCGGTTCGTCCTTCCACGA
FY433119       <-- TGCCTCAGCGGTAGCCCAATTCACAAAATCATCGGTTCGTCCTTCCACGA
EV570187       <-- TGCCTCAGCGGTAGCCCAATTCACAAAATCATCGGTTCGTCCTTCCACGA
EV566304       <-- TGCCTCAGCGGTAGCCCAATTCGCAAAATCATCGGTTCGTCCTTCCACGA
EY905487       <-- TGCCTCAGCGGTAGCCCAATTCACAAAATCATCGGTTCGTCCTTCCACGA
EX758165       <-- TGCCTCAGCGGTAGCCCAATTCACAAAATCATCGGTTCGTCCTTCCACGA
EV567765       <-- TGCCTCAGCGGTAGCCCAATTCACAAAATCATCGGTTCGTCCTTCCACGA
EY931769       <-- TGCCTCAGCGGTAGCCCAATTCACAAAATCATCGGTTCGTCCTTCCACGA
EV571468       --> TGCCTCAGCGGTAGCCCAATTCGCAAAATCATCGGTTCGTCCTTCCACGA
FD968500       --> ..................................................
EV540646       --> TGCCTCAGCGGTAGCCCAATTCACAAAATCATCGGTTCGTCCTTCCACGA
EV542209       --> TGCCTCAGCGGTAGCCCAATTCACAAAATCATCGGTTCGTCCTTCCACGA
EX760524       --> ..................................................
EX766379       --> TGCCTCAGCGGTAGCC-AATTCACAAAATCATCGGTTCGTC-TTCCA...
EY901913       --> ..................................................
FD537741       --> ..................................................
FD538688       --> TGCCTCAGCGGTAGCCCAATTCACAAAATCATCG................
FD943873       --> TGCCTCAGTGGTAGCCCAATTCAC..........................
FD945123       --> ..................................................
FD977607       --> ..................................................
EX766797       --> TGCCTCAGCGGTAGCCCAATTCACAAAATCA...................
FD544647       --> ..................................................
EV572637       --> TGCCTCAGCGGTAGCCCAATTCACAAAATCATCGGTTCGTCCTTCCACGA
FD976003       --> ..................................................
FY441336       --> TGCCTCAGCGGTAGCCCAATTCACAAAATCATCGGTTCGTCCTTCCACGA

               801    -    851
UN21972        --> ATGGTTCGAGTTTGTTCTTCAGTGTAGTGACAAGCTTGTCTTCCCTTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- ATGGTTCGAGTTTGTTCTTCAGTGTAGTGACAAGCTTGTCTTCCCTTTGC  Raphanus sativus cv GSK3-1
FY432838       <-- ATGGTTCGAGTTTGTTCTTCAGTGTAGTGACAAGCTTGTCTTCCCTTTGC  Raphanus sativus cv GSK3-1
EY938342       <-- ATGGTTCGAGTTTGTTCTTCAGCGTAGTGACAAGCTTGTCTTCCCTTTCT  Raphanus sativus cv Early Scarlet Globe
EY925260       <-- ATGGTTCGAGTTTGTTCTTCAGCGTAGTGACAAGCTTGTCTTCCCTTTCT  Raphanus raphanistrum subsp. landra
FY454210       <-- ATGGTTCGAGTTTGTTCTTCAGTGTAGTGACAAGCTTGTCTTCCCTTTGC  Raphanus sativus cv GSK3-1
FY433119       <-- ATGGTTCGAGTTTGTTCTTCAGTGTAGTGACAAGCTTGTCTTCCCTTTGC  Raphanus sativus cv GSK3-1
EV570187       <-- ATGGTTCGAGTTTGTTCTTCAGTGTAGTGACAAGCTTGTCTTCCCTTTCC  Raphanus raphanistrum subsp. landra
EV566304       <-- ATGGTTCGAGTTTGTTCTTCAGTGTAGTGACAAGCTTGTCTTCCCTTTCC  Raphanus raphanistrum subsp. landra
EY905487       <-- ATGGTTCGAGTTTGTTCTTCAGTGTAGTGACAAGCTTGTCTTCCCTTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758165       <-- ATGGTTCGAGTTTGTTCTTCAGTGTAGTGACAAGCTTGTCTTACCTTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567765       <-- ATGGTTCGAGTTTGTTCTTCAGTGTAGTGACAAGCTTGTCTTCCCTTTCC  Raphanus raphanistrum subsp. landra
EY931769       <-- ATGGTTCGAGTTTGTTCTTCAGTGTAGTGACAAGCTTGTCTTCCCTTTCC  Raphanus sativus var. oleiformis
EV571468       --> ATGGTTCGAGTTTGTTCTTCAGTGTAGTGACAAGCTTGTCTTCCCTTTCC  Raphanus raphanistrum subsp. landra
FD968500       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540646       --> ATGGTTCGAGTTTGTTCTTCAGCGTAGTGACAAGCTTGTCTTCCCTTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542209       --> ATGGTTCGAGTTTGTTCTTCAGCGTAGTGACAAGCTTGTCTTCCCTTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760524       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX766379       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901913       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537741       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538688       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD943873       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD945123       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD977607       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766797       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544647       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572637       --> ATGGTTCGAGTTTGTTCTTCAGTGTAGTGACAAGCTTGTCTTCCCTTTCC  Raphanus raphanistrum subsp. landra
FD976003       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY441336       --> ATGGTTCGAGTTTGTTCTTCAGTGTAGTGACAAGCTTGTCTTCCCTTTGC  Raphanus sativus cv GSK3-1

               851    -    901
UN21972        --> TTTTGCATCGCTTTGATCTTGTCTTGAAGCAACTTTTTCCTAATCTCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- TTTTGCATCGCTTTGATCTTGTCTTGGAGCAACTTTTTCCTAATCTCAGG  Raphanus sativus cv GSK3-1
FY432838       <-- TTTTGCATCGCTTTGATCTTGTCTTGGAGCAACTTTTTCCTAATCTCAGG  Raphanus sativus cv GSK3-1
EY938342       <-- TTTTGCATCGCTTTGATCTTGTCTTGAAGCAACTTTTTCCTAATCTCAGG  Raphanus sativus cv Early Scarlet Globe
EY925260       <-- TTTTGCATCGCTTTGATCTTGTCTTGAAGCAACTTTTTCCTAATCTCAGG  Raphanus raphanistrum subsp. landra
FY454210       <-- TTTTGCATCGCTTTGATCTTGTCTTGGAGCAACTTTTTCCTAATCTCAGG  Raphanus sativus cv GSK3-1
FY433119       <-- TTTTGCATCGCTTTGATCTTGTCTTGGAGCAACTTTTTCCTAATCTCAGG  Raphanus sativus cv GSK3-1
EV570187       <-- TTTTGCATCGCTTTGATCTTGTCTTGAAGCAACTTTTTCCTGATCTCAGG  Raphanus raphanistrum subsp. landra
EV566304       <-- TTTTGCATCGCTTTGATCTTGTCTTGAAGCAACTTTTTCCTGATCTCAGG  Raphanus raphanistrum subsp. landra
EY905487       <-- TTTTGCATCGCTTTGATCTTGTCTTGAAGCAACTTTTTCCTAATCTCAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758165       <-- TTTTGCATCGCTTTGATCTTGTCTTGAAGCAACTTTTTCCTAATCTCAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567765       <-- TTTTGCATCGCTTTGATCTTGTCTTGAAGCAACTTTTTCCTGATCTCAGG  Raphanus raphanistrum subsp. landra
EY931769       <-- TTTTGCATCGCTTTGATCTTGTCTTGGAGCAACTTTTTCCTAATCTCAGG  Raphanus sativus var. oleiformis
EV571468       --> TTTTGCATCG........................................  Raphanus raphanistrum subsp. landra
FD968500       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540646       --> TTTTGCATCGCTTTGATCTTGTCTTGAAGCAACTTTTTCCTAATCTCAG-  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542209       --> TTTTGCATC.........................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760524       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX766379       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901913       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537741       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538688       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD943873       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD945123       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD977607       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766797       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544647       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572637       --> TTTTGCATCGCTTTGA..................................  Raphanus raphanistrum subsp. landra
FD976003       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY441336       --> TTTTGCATCGCTTTGATCTTGTCTTGGAGCAACTTTTTCCTAATCTCAGG  Raphanus sativus cv GSK3-1

               901    -    951
UN21972        --> CTCATGGGATTCTACTTCAGCGTCGAGGGATGCAATGGAAGCGAGAGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- CTCATGGGATTCTACTTCAGCGTCGAGGGATGCAATGGAAGCGAGAGCAA
FY432838       <-- CTCATGGGATTCTACTTCAGCGTCGAGGGATGCAATGGAAGCGAGAGCAA
EY938342       <-- CTCATGGGATTCTACTTCAGCGTCGAGGGATGCAATTGAAGCGAGAGCAA
EY925260       <-- CTCATGGGATTCTACTTCAGCGTCGAGGGATGCAATGGAAGCGAGAGCAA
FY454210       <-- CTCATGGGATTCTACTTCAGCGTCGAGGGATGCAATGGAAGCGAGAGCAA
FY433119       <-- CTCATGGGATTCTACTTCAGCGTCGAGGGATGCAATGGAAGCGAGAGCAA
EV570187       <-- CTCATGGGATTCTACTTCAGCGTCGAGGGATGCAATGGAAGCGAGAGCAA
EV566304       <-- CTCATGGGATTCTACTTCAGCGTCGAGGGATGCAATGGAAGCGAGAGCAA
EY905487       <-- CTCATGGGATTCTACTTCAGCGTCGAGGGATGCAATGGAAGCGAGAGCAA
EX758165       <-- CTCATGGGATTCTACTTCAGCGTCGAGGGATGCAATGGAAGCGAGAGCAA
EV567765       <-- CTCATGGGATTCTACTTCAGCGTCGAGGGATGCAATGGAAGCGAGAGCAA
EY931769       <-- CTCATGGGATTCTACTTCAGCGTCGAGCGATGCAATGGAAGCGAGAGCAA
EV571468       --> ..................................................
FD968500       --> ..................................................
EV540646       --> CTCATGGGATTCTACTTCAGCGTCGAGGGA....................
EV542209       --> ..................................................
EX760524       --> ..................................................
EX766379       --> ..................................................
EY901913       --> ..................................................
FD537741       --> ..................................................
FD538688       --> ..................................................
FD943873       --> ..................................................
FD945123       --> ..................................................
FD977607       --> ..................................................
EX766797       --> ..................................................
FD544647       --> ..................................................
EV572637       --> ..................................................
FD976003       --> ..................................................
FY441336       --> CTCATGGGATTCTA....................................

               951    -   1001
UN21972        --> GTTGGCCAATATAGTCCTCAAA-CAACTCGCTGCCAAAGAGCATTCCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- GTTGGCCAATATAGTCCTCAAAGCAACTCGCTGCCAAAGAGCATTCCAAA
FY432838       <-- GTTGGCCAATATAGTCCTCAAA-CAACTCGCTGCCAAAGAGCATTCCAAA
EY938342       <-- GTTGGCCAATATAGTCCTCAAA-CAACTCGCTGCCAAAGAGCc.......
EY925260       <-- GTTGGCCAATATAGTCCTCAAA-CAACTCGCTGCCAAAGAGCATGCCAAA
FY454210       <-- GTTGGCCAATATAGTCCTCAAA-CAACTCGCTGCCAAAGAGCATTCCAAA
FY433119       <-- GTTGGCCAATATAGTCCTCAAA-CAACTCGCTGCCAAAGAGCATTCCAAA
EV570187       <-- GTTGGCCGATATAGTCCTCAAA-CAACTCGCTGCCAAAGAGCATTCCAAA
EV566304       <-- GTTGGCCGATATAGTCCTCAAA-CAACTCGCTGCCAAAGAGCATTCCAAA
EY905487       <-- GTTGGCCAATATAGTCCTCAAA-CAACTCGCTGCCAAAGAGCATGCCAAA
EX758165       <-- GTTGGCCAATATAGTCCTCAAA-CAACTCGCTGCCAAAGAGCATGCCAAA
EV567765       <-- GTTGGCCGATATAGTCCTCAAA-CAACTCGCTGCCAAAGAGCATTCCAAA
EY931769       <-- GTTGGCCAATATAGTCCTCAAA-CAACTCGCTGCCAAAGAGCATTCCAAA
EV571468       --> ..................................................
FD968500       --> ..................................................
EV540646       --> ..................................................
EV542209       --> ..................................................
EX760524       --> ..................................................
EX766379       --> ..................................................
EY901913       --> ..................................................
FD537741       --> ..................................................
FD538688       --> ..................................................
FD943873       --> ..................................................
FD945123       --> ..................................................
FD977607       --> ..................................................
EX766797       --> ..................................................
FD544647       --> ..................................................
EV572637       --> ..................................................
FD976003       --> ..................................................
FY441336       --> ..................................................

               1001   -   1051
UN21972        --> CACAGCTGCAGGATCAACCATTGCATCCTGTTGAACGCCGTCTTTGCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- CACAGCTGCAGGATCAACC...............................
FY432838       <-- CACAGCTGCAGGATCAACCATTGCATCCTGTTGAACGCCGTCTTTGCCAA
EY938342       <-- ..................................................
EY925260       <-- TACAGCTGCAGGATCAACCATTGCATCCTGTTGAACGCCTTCTTTGCCAA
FY454210       <-- CACAGCTGCAGGATCAACCATTGCATCCTGTTGAACGCCGTCTTTGCCAA
FY433119       <-- CACAGCTGCAGGATCAACCATTGCATCCTGTTGAACGCCGTCTTTGCCAA
EV570187       <-- CACAGCTGCAGGATCAACCATTGCATCCTGTTGAACGCCGTCTTTGCC--
EV566304       <-- CACAGCTGCAGGATCAACCATTGCATCCTGTTGAACGCCGTCTTTGCCAA
EY905487       <-- TACAGCTGCAGGATCAACCATTGCATCCTGTTGAACGCCGTCTTTGCCAA
EX758165       <-- TACAGCTGCAGGATCAACCATTGCATCCTGTTGAACGCCGTCTTTGCCAA
EV567765       <-- CACAGCTGCAGGATCAACCATTGCATCCTGTTGAACGCCGTCTTTGCCAA
EY931769       <-- CACAGCTGCAGGATCAACCATTGCATCCTGTTGAACGCCGTCTTTGCCAA
EV571468       --> ..................................................
FD968500       --> ..................................................
EV540646       --> ..................................................
EV542209       --> ..................................................
EX760524       --> ..................................................
EX766379       --> ..................................................
EY901913       --> ..................................................
FD537741       --> ..................................................
FD538688       --> ..................................................
FD943873       --> ..................................................
FD945123       --> ..................................................
FD977607       --> ..................................................
EX766797       --> ..................................................
FD544647       --> ..................................................
EV572637       --> ..................................................
FD976003       --> ..................................................
FY441336       --> ..................................................

               1051   -   1101
UN21972        --> ATTTATCATAAGCAGTTCGCTTCTCGGGATCGCTAAGAACCTGGTAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- ..................................................
FY432838       <-- ATTTATCATAAGCAGTTCGCTTCTCGGGATCGCTAAGAACCTGGTAAGCT
EY938342       <-- ..................................................
EY925260       <-- ATTTATCATAAGCAGTTCGCTTCTCGGGATCGCTAAGAACCTGGTAAGCT
FY454210       <-- ATTTATCATAAGCAGTTCGCTTCTCGGGATCGCTAAGAACCTGGTAAGCT
FY433119       <-- ATTTATCATAAGCAGTTCGCTTCTCGGGATCGCTAAGAACCTGGTAAGCT
EV570187       <-- ATTTATCATAAGCAGTTCGCTTCTCGGGATCGCTAAGAACCTGGTAAGCT
EV566304       <-- ATTTATCATAAGCAGTTCGCTTCTCGGGATCGCTAAGAACCTGGTAAGCT
EY905487       <-- ATTTATCATAAGCAGTTCGCTTCTCGGGATCGCTAAGAACCTGGTAAGCT
EX758165       <-- ATTTATCATAAGCAGTTCGCTTCTCGGGATCGCTAAGAACCTGGTAAGCT
EV567765       <-- ATTTATCATAAGCAGTTCGCTTCTCGGGATCGCTAAGAACCTGGTAAGCT
EY931769       <-- ATTTATCATAAGCAGTTCGCTTCTCGGGATCGCTAAGAACCTGGTAAGCT
EV571468       --> ..................................................
FD968500       --> ..................................................
EV540646       --> ..................................................
EV542209       --> ..................................................
EX760524       --> ..................................................
EX766379       --> ..................................................
EY901913       --> ..................................................
FD537741       --> ..................................................
FD538688       --> ..................................................
FD943873       --> ..................................................
FD945123       --> ..................................................
FD977607       --> ..................................................
EX766797       --> ..................................................
FD544647       --> ..................................................
EV572637       --> ..................................................
FD976003       --> ..................................................
FY441336       --> ..................................................

               1101   -   1151
UN21972        --> TCACCTAGTGTCTGAAAGTTTTTAGCAGCTTGAGGATCATTAGGGTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- ..................................................
FY432838       <-- TCACCTAGTGTCTGAAAGTTTT-AGCAGCT....................
EY938342       <-- ..................................................
EY925260       <-- TCACTTAGTGTCTGAAAGTTTTTAGC........................
FY454210       <-- TCACCTAGTGTCTGAAAGTTTTTAGCAGCTTGAGGATCATTAGGGTTCTT
FY433119       <-- TCACCTAGTGTCTGAAAGTTTTTAGCAGCTTGAGGATCATTAGGGTTCTT
EV570187       <-- TCACCTAGTGTCTGAAAGTTTTTAGCAGCTTGAGGATCATTAGGGTTCTT
EV566304       <-- TCACCTAGTGTCTGAAAGTTTTTAGCAGCTTGAGGATCATTAGGGTTCTT
EY905487       <-- TCACCTAGTGTCTGAAAGTTTTTAGCAGCCTGAGGATCATTAGGGTTCTT
EX758165       <-- TCACCTAGTGTCTGAAAGTTTTTAGCAGCCTGAGGATCATTAGGGTTCTT
EV567765       <-- TCACCTAGTGTCTGAAAGTTTTTAGCAGCTTGAGGATCATTAGGGTTCTT
EY931769       <-- TCACCTAGTGTCTGAAAGTTTTTAGCAGCTTGAGGATCATTAGGGTTCTT
EV571468       --> ..................................................
FD968500       --> ..................................................
EV540646       --> ..................................................
EV542209       --> ..................................................
EX760524       --> ..................................................
EX766379       --> ..................................................
EY901913       --> ..................................................
FD537741       --> ..................................................
FD538688       --> ..................................................
FD943873       --> ..................................................
FD945123       --> ..................................................
FD977607       --> ..................................................
EX766797       --> ..................................................
FD544647       --> ..................................................
EV572637       --> ..................................................
FD976003       --> ..................................................
FY441336       --> ..................................................

               1151   -   1201
UN21972        --> GTCTGGATGAACTTGCCTTGCTTTGATATAATAAGCTTTCTTAATGTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- ..................................................
FY432838       <-- ..................................................
EY938342       <-- ..................................................
EY925260       <-- ..................................................
FY454210       <-- GTCTGGATGAACTTGCCTTGCTTTGATATAATAAGCTTTCTTAATGTCAG
FY433119       <-- GTCTGGATGAACTTGCCTTGCTTTGATATAATAAGCTTTCTTAATGTCAG
EV570187       <-- GTCTGGATGAACTTGCCTTGCTTTGATATAATAAGCTTTCTTAATGTCAG
EV566304       <-- GTCTGGATGAACTTGCCTTGCTTTGATATAATAAGCTTTCTTAATGTCAG
EY905487       <-- GTCTGGATGGACTTGCCTTGCTTTGATATAATAAGCTTTCTTAATGTCAG
EX758165       <-- GTCTGGATGGACTTGCCTTGCTTTGATATAATAAGCTTTCTTAATGTCAG
EV567765       <-- GTCTGGATGAACTTGCCTTGCTTTGATATAATAAGCTTTCTTAATGTCAG
EY931769       <-- GTCTGGATGAACTTGCCTTGCTTTGATATAATAAGCTTTCTTAATGTCAG
EV571468       --> ..................................................
FD968500       --> ..................................................
EV540646       --> ..................................................
EV542209       --> ..................................................
EX760524       --> ..................................................
EX766379       --> ..................................................
EY901913       --> ..................................................
FD537741       --> ..................................................
FD538688       --> ..................................................
FD943873       --> ..................................................
FD945123       --> ..................................................
FD977607       --> ..................................................
EX766797       --> ..................................................
FD544647       --> ..................................................
EV572637       --> ..................................................
FD976003       --> ..................................................
FY441336       --> ..................................................

               1201   -   1251
UN21972        --> CAGCTGAGGCATCAGTCTTGACACCTAAGACGTCGTAATATTCACTCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- ..................................................
FY432838       <-- ..................................................
EY938342       <-- ..................................................
EY925260       <-- ..................................................
FY454210       <-- CAGCTGAGGCATCAGTCTTGACACCTAAGACGTCGTAATATTCACTCTCC
FY433119       <-- CAGCTGAGGCATCAGTCTTGACACCTAAGACGTCGTAATATTCACTCTCC
EV570187       <-- CAGCTGAGGCATCAGTCTTGACACCTAAGACGTCGTAATATTCACTCTCC
EV566304       <-- CAGCTGAGGCATCAGTCTTGACACCTAAGACGTCGTAATATTCACTCTCC
EY905487       <-- AAGCTGAGGCATCAGTCTTGACGCCTAAGACGTCGTAATACTCACTCTCC
EX758165       <-- AAGCTGAGGCATCAGTCTTGACGCCTAAGACGTCGTAATACTCACTCTCC
EV567765       <-- CAGCTGAGGCATCAGTCTTGACACCTAAGACGTCGTAATATTCACTCTCC
EY931769       <-- CAGCTGAGGCATCAGTCTTGACACCTAAGACGTCGTAATATTCACTCTCC
EV571468       --> ..................................................
FD968500       --> ..................................................
EV540646       --> ..................................................
EV542209       --> ..................................................
EX760524       --> ..................................................
EX766379       --> ..................................................
EY901913       --> ..................................................
FD537741       --> ..................................................
FD538688       --> ..................................................
FD943873       --> ..................................................
FD945123       --> ..................................................
FD977607       --> ..................................................
EX766797       --> ..................................................
FD544647       --> ..................................................
EV572637       --> ..................................................
FD976003       --> ..................................................
FY441336       --> ..................................................

               1251   -   1301
UN21972        --> TTCACCATTCCCTCCTC--TCTCTCTATAAAGTGTTCGTG--GAGCACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- ..................................................
FY432838       <-- ..................................................
EY938342       <-- ..................................................
EY925260       <-- ..................................................
FY454210       <-- TTCACCATTCCCTCCTC--TCTC--TATAAAGTGTTCGTG--GAGCACAA
FY433119       <-- TTCACCATc.........................................
EV570187       <-- TTCACCATTCCCTCCTC--TCTCTCTATAAAGTGTTCGTG--GAGCACAA
EV566304       <-- TTCACCATTCCCTCCTC--TCTCTCTATAAAGTGTTCGTG--GAGCACAA
EY905487       <-- TTCACCATTCTCTCCTCAAACTCTCTATAAAGTGTTGGTGTGGAGCACAA
EX758165       <-- TTCACCATTCTCTCCTCAAACTCTCTATAAAGTGTTGGTGTGGAGCACAA
EV567765       <-- TTCACCATTCCCTCCTC--TCTCTCTATAAAGTGTTCGTG--GAGCACAA
EY931769       <-- ..................................................
EV571468       --> ..................................................
FD968500       --> ..................................................
EV540646       --> ..................................................
EV542209       --> ..................................................
EX760524       --> ..................................................
EX766379       --> ..................................................
EY901913       --> ..................................................
FD537741       --> ..................................................
FD538688       --> ..................................................
FD943873       --> ..................................................
FD945123       --> ..................................................
FD977607       --> ..................................................
EX766797       --> ..................................................
FD544647       --> ..................................................
EV572637       --> ..................................................
FD976003       --> ..................................................
FY441336       --> ..................................................

               1301   -   1351
UN21972        --> AAGCCAGAAAGAGATTGGATTGATCTGCAAATAGATTTTTAGATTTGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY444220       <-- ..................................................
FY432838       <-- ..................................................
EY938342       <-- ..................................................
EY925260       <-- ..................................................
FY454210       <-- AAGCCAGAAAGAGA....................................
FY433119       <-- ..................................................
EV570187       <-- AAGCCAGAAAGAGATTGGATTGATCTGCAAATAGATTTTTAAATTTtc..
EV566304       <-- AAGCCAGAAAGAGATTGGATTGATCTGCAAATAGATTTTTAGATTTGGTA
EY905487       <-- AAGCCAGAAGGAGATTattggattgtttccc...................
EX758165       <-- AAGCCAGAAGGAGATTattggattgtttcagatccc..............
EV567765       <-- AAGCCAGAAAGAGCTTGGATTGATCTGCAAATAGATTTTTcc........
EY931769       <-- ..................................................
EV571468       --> ..................................................
FD968500       --> ..................................................
EV540646       --> ..................................................
EV542209       --> ..................................................
EX760524       --> ..................................................
EX766379       --> ..................................................
EY901913       --> ..................................................
FD537741       --> ..................................................
FD538688       --> ..................................................
FD943873       --> ..................................................
FD945123       --> ..................................................
FD977607       --> ..................................................
EX766797       --> ..................................................
FD544647       --> ..................................................
EV572637       --> ..................................................
FD976003       --> ..................................................
FY441336       --> ..................................................

               1351   -   1401
UN21972        --> AGTGCC
                   ~~~~~~
FY444220       <-- ......
FY432838       <-- ......
EY938342       <-- ......
EY925260       <-- ......
FY454210       <-- ......
FY433119       <-- ......
EV570187       <-- ......
EV566304       <-- AGTGCC
EY905487       <-- ......
EX758165       <-- ......
EV567765       <-- ......
EY931769       <-- ......
EV571468       --> ......
FD968500       --> ......
EV540646       --> ......
EV542209       --> ......
EX760524       --> ......
EX766379       --> ......
EY901913       --> ......
FD537741       --> ......
FD538688       --> ......
FD943873       --> ......
FD945123       --> ......
FD977607       --> ......
EX766797       --> ......
FD544647       --> ......
EV572637       --> ......
FD976003       --> ......
FY441336       --> ......