Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN22011

               1      -     51
UN22011        --> TTTTTTGAAAATCCCAATCACGCTCTTCTCCAGAAAAAAAAAAAGAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX753016       <-- .................................gggatcccaatcacgct
EX892088       <-- ..................................................
EX751765       <-- ..................................................
EY935166       <-- ..................................................
EY939180       --> TTTTTTGAAAATCCCAATCACGCTCTTCTCCAGAAAAAAAAAAAGAAAAA
FD950286       --> ....ggGAAAATCCCAATCACGCTCTTCTCCAGAAAAAAAAAAAGAAAAA
EY932894       --> ..................................................

               51     -    101
UN22011        --> AAAGAGAGAAAAAAAAAAAAAGGAAGGGTTTTAACAATGGCGAGAAGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX753016       <-- ctctccAGAAAAAAAAAGAAAGTAAGGG-TTTAACAATGGCGAGAAGACC
EX892088       <-- ..................................................
EX751765       <-- ..................................................
EY935166       <-- ..................................................
EY939180       --> AAAGAGAGAAAAAAAAAAAAAGGAAGGGTTTTAACAATGGCGAGAAGACC
FD950286       --> AAA-AAAGAAAAAAAAAA---GGAAGGGTTTTAACAATGGCGAGAAGACC
EY932894       --> ggaaaaaagAAAGAAAAAAAAGGAAGGGTTTTAACAATGGCGAGAAGACC

               101    -    151
UN22011        --> GGAAGAAGTGTACGACTACTTGTTTAAAGTGGTTCTCATCGGAGACTCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX753016       <-- GGAAGAAGAATACGACTACTTGTTTAAAGTGGTTCTCATCGGAGACTCCG
EX892088       <-- ................TACTTGTTTAAAGTGGTTCTCATCGGAGACTCCG
EX751765       <-- ...........................................GACTCCG
EY935166       <-- ..................................................
EY939180       --> GGAAGAAGTGTACGACTACTTGTTTAAAGTGGTTCTCATCGGAGACTCCG
FD950286       --> GGAAGAAGTGTACGACTACTTGTTTAAAGTGGTTCTCATCGGAGACTCCG
EY932894       --> GGAAGAAGAGTACGACTACTTGTTTAAAGTGGTTCTCATCGGAGACTCCG

               151    -    201
UN22011        --> GTGTCGGCAAGTCGAATCTCCTCTCTAGATTCACTCGCGACGAGTTCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX753016       <-- GTGTTGGCAAGTCGAATCTCCTCTCTAGATTCACTCGCGACGAGTTCTGC
EX892088       <-- GCGTCGGCAAGTCGAATCTCCTCTCTAGATTCACTCGCGACGAGTTCTGC
EX751765       <-- GTGTTGGCAAGTCGAATCTCCTCTCTAGATTCACTCGCGACGAGTTCTGC
EY935166       <-- ..................................................
EY939180       --> GTGTCGGCAAGTCTAATCTCCTCTCTAGATTCACTCGCGACGAGTTCTGC
FD950286       --> GTGTCGGCAAGTCGAATCTCCTCTCTAGATTCACTCGCGACGAGTTCTGC
EY932894       --> GTGTCGGCAAGTCGAATCTCCTCTCTAGATTCACTCGCGACGAGTTCTGC

               201    -    251
UN22011        --> TTGGAATCCAAATCTACCATCGGTGTCGAATTCGCTACTCGCACTCTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX753016       <-- TTGGAATCCAAATCTACCATCGGTGCCGAATTCGCTACTCGTACTCTCCA
EX892088       <-- TTGGAATCCAAATCTACCATCGGTGTCGAATTCGCTACTCGCACTCTCCA
EX751765       <-- TTGGAATCCAAATCTACCATCGGTGTCGAATTCGCTACTCGTACTCTCCA
EY935166       <-- ................................CGCTACTCGCACTCTCCA
EY939180       --> TTGGAATCCAAATCTACCATCGGTGTCGAATTCGCTACTCGCACTCTCCA
FD950286       --> TTGGAATCCAAATCTACCATCGGTGTCGAATTCGCTACTCGCACTCTCCA
EY932894       --> TTGGAATCCAAATCTACCATCGGTGTCGAATTCGCTACTCGCACTCTCCA

               251    -    301
UN22011        --> AGTGGAAGGAAGGACTGTGAAAGCGCAGATATGGGACACCGCTGGGCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX753016       <-- AGTGGAAGGAAGGACTGTGAAAGCTCAGATATGGGACACGGCTGGGCAAG  Raphanus raphanistrum subsp. maritimus
EX892088       <-- AGTGGAAGGAAGGACTGTGAAAGCGCAGATATGGGACACGGCTGCGCAAG  Raphanus sativus var. oleiformis
EX751765       <-- AGTTGAAGGAAGGACTGTGAAAGCTCAGATATGGGACACGGCTGGGCAAG  Raphanus raphanistrum subsp. maritimus
EY935166       <-- AGTGGAAGGAAGGACTGTGAAAGCGCAGATATGGGACACCGCTGGGCAAG  Raphanus sativus cv Early Scarlet Globe
EY939180       --> AGTGGAAGGAAGGACTGTGAAAGCGCAGATATGGGACACCGCTGGGCAAG  Raphanus sativus cv Early Scarlet Globe
FD950286       --> AGTGGAAGGAAGGACTGTGAAAGCGCAGATATGGGACACCGCTGGGCAAG  Raphanus sativus cv Early Scarlet Globe
EY932894       --> AGTGGAAGGAAGGACTGTGAAAGCGCAGATATGGGACACCGCTGGGCAAG  Raphanus sativus var. oleiformis

               301    -    351
UN22011        --> AACGATACAGAGCCATAACCAGCGCCTACTACAGAGGCGCCCTCGGTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX753016       <-- AACGATACAGAGCCATAACCAGCGCCTACTACAGAGGTGCCCTTGGTGCT  Raphanus raphanistrum subsp. maritimus
EX892088       <-- AACGATACAGAGCCATAACCAGCGCCTACTACAGAGGTGCCCATGGTGCT  Raphanus sativus var. oleiformis
EX751765       <-- AACGATACAGAGCCATAACCAGCGCCTACTACAGAGGTGCCCTTGGTGCT  Raphanus raphanistrum subsp. maritimus
EY935166       <-- AACGATACAGAGCCATAACCAGCTCCTACTACAGAGGCGCGCTCGGTGCT  Raphanus sativus cv Early Scarlet Globe
EY939180       --> AACGATACAGAGCCATAACCAGCTCCTACTACAGAGGCGCGCTCGGTGCT  Raphanus sativus cv Early Scarlet Globe
FD950286       --> AACGATACAGAGCCATAACCAGCGCCTACTACAGAGGCGCCCTCGGTGCT  Raphanus sativus cv Early Scarlet Globe
EY932894       --> AACGATACAGAGCCATAACCAGCGCCTACTACAGAGGCGCGCTCGGTGCT  Raphanus sativus var. oleiformis

               351    -    401
UN22011        --> CTCTTGGTCTACGACGTCACTAAACCAACAACGTTCGAGAACGTTAGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX753016       <-- CTCTTGGTTTACGACGTCACTAAACCAACAACGTTCGAGAACGTTAGCCG  Raphanus raphanistrum subsp. maritimus
EX892088       <-- CTCTTGGTTTACGACGTCACTAAACCAACAACGTTTGAGAACGTTAGCCG  Raphanus sativus var. oleiformis
EX751765       <-- CTCTTGGTTTACGACGTCACTAAACCAACAACGTTCGAGAACGTTAGCCG  Raphanus raphanistrum subsp. maritimus
EY935166       <-- CTCTTGGTCTACGACGTCACTAAACCAACAACGTTCGAGAACGTTAGCCG  Raphanus sativus cv Early Scarlet Globe
EY939180       --> CTCTTGGTCTACGACGTCACTAAACCAACAACGTTCGAGAACGTTAGCCG  Raphanus sativus cv Early Scarlet Globe
FD950286       --> CTCTTGGTCTACGACGTCACTAAACCAACAACGTTCGAGAACGTTAGCCG  Raphanus sativus cv Early Scarlet Globe
EY932894       --> CTCTTGGTCTACGAAGTCACTAAACCAACAACGTTCGAGAACGTTAGCCG  Raphanus sativus var. oleiformis

               401    -    451
UN22011        --> GTGGTTGAAAGAGCTCAGAGACCATGCGGATTCCAACATCGTCATCATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX753016       <-- GTGGTTGAAAGAGCTCAGAGACCATGCGGATTCCAACATCGTCATCATGT
EX892088       <-- GTGGTTGAAAGAGCTCAGAGACCATGCGGATTCCAACATCGTCATCATGT
EX751765       <-- GTGGTTGAAAGAGCTCAGAGACCATGCGGATTCCAACATCGTCATCATGC
EY935166       <-- GTGGTTGAAAGAGCTCAGAGACCATGCGGATTCCAACATCGTCATCATGT
EY939180       --> GTGGTTGAAAGAGCTCAGAGACCATGCGGATTCCAACATCGTCATCATGT
FD950286       --> GTGGTTGAAAGAGCTCAGAGACCATGCGGATTCCAACATCGTCATCATGT
EY932894       --> GTGGTTGAAAGAGCTCAGAGACCATGCGGATTCCAACATCGTCATCATGT

               451    -    501
UN22011        --> TGATCGGAAACAAGACGGATCTGAAGCATCTCAGAGCTGTTGCCACGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX753016       <-- TGATCGGAAACAAGACGGATCTGAAGCATCTCAGAGCTGTTGCCACGGAG
EX892088       <-- TGATCGGAAACAAGACGGACCTGAAGCATCTCAGAGCTGTTGCCACGGAG
EX751765       <-- TGATCGGAAACAAGACGGATCTGAAGCATCTCAGAGCTGTTGCCACGGAG
EY935166       <-- TGATCGGAAACAAGACGGATCTGAAGCATCTCAGAGCTGTTGCCACGGAG
EY939180       --> TGATCGGAAACAAGACGGATCTGAAGCATCTCAGAGCTGTTGCCACGGAG
FD950286       --> TGATCGGAAACAAGACGGATCTGAAGCATCTCAGAGCTGTTGCCACGGAG
EY932894       --> TGATCGGAAACAAGACGGATCTGAAGCATCTCAGAGCTGTTGCCACGGAG

               501    -    551
UN22011        --> GATGCTCAGAGCTTCGCCGAGAAAGAAGGCTTGTCTTTCATCGAGACGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX753016       <-- GATGCTCAGAGCTTCGCCGAGAAAGAAGGCTTGTCTTTCATCGAGACGTC
EX892088       <-- GATGCTCAGAGCTTCGCCGAGAAAGAAGGCTTGTCTTTCATCGAGACGTC
EX751765       <-- GATGCTCAGAGCTTCGCCGAGAAAGAAGGCTTGTCTTTCATCGAGACGTC
EY935166       <-- GATGCTCAGAGCTTCGCCGAGAAAGAAGGCTTGTCTTTCATCGAGACGTC
EY939180       --> GATGCTCAGAGCTTCGCCGAGAAAGAAGGCTTGTCTTTCATCGAGACGTC
FD950286       --> GATGCTCAGAGCTTCGCCGAGAAAGAAGGCTTGTCTTTCATCGAGACGTC
EY932894       --> GATGCTCAGAGCTTCGCCGAGAAAGAAGGCTTGTCTTTCATCGAGACGTC

               551    -    601
UN22011        --> GGCTCTCGAGGCGCTGAACGTGGAGAAGGCCTTTCAGACGATTCTCTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX753016       <-- GGCTCTCGAGGCGCTGAACGTGGAGAAGGCCTTTCAGACTATTCTCTCGG
EX892088       <-- GGCTCTCGAGGCGCTGAACGTGGAGAAGGCCTTTCAGACGATTCTCTCGG
EX751765       <-- GGCTCTCGAGGCGCTGAACGTGGAGAAGGCCTTTCAGACTATTCTCTCGG
EY935166       <-- GGCTCTCGAGGCGCTGAACGTGGAGAAGGCCTTTCAGACGATTCTCTCGG
EY939180       --> GGCTCTCGAGGCGCT...................................
FD950286       --> GGCTCTCGAGGCGCTGAACGTGGAGAAGGCCTTTCAGACGATTCTCTCGG
EY932894       --> GGCTCTCGAGGCGCTGAACGTGGAGAAGGCCTTTCAGACAATTCTCTCGG

               601    -    651
UN22011        --> AGATCTACAGGATCATCAGCAAGAAATCGATATCTTCGGACCAGGCAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX753016       <-- AGATCTACAGGATCATCAGCAAGAAATCGATATCTTCGGACCAGGCAGAT
EX892088       <-- AGATTTACAGGATCATCAGCAAGAAATCGATATCTTCGGACCAGGCAGAT
EX751765       <-- AGATCTACAGGATCATCATCAAGAAATCGATATCTTCGGACCAGGCAGAT
EY935166       <-- AGATCTACAGGATCATCAGCAAGAAATCGATATCTTCGGACCAGGCAGAT
EY939180       --> ..................................................
FD950286       --> AGATCTACAGGATCATCAGCAAGAAATCGATATCTTCGGACCAGGCAGAT
EY932894       --> AGATCTACAGGATCATCAGCAAGAAATCGATATCTTCGGACCAGGCAGAT

               651    -    701
UN22011        --> GCAAATGGTAACGTCAGGGAAGGTCAAACAATCGATGTCGCTGCTGCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX753016       <-- GCAAATGGTAACGTCAGGGAAGGTCAAACAATCGATGTCGCTGCTGCCTC
EX892088       <-- GCAAATGGTAACGTCAGGGAAGGTCAAACAATCGATGTCGCTGCTGCCTC
EX751765       <-- GCAAATGGTAACGTCAGGGAAGGTCAAACAATCGATGTCGCTGCTGCCTC
EY935166       <-- GCAAATGGTAACGTCAGGGAAGGTCAAACAATCGATGTCGCTGCTGCCTC
EY939180       --> ..................................................
FD950286       --> GCAAATGGTAACG.....................................
EY932894       --> GCAAATGGTAACGTCAGGGAAGGTCAAACAATCGATGTCGCTGCTGCCTC

               701    -    751
UN22011        --> TTCTGAATCAAACACTAAGAAGCCTTGTTGCTCTTCTTCCTGAAAGGGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX753016       <-- TTCTGAATCAAACACTAAGAAGCCTTGTTGCTCTTCTTCCTGAAAGGGGC
EX892088       <-- TTCTGAATCAAACACTAAGAAGCCTTGTTGCTCTTCTTCCTGAAAGGG-C
EX751765       <-- TTCTGAATCAAACACTAAGAAGCCTTGTTGCTCTTCTTCCTGAAAGGGGC
EY935166       <-- TTCTGAATCAAACACTAAGAAGCCTTGTTGCTCTTCTTCCTGAAAGGGGC
EY939180       --> ..................................................
FD950286       --> ..................................................
EY932894       --> TTCTGAATCAAACACTAAGAAGCCTTGTTGCTCTTCTTCCTGAAAGGG-C

               751    -    801
UN22011        --> TTATCACACTTCGAAGCCAATATCTATGTATTTCCTTTT-ACGGCTTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX753016       <-- TTATCACACTTCGAAGCCAATATCTATGTATTTCCTTTT-ACGGCTTGCT
EX892088       <-- TTATCACACTTCGAAGCCAATATCTATGTATTTCCTTTTTACGGCTTGCT
EX751765       <-- TTATCACACTTCGAAGCCAATATCTATGTATTTCCTTTT-ACGGCTTGCT
EY935166       <-- TTATCACACTTCAAAGCCAATATCTATGTATTTCCTTTT-ACGGCTTGCT
EY939180       --> ..................................................
FD950286       --> ..................................................
EY932894       --> TTATCACACTTCGAAGCCAATATCTATGTATTTCCT..............

               801    -    851
UN22011        --> TGCATTGT--AATATAACTCAAGGATCATTCCTATATGAATTGTGAAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX753016       <-- TGCATTGT--AATATAACTCAAGGATCATTCCTATATGAATTGTGAAATT
EX892088       <-- TGCGTTGTGTAATATAACTCAAGGATCATTCCTATATGAATTGTGAAATT
EX751765       <-- TGCATTGT--AATATAACTCAAGGATCATTCCTATATGAATTGTGAAATT
EY935166       <-- TGCATTGT--AATATAACTCAAGGATCATTCCTATATGAATTGTGAAATT
EY939180       --> ..................................................
FD950286       --> ..................................................
EY932894       --> ..................................................

               851    -    901
UN22011        --> CAAATGCAAGCAATTGTTGTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~
EX753016       <-- CAAATGC................
EX892088       <-- CAAATGC................
EX751765       <-- CAAATGCAAGCAATTGTTGTCTC
EY935166       <-- CAAATGCgagt............
EY939180       --> .......................
FD950286       --> .......................
EY932894       --> .......................