RadishBase

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Alignment for radish unigene UN22064

               1      -     51
UN22064        --> GGGAGGCTGGCGCGTGCCTTATCTGCTTCTCTCTCTTCAGTGGTCTTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- ..................................................
FD977345       <-- ..................................................
EV544267       <-- ..................................................
FD952760       <-- ..................................................
EX907196       <-- ..................................................
FD949217       --> GGGAGGCTGGCGCGTGCCTTATCTGCTTCTCTCTCTTCAGTGGTCTTAAA
EX897267       --> ..................................................
FD956985       --> ..................................................
EX903058       --> ..................................................
EY933277       --> ..................................................
FD981619       --> ..................................................
EV535960       --> ..................................................
EX755062       --> ..................................................
EV548629       --> ..................................................
FY438644       --> ..................................................
FY438659       --> ..................................................

               51     -    101
UN22064        --> CGCTCTCTGTCTGATCCCACTAGTCTTCCTCCTCCTCCTTAACATCAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- ..................................................
FD977345       <-- ..................................................
EV544267       <-- ..................................................
FD952760       <-- ..................................................
EX907196       <-- ..................................................
FD949217       --> CGCTCTCTGTCTGATCCCACTAGTCTTCCTCCTCCTCCTTAACATCAAAA
EX897267       --> ............................ggCCTCCTCCTTAACATCAAAA
FD956985       --> ......................................ggAACATCAAAA
EX903058       --> ..................................................
EY933277       --> ..................................................
FD981619       --> ..................................................
EV535960       --> ..................................................
EX755062       --> ..................................................
EV548629       --> ..................................................
FY438644       --> ..................................................
FY438659       --> ..................................................

               101    -    151
UN22064        --> GCTCCATCACCAAAACCCTTTCACATTTTTTCAATGACTTCATCAATGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- ..................................................
FD977345       <-- ..................................................
EV544267       <-- ..................................................
FD952760       <-- ..................................................
EX907196       <-- ..................................................
FD949217       --> GCTCCATCACCAAAACCCTTTCACATTTTTTCAATGACTTCATCAATGGC
EX897267       --> GCTCCATCACCAAAACCCTTTCACATTTTTTCAATGACTTCATCAATGGC
FD956985       --> GCTCCATCACCAAAACCCTTTCACATTTTTTCAATGACTTCATCAATGGC
EX903058       --> .........................TTTTTTCAATGACTTCATCAATGGC
EY933277       --> .........................TTTTTTCAATGACTTCATCAATGGC
FD981619       --> .........................TTTTTTCAATGACTTCATCAATGGC
EV535960       --> ...............................CAATGACATCATCGATGGC
EX755062       --> .................................ATGACTTCATCAATGGC
EV548629       --> ..................................................
FY438644       --> ..................................................
FY438659       --> ..................................................

               151    -    201
UN22064        --> GTCCTCCTCCGTTTCTCCTGCTACTCAGCTTGGTTCGAGCAGAAGAGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD977345       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544267       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD952760       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX907196       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD949217       --> GTCCTCCTCCGTTTCTCCTGCTACTCAGCTTGGTTCGAGCAGAAGAGCTA  Raphanus sativus cv Early Scarlet Globe
EX897267       --> GTCCTCCTCCGTTTCTCCTGCTACTCAGCTTGGTTCGAGCAGAAGAGCTA  Raphanus sativus cv Early Scarlet Globe
FD956985       --> GTCCTCCTCCGTTTCTCCTGCTACTCAGCTTGGTTCGAGCAGAAGAGCTA  Raphanus sativus cv Rat-Tail Radish #3870
EX903058       --> GTCCTCCTCCGTTTCTCCTGCTACTCAGCTTGGTTCGAGCAGAAGAGCTA  Raphanus sativus cv Rat-Tail Radish #3870
EY933277       --> GTCCTCCTCCGTTTCTCCTGCTACTCAGCTTGGTTCGAGCAGAAGAGCTA  Raphanus sativus var. oleiformis
FD981619       --> GTCCTCCTCCCTTTCTCCTGCTACTCAGCTTGGTTCGAGCAGAAGAGCTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV535960       --> GTCCTCCTCCCTTTCTCCTGCTACTCAGCTTGGTTCGAGCAGAAGAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755062       --> GTCCTCCTCCCTTTCTCCTGCTACTCAGCTTGGTTCGAGCAGAAGAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548629       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438644       --> ..................................................  Raphanus sativus cv GSK3-1
FY438659       --> ..................................................  Raphanus sativus cv GSK3-1

               201    -    251
UN22064        --> TGTTGGCGATGTCGCGTGTGATGTTTGTGAAGCCAACGAGGACGAACCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD977345       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544267       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD952760       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX907196       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD949217       --> TGTTGGCGATGTCGCGTGTGATGTTTGTGAAGCCAACGAGGACGAACCAT  Raphanus sativus cv Early Scarlet Globe
EX897267       --> TGTTGGCGATGTCGCGTGTGATGTTTGTGAAGCCAACGAGGACGAACCAT  Raphanus sativus cv Early Scarlet Globe
FD956985       --> TGTTGGCGATGTCGCGTGTGATGTTTGTGAAGCCAACGAGGACGAACCAT  Raphanus sativus cv Rat-Tail Radish #3870
EX903058       --> TGTTGGCGATGTCGCGTGTGATGTTTGTGAAGCCAACGAGGACGAACCAT  Raphanus sativus cv Rat-Tail Radish #3870
EY933277       --> TGTTGGCGATGTCGCGTGTGATGTTTGTGAAGCCAACGAGGACGAACCAT  Raphanus sativus var. oleiformis
FD981619       --> TGTTGGCGATGTCGCGTGGGATGTTTGTGAAGCCAACGAGGACGAACCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV535960       --> TGTTGGCAATGTCGCGTGGGATGTTTGTGATGCCAACAAGGACGAATCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755062       --> TGTTGGCGATGTCGCGTGGGATGTTTGTGAAGCCAACAAGGACGAATCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548629       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438644       --> ..................................................  Raphanus sativus cv GSK3-1
FY438659       --> ..................................................  Raphanus sativus cv GSK3-1

               251    -    301
UN22064        --> CAGATGTTGAGAAAGGAGAAGATTGGTCTGAGAATTGCTTGTCAAGCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD977345       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544267       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD952760       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX907196       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD949217       --> CAGATGTTGAGAAAGGAGAAGATTGGTCTGAGAATTGCATGTCAAGCAAC  Raphanus sativus cv Early Scarlet Globe
EX897267       --> CAGATGTTGAGAAAGGAGAAGATTGGTCTGAGAATTGCATGTCAAGCAAC  Raphanus sativus cv Early Scarlet Globe
FD956985       --> CAGATGTTGAGAAAGGAGAAGATTGGTCTGAGAATTGCTTGTCAAGCAAC  Raphanus sativus cv Rat-Tail Radish #3870
EX903058       --> CAGATGTTGAGAAAGGAGAAGATTGGTCTGAGAATTGCTTGTCAAGCAAC  Raphanus sativus cv Rat-Tail Radish #3870
EY933277       --> CAGATGTTGAGAAAGGAGAAGATTGGTCTGAGAATTGCATGTCAAGCAAC  Raphanus sativus var. oleiformis
FD981619       --> CAGATGGTGAGGAAGGAGAAGATTGGTCTGAGAATTGCTTGTCAAGCAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV535960       --> CAGATGGTTAGGAAGGAGAAGATTGGTCTGAGAATTGCTTGTCAAGCAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755062       --> CAGATGGTGAGGAAGGAGAAGATTGGTCTGAGAATTGCTTGTCAAGCAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548629       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438644       --> ..................................................  Raphanus sativus cv GSK3-1
FY438659       --> ..................................................  Raphanus sativus cv GSK3-1

               301    -    351
UN22064        --> GAGTATTCCAGCAGACAACGTTCCGGATATGGAGAAGAGGAAGCTTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- ...........................gtctgagaattgcttGCTTTTGA  Raphanus raphanistrum subsp. maritimus
FD977345       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544267       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD952760       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX907196       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD949217       --> GAGTATTCCAGCAGAAAACGTTCCGGATATGGAGAAGAGGAAGCTTTTGA  Raphanus sativus cv Early Scarlet Globe
EX897267       --> GAGTATTCCAGCAGAAAACGTTCCGGATATGGAGAAGAGGAAGCTTTTGA  Raphanus sativus cv Early Scarlet Globe
FD956985       --> GAGTATACCAGCAGACAACGTTCCTGATATGGAGAAGAGGAAGCTTTTGA  Raphanus sativus cv Rat-Tail Radish #3870
EX903058       --> GAGTATACCAGCAGACAACGTTCCTGATATGGAGAAGAGGAAGCTTTTGA  Raphanus sativus cv Rat-Tail Radish #3870
EY933277       --> GAGTATTCCAGCAGAAAACGTTCCGGATATGGAGAAGAGGAAGCTTTTGA  Raphanus sativus var. oleiformis
FD981619       --> GAGTATTCCAGCAGACAACGTTCCGGATACGGAGAAGAGGAAGCTTTTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV535960       --> GAGTATTCCAGCAGAAAACGCTCCGGATATGGAGAAGAGGAAGCTTTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755062       --> GAGTATTCCAGCAGACAACGTTCCGGATATGGAGAAGAGGAAGCTTTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548629       --> ........gAGCAGACAACGTTCCTGATATGGAGAAGAGGAAGCTTTTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438644       --> ..................................................  Raphanus sativus cv GSK3-1
FY438659       --> ..................................................  Raphanus sativus cv GSK3-1

               351    -    401
UN22064        --> ATCTTCTTCTTGTGGGAGCTCTTTCTCTCCCTACTGGCTTCATGCTTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- ATCTTCTACTTGTGGGAGCTCTTTCTCTCCCTACTGGCTTCATGCTTGTC  Raphanus raphanistrum subsp. maritimus
FD977345       <-- ......TTCTTGTGGGAGCTCTTTCTCTCCCTACTGGCTTCATGCTTGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544267       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD952760       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX907196       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD949217       --> ATCTTCTACTTGTGGGAGCTCTTTCCCTTCCTACTGGCTTCATGCTTGTC  Raphanus sativus cv Early Scarlet Globe
EX897267       --> ATCTTCTACTTGTGGGAGCTCTTTCCCTTCCTACTGGCTTCATGCTTGTC  Raphanus sativus cv Early Scarlet Globe
FD956985       --> ATCTTCTTCTTGTGGGAGCTCTTTCTCTCCCTACTGGCTTCATGCTTGTC  Raphanus sativus cv Rat-Tail Radish #3870
EX903058       --> ATCTTCTTCTTGTGGGAGCTCTTTCTCTCCCTACTGGCTTCATGCTTGTC  Raphanus sativus cv Rat-Tail Radish #3870
EY933277       --> ATCTTCTACTTGTGGGAGCTCTTTCCCTTCCTACTGGCTTCATGCTTGTC  Raphanus sativus var. oleiformis
FD981619       --> ATCTTCTTCTTGTGGGAGCTCTTTCTCTCCCTACTGGCTTCATGCTTGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV535960       --> ATCTTCTTCTTGTGGGAGCTCTTTCTCTCCCTACTGGCTTCATGCTTGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755062       --> ATCTTCTTCTTGTGGGAGCTCTTTCTCTCCCTACTGGTTTCATGCTTGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548629       --> ATCTTCTTCTTGTGGGAGCTCTTTCTCTCCCTACTGGCTTCATGCTTGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438644       --> ..................................................  Raphanus sativus cv GSK3-1
FY438659       --> ..................................................  Raphanus sativus cv GSK3-1

               401    -    451
UN22064        --> CCTTACGCTACCTTCTTTGCCCCTCCTGGATCAGGAGGTGGGGGTGGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- CCTTACGCTACCTTCTTTGCCCCTCCTGGATCAGGAGGCGGGGGTGGTGG
FD977345       <-- CCTTACGCTACCTTCTTTGCCCCTCCTGGATCAGGAGGTGGGGGTGGTGG
EV544267       <-- ..............................TCAGGAGGTGGGGGTGGTGG
FD952760       <-- ..................................................
EX907196       <-- ..................................................
FD949217       --> CCTTACGCTACCTTCTTTGCCCC-CCTGGATCAGGAGGTGGGGGTGGTGG
EX897267       --> CCTTACGCTACCTTCCTTGCCCCTCCTGGATCAGGAGGTGGGGGTGGTGG
FD956985       --> CCTTACGCTACCTTCTTTGCCCCTCCTGGATCAGGAGGTGGGGGTGGTGG
EX903058       --> CCTTACGCTACCTTCTTTGCCCCTCCTGGATCAGGAGGTGGGGGTGGTGG
EY933277       --> CCTTACGCTACCTTCTTTGCCCCTCCTGGATCAGGAGGTGGGGGTGGTGG
FD981619       --> CCTTACGCTACCTTCTTTGCCCCTCCTGGATCAGGAGGTGGGGGTGGTGG
EV535960       --> CCTTACGCTACCTTCTTTGCCCCTCCTGGATCAGGAGGTGGGGGTGGTGG
EX755062       --> CCTTACGCTACCTTCTTTGCCCCTCCTGGATCAGGAGTGGGGGGTGGTGG
EV548629       --> CCTTACGCTACCTTCTTTGCCCCTCCTGGATCAGGAGGTGGGGGTGGTGG
FY438644       --> .....................................GTGGGGGTGGTGG
FY438659       --> .......................................GGGGGTGGTGG

               451    -    501
UN22064        --> TACACCAGCCAAGGATGCACTTGGAAACGATGTCGTTGCAGCAGAATGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- TACACCAGCCAAGGATGCACTTGGAAACGATGTCGTTGCAGCAGAATGGC
FD977345       <-- TACACCAGCCAAGGATGCACTTGGAAACGATGTCGTTGCAGCAGAATGGC
EV544267       <-- TACTCCAGCCAAGGATGCACTTGGAAACGATGTCGTTGCAGCAGAATGGC
FD952760       <-- ..................................................
EX907196       <-- ..................................................
FD949217       --> TACA..............................................
EX897267       --> TACACCAGCCAAGGATGCACTTGGAAACGATGTCGTTGCAGCAGAATGGC
FD956985       --> TACACCAGCCAAGGATGCACTTGGAAACGATGTCGTTGCAGCAGAATGGC
EX903058       --> TACACCAGCCAAGGATGCACTTGGAAACGATGTCGTTGCAGCAGAATGGC
EY933277       --> TACACCAGCCAAGGATGCACTTGGAAACGATGTCGTTGCAGCAGAATGGC
FD981619       --> TACACCAGCCAAGGATGCACTTGGAAACGATGTCGTTGCAGCAGAATGGC
EV535960       --> TACACCAGCCAAGGATGCACTTGGAAACGATGTCGTTGCAGCAGAATGGC
EX755062       --> TACACCAGCCAAGGATGCACTTGGAAACGATGTCGTTGCAGCAGAATGGC
EV548629       --> TACTCCAGCCAAGGATGCACTTGGAAACGATGTCGTTGCAGCAGAATGGC
FY438644       --> TACACCAGCCAAGGATGCACTTGGAAACGATGTCGTTGCAGCAGAATGGC
FY438659       --> TACACCAGCCAAGGATGCACTTGGAAACGATGTCGTTGCAGCAGAATGGC

               501    -    551
UN22064        --> TTAAGACTCATGGTCCTGGTGATCGAACATTGACCCAAGGATTGAAGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- TTAAGACTCATGGTCCTGGTGATCGAACATTGACCCAAGGATTGAAGGGA
FD977345       <-- TTAAGACTCATGGTCCTGGTGATCGAACATTGACCCAAGGATTGAAGGGA
EV544267       <-- TCAAGACTCATGGTGCTGGTGATCGAACATTGACCCAAGGATTGAAGGGA
FD952760       <-- ...........................CATTGACCCAAGGATTGAAGGGA
EX907196       <-- ..................................................
FD949217       --> ..................................................
EX897267       --> TTAAGACTCATGGTCCTGGTGATCGAACATTGACCCAAGGATTGAAGGGA
FD956985       --> TTAAGACTCATGGTCCTGGTGATCGAACATTGACCCAAGGATTGAAGGGA
EX903058       --> TTAAGACTCATGGTCCTGGTGATCGAACATTGACCCAAGGATTGAAGGGA
EY933277       --> TTAAGACTCATGGTCCTGGTGATCGAACATTGACCCAAGGATTGAAGGGA
FD981619       --> TTAAGACTCATGGTCCTGGTGATCGAACATTGACCCAAGGATTGAAGGGA
EV535960       --> TTAAGACTCATGGTCCTGGTGATCGAACATTGACCCAAGGATTGAAGGGA
EX755062       --> TTAAGACTCATGGTCCTGGTGATCGAACATTGACCCAAGGATTGAAGGGA
EV548629       --> TCAAGACTCATGGTGCTGGTGATCGAACATTGACCCAAGGATTGAAGGGA
FY438644       --> TTAAGACTCATGGTCCTGGTGATCGAACATTGACCCAAGGATTGAAGGGA
FY438659       --> TTAAGACTCATGGTCCTGGTGATCGAACATTGACCCAAGGATTGAAGGGA

               551    -    601
UN22064        --> GATCCAACTTACCTAGTTGTGGAGAACGACAAAACTCTAGCGACCTACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- GATCCAACTTACCTAGTTGTGGAGAACGACAAGACTCTAGCGACCTACGG  Raphanus raphanistrum subsp. maritimus
FD977345       <-- GATCCAACATACCTAGTTGTGGAGAACGACAAAACTCTATCCACCTACGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544267       <-- GATCCAACATACCTAGTTGTGGAGAACGACAAAACTCTAGCGACCTACGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD952760       <-- GATCCAACTTACCTAGTTGTGGAGAACGACAAAACTCTAGCGACCTACGG  Raphanus sativus cv Rat-Tail Radish #3870
EX907196       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD949217       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX897267       --> GATCCAACTTACCTAGTTGTGGAGAACGACAAAACTCTAGCGACCTACGG  Raphanus sativus cv Early Scarlet Globe
FD956985       --> GATCCAACTTACCTAGTTGTGGAGAACGACAAAACTCTAGCGACCTACGG  Raphanus sativus cv Rat-Tail Radish #3870
EX903058       --> GATCCAACTTACCTAGTTGTGGAGAACGACAAAACTCTAGCGACCTACGG  Raphanus sativus cv Rat-Tail Radish #3870
EY933277       --> GATCCAACTTACCTAGTTGTGGAGAACGACAAAACTCTAGCGACCTACGG  Raphanus sativus var. oleiformis
FD981619       --> GATCCAACATACCTAGTTGTGGAGAACGACAAAACTCTATCCACCTACGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV535960       --> GATCCAACTTACCTAGTTGTGGAGAACGACAAAACTCTAGCTACCTATGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755062       --> GATCCAACTTACCTAGTTGTGGAGAACGACAAGACACTAGCGACCTACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548629       --> GATCCAACATACCTAGTTGTGGAGAACGACAAAACTCTAGCGACCTACGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438644       --> GATCCAACTTACCTAGTTGTGGAGAACGACAAAACTCTAGCGACCTACGG  Raphanus sativus cv GSK3-1
FY438659       --> GATCCAACTTACCTAGTTGTGGAGAACGACAAAACTCTAGCGACCTACGG  Raphanus sativus cv GSK3-1

               601    -    651
UN22064        --> TATAAACGCAGTGTGCACTCATCTTGGATGTGTTGTTCCATGGAACAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- TATAAACGCAGTGTGCACTCATCTTGGATGTGTTGTTCCATGGAACAAAG
FD977345       <-- TATAAACGCAGTGTGCACTCATTTTGGATGTGTTGTTCCATGGAACAAAG
EV544267       <-- TATAAACGCAGTGTGCACTCATCTTGGATGTGTTGTTCCATGGAACAAAG
FD952760       <-- TATAAACGCAGTGTGCACTCATCTTGGATGTGTTGTTCCATGGAACAAAG
EX907196       <-- ..................................GTTCCATGGAACAAAG
FD949217       --> ..................................................
EX897267       --> TATAAACGCAGTGTGCACTCATCTTGGATGTGTTGTTCCATGGAACAAAG
FD956985       --> TATAAACGCAGTGTGCACTCATCTTGGATGTGTTGTTCC...........
EX903058       --> TATAAACGCAGTGTGCACTCATCTTGGATGTGTTGTTCCATGGAACAAAG
EY933277       --> TATAAACGCAGTGTGCACTCATCTTGGATGTGTTGTTCCATGGAACAAAG
FD981619       --> TATAAACGCAGTGTGCACTCATCTTGGATGTGTTGTTCCATGGAACAAAG
EV535960       --> TATAAACGCAGTGTGCACTCATCTTGGATGTGTTGTTCCATGGAACAAAG
EX755062       --> TATAAACGCAGTGTGCACTCATCTTGGATGTGCTGTTCCATGGAAC----
EV548629       --> TATAAACGCAGTGTGCACTCATCTTGGATGTGTTGTTCCATGGAACAAAG
FY438644       --> TATAAACGCAGTGTGCACTCATCTTGGATGTGTTGTTCCATGGAACAAAG
FY438659       --> TATAAACGCAGTGTGCACTCATCTTGGATGTGTTGTTCCATGGAACAAAG

               651    -    701
UN22064        --> CTGAGAACAAGTTCCTATGTCCTTGCCATGGATCACAATACAACGCCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- CTGAGAACAAGTTCCTATGTCCCTGCCATGGATCGCAATACAACGCCCAA
FD977345       <-- CTGAGAACAAGTTCCTATGTCCTTGCCATGGATCACAATACAACGCTCAA
EV544267       <-- CTGAGAACAAGTTCCTATGTCCTTGCCATGGATCACAATACAACGCCCAA
FD952760       <-- CTGAGAACAAGTTCCTATGTCCTTGCCATGGATCACAATACAACGCTCAA
EX907196       <-- CTGAGAACAAGTTCCTATGTCCTTGCCATGGATCACAATACAACGCTCAA
FD949217       --> ..................................................
EX897267       --> CTGAGAACAAGTTCCTATGTCCTTGCCATGGATCACAATACAACGCCCAA
FD956985       --> ..................................................
EX903058       --> CTGAGAACAAGTTCCTATGTCCTTGCCATGGATCACAATACAACGCTCAA
EY933277       --> CTGAGAACAAGTTCCTATGTCCTTGCCATGGATCACAATACAACGCCCAA
FD981619       --> CTGAGAACAAGTTCCTATGTCCTTGCCATGGATCACAATACAACGCTCAA
EV535960       --> CTGAGAACAAGTTCCTATGTCCTTGCCATGGGTCACAATACAACGCCCAA
EX755062       --> CTGAGAACAAGTTCCTATGTCCTTGCCATGGATCACAATACAACGCCCAA
EV548629       --> CTGAGAACAAGTTCCTATGTCCTTGCCATGGATCACAATACAACGCCCAA
FY438644       --> CTGAGAACAAGTTCCTATGTCCTTGCCATGGATCACAATACAACGCCCAA
FY438659       --> CTGAGAACAAGTTCCTATGTCCTTGCCATGGATCACAATACAACGCCCAA

               701    -    751
UN22064        --> GGCAGAGTCGTTAGAGGTCCAGCACCATTGTCGCTTGCCTTGGCTCATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- GGCAGAGTCGTTAGAGGTCCAGCACCATTGTCGCTTGCCTTGGCTCACGC  Raphanus raphanistrum subsp. maritimus
FD977345       <-- GGCAGAGTCGTTAGAGGTCCAGCACCATTGTCGCTTGCCTTGGCTCATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544267       <-- GGGAGAGTCGTTAGAGGTCCAGCACCATTGTCGCTTGCCTTGGCTCACGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD952760       <-- GGCAGAGTAGTTAGAGGTCCAGCACCATTGTCGCTTGCCTTGGCTCATGC  Raphanus sativus cv Rat-Tail Radish #3870
EX907196       <-- GGCAGAGTAGTTAGAGGTCCAGCACCATTGTCGCTTGCCTTGGCTCATGC  Raphanus sativus cv Rat-Tail Radish #3870
FD949217       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX897267       --> GGCAGAGTCGTTAGAGGTCCAGCACCATTGTCGCTTGCCTTAGCTCACGC  Raphanus sativus cv Early Scarlet Globe
FD956985       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX903058       --> G-CAGAGTAGTTAGAGGTCCAGCACCATTGTCGCTTGCCTTGGCTCATGC  Raphanus sativus cv Rat-Tail Radish #3870
EY933277       --> GGCAGAGTCGTTAGAGGTCCAGCACCATTGTCGCTTGCCTTAGCTCACGC  Raphanus sativus var. oleiformis
FD981619       --> GGCAGAGTCGTTAGAGGTCCAGCACCATTGTCGCTTGCCTTGGCTCATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV535960       --> GGCAGAGTCGTTAGAGGTCCAGCACCATTGTCGCTTGCCTTGGCTCATGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755062       --> GGCAGAGTCGTCAGAGGTCCAGCACCATTGTCGCTTGCCTTGGCTCATGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548629       --> GGGAGAGTCGTTAGAGGTCCAGCACCATTGTCGCTTGCCTTGGCTCACGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438644       --> GGCAGAGTCGTTAGAGGTCCAGCACCATTGTCGCTTGCCTTAGCTCACGC  Raphanus sativus cv GSK3-1
FY438659       --> GGCAGAGTCGTTAGAGGTCCAGCACCATTGTCGCTTGCCTTAGCTCACGC  Raphanus sativus cv GSK3-1

               751    -    801
UN22064        --> GGATATTGATGATAGTGGAAAGGTTCTATTTGTTCCATGGGTTGAAACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- GGATATTGATGACAGTGGAAAGGTTCTATTTGTTCCATGGGTTGAAACTG
FD977345       <-- GGATATTGATGATAGTGGAAAGGTTTTATTTGTTCCATGGGTTGAAACTG
EV544267       <-- GGATATTGATGACAGTGGAAAGGTTCTATTTGTTCCATGGGTTGAAACTG
FD952760       <-- GGATATTGATGACAGTGGAAAGGTTCTATTTGTTCCATGGGTTGAAACTG
EX907196       <-- GGATATTGATGACAGTGGAAAGGTTCTATTTGTTCCATGGGTTGAAACTG
FD949217       --> ..................................................
EX897267       --> GGATATTGATGATAGTGG................................
FD956985       --> ..................................................
EX903058       --> GGATATTGATGACAGTG.................................
EY933277       --> GGATATTGATGATAGTG.................................
FD981619       --> GGATATTGATGATAGTGGAAAGGTTCTATTTGTTCCATGGGTTGAAACTG
EV535960       --> CGATATTGATGATAGTGGAAAGGTTCTATTTGTTCCATGGGTTGAAACTG
EX755062       --> GGATATTGATGATAGTGGAAAGGTTCTATTTGTTCCATGGGTTGAAACTG
EV548629       --> GGATATTGATGACAGTGGAAAGGTTCTATTTGTTCCATGGGTTGAAACTG
FY438644       --> GGATATTGATGATAGTGGAAAGGTTCTATTTGTTCCGTGGGTTGAAACTG
FY438659       --> GGATATTGATGATAGTGGAAAGGTTCTATTTGTTCCGTGGGTTGAAACTG

               801    -    851
UN22064        --> ACTTCAGGACTGGTGATGCTCCATGGTGGTCTTAAAACTCTGCAACAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- ACTTCAGGACTGGTGATGCTCCATGGTGGTCTTAAAACTCTGCAACAACT
FD977345       <-- ACTTCAGGACTGGTGATGCTCCATGGTGGTCTTAAAACTCCGCAACAACT
EV544267       <-- ACTTCAGGACTGGTGATGCTCCATGGTGGTCTTAAAACTCTGCAACAACT
FD952760       <-- ACTTCAGGACTGGTGATGCTCCATGGTGGTCTTAAAACTCTGCAACAACT
EX907196       <-- ACTTCAGGACTGGTGATGCTCCATGGTGGTCTTAAAACTCTGCAACAACT
FD949217       --> ..................................................
EX897267       --> ..................................................
FD956985       --> ..................................................
EX903058       --> ..................................................
EY933277       --> ..................................................
FD981619       --> ACTTCAG-ACTGGTGATGCTCCATGGTGGTCTTAAA-CTCCGCA-CA-CT
EV535960       --> ACT...............................................
EX755062       --> ACTTCAG-ACTGGTGATGCTCCATGGTGGTCTaaacgctgcacactcttt
EV548629       --> ACTTCAGGACTGGTGATGCTCCATGGTGGTCTTAAAACTCTGCAACAACT
FY438644       --> ACTTCAGGACTGGTGATGCTCCATGGTGGTCTTAAAACTCTGCAACAACT
FY438659       --> ACTTCAGGACTGGTGATGCTCCATGGTGGTCTTAAAACTCTGCAACAACT

               851    -    901
UN22064        --> CTTTTTGTGGGAAGACTTGTTTGGATGTTCTTATAATGTAAAAGCTGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- CTT--TGTGGGAAGACTTGTTTGGATGTTCTTATAATGTAAAAGCTGTGT
FD977345       <-- CTTTTTGTGGGAAGACTTGTTTGGATGTTCTTATAATGTAAAAGCTGTGT
EV544267       <-- CTT--TGTGGGAAGACTTGTTTGGATGTTCTTATAATGTAAAAGCTGTGT
FD952760       <-- CTTTTTGTGGGAAGACTTGTTTGGATGTTCTTATAATGTAAAAGCTGTGT
EX907196       <-- CTTTTTGTGGGAAGACTTGTTTGGATGTTCTTATAATGTAAAAGCTGTGT
FD949217       --> ..................................................
EX897267       --> ..................................................
FD956985       --> ..................................................
EX903058       --> ..................................................
EY933277       --> ..................................................
FD981619       --> CTTTTT............................................
EV535960       --> ..................................................
EX755062       --> ..................................................
EV548629       --> CTTT--GTGGGAAGACTTGTTTGGATGTTCTTATAATGTAAAAGCTGTGT
FY438644       --> CTTTTTGTGGGAAGACTTGTTTGGATGTTCTTATAATGTAAAAGCTGTGT
FY438659       --> CTTTTTGTGGGAAGACTTGTTTGGATGTTCTTATAATGTAAAAGCTGTGT

               901    -    951
UN22064        --> GTAATCATACATTTCATGGCATTTTACTCTGTGAATTCTTGCCTCTTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- GTAATCATACATTTCGTGGCATTTTACTCTGTGAATTCTTGCCTCTTATA
FD977345       <-- GTAATCATACATTTCATGGCATTTTACTCTGTGAATTCTTGCCTCTAGTA
EV544267       <-- GTAATCATACATTTCGTGGCATTTTACTCTGTGAATTCTTGCCTCTTATA
FD952760       <-- GTAATCATACATTTCAAGGCATTTTACTCTGTGAATTCTTGCCTCTTATA
EX907196       <-- GTAATCATACATTTCAAGGCATTTTACTCTGTGAATTCTTGCCTCTTATA
FD949217       --> ..................................................
EX897267       --> ..................................................
FD956985       --> ..................................................
EX903058       --> ..................................................
EY933277       --> ..................................................
FD981619       --> ..................................................
EV535960       --> ..................................................
EX755062       --> ..................................................
EV548629       --> GTAATCATACATTTCGTGGCATTTTACTCTGTGAATTCTTGCCTCTTATA
FY438644       --> GTAATCATACATTTCATGCCATTTTACTCTGTGAATTCTTGCCTCTTATA
FY438659       --> GTAATCATACATTTCATGCCATTTTACTCTGTGAATTCTTGCCTCTTATA

               951    -   1001
UN22064        --> TGAATTTTATGTTCACTCACTACTTCCCATGTCTTATGTTTAATTTTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959515       <-- TGAATTTTATGTTCACTC................................
FD977345       <-- TGAATTTTATGTTCATTCACT.............................
EV544267       <-- TGAATTTTATG.......................................
FD952760       <-- TGAATTTTATGTTCACcc................................
EX907196       <-- TGAATTTTATGTTCACTCACTACTTCCCATGTCTTATGTTTAATTTTTCA
FD949217       --> ..................................................
EX897267       --> ..................................................
FD956985       --> ..................................................
EX903058       --> ..................................................
EY933277       --> ..................................................
FD981619       --> ..................................................
EV535960       --> ..................................................
EX755062       --> ..................................................
EV548629       --> TGAATTTTATGTTCACTCACTACTTCCCATGTC--ATGTTTAATTTTcac
FY438644       --> TGAATTTTATGTTCATTCACT.............................
FY438659       --> TGAATTTTATGTTCATTCACT.............................

               1001   -   1051
UN22064        --> CAT
                   ~~~
FD959515       <-- ...
FD977345       <-- ...
EV544267       <-- ...
FD952760       <-- ...
EX907196       <-- CAT
FD949217       --> ...
EX897267       --> ...
FD956985       --> ...
EX903058       --> ...
EY933277       --> ...
FD981619       --> ...
EV535960       --> ...
EX755062       --> ...
EV548629       --> a..
FY438644       --> ...
FY438659       --> ...