1      -     51
UN22082        --> GGATATACAAATGCTTGCACTTACCAAGGAAAA-GAAAA-GTTTAGTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936620       <-- GGATATACAAATGCTTGCACTTACCAAGGAAAA-GAAAAAGTTTAGTTAA
FD582877       <-- ............................ggAAA-GAAAA-GTTTAGTTAA
EV573862       <-- ..............................gggaaAAAA-GTTTAGTTAA
FD539583       <-- ......................................ggGTTTAGTTAA
FD974594       <-- ..................................................
FD976536       <-- ..................................................
FD538880       <-- ..................................................
FD940832       --> GGATATACAAATGCTTGCACTTACCAAGGAAAA-GAAAAAGTTTAGTTAA
FD978322       --> ..ggATACAAATGCTTGCACTTACCAAGGAAAAAGAAAA-GTTTAGTTAA
EX906034       --> ............................ggAAA-GAAAA-GTTTAGTTAA
EY947975       --> ............................ggAAA-GAAAA-GTTTAGTTAA
FD578768       --> ............................ggAAA-GAAAA-GTTTAGTTAA
EV569285       --> ..............................gggaaAAAA-GTTTAGTTAA
FD542942       --> ..................................ggAAA-GTTTGGTTAA
FD543832       --> ......................................ggGTTTAGTTAA
FD971274       --> ......................................gggtcTAGTTAA
FD980675       --> ..............................................ggAA
EX748479       --> ..................................................

               51     -    101
UN22082        --> AATCAAAAGATCGTGATATCGCAGTTGAGATTAAATGGCGATGGAAATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936620       <-- ACTCAAAAGATCGTGATATCGCAGTTGAGATTAAATGGCGATGGAAATAG  Raphanus sativus var. oleiformis
FD582877       <-- AATCAAAAGATCGTGATATCGCAGTTGAGATTAAATGGCGATGGAAATAG  Raphanus sativus cv Rat-Tail Radish #3870
EV573862       <-- ACTCAAAAGATCGTGATATCGCAGTTGAGATTAAATGGCGATGGAAATAG  Raphanus raphanistrum subsp. landra
FD539583       <-- AATCAAAAGATCGTGATATCGCAGTTGAGATTAAATGGCGATGGAAATAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974594       <-- .........ATCGTGATATCGCAGTTGAGATTAAATGGCGATGGAAATAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976536       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538880       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD940832       --> ACTCAAAAGATCGTGATATCGCAGTTGAGATTAAATGGCGATGGAAATAG  Raphanus sativus var. oleiformis
FD978322       --> AATCAAAAGATCGTGATATCGCAGTTGAGATTAAATGGCGATGGAAATAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX906034       --> AATCAAAAGATCGTGATATCGCAGTTGAGATTAAATGGCAATGGAAATAG  Raphanus sativus cv Rat-Tail Radish #3870
EY947975       --> AATCAAAAGATCGTGATATCGCAGTTGAGATTAAATGGCAATGGAAATAG  Raphanus sativus cv Rat-Tail Radish #3870
FD578768       --> AATCAAAAGATCGTGATATCGCAGTTGAGATTAAATGGCGATGGAAATAG  Raphanus sativus cv Rat-Tail Radish #3870
EV569285       --> ACTCAAAAGATCGTGATATCGCAGTTGAGATTAAATGGCGATGGAAATAG  Raphanus raphanistrum subsp. landra
FD542942       --> ACTCAAAAGATCGTGATATCGCAGTTGAGATTAAATGGCGATGGAAATAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543832       --> AATCAAAAGATCGTGATATCGCAGTTGAGATTAAATGGCGATGGAAATAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971274       --> AATCAAAAGATCGTGATATCGCAGTTGAGATTAAATGGCGATGGAAATAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980675       --> AATCAAAAGATCGTGATATCGCAGTTGAGATTAAATGGCGATGGAAATAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748479       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               101    -    151
UN22082        --> CAACTCCGATTCATGCACCGGTTACACCTCCGGCGAGCAACCTCATCATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936620       <-- CAACTCCGATTCATGCACCGGTTACACCTCCGGCGAGCAACCTCATCATA  Raphanus sativus var. oleiformis
FD582877       <-- CAACTCCGATTCATGCACCGGTTACACCTCCGGCGAGCAACCTCATCATA  Raphanus sativus cv Rat-Tail Radish #3870
EV573862       <-- CAACTCCGATTCATGCACCGGTTACACCTCCGGCGAGCAACCTCATCATA  Raphanus raphanistrum subsp. landra
FD539583       <-- CAACTCCGGTTCATGCACCGGTTACACCTCCGGCGAGCAACCTCATCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974594       <-- CAACTCCGATTCATGCACCGGTTACACCTCCGGCGAGCAACCTCATCATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976536       <-- ....................................GCAACCTCATCATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538880       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD940832       --> CAACTCCGATTCATGCACCGGTTACACCTCCGGCGAGCAACCTCATCATA  Raphanus sativus var. oleiformis
FD978322       --> CAACTCCGATTCATGCACCGGTTACACCTCCGGCGAGCAACCTCATCATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX906034       --> CAACTCCGATTCATGCACCGGTCACACCTCCGGCGAGCAACCTCATTATA  Raphanus sativus cv Rat-Tail Radish #3870
EY947975       --> CAACTCCGATTCATGCACCGGTCACACCTCCGGCGAGCAACCTCATTATA  Raphanus sativus cv Rat-Tail Radish #3870
FD578768       --> CAACTCCGATTCATGCACCGGTTACACCTCCGGCGAGCAACCTCATCATA  Raphanus sativus cv Rat-Tail Radish #3870
EV569285       --> CAACTCCGATTCATGCACCGGTTACACCTCCGGCGAGCAACCTCATCATA  Raphanus raphanistrum subsp. landra
FD542942       --> CAACTCCGGTTCATGCACCGGTTACACCTCCGGCGAGCAACCTCATCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543832       --> CAACTCCGGTTCATGCACCGGTTACACCTCCGGCGAGCAACCTCATCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971274       --> CAACTCCGGTTCATGCACCGGTTACACCTCCGGCGAGCAACCTCATCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980675       --> CAACTCCGATTCATGCACCGGTTACACCTCCGGCGAGCAACCTCATCATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748479       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               151    -    201
UN22082        --> TCAGCAACAACGGCCGCAGAAACTCAGAAGAAGAACAGGATTCAAGTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936620       <-- TCAGCAACAACGGCCGCAGAAACTCAAAAGAAGAACAGGATTCAAGTTTC  Raphanus sativus var. oleiformis
FD582877       <-- TCAGCAACAACGGCCGCAGAAACTCAAAAGAAGAACAGGATTCAAGTTTT  Raphanus sativus cv Rat-Tail Radish #3870
EV573862       <-- TCAGCAACAACGGCCGCAGAAACTCAGAAGAAAAACAGGATTCAAGTTTC  Raphanus raphanistrum subsp. landra
FD539583       <-- TCAGCAACGACGGCCGGAGAAACTCAGAAGAAGAACAGGATTCAAGTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974594       <-- TCAGCAACAACGGCCGCAGAAACTCAAAAGAAGAACAGGATTCAAGTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976536       <-- TCAGCAACAACGGCCGCAGAAACTCAAAAGAAGAACAGGATTCAAGTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538880       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD940832       --> TCAGCAACAACGGCCGCAGAAACTCAAAAGAAGAACAGGATTCAAGTTTC  Raphanus sativus var. oleiformis
FD978322       --> TCAGCAACAACGGCCGCAGAAACTCAAAAGAAGAACAGGATTCAAGTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX906034       --> TCAGCAACAACGGCCGCAGAAACTCAGAAGAAGAACAGGATTCAAGTTTC  Raphanus sativus cv Rat-Tail Radish #3870
EY947975       --> TCAGCAACAACGGCCGCAGAAACTCAGAAGAAGAACAGGATTCAAGTTTC  Raphanus sativus cv Rat-Tail Radish #3870
FD578768       --> TCAGCAACAACGGCCGCAGAAACTCAAAAGAAGAACAGGATTCAAGTTTC  Raphanus sativus cv Rat-Tail Radish #3870
EV569285       --> TCAGCAACAACGGCCGCAGAAACTCAGAAGAAAAACAGGATTCAAGTTTC  Raphanus raphanistrum subsp. landra
FD542942       --> TCAGCAACGACGGCCGGAGAAACTCAGAAGAAGAACAGGATTCAAGTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543832       --> TCAGCAACGACGGCCGGAGAAACTCAGAAGAAGAACAGGATTCAAGTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971274       --> TCAGCAACGACGGCCGGAGAAACTCAGAAGAAGAACAGGATTCAAGTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980675       --> TCAGCAACAACGGCCGCAGAAACTCAAAAGAAGAACAGGATTCAAGTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748479       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               201    -    251
UN22082        --> TAACACCAAGAAACCCTTGTTCTTCTACGTTAATCTCGCCAAGAGGTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936620       <-- TAACACCAAGAAACCCTTGTTTTTTTACGTTAATCTCGCCAAGAGGTACA
FD582877       <-- TAACACCAAGAAACCCTTGTTTTTTTACGTTAATCTCGCCAAGAGGTACA
EV573862       <-- TAACACCAAGAAACCCTTGTTTTTTTACGTTAATCTCGCCAAGAGGTACA
FD539583       <-- TAACACCAAGAAACCCTTGTTTTTTTACGTTAATCTCGCCAAGAGGTACA
FD974594       <-- TAACACCAAGAAACCCTTGTTCTTCTACGTTAATCTCGCCAAGAGGTACA
FD976536       <-- TAGCACCAAGAAACCCTTGTTCTTCTACGTTAATCTCGCCAAGAGGTACA
FD538880       <-- ......................................CCAAGAGGTACA
FD940832       --> TAACACCAAGAAACCCTTGTTCTTCTACGTTAATCTCGCCAAGAGGTACA
FD978322       --> TAACACCAAGAAACCCTTGTTCTTCTACGTTAATCTCGCCAAGAGGTACA
EX906034       --> TAACACCAAGAAACCCTTGTTCTTCTACGTTAATCTCGCCAAGAGGTACA
EY947975       --> TAACACCAAGAAACCCTTGTTCTTCTACGTTAATCTCGCCAAGAGGTACA
FD578768       --> TAACACCAAGAAACCCTTGTTCTTCTACGTTAATCTCGCCAAGAGGTACA
EV569285       --> TAACACCAAGAAACCCTTGTTCTTCTACGTTAATCTCGCCAAGAGGTACA
FD542942       --> TAACACCAAGAAACCCTTGTTCTTCTACGTTAATCTCGCCAAGAGGTACA
FD543832       --> TAACACCAAGAAACCCTTGTTCTTCTACGTTAATCTCGCCAAGAGGTACA
FD971274       --> TAACACCAAGAAACCCTTGTTCTTCTACGTTAATCTCGCCAAGAGGTACA
FD980675       --> TAGCACCAAGAAACCCTTGTTCTTCTACGTTAATCTCGCCAAGAGGTACA
EX748479       --> ..................................................

               251    -    301
UN22082        --> TTCAACAACACAACGAGGTTGAGCTTTCTGCACTTGGAATGGCAATCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936620       <-- TTCAACAACACAACGAGGTTGAGCTTTCCGCCCTTGGAATGGCAATCACA
FD582877       <-- TTCAACAACACAACGAGGTTGAGCTTTTTGCACTTGGAATGGCAATCACA
EV573862       <-- TTCAACAACACAACGAGGTTGAGCTTTCTGCACTTGGAATGGCAATCACA
FD539583       <-- TTCAACAACACAACGAGGTTGAGCTTTTTGCACTTGGAATGGCAATCACA
FD974594       <-- TTCAACAACACAACGAGGTTGAGCTTTCTGCACTTGGAATGGCAATCACA
FD976536       <-- TTCAACAACACAACGAGGTTGAGCTTTCTGCACTTGGAATGGCAATCACA
FD538880       <-- TTCAACAACACAACGAGGTTGAGCTTTCTGCACTTGGAATGGCAATCACA
FD940832       --> TTCAACAACACAACGAGGTTGAGCTTTCCGCCCTTGGAATGGCAATCACA
FD978322       --> TTCAACAACACAACGAGGTTGAGCTTTCTGCACTTGGAATGGCAATCACA
EX906034       --> TTCAACAACACAACGAGGTTGAGCTTTCTGCACTTGGAATGGCAATCACA
EY947975       --> TTCAACAACACAACGAGGTTGAGCTTTCTGCACTTGGAATGGCAATCACA
FD578768       --> TTCAACAACACAACGAGGTTGAGCTTTCTGCACTTGGAATGGCAATCACA
EV569285       --> TTCAACAACACAACGAGGTTGAGCTTTCTGCACTTGGAATGGCAATCACA
FD542942       --> TTCAACAACACAACGAGGTTGAGCTTTCTGCACTTGGAATGGCAATCACA
FD543832       --> TTCAACAACACAACGAGGTTGAGCTTTCTGCACTTGGAATGGCAATCACA
FD971274       --> TTCAACAACACAACGAGGTTGAGCTTTCTGCACTTGGAATGGCAATCACA
FD980675       --> TTCAACAACACAACGAGGTTGAGCTTTCTGCACTTGGAATGGCAATCACA
EX748479       --> ..................................................

               301    -    351
UN22082        --> ACAGTGGTTACCATCTCAGAAATATTGAAGAACAATGGGCTTGCAACAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936620       <-- ACAGTGGTTACCATTTCAGAAATTTTGAAGAACAATGGGCTTGCAACAGA
FD582877       <-- ACAGTGGTTACCATTTCAGAAATATTGAAGAACAATGGGCTTGCAACAGA
EV573862       <-- ACAGTGGTTACCATTTCAGAAATATTGAAGAACAATGGGCTTGCAACAGA
FD539583       <-- ACAGTGGTTACCATTTCAGAAATATTGAAGAACAATGGGCTTGCAACAGA
FD974594       <-- ACAGTGGTTACCATCTCAGAAATATTGAAGAACAATGGGCTTGCAACAGA
FD976536       <-- ACAGTGGTTACCATTTCAGAAATATTGAAGAACAATGGGCTTGCAACAGA
FD538880       <-- ACAGTGGTTACCATTTCAGAAATATTGAAGAACAATGGGCATGCAACAGA
FD940832       --> ACAGTGGTTACCATCTCAGAAATTTTGAAGAACAATGGGCTTGCAACAGA
FD978322       --> ACAGTGGTTACCATCTCAGAAATATTGAAGAACAATGGGCTTGCAACAGA
EX906034       --> ACAGTGGTTACCATCTCAGAA-TCTTGAAGAACAATGGACTTGCAGCAGA
EY947975       --> ACAGTGGTTACCATCTCAGAA-TCTTGAAGAACAATGGACTTGCAGCAGA
FD578768       --> ACAGTGGTTACCATCTCAGAAATATTGAAGAACAATGGGCTTGCAACAGA
EV569285       --> ACAGTGGTTACCATCTCAGAAATATTGAAGAACAATGGGCTTGCAACAGA
FD542942       --> ACAGTGGTTACCATCTCAGAAATATTGAAGAACAATGGGCATGCAACAGA
FD543832       --> ACAGTGGTTACCATCTCAGAAATATTGAAGAACAATGGGCTTGCAACAGA
FD971274       --> ACAGTGGTTACCATCTCAGAAATATTGAAGAACAATGGGCTTGCAACAGA
FD980675       --> ACAGTGGTTACCATCTCAGAAATATTGAAGAACAATGGGCTTGCAACAGA
EX748479       --> ..................................................

               351    -    401
UN22082        --> GAAGAAAGTTCTGACATCGACAGTGGGAATGAAAGACGAGGTCAAAGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936620       <-- GAAGAAAGTTCTGACTTCGACAGTGGGAATGAAAGACGAGGTCAAAGGGA  Raphanus sativus var. oleiformis
FD582877       <-- GAA---GATTTTGACATCGACAGTGGGAATGAAAGACGAGATCAAAGGGA  Raphanus sativus cv Rat-Tail Radish #3870
EV573862       <-- GAAGAAAGTTCTGACATCGACAGTGGGAATGAAAGACGAGGTCAAAGGGA  Raphanus raphanistrum subsp. landra
FD539583       <-- GAAGAAAGTTTTGACATCGACAGTGGGAATGAAAGACGAGGTCAAAGGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974594       <-- GAAGAGAGTTCTGACATCGACAGTGGGAATGAAAGACGAGATCAAAGGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976536       <-- GAAGAGAGTTCTGACATCGACAGTGGGAATGAAAGACGAGATCAAAGGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538880       <-- GAAGAAAGTTTTGACATCGACAGTGGGAATGAAAGACGAGGTCAAAGGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD940832       --> GAAGAAAGTTCTGACTTCGACAGTGGGAATGAAAGACGAGGTCAAAGGGA  Raphanus sativus var. oleiformis
FD978322       --> GAAGAGAGTTCTGACATCGACAGTGGGAATGAAAGACGAGATCAAAGGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX906034       --> GAAGAAAGTTCTGACATCGACAGTGGGAATGAAAGACGAGGTCAAAGGGA  Raphanus sativus cv Rat-Tail Radish #3870
EY947975       --> GAAGAAAGTTCTGACATCGACAGTGGGAATGAAAGACGAGGTCAAAGGGA  Raphanus sativus cv Rat-Tail Radish #3870
FD578768       --> GAAGA---TTCTGACATCGACAGTGGGAATGAAAGACGAGATCAAAGGGA  Raphanus sativus cv Rat-Tail Radish #3870
EV569285       --> GAAGAAAGTTCTGACATCGACAGTGGGAATGAAAGACGAGGTCAAAGGGA  Raphanus raphanistrum subsp. landra
FD542942       --> GAAGAAAGTTCTGACATCGACAGTGGGAATGAAAGACGAGGTCAAAGGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543832       --> GAAGAAAGTTCTGACATCGACAGTGGGAATGAAAGACGAGGTCAAAGGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971274       --> GAAGAAAGTTCTGACATCGACAGTGGGAATGAAAGACGAGGTCAAAGGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980675       --> GAAGAGAGTTCTGACATCGACAGTGGGAATGAAAGACGAGATCAAAGGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748479       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN22082        --> AAATAGTTCAGAAGACAAAGATTGAGATTGTGTTGGGGAAATCAGATAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936620       <-- AAATAGTTCAGAAGACAAAGATTGAGATTGTGTTGGGGAAATCAGATAAA  Raphanus sativus var. oleiformis
FD582877       <-- AAATAGTTCAGAAGACAAAGATTGAGATTGTGTTGGGGAAATCAGATAAA  Raphanus sativus cv Rat-Tail Radish #3870
EV573862       <-- AAATAGTTCAGAAGACAAAGATAGAGATTGTGTTGGGGAAATCAGATAAA  Raphanus raphanistrum subsp. landra
FD539583       <-- AAATAGTTCAGAAGACAAAGATAGAGATTGTGTTGGGGAAATCAGATAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974594       <-- AAATAGTTCAGAAGACAAAGATTGAGATTGTGTTGGGGAAATCAGATAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976536       <-- AAATAGTTCAGAAGACAAAGATTGAGATTGTGTTGGGGAAATCAGATAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538880       <-- AAATAGTTCAGAAGACAAAGATTGAGATTGTGTTGGGGAAATCAGATAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD940832       --> AAATAGTTCAGAAGACAAAGATTGAGATTGTGTTGGGGAAATCAGATAAA  Raphanus sativus var. oleiformis
FD978322       --> AAATAGTTCAGAAGACAAAGATTGAGATTGTGTTGGGGAAATCAGATAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX906034       --> AAATAGTTCAGAAGACAAAGATTGAGATTGTGTTGGGGAAATCAGATAAA  Raphanus sativus cv Rat-Tail Radish #3870
EY947975       --> AAATAGTTCAGAAGACAAAGATTGAGATTGTGTTGGGGAAATCAGATAAA  Raphanus sativus cv Rat-Tail Radish #3870
FD578768       --> AAATAGTTCAGAAGACAAAGATTGAGATTGTGTTGGGGAAATCAGATAAA  Raphanus sativus cv Rat-Tail Radish #3870
EV569285       --> AAATAGTTCAGAAGACAAAGATAGAGATTGTGTTGGGGAAATCAGATAAA  Raphanus raphanistrum subsp. landra
FD542942       --> AAATAGTTCAGAAGACAAAGATTGAGATTGTGTTGGGGAAATCAGATAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543832       --> AAATAGTTCAGAAGACAAAGATAGAGATTGTGTTGGGGAAATCAGATAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971274       --> AAATAGTTCAGAAGACAAAGATAGAGATTGTGTTGGGGAAATCAGATAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980675       --> AAATAGTTCAGAAGACAAAGATTGAGATTGTGTTGGGGAAATCAGATAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748479       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN22082        --> TTTGATTCTCTGATGACTCCAGCGGCGGAGGAGGAGGCGGTGGCGAATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936620       <-- TTTGATTTTCTGATGACTCCAGCGGCGGAGGAGGAGGCGGTGGCGAATAT  Raphanus sativus var. oleiformis
FD582877       <-- TTTGATTTTTTGATGACTCCAGCGGCGGAAGAGGAGGCGGTCGCGAATAT  Raphanus sativus cv Rat-Tail Radish #3870
EV573862       <-- TTTGATTCTCTGATGACTCCAGCGTCGGAGGAGGAGGCGGTGGCGAATAT  Raphanus raphanistrum subsp. landra
FD539583       <-- TTTGATTTTTTGATGACTCCAGCGCCGGAGGAGGAGGCGGTGGCGAATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974594       <-- TTTGATTCTCTGATGACTCCAGCGGCGGAAGAGGAGGCGGTCGCGAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976536       <-- TTTGATTCTCTGATGACTCCAGCGGCGGAAGAGGAGGCGGTCGCGAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538880       <-- TTTGATTTTTTGATGACTCCAGCGGGGGAGGAGGAGGCGGTGGGGAATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD940832       --> TTTGATTCTCTGATGACTCCAGCGGCGGAGGAGGAGGCGGTGGCGAATAT  Raphanus sativus var. oleiformis
FD978322       --> TTTGATTCTCTGATGACTCCAGCGGCGGAAGAGGAGGCGGTCGCGAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX906034       --> TTTGATTCTCTGATGACTCCAGCGGCGGAGGAGGAGGCGGTGGCGAATAT  Raphanus sativus cv Rat-Tail Radish #3870
EY947975       --> TTTGATTCTCTGATGACTCCAGCGGCGGAGGAGGAGGCGGTGGCGAATAT  Raphanus sativus cv Rat-Tail Radish #3870
FD578768       --> TTTGATTCTCTGATGACTCCAGCGGCGGAAGAGGAGGCGGTCGCGAATAT  Raphanus sativus cv Rat-Tail Radish #3870
EV569285       --> TTTGATTCTCTGATGACTCCAGCGTCGGAGGAGGAGGCGGTGGCGAATAT  Raphanus raphanistrum subsp. landra
FD542942       --> TTTGATTCTCTGATGACTCCAGCGGCGGAGGAGGAGGCGGTGGCGAATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543832       --> TTTGATTCTCTGATGACTCCAGCGCCGGAGGAGGAGGCGGTGGCGAATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971274       --> TTTGGTTCTCTGATGACTCCAGCGCCGGAGGAGGAGGCGGTGGCGAATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980675       --> TTTGATTCTCTGATGACTCCAGCGGCGGAAGAGGAGGCGGTCGCGAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748479       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN22082        --> GGGGGAGAAACCAGTAGAAGCTGAAGCTCGTGAAGGCAAGAATGAGTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936620       <-- GGGGGAGAAACCAGTAGAAGCTGAAGCTCGTGAAGGCAAGAATGAGTGAC
FD582877       <-- GGGGGAGAAACCAGTAGAAGCTGAAGCTCGTGAAGGCAAGAATGAGTGAC
EV573862       <-- GGGGGAGAAACCAGTAGAAGCTGAAGCTCGTGAAGGCAAGAATGAGTGAC
FD539583       <-- GGGGGAGAAACCAGTAGAAGCTGAAGCTCGTGAAGGCAAGAATGAGTGAC
FD974594       <-- GGGGGAGAAACCAGTAGAAGCTGAAGCTCGTGAAGGCAAGAATGAGTGAC
FD976536       <-- GGGGGATAAACCAGTAGAAGCTGAAGCTCGTGAAGGCAAGAATGAGTGAC
FD538880       <-- GGGGGAGAAACCAGTAGAAGCTGAAGCTCGTGAAGGCAAGAATGAGTGAC
FD940832       --> GGGGGAGAAACCAGTAGAAGCTGAAGCTCGTGAAGGCAAGAATGAGTGAC
FD978322       --> GGGGGAGAAACCAGTAGAAGCTGAAGCTCGTGAAGGCAAGAATGAGTGAC
EX906034       --> GGGGGAGAAACCAGTAGAAGCTGAAGCTCGTGAAGGCAAGAATGAGTGAC
EY947975       --> GGGGGAGAAACCAGTAGAAGCTGAAGCTCGTGAAGGCAAGAATGAGTGAC
FD578768       --> GGGGGAGAAACCAGTAGAAGCTGAAGCTCGTGAAGGCAAGAATGAGTGAC
EV569285       --> GGGGGAGAAACCAGTAGAAGCTGAAGCTCGTGAAGGCAAGAATGAGTGAC
FD542942       --> GGGGGAGAAACCAGTAGAAGCTGAAGCTCGTGAAGGCAAGAATGAGTGAC
FD543832       --> GGGGGAGAAACCAGTAGAAGCTGAAGCTCGTGAAGGCAAGAATGAGTGAC
FD971274       --> GGGGGAGAAACCAGTAGAAGCTGAAGCTCGTGAAGGCAAGAATGAGTGAC
FD980675       --> GGGGGATAAACCAGTAGAAGCTGAAGCTCGTGAAGGCAAGAATGAGTGAC
EX748479       --> .........................................ATGAGTGAC

               551    -    601
UN22082        --> CAACTAAACATATTTCGAGGATTAGTATCATTTTCTTTATAACTATAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936620       <-- CAACTAAACATATTTCGAGGATTAGTATCATTTTCTTTATAGCTATAACA
FD582877       <-- CAACTAAACATATTTCGAGGATTAGTATCATTTTCTTTATAACTATAACA
EV573862       <-- CAACTAAACATATTTCGAGGATTAGTATCATTTTCTTTATAACTATAACA
FD539583       <-- CAACTAAACATATTTCGAGGATTAGTATCATTTTCTTTATAACTATAACA
FD974594       <-- CAACTAAACATATTTCGAGGATTAGTATCATTTTCTTTATAACTATAACA
FD976536       <-- CAACTAAACATATTTCGAGGATTAGTATCATTTTCTTTATAACTATAACA
FD538880       <-- CAACTAAACATATTTCGAGGATTAGTATCATTTTCTTTATAACTATAACA
FD940832       --> CAACTAAACATATTTCGAGGATTAGTATCATTTTCTTTATAGCTATAACA
FD978322       --> CAACTAAACATATTTCGAGGATTAGTATCATTTTCTTTATAACTATAACA
EX906034       --> CAACTAAACATATTTCGAGGATTAGTATCATTTTCTTTATAACTATAACA
EY947975       --> CAACTAAACATATTTCGAGGATTAGTATCATTTTCTTTATAACTATAACA
FD578768       --> CAACTAAACATATTTCGAGGATTAGTATCATTTTCTTTATAACTATAACA
EV569285       --> CAACTAAACATATTTCGAGGATTAGTATCATTTTCTTTATAACTATAACA
FD542942       --> CAACTAAACATATTTCGAGGATTAGTATCATTTTCTTTATAACTATAACA
FD543832       --> CAACTAAACATATTTCGAGGATTAGTATCATTTTCTTTATAACTATAACA
FD971274       --> CAACTAA-CATATTTCGAGGATTAGTATCATTTTCTTTATAACTATAACA
FD980675       --> CAACTAAACATATTTCGAGGATTAGTATCATTTTCTTTATAACTATAACA
EX748479       --> CAACTAAACATATTTCGAGGATTAGTATCATTTTCTTTATAACTATAACA

               601    -    651
UN22082        --> AGCAAACTGTTT-GTGCGACGACACATAACAAAGAATGCTTTATTATTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936620       <-- AGCAAACTGTTT-GTGCGACGACACATAACAAAGAATGCTTTATTATTAA  Raphanus sativus var. oleiformis
FD582877       <-- AGCAAACTGTTTTGTGGGACGACACATAACAAAGAATGCTTTATTATTAA  Raphanus sativus cv Rat-Tail Radish #3870
EV573862       <-- AGCAAACTGTTT-GTGCGACGACACATAACAAAGAATGCTCTATTATTAA  Raphanus raphanistrum subsp. landra
FD539583       <-- AGCAAACTGTTT-GTGCGACGACACATAACAAAGAATGCTTTATTATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974594       <-- AGCAAACTGTTTTGTGCGACGACACATAACAAAGAATGCTTTATTATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976536       <-- AGCAAACTGTTTTGTGCGACGACACATAACAAAGAATGCTTTATTATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538880       <-- AGCAAACTGTTT-GTGCGACGACACATAACAAAGAATGCTTTATTATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD940832       --> AGCAAACTGTTT-GTGCGACGACACATAACAAAGAATGCTTTATTATTAA  Raphanus sativus var. oleiformis
FD978322       --> AGCAAACTGTTTTGTGCGACGACACATAACAAAGAATGCTTTATTATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX906034       --> AGCAAACTGTTT-GTGCGACGACACATAACAAAGAATGCTTTATTATTAA  Raphanus sativus cv Rat-Tail Radish #3870
EY947975       --> AGCAAACTGTTT-GTGCGACGACACATAACAAAGAATGCTTTATTATTAA  Raphanus sativus cv Rat-Tail Radish #3870
FD578768       --> AGCAAACTGTTTTGTGCGACGACACATAACAAAGAATGCTTTATTATTAA  Raphanus sativus cv Rat-Tail Radish #3870
EV569285       --> AGCAAACTGTTT-GTGCGACGACACATAACAAAGAATGCTCTATTATTAA  Raphanus raphanistrum subsp. landra
FD542942       --> AGCAAACTGTTT-GTGCGACGACACATAACAAAGAATGCTTTATTATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543832       --> AGCAAACTGTTT-GTGCGACGACACATAACAAAGAATGCTCTATTATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971274       --> AGCAAACTGTTT-GTGCGACGACACATAACAAAGAATGCTCTATTATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980675       --> AGCAAACTGTTTTGTGCGACGACACATAACAAAGAATGCTTTATTAT-AA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748479       --> AGCAAACTGTTT-GTGCGACGACACATAACAAAGAATGCTTTA.......  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN22082        --> CTCAAAAGTTATATTTTATGGAAAGACAATGAAATGTTTTTTT--CGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936620       <-- CTCAAAAGTTATATTTTATGGAAAGACAATGAAATGTTTTTTTTTCGTTT  Raphanus sativus var. oleiformis
FD582877       <-- CTCAAAAGTTATATTTTATGGAAAGACAATGAAATGTTTTTTT--CGTTT  Raphanus sativus cv Rat-Tail Radish #3870
EV573862       <-- CTCAAAAGTGATATTTTATGGAAATACAATGAAATGTTTCTTT---TTTT  Raphanus raphanistrum subsp. landra
FD539583       <-- CTCAAAAGTGATATTTTATGGAAAGACAATGAAATGTTTTTT---CTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974594       <-- CTCAAAAGTTATATTTTATGGAAGGACAATGAAATGTTTTTTT--CGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976536       <-- CTCAAAAGTTATATTTTATGGAAAGACAATGAAATGTTTTTTT--CGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538880       <-- CCCAAAAGTTATATTTT.................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD940832       --> CTCAAAAGTTATATTTTATGGAAAGACAATGAAATGT.............  Raphanus sativus var. oleiformis
FD978322       --> CTCAAAAGTTATATTTTATGGAAAGACAATGAAATGTTTTTTT--CGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX906034       --> CTCAAAAGTTATATTTTATGGAAAGACAATGAAATGTTTTTTT--CGTTT  Raphanus sativus cv Rat-Tail Radish #3870
EY947975       --> CTCAAAAGTTATATTTTATGGAAAGACAATGAAATGTTTTTTT--CGTTT  Raphanus sativus cv Rat-Tail Radish #3870
FD578768       --> CTCAAAAGTTATATTTTATGGAAAGACAATGAAATGTTTTTTT--CGTTT  Raphanus sativus cv Rat-Tail Radish #3870
EV569285       --> CTCAAAAGTGATATTTTATGGAAATACAATGAAATGTTTCTTT---TTTT  Raphanus raphanistrum subsp. landra
FD542942       --> CCCAAAAGTTATATTTT.................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543832       --> CTCAAAAGTGATATTTTATGGAAAGAC.......................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971274       --> CTCAAAAGTGATATTTTATGGAAAGACAATGAAATGTTT-CTT--CTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980675       --> CTCAAAAGTatat.....................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748479       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN22082        --> TGGAGAAGGACAATGAAATGTTATGTTGATCATATTTCGTATACTTATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936620       <-- TGGAGAAGGACAATGAAATGTTATGTTGAgc...................
FD582877       <-- TGGAGAAGGACAATGAAATGTTATGTTGATCATATTTCGT..........
EV573862       <-- TGGAGAAGGACAATGAAATGTTATGTTGATCATATTTCGTATg.......
FD539583       <-- TGGAGAAGGACAATG...................................
FD974594       <-- TGGAGAAGGACAATGAAATGTTATGTcg......................
FD976536       <-- TGGAGAAGGACAATGAAATGTTATGTTGATCATATTTCGTATACTTATTT
FD538880       <-- ..................................................
FD940832       --> ..................................................
FD978322       --> TGGAGAAG-ACAATGAAATGTTATGTcg......................
EX906034       --> TGGAGAAG-ATAATGAAATGTTATGTTGAT....................
EY947975       --> TGGAGAAG-ATAATGAAATGTTATGTTGATC...................
FD578768       --> TGGAGAAG-ACAATGAAATGTTATGTTGATCATATTTCGT..........
EV569285       --> TGGAGAAAGACAATGAAATGTTATGTTGATCATATTTCGTATg.......
FD542942       --> ..................................................
FD543832       --> ..................................................
FD971274       --> TGGAGAA...........................................
FD980675       --> ..................................................
EX748479       --> ..................................................

               751    -    801
UN22082        --> GCCACGTGAATTTGGCCTG
                   ~~~~~~~~~~~~~~~~~~~
FD936620       <-- ...................
FD582877       <-- ...................
EV573862       <-- ...................
FD539583       <-- ...................
FD974594       <-- ...................
FD976536       <-- GCCACGTGAATTTGGCCTG
FD538880       <-- ...................
FD940832       --> ...................
FD978322       --> ...................
EX906034       --> ...................
EY947975       --> ...................
FD578768       --> ...................
EV569285       --> ...................
FD542942       --> ...................
FD543832       --> ...................
FD971274       --> ...................
FD980675       --> ...................
EX748479       --> ...................