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Alignment for radish unigene UN22143

               1      -     51
UN22143        --> GTGAAACATAAATATAAGTCTTGAAAATTAAAACTGAACACACATCAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- GTGAAACATAAATATAAGTCTTGAAAATTAAAACTGAACACACATCAGAG
FD940482       <-- ...............ggGTCTTGAAAATTAAAACTGAACACACATCAGAG
EV550353       <-- ..................................................
FD978832       <-- ..................................................
EV530906       --> ..GAAACATAAATATAAGTCTTGAAAATTAAAACTGAACACACATCAGAG
EV532660       --> ..GAAACATAAATATAAGTCTTGAAAATTAAAACTGAACACACATCAGAG
EX891563       --> .cGAAACATAAATATAAGTCTTGAAAATTAAAACTGAACACACATCAGAG
FD531268       --> ..GAAACATAAATATAAGTCTTGAAAATTAAAACTGAACACACATCAGAG
EV545147       --> .................GTCTTGAAAATTAAAACTGAACACACATCAGAG
FD936354       --> ...............ggGTCTTGAAAATTAAAACTGAACACACATCAGAG
EV545666       --> ..................................................

               51     -    101
UN22143        --> CAAGTGTATTTGTTCTAAACAAGCACAAAAGAGATTCCGAAGTCTTA-CA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- CAAGGGTATTTGTTCTAAACAAGCACAAAAGAGATTCCAAAGTCTTA-CA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940482       <-- CAAGTGTATTTGTTCTTAACAAACACAAAAGAGATTCCGAAGTCTTA-CA  Raphanus sativus var. oleiformis
EV550353       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978832       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530906       --> CAAGTGTATTTGTTCTAAACAAGCACAAAAGAGATTCCGAAGTCTTAACA  Raphanus raphanistrum subsp. maritimus
EV532660       --> CAAGTGTATTTGTTCTAAACAAGCACAAAAGAGATTCCGAAGTCTTAACA  Raphanus raphanistrum subsp. maritimus
EX891563       --> CAAGTGTATTTGTTCTAAACAAGCACAAAAGAGATTCCGAAGTCTTAACA  Raphanus sativus var. oleiformis
FD531268       --> CAAGTGTATTTGTTCTAAACAAGCACAAAAGAGATTCCGAAGTCTTAACA  Raphanus raphanistrum subsp. maritimus
EV545147       --> CAAGTGTAGTTGTTCTAAACAAGCACAAAAGAGATTCCGAAGTCTTA-CA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD936354       --> CAAGTGTATTTGTTCTTAACAAACACAAAAGAGATTCCGAAGTCTTA-CA  Raphanus sativus var. oleiformis
EV545666       --> ....gGTATTTGTTCTAAACAAGCACAAAAGAGATTCCAAAGTCTTA-CA  Raphanus raphanistrum subsp. raphanistrum (NY)

               101    -    151
UN22143        --> AACACAGATTAGTAAAAGACTAGATGATAAAGAGTTTTCAAACACACATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- AACACAAATTAGTAAAAGACTAGATGATAAAGAGTTTTCAAACACACATC
FD940482       <-- AACACAGATTAGTAAAAGACTAGATGATAA-GAGTTTTCAAACACACATC
EV550353       <-- ..................................................
FD978832       <-- ..................................................
EV530906       --> AACACAGATTAGTAAAAGACTAGATGATAAAGAGTTTTCAAACACACATC
EV532660       --> AACACAGATTAGTAAAAGACTAGATGATAAAGAGTTTTCAAACACACATC
EX891563       --> AACACAGATTAGTAAAAGACTAGATGA-CAAGAGTTTTCAAACACACATC
FD531268       --> AACACAGATTAGTAAAAGACTAGATGATAAAGAGTTTTCAAACACACATC
EV545147       --> AACACAGATTAGTAAAAGACTAGATGATAA-GAGTTTTCAAACACACATC
FD936354       --> AACACAGATTAGTAAAAGACTAGATGATAA-GAGTTTTCAAACACACATC
EV545666       --> AACACAAATTAGCAAAAGACTAGATGATAAAGAGTTTTCAAACACACATC

               151    -    201
UN22143        --> AGTTTAAGAAGACTGAAACATTGGAGGAACTGTGCATAATGTTTTGTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- AGTTTAAGAAGACTGAAACATTGGAGGAACTGTGCATAATGTTTTGTTTT
FD940482       <-- AGTTTAAGAAGACTGAAACATTGGAGGAACTGTGCATAATGTTTTGTTTT
EV550353       <-- ..................................................
FD978832       <-- ..................................................
EV530906       --> AGTTTAAGAAGACTGAAACATTGGAGGAACTGTGCATAATGTTTTGTTTT
EV532660       --> AGTTTAAGAAGACTGAAACATTGGAGGAACTGTGCATAATGTTTTGTTTT
EX891563       --> AGTTTAAGAAGACTGAAACATTGGAGGAACTGTGCATAATGTTTTGTTTT
FD531268       --> AGTTTAAGAAGACTGAAACATTGGAGGAACTGTGCATAATGTTTTGTTTT
EV545147       --> AGTTTAAGAAGACTGAAACATTGGAGGAACTGTGCATAATGTTTTGTTTT
FD936354       --> AGTTTAAGAAGACTGAAACATTGGAGGAACTGTGCATAATGTTTTGTTTT
EV545666       --> AGTTTAAGAAGACTGAAACATTGGAGGAACTGTGCATAATGTTTTGTTTT

               201    -    251
UN22143        --> GAGCCTCTCAATCTTTGTTCTTCGATTTCTCCACTGCACTTGGAGCTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- GAGCCTCTCAATCTTTGTTCTTAGATTTCTCCATTGCACTTGGAGCTAAT
FD940482       <-- GAGCCT--CAATCTTTGTTCTTCGATTTCTCCACTGCACTTGGAGCTAAA
EV550353       <-- ..................................................
FD978832       <-- ..................................................
EV530906       --> GAGCCTCTCAATCTTTGTTCTTCGATTTCTCCACTGCACTTGGAGCTAAA
EV532660       --> GAGCCTCTCAATCTTTGTTCTTCGATTTCTCCACTGCACTTGGAGCTAAA
EX891563       --> GAGCCTCTCAATCTTTGTTCTTCGATTTCTCCACTGCACTTGGAGTTAAA
FD531268       --> GAGCCTCTCAATCTTTGTTCTTCGATTTCTCCACTGCACTTGGAGCTAAA
EV545147       --> GAGCCTCTCAATCTTTGTTCTTCGATTTCTCCACTGCACTTGGAGCTAAA
FD936354       --> GAGCCTC--AATCTTTGTTCTTCGATTTCTCCACTGCACTTGGAGCTAAA
EV545666       --> GAGCCTCTCAATCTTTGTTCTTAGATTTCTCCATTGCACTTGGAGCTAAT

               251    -    301
UN22143        --> CCAATAGAATCAGAGCCCTTCATGATCTTCAGTTTCCTACACGTTTCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- CCAATAGAATCAGAGCCCTTCATGATCTTCAGTTTCCTACACGTTTCAGT
FD940482       <-- CCAATAGAATCAGAGCCCCTCATGATCTTCAATTTCCTACACGTTTCAc.
EV550353       <-- ........................................ACGTTTCAGT
FD978832       <-- ..................................................
EV530906       --> CCAATAGAGTCAGAGCCCTTCATGATCTTCAGTTTCCTACATGTTTCAGT
EV532660       --> CCAATAGAGTCAGAGCCCTTCATGATCTTCAGTTTCCTACATGTTTCAGT
EX891563       --> CCAATAGAATCAGAGCCCTTCATGATCTTCAATTTCCTACACGTTTCAGT
FD531268       --> CCAATAGAGTCAGAGCCCTTCATGATCTTCAGTTTCCTACATGTTTCAGT
EV545147       --> CCAATAGAATCAGAGCCCTTCATGATCTTCAGTTTCCTACAAGTTTCAGT
FD936354       --> CCAATAGAATCAGAGCCCCTCATGATCTTCAATTTCCTACACGTTTCAc.
EV545666       --> CCAATAGAATCAGAGCCCTTCATGATCT-CAGTTTCCTACACGTTTCAGT

               301    -    351
UN22143        --> AAATATCTCCCAAGGGACATCTCCAACAAGCATCCAGTCACCATCTTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- AAATATCTCCCAAGGGACAc..............................
FD940482       <-- ..................................................
EV550353       <-- AAATATCTCCCAAGGGACATCTCCAACAAGCATCCAGTCACCATCTTTGT
FD978832       <-- ..................................................
EV530906       --> AAATATCTCCCAAGGGACATCTCCAACAAGCATCCAGTCACCATCTTTGT
EV532660       --> AAATATCTCCCAAGGGACATCTCCAACAAGCATCCAGTCACCATCTTTGT
EX891563       --> AAATATCTCCCAAGGGACATCTCCAACAAGCATCCAGTCACCATCTTTGT
FD531268       --> AAATATCTCCCAAGGGACATCTCCAACAAGCATCCAGTCACCATCTTTGT
EV545147       --> AAATATCTCCCAAGGGACATCTCCAACAAGCATCCAGTCACCATCTTTGT
FD936354       --> ..................................................
EV545666       --> AAATATCTCCCAAGGGACATCTCCAACAAGCATCCAGTCACCATCTTTGT

               351    -    401
UN22143        --> CTTCATAAGTAAGCACAAACTCTGATCCGTGAAGAAGATCCTTCAACTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- ..................................................
FD940482       <-- ..................................................
EV550353       <-- CTTCATAAGTAAGCACAAACTCTGATCCGTGAAGAAGATCCTTCAACTTC
FD978832       <-- ..................................................
EV530906       --> CTTCATAAGTAAGCACAAACTCTGATCCGTGAAGAAGATCCTTCAACTTC
EV532660       --> CTTCATAAGTAAGCACAAACTCTGATCCGTGAAGAAGATCCTTCAACTTC
EX891563       --> CTTCATAAGTAAGCACAAACTCTGATCTGTGAAGAAGATCCTTCAACTTC
FD531268       --> CTTCATAAGTAAGCACAAACTCTGATCCGTGAAGAAGATCCTTCAACTTC
EV545147       --> CTTCATAAGTAAGCACAAACTCTGATCCGTGAAGAAGATCCTTTAACTTC
FD936354       --> ..................................................
EV545666       --> CTTCATAAGTAAGCACAAACTCTGATCCGTGAAGAAGATCCTTCAACTTC

               401    -    451
UN22143        --> ACCTCACTCATTCTTTCCTTCCCATGAGCTCCATGAAGTCCACATTGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940482       <-- ..................................................  Raphanus sativus var. oleiformis
EV550353       <-- ACCTCACTCATTCTTTCCTTCCCATGAGCTCCATGAAGTCCACATTGACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978832       <-- ..............................................GACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530906       --> ACCTCACTCATTCTTTCCTTCCCATGAGCTCCATGAAGTCCACATTGACC  Raphanus raphanistrum subsp. maritimus
EV532660       --> ACCTCACTCATTCTTTCCTTCCCATGAGCTCCATGAAGTCCACATTGACC  Raphanus raphanistrum subsp. maritimus
EX891563       --> ACCTCACTCATTCTTTCCTTCCCATGAGCTCCATGAAGTCCACATTGACC  Raphanus sativus var. oleiformis
FD531268       --> ACCTCACTCATTCTTTCCTTCCCATGAGCTCCATGAAGTCCACATTGACC  Raphanus raphanistrum subsp. maritimus
EV545147       --> ACCTCACTCATTATTTCCTTCCCATGAGCTCCATGAAGTCCACATTGACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD936354       --> ..................................................  Raphanus sativus var. oleiformis
EV545666       --> ACCTCACTCATTCTTTCCTTCCCATGAGCTCCATGAAGTCCACATTGACC  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN22143        --> AAGAGTGAAGCAGCTGAACATCTTCTCAAGTGCAGAAGACAAGTGTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940482       <-- ..................................................  Raphanus sativus var. oleiformis
EV550353       <-- AAGGGTGAAGCAGCTGAACATCTTCTCAAGTGCAGAAGACAAATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978832       <-- AAGGGTGAAGCAGCTGAACATCTTCTCAAGTGCAGAAGACAAATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530906       --> GAGAGTGAAGCAGCTGAACATCTTCTCAAGTGCAGAAGACAAGTGTTGAT  Raphanus raphanistrum subsp. maritimus
EV532660       --> GAGAGTGAAGCAGCTGAACATCTTCTCAAGTGCAGAAGACAAGTGTTGAT  Raphanus raphanistrum subsp. maritimus
EX891563       --> AAGAGTGAAGCAGCTGAACATCTTCTCAAGTGCAGAAGACAAGTGTTGAT  Raphanus sativus var. oleiformis
FD531268       --> GAGAGTGAAGCAGCTGAACATCTTCTCAAGTGCAGAAGACAAGTGTTGAT  Raphanus raphanistrum subsp. maritimus
EV545147       --> AAGAGTGAAGCAGCTGAACATCTTCTCAAGTGCAGAAGACAAGTGTTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD936354       --> ..................................................  Raphanus sativus var. oleiformis
EV545666       --> AAGGGTGAAGCAGCTGAACATCTTCTCAAGTGCAGAAGACAAATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN22143        --> AGCATGTGTAGGTTCCCAAATCAACTTTCCTCAGATAGGGAGCACCATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- ..................................................
FD940482       <-- ..................................................
EV550353       <-- AGCAAGTGTAGGTTCCCAAATCAACTTTCCTCAGATAGGGAGCACCATCC
FD978832       <-- AGCAAGTGTAGGTTCCCAAATCAACTTTCCTCAGATAGGGAACACCATCC
EV530906       --> AGCATGTGTAGGTTCCCAAATCAACTTTCCTCAGATAGGGAGCACCATCC
EV532660       --> AGCATGTGTAGGTTCCCAAATCAACTTTCCTCAGATAGGGAGCACCATCC
EX891563       --> AGCAAGTGTAGGTTCCCAAATCAACTTTCCTCAGATAGGGAGCACCATCC
FD531268       --> AGCATGTGTAGGTTCCCAAATCAACTTTCCTCAGATAGGGAGCACCATCC
EV545147       --> AGCATGTGTAGGTTCCCAAATCAACTTTCCTCAGATAGGGAGCACCATCC
FD936354       --> ..................................................
EV545666       --> AGCAAGTGTAGGTTCCCAAATCAACTTTCCTCAGATAGGGAGCACCATCC

               551    -    601
UN22143        --> ATGCTCACCTTCACAAACAGAGCGCCAAGACCAGGTTTCCCATCAACCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- ..................................................
FD940482       <-- ..................................................
EV550353       <-- ATGCTCACCTTCACAAACAGAGCGCCAAGACCAGGTTTCCCATCAACCTC
FD978832       <-- ATGCTCACCTTCACAAACAGAGCGCCAAGACCAGGTTTCCCATCAACCTC
EV530906       --> ATGCTCACCTTCACAAACAGAGCGCCAAGACCAGGTTTCCCATCAACCTC
EV532660       --> ATGCTCACCTTCACAAACAGAGCGCCAAGACCAGGTTTCCCATCAACCTC
EX891563       --> ATGCTCACCTTCACAAACAGAGCGCCGAGACCAGGTTTCCCATCAACCTC
FD531268       --> ATGCTCACCTTCACAAACAGAGCGCCAAGACCAGGTTTCCCATCAACCTC
EV545147       --> ATGCTCACCTTCACAAACAGAGCGCCAAGACCAGGTTTCCCATCAACCTC
FD936354       --> ..................................................
EV545666       --> ATGCTCACCTTCACAAACAGAGCGCCAAGACCAGGTTTCCCATCAACCTC

               601    -    651
UN22143        --> ATTAGTGTTCTTTGAAGTAGAAGAAGCCATTGTGTTCTTCCTGTAGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- ..................................................
FD940482       <-- ..................................................
EV550353       <-- ATTAGTGTTCTTTGAAGTAGAAGAAGCCATAGTGTTCTTCCTGTAGGATC
FD978832       <-- ATTAGTGTTCTTTGAAGTAGAAGAAGCCATAGTGTTCTTCCTGTAGGATC
EV530906       --> ATTAGTGTTCTTTGAAGTAGAAGAGGCCATTGTGTTCTTCCTGTAGGATC
EV532660       --> ATTAGTGTTCTTTGAAGTAGAAGAAGCCATTGTGTTCTTCCTGTAGGATC
EX891563       --> ATTAGTGTTCTTGGAAGTAGAAGAAGCCATTGTGTTCTTCCTGAAGGATC
FD531268       --> ATTAGTGTTCTTTGAAGTAGAAGAAGCCATTGTGTTCTTCCTGTAGGATC
EV545147       --> ATTAGTGTTCTTGGATGTAGAAGAAGCCATTGTGTTCTTCCTGTAGGATC
FD936354       --> ..................................................
EV545666       --> ATTAGTGTTCTTTGAAGTAGAAGAAGCCATAGTGTTCTTCCTGTAGGATC

               651    -    701
UN22143        --> TGATTGGAGGCCAACCAACAACCTGTGCCTTGGCAGCAGGTGCATTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- ..................................................
FD940482       <-- ..................................................
EV550353       <-- TGATTGGAGGCCAACCAACAACCTGTGCCTTGGCAGCAGGTGCATTGTTG
FD978832       <-- TGATTGGAGGCCAACCAACAACCTGTGCCTTGGCAGCAGGTGCATTGTTG
EV530906       --> TGATTGGAGGCCAACCAACAACCTGTGCCTTGGCAGCAGGTGCATTGTTG
EV532660       --> TGATTGGAGGCCAACCAACAACCTGTGCCTTGGCAGCAGGTGCATTGTTG
EX891563       --> TGATTGGAGGCCAACCAACAACCTGTGCCTTGGCAGCAGGTGCATTGTTG
FD531268       --> TGATTGGAGGCCAACCAACAACCTGTGCCTTGGCAGCAGGTGCATTGTTG
EV545147       --> TGATTGGAGGCCAACCAACAACCTGTGCCTTGGCAGCAGGTGCATTGTTG
FD936354       --> ..................................................
EV545666       --> TGATTGGAGGCCAACCAACAACCTGTGCCTTGGCAGCAGGTGCATTGTTG

               701    -    751
UN22143        --> GAGCCACTCTTAGCAAGATATCCTCTTTTGTTGCCAGAAGCA-TGGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940482       <-- ..................................................  Raphanus sativus var. oleiformis
EV550353       <-- GAGTCACACTTAGCAAGATATCCTCTTTTGCTTCCCGAAGCA-TG--GTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978832       <-- GAGTCACACTTAGCAAGATATCCTCTTTTGTTTCCCGAAGCA-TG--GTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530906       --> GAGCCACTCTTAGCAAGATATCCTCTTTTGTTGCCAGAAGCAGCATGGTC  Raphanus raphanistrum subsp. maritimus
EV532660       --> GAGCCACTCTTAGCAAGATATCCTCTTTTGTTGCCAGAAGCAGCATGGTC  Raphanus raphanistrum subsp. maritimus
EX891563       --> GAGCCACTCTTAGCAAGATATCCTCTTTTGTTGCCTGAAGCggaatggtc  Raphanus sativus var. oleiformis
FD531268       --> GAGCCACTCTTAGCAAGATATCCTCTTTTGTCGCCAGAAGCAgcatggtc  Raphanus raphanistrum subsp. maritimus
EV545147       --> GAGCCACACTTAGCAAGATATTCTCTTTTGTTGCCAGAAGCAGAATGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD936354       --> ..................................................  Raphanus sativus var. oleiformis
EV545666       --> GAGTCACACTTAGCAAGATATCCTCTTTTGCTTCCCGAAGCA-TGGtctt  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN22143        --> TTTGCAAGGGAGCAGCGGGAAGAGAAGTTTCTCATCAGGAGTTCTTGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- ..................................................
FD940482       <-- ..................................................
EV550353       <-- TTTGCAAGGGAGCAGCGGGAAGAGAAGTTTCTCATCAGGAGTTCTTGGAC
FD978832       <-- TTTGCAAGGGGGCAGCGGGAAGAGAAGTTTCTCATCAGGAGTTCTTGGAC
EV530906       --> TTTGCAAGGGAGCAGCGGGAAGAGAAGTTTCTCATCAGGAGTTCTTGGAC
EV532660       --> TTTGCAAGGGAGCAGCGGGAAGAGAAGTTTCTCA................
EX891563       --> tttg..............................................
FD531268       --> ttt...............................................
EV545147       --> TTTGCAAGGGAGCAGCGGGAAGAGAAGTTTCTCA................
FD936354       --> ..................................................
EV545666       --> tg................................................

               801    -    851
UN22143        --> TCAGCAAACCGAAATCAGTTTCTCTCTGAGGAGATTGAGAGTCAGGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- ..................................................
FD940482       <-- ..................................................
EV550353       <-- TCAGCAAACCGAAATCAGTTTCTCTCTGAGGAGATTGAGAGTCAGGAAGA
FD978832       <-- TCAGCAAACCGAAATCAGTTTCTCTCTGAGGAGATTGAGAGTCAGGAAGA
EV530906       --> TCAGCAAACCGAAATCAGTTTCTCTCTGAGGAGACTGAGAG.........
EV532660       --> ..................................................
EX891563       --> ..................................................
FD531268       --> ..................................................
EV545147       --> ..................................................
FD936354       --> ..................................................
EV545666       --> ..................................................

               851    -    901
UN22143        --> CCTAGCCTTAGCTCTGTAGCTTTGAAGTTGAGGCTGCTGCTCTTCTTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- ..................................................
FD940482       <-- ..................................................
EV550353       <-- CCTAGCCTTAGCTCTGTAGCTTTGAAGTTGAGGCTGCTGCTCTTCTTGTC
FD978832       <-- CCTAGCCTTAGCTCTGTAGCTTTGAAGTTGAGGCTGCTGCTCTTCTTGTC
EV530906       --> ..................................................
EV532660       --> ..................................................
EX891563       --> ..................................................
FD531268       --> ..................................................
EV545147       --> ..................................................
FD936354       --> ..................................................
EV545666       --> ..................................................

               901    -    951
UN22143        --> AGCATTGGGAAGGGTTGAGCTGTCAACAGAGGAGCAATCAGACAAACCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- ..................................................
FD940482       <-- ..................................................
EV550353       <-- AGCATTGGGAAGGGTTGAGCTGTCAACAGAGGAGCAATCAGACAAACCAA
FD978832       <-- AGCATTGGGAAGGGTTGAGCTGTCAACAGAGGAGCAATCAGACAAACCAA
EV530906       --> ..................................................
EV532660       --> ..................................................
EX891563       --> ..................................................
FD531268       --> ..................................................
EV545147       --> ..................................................
FD936354       --> ..................................................
EV545666       --> ..................................................

               951    -   1001
UN22143        --> AGTAGTTGCGTTCCTTCAGACCAGGTGATGTACCCAAACCCTCCTTGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- ..................................................
FD940482       <-- ..................................................
EV550353       <-- AGTAGTTGCGTTCCTTCAGACC............................
FD978832       <-- AGTAGTTGCGTTCCTTCAGACCAGGTGATGTACCCAAACCCTCCTTGTCC
EV530906       --> ..................................................
EV532660       --> ..................................................
EX891563       --> ..................................................
FD531268       --> ..................................................
EV545147       --> ..................................................
FD936354       --> ..................................................
EV545666       --> ..................................................

               1001   -   1051
UN22143        --> ACACTTTCCAATCGATAAGACATGAGATCTCTTAGTTTTCACACTTTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- ..................................................
FD940482       <-- ..................................................
EV550353       <-- ..................................................
FD978832       <-- ACACTTTCCAATCGATAAGACATGAGATCTCTTAGTTTTCACACTTTTAT
EV530906       --> ..................................................
EV532660       --> ..................................................
EX891563       --> ..................................................
FD531268       --> ..................................................
EV545147       --> ..................................................
FD936354       --> ..................................................
EV545666       --> ..................................................

               1051   -   1101
UN22143        --> CTGGAGAGAGAAGACGAACACAGTAGAAGATCAAACTAACGAAGAGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- ..................................................
FD940482       <-- ..................................................
EV550353       <-- ..................................................
FD978832       <-- CTGGAGAGAGAAGACGAACACAGTAGAAGATCAAACTAACGAAGAGAGAG
EV530906       --> ..................................................
EV532660       --> ..................................................
EX891563       --> ..................................................
FD531268       --> ..................................................
EV545147       --> ..................................................
FD936354       --> ..................................................
EV545666       --> ..................................................

               1101   -   1151
UN22143        --> AAAGTGCACGAACGAAATCAGGAGAGAGAAGGGAAGCAGGGGTCAAGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550944       <-- ..................................................
FD940482       <-- ..................................................
EV550353       <-- ..................................................
FD978832       <-- AAAGTGCACGAACGAAATCAGGAGAGAGAAGGGAAGCAGGGGTCAAGGTC
EV530906       --> ..................................................
EV532660       --> ..................................................
EX891563       --> ..................................................
FD531268       --> ..................................................
EV545147       --> ..................................................
FD936354       --> ..................................................
EV545666       --> ..................................................

               1151   -   1201
UN22143        --> CATCCATGGAAAATGATAT
                   ~~~~~~~~~~~~~~~~~~~
FD550944       <-- ...................
FD940482       <-- ...................
EV550353       <-- ...................
FD978832       <-- CATCCATGGAAAATGATAT
EV530906       --> ...................
EV532660       --> ...................
EX891563       --> ...................
FD531268       --> ...................
EV545147       --> ...................
FD936354       --> ...................
EV545666       --> ...................