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Alignment for radish unigene UN22144

               1      -     51
UN22144        --> ATCAAAATGTAACAAACTTCATTTATATAACAATAAAAGTTTTGCATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- ..................................................
FD552085       <-- ..................................................
FD950151       <-- ..................................................
EY925612       <-- ..................................................
EY942209       --> ATCAAAATGTAACAAACTTCATTTATATAACAATAAAAGTTTTGCATCAA
FD547916       --> ATCAAAATGTAACAAACTTCATTTATATAACAATAAACGTTTTGCATCAA
EY921056       --> gTCAAAATGTAACAAACTTCATTTATATAACAATAAAAGTTTTGCATCAA
FD984654       --> ......ccGTAACAAACTTCATTTATATAACAATAAAAGTTTTGCATCAA
FD945689       --> ............................agCAATAAACGTTTTGCATCAA

               51     -    101
UN22144        --> TTTCTGTAAATCTGTCTCCCACTTATTGTCTGCTATGTTTCTAACAACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- ..................................................
FD552085       <-- ..................................................
FD950151       <-- ..................................................
EY925612       <-- ..................................................
EY942209       --> TTTCTGTAAATCTGTCTCCCACTTATTGTCTGCTATGTTTCTAACAACAG
FD547916       --> TTTCTGTAAATCTGTCTCCCACTTATTGTCTGCCATGTTTCTAACAACAG
EY921056       --> TTTCTGTAAATCTGTCTCCCACTTATTGTCTGCTATGTTTCTAACAACAG
FD984654       --> TTTCTGTAAATCTGTCTCCCACTTATTGTCTGCTATGTTTCTAACAACAG
FD945689       --> TTCCTGTAAATCTGTCTCCCACTTATTGTCTGCTATGTTTCTAACAACAG

               101    -    151
UN22144        --> AAAATGAGACACAAGAGATGGATGAGCTTTAAAGTCTCAAGGTAAGATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- ..................................................
FD552085       <-- ..................................................
FD950151       <-- ..................................................
EY925612       <-- ..................................................
EY942209       --> AAAATGAGACACAAGAGATGGATGAGCTTTAAAGTCTCAAGGTAAGATCA
FD547916       --> AAAATGACACACAAGAGATGGATGAGCTTTAGAGTCTCAAGGTAAGATCA
EY921056       --> AAAATGAGACACAAGAGATGGATGAGCTTTAAAGTCTCAAGGTAAGATCA
FD984654       --> AAAATGAGACACAAGAGATGGATGAGCTTTAAAGTCTCAAGGTAAGATCA
FD945689       --> AAAATGACACACAAGAGATGGATGAGCTTTAGAGTCTCAAGGTAAGATCA

               151    -    201
UN22144        --> GGCTTTGAGCTATTGTTATTTCCTACAACAGTTCCATTTACTGCAGCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- ..................................................
FD552085       <-- ..................................................
FD950151       <-- ..................................................
EY925612       <-- ..................................................
EY942209       --> GGCTTTGAGCTATTGTTATT-CCTACAACAGTTCCATTTACTGCAGCCGT
FD547916       --> GGCTTTGAGCTATTGTTATTTCCTACAACAGTTCCATTTACTGCAGCCGT
EY921056       --> GGCTTTGAGCTATTGTTATTTCCTACAACAGTTCCATTTACTGCAGCCGT
FD984654       --> GGCTTTGAGCTATTGTTATTTCCTACAACAGTTCCATTTACTGCAGCCGT
FD945689       --> GGCTTTGAGCTATTGTTATTTCCTACAACAGTTCCATTTACTGCAGCCGT

               201    -    251
UN22144        --> GTTCAGATCAAGACCAGACTCTTTAACAGCCACCACCGATGGAGCTTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- ..................................................
FD552085       <-- ..................................................
FD950151       <-- ..................................................
EY925612       <-- ..................................................
EY942209       --> GTTCAGATCAAGACCAGACTCTTTAACAGCCACCACCGATGGAGCTTCAG
FD547916       --> GTTCAGATCAAGACCAGACTCTTTAACAGCCACCACCACTGGAGCTTCAG
EY921056       --> GTTCAGATCAAGACCAGACTCTTTAACAGCCACCACCGATGGAGCTTCAG
FD984654       --> GTTCAGATCAAGACCAGACTCTTTAACAGCCACCACCGATGGAGCTTCAG
FD945689       --> GTTCAGATCAAGACCAGACTCTTTAACAGCCACCACCACTGGAGCTTCAG

               251    -    301
UN22144        --> CTTCCTCCACGACCTGACGAAAACTCCCGGGCCAGAATAAATCACTGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- ................................CAGAA-AAATCACTGCCA
FD552085       <-- .................................................A
FD950151       <-- ..................................................
EY925612       <-- ..................................................
EY942209       --> CTTCCTCCACGACCTGACGAAAACTCCCGGGCCAGAATAAATCACTGCCA
FD547916       --> CTTCCTCCACGACCTGACGAAAACTCCCGGGCCAGAATAAATCACTGCCA
EY921056       --> CTTCCTCCACGACCTGACGAAAACTCCCGGGCCAGAATAAATCACTGCCA
FD984654       --> CTTCCTCCACGACCTGACGAAAACTCCCGGGCCAGAATAAATCACTGCCA
FD945689       --> CTTCCTCCACGACCTGACGAAAACTCCCGGGCCAGAATAAATCACTGCCA

               301    -    351
UN22144        --> TCATCATAGTCAAAGAACACTGGCACAGTATTACCAAAGTACCCTTGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- TCATCATAGTCAAAGAACACTGGCACAGTAT-ACCAAAGTACCCTTGATG  Raphanus sativus cv Rat-Tail Radish #3870
FD552085       <-- TCGTCATAGTCAAA-AACACTGGCACAGTATTACCAAAGTACCCTTGATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD950151       <-- ...............AACACTGGCACAGTAT-ACCAAAGTACCCTTGATG  Raphanus sativus cv Early Scarlet Globe
EY925612       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY942209       --> TCATCATAGTCAAAGAACACTGGCACAGTATTACCAAAGTACCCTTGATG  Raphanus sativus cv Rat-Tail Radish #3870
FD547916       --> TCGTCATAGTCAAAAAACACTGGCACAGTATTACCAAAGTACCCTTGATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921056       --> TCATCATAGTCAAAGAACACTGGCACAGTATTACCAAAGTACCCTTGATG  Raphanus raphanistrum subsp. landra
FD984654       --> TCATCATAGTCAAAGAACACTGGCACAGTATTACCAAAGTACCCTTGATG  Raphanus raphanistrum subsp. landra
FD945689       --> TCGTCATAGTCAAAAAACACTGGCACAGTATTACCAAAGTACCCTTGATG  Raphanus sativus cv Early Scarlet Globe

               351    -    401
UN22144        --> ATGAAACCTTGCAAGATGAGGAGGAGGCTGAGGCTGGGATAAGGTGTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- ATGAAAC-TTGCAAGATGAGGAGGAGGCTGAGGCTGGGATAAGGTGTGGT
FD552085       <-- ATGAAAC-TTGCAAGATGAGGAGGAGGCTGAGGCTGGGATAAGGTGTGGT
FD950151       <-- ATGAAAC-TTGCAAGATGAGGAGGAGGCTGAGGCTGGGATAAGGTGTGGT
EY925612       <-- ...........CAAGATGAGGAGGAGGCTGAGGCTGGGATAAGGTGTGGT
EY942209       --> ATGAAACCTTGCAAGATGAGGAGGAGGCTGAGGCTGGGATAAGGTGTGGT
FD547916       --> ATGAAACCTTGCAAGATGAGGAGGAGGCTGAGGCTGGGATAAGGTGTGGT
EY921056       --> ATGAAACCTTGCAAGATGAGGAGGAGGCTGAGGCTGGGATAAGGTGTGGT
FD984654       --> ATGAAACCTTGCAAGATGAGGAGGAGGCTGAGGCTGGGATAAGGTGTGGT
FD945689       --> ATGAAACCTTGCAAGATGAGGAGGAGGCTGAGGCTGGGATAAGGTGTGGT

               401    -    451
UN22144        --> GAAGTAGACTAGAGTGAGCTTGCATCCCTAGAGAAGAAGAGGTGTATGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- GAAGTAGACTAGAGTGAGCTTGCATCCCTAGAGAAGAAGAGGTGTATGTG
FD552085       <-- GAAGTAGACTAGAGTGAGCTTGCATCCCTAGAGAAGAAGAGGTGTATGTG
FD950151       <-- GAAGTAGACTAGAGTGAGCTTGCATCCCTAGAGAAGAAGAGGTGTATGTG
EY925612       <-- GAAGTAGACTAGAGTGAGCTTGCATCCCTAGAGAAGAAGAGGTGTATGTG
EY942209       --> GAAGTAGACTAGAGTGAGCTTGCATCCCTAGAGAAGAAGAGGTGTATGTG
FD547916       --> GAAGTAGACTAGAGTGAGCTTGCATCCCTAGAGAAGAAGAGGTGTATGTG
EY921056       --> GAAGTAGACTAGA.....................................
FD984654       --> GAAGTAGACTAGAGTGAGCTTGCATCCCTAGAGAAGAAGAGGTGTATGTG
FD945689       --> GAAGTAGACTAGAGTGAGCTTGCATCCCTAGAGAAGAAGAGGTGTATGTG

               451    -    501
UN22144        --> TAAGGCCTGTGATGGTGACCAAACATTCTTCCCATGTGCATTGCTCGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- TAAGGCCTGTGATGGTGACCAAACATTCTTCCCATGTGCATTGCTCGTTT  Raphanus sativus cv Rat-Tail Radish #3870
FD552085       <-- TAAGGCCTGTGATGATGACCAAACATTCTTCCCATGTGCATTGCTCGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD950151       <-- TAAGGCCTGTGATGATGACCAAACATTCTTCCCATGCGCATTGCTCGTTT  Raphanus sativus cv Early Scarlet Globe
EY925612       <-- TAAGGCCTGTGATGGTGACCAAACATTCTTCCCATGTGCATTGCTCGTTT  Raphanus raphanistrum subsp. landra
EY942209       --> TAAGGCCTGTGATGGTGACCAAACATTCTTCCCATGTGCATTGCTCGTTT  Raphanus sativus cv Rat-Tail Radish #3870
FD547916       --> TAAGGCCTGTGATGATGACCAAACATTCTTCCCATGTGCATTGCTCGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921056       --> ..................................................  Raphanus raphanistrum subsp. landra
FD984654       --> TAAGGCCTGTGATGGTGTCCAAACATTCTTCCCATGTGCATTGCTCGTTT  Raphanus raphanistrum subsp. landra
FD945689       --> TAAGGCCTGTGATGATGACCAAACATTCTTCCCATGCGCATTGCTCGTTT  Raphanus sativus cv Early Scarlet Globe

               501    -    551
UN22144        --> GGCCATGGTTCGTTCTCTCTTATGAGCGTTTTGGTGACCTCCAAGAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- GGCCATGGTTCGTTCTCTCTTATGAGCGTTTTGGTGACCTCCAAGAGCTT  Raphanus sativus cv Rat-Tail Radish #3870
FD552085       <-- AGCCATCGTTCGTTCTCTCTTATGAGCGTTTTAGTGACCTCCAAGAGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD950151       <-- AGCCATCGTTCGTTCTCTCTTATGAGCGTTTTGGTGACCTCCAAGAGCTT  Raphanus sativus cv Early Scarlet Globe
EY925612       <-- GGCCATGGTTCGTTCTCTCTTATGAGCGTTTTGGTGACCTCCAAGAGCTT  Raphanus raphanistrum subsp. landra
EY942209       --> GGCCATGGTTCGTTCTCTCTTATGAGCGTTTTGGTGACCTCCAAGAGCTT  Raphanus sativus cv Rat-Tail Radish #3870
FD547916       --> AGCCATCGTTCGTTCTCTCTTATGAGCGTTTTAGTGACCTCCAAGAGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921056       --> ..................................................  Raphanus raphanistrum subsp. landra
FD984654       --> GGCCATGGTTCGTTCTCTCTTATGAGCGTTTTGGTGACCTCCAAGAGCTT  Raphanus raphanistrum subsp. landra
FD945689       --> AGCCATCGTTCGTTCTCTCTTATGAGCGTTTTGGTGACCTCCAAGAGCTT  Raphanus sativus cv Early Scarlet Globe

               551    -    601
UN22144        --> GAGAGCTATAGAACTTGCGTCGGCAGTAGTTACAGGAGAAGACTCTCGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- GAGAGCTATAGAACTTGCGTCGACAGTAGTTACAGGAGAAGACTCTCGGG  Raphanus sativus cv Rat-Tail Radish #3870
FD552085       <-- GAGAGCTATAGAACTTGCGTCGGCAGTAGTTACAGGAGAAGACTCTCGGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD950151       <-- GAGAGCTATAGAACTTGCGTCGGCAGTAGTTACAGGAGAAGACTCTCGGG  Raphanus sativus cv Early Scarlet Globe
EY925612       <-- GAGAGCTATAGAACTTGCGTCGACAGTAGTTACAGGAGAAGACTCTCGGG  Raphanus raphanistrum subsp. landra
EY942209       --> GAGAGCTATAGAACTTGCGTCGACAGTAGTTACAGGAGAAGACTCTCGGG  Raphanus sativus cv Rat-Tail Radish #3870
FD547916       --> GAGAGCTATAGAACTTGCGTCGGCAGTAGTTACAGGAGAAGACTCTCGGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921056       --> ..................................................  Raphanus raphanistrum subsp. landra
FD984654       --> GAGAGCTATAGAACTTGCGTCGACAGTAGTTACAGGAGAAGACTCTCGGG  Raphanus raphanistrum subsp. landra
FD945689       --> GAGAGCTATAGAACTTGCGTCGGCAGTAGTTACAGGAGAAGACTCTCGGG  Raphanus sativus cv Early Scarlet Globe

               601    -    651
UN22144        --> TTGGATTGACACTTTGTGCCCTTTTGTTCATCGTTGTTGAAACTATCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- TTGGATTGACACTTTGTGCCCTTTTCTTCATCGTTGTTGAAACTATCATT  Raphanus sativus cv Rat-Tail Radish #3870
FD552085       <-- TTGGATTGACACTTCGTGCCATTTTGTTCATCGTTGTTGAAACTATCATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD950151       <-- TTGGATTGACACTTTGTGCCATTTTGTTCATCGTTGTTGAAACTATCATT  Raphanus sativus cv Early Scarlet Globe
EY925612       <-- TTGGATTGACACTTTGTGCCCTTTTCTTCATCGTTGTCGAAACTATCATT  Raphanus raphanistrum subsp. landra
EY942209       --> TTGGATTGACACTTTGTGCCCTTTTCTTCATCGTTGTTGAAACTATCATT  Raphanus sativus cv Rat-Tail Radish #3870
FD547916       --> TTGGATTGACACTTCGTGCCATTTTGTTCATCGTTGTTGAAACTATCATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921056       --> ..................................................  Raphanus raphanistrum subsp. landra
FD984654       --> TTGGATTGACACTTTGTGCCCTTTTCTTCATCGTTGTTGAAACTATCATT  Raphanus raphanistrum subsp. landra
FD945689       --> TTGGATTGACACTTTGTGCCATTTTGTTCATCGTTGTTGAAACTATCATT  Raphanus sativus cv Early Scarlet Globe

               651    -    701
UN22144        --> GAGCTTGAGATCGAGCGAGAGAGGGATAATCGATTCTTGTTTGGATAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- GAGCTTGAGATCGAGCGAGAGAGGGATAATCGATTCTTGTTTGGATAGAT
FD552085       <-- GAGCTTGAGATCGAGCGAGAGAGGGATAATCGATTCTTGTTTGGATAGAT
FD950151       <-- GAGCTTGAGATCGAGGGAGAGAGGGATAATCGATTCTTGTTTGGATAGAT
EY925612       <-- GAGCTTGAGATCGAGCGAGAGAGGGATAATCGATTCTTGTTTGGATAGAT
EY942209       --> GAGCTTGAGATCGAGCGAGAGAGGGATAATCGATTCTTGTTTGGATAGAT
FD547916       --> GAGCTTGAGATCGAGCGAGAGAGGGATAATCGATTC..............
EY921056       --> ..................................................
FD984654       --> GAGCTTGAGATCGAGCGAGAGAGGGATAATCGATTCTTGTTTGGATAGAT
FD945689       --> GAGCTTGAGATCGAGGGAGAGAGGGATAATCGATTC..............

               701    -    751
UN22144        --> CTTGATTTAACGAGGTATCTCCTTCTCTAGCTGGTAATTCTAGCGAGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- CTTGATTTAACGAGGTATCTCCTTCTCTAGCTGGTAATTCTAGCGAGGCA
FD552085       <-- CTTGATTTAACGAGGTATCTCCTTCTCTAGCTGGTAATTCTAGCGAGGCA
FD950151       <-- CTTGATTTAACGAGGTATCTCCTTCTCTAGCTGGTAATTCTAGCGAGGCA
EY925612       <-- CTTGATTTAACGAGGTATCTCCTTCTCTAGCTGGTAATTCTAGCGAGGCA
EY942209       --> CTTGATTTAACGAGGTATCTCCTTCTCTAGCTGGTAATTCTAGCGAGGCA
FD547916       --> ..................................................
EY921056       --> ..................................................
FD984654       --> CTTGATTTAACGAGGCATCTCCTTCTCTAGCTGGTAATTCTAGCGAGGCA
FD945689       --> ..................................................

               751    -    801
UN22144        --> TCATCAGATTCCGTCATTTTATCTTAACAAAGATTATGTTGAGATCTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- TCATCAGATTCCGTCATTTTATCTTAACAAAGATTATGTTGAGATCTGGG
FD552085       <-- TCATCAGATTCCGTCATTTTATCTTAACAAAGATTATGTTGAGATCTGGG
FD950151       <-- TCATCAGATTCCGTCATTTTATCTTAACAAAGATTATGTTGAGATCTGGG
EY925612       <-- TCATCAGATTCCGTCATTTTATCTTAACAAAGATTATGTTGAGATCTGGG
EY942209       --> TCATCAGATTCCGTCATTTTATCTTAACAAAGATTATGTTGAGATCTGGG
FD547916       --> ..................................................
EY921056       --> ..................................................
FD984654       --> TCATCAGATTCCGTCATTTTATCTTAACAtcagcaagttc..........
FD945689       --> ..................................................

               801    -    851
UN22144        --> AATAGACAGCCGACAGAGGCTGAAGTGGTTGACTTGGAAGCTTGAGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- AATAGACAGCCGACAGAGGCTGAAGTGGTTGACTTGGAAGCTTAAGAGAA
FD552085       <-- AATAGACAGCCGACAGAGGCTGAAGTAATTGACTTGGAAGCTTGAGAGAA
FD950151       <-- AATAGACAGCCGACAGAGGCTGAAGTAATTGACTTGGAAGCTTGAGAGAA
EY925612       <-- AATAGACAGCCGACAGAGGCTGAAGTGGTTGACTTGGAAGCTTAAGAGAA
EY942209       --> A-TAGACAGCCGACAGAGGCTGA-GTGGTTGACTTGGA-GCTT-AGAGA-
FD547916       --> ..................................................
EY921056       --> ..................................................
FD984654       --> ..................................................
FD945689       --> ..................................................

               851    -    901
UN22144        --> GTTGTACTCTTTGAGTTAACCAAAAATGGGTCAATCCAGATGTATAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- GTTGTACTCTTTGAGTTAACCAAAAATGGGTCAATCCAGATGTATAAGGA
FD552085       <-- GTTGTACTCTTTGAGTTAACCAAAAATGGGTCAATCCAGATGTATAAAGA
FD950151       <-- GTTGTACTCTTTGAGTTAACCAAAAATGGGTCAATCCAGATGTATAAGGA
EY925612       <-- GTTGTACTCTTTGAGTTAACCAAAAATGGGTCAATCCAGATGTATAAGGA
EY942209       --> GTTGTACTCTTTGAGTTA-CCAAAAtgg......................
FD547916       --> ..................................................
EY921056       --> ..................................................
FD984654       --> ..................................................
FD945689       --> ..................................................

               901    -    951
UN22144        --> AAATAAAAGCCAGAGAGAAGAGATAGGATTGGTGATGAAAAGTAGAGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- AAATAAAAGCCAGAGAGAAGAGATAGGATTGGTGATGAAAAGTAGAGAAC
FD552085       <-- AAATAAAAGCCAGAGAGAAGAGATAGGATTGGTGATGAAAAGTAGAGAAC
FD950151       <-- AAATAAAAGCCAGAGAGAAGAGATAGGATTGGTGATGAAAAGTAGAGAAC
EY925612       <-- AAATAAAAGCCAGAGAGAAGAGATAGGATTGGTGATGAAAGGTAGAGAAC
EY942209       --> ..................................................
FD547916       --> ..................................................
EY921056       --> ..................................................
FD984654       --> ..................................................
FD945689       --> ..................................................

               951    -   1001
UN22144        --> AAGAGGTACTGAAGAAGAGAGAGAGA------TTTATGTCTAGACAAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- AAGAGGTACTGAAGAAGAGAGAGAGAGAGAGATTTATGTCTAGACAAATA
FD552085       <-- AAGAGGTACTGAAGAAGAGAGAGAGA------TTTATGTCTAGACAAATA
FD950151       <-- AAGAGGTACTGAAGAAGAGAGAGAGA------TTTATGTCTAGACAAATA
EY925612       <-- AAGAGGTACTGAAGAAGAGcc.............................
EY942209       --> ..................................................
FD547916       --> ..................................................
EY921056       --> ..................................................
FD984654       --> ..................................................
FD945689       --> ..................................................

               1001   -   1051
UN22144        --> TGGAAAACACAAATGTTGGAGAGATGGGAATGGTCTCTGGTGGAAACACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY946040       <-- TGGAAAACACAAATGTTGGAGAGATGGGcc....................
FD552085       <-- TGGAAAACACAAATGTTGG...............................
FD950151       <-- TGGAAAACACAAATGTTGGAGAGATGGGAATGGTCTCTGGTGGAAACACA
EY925612       <-- ..................................................
EY942209       --> ..................................................
FD547916       --> ..................................................
EY921056       --> ..................................................
FD984654       --> ..................................................
FD945689       --> ..................................................

               1051   -   1101
UN22144        --> TGTGGCC
                   ~~~~~~~
EY946040       <-- .......
FD552085       <-- .......
FD950151       <-- TGTGGCC
EY925612       <-- .......
EY942209       --> .......
FD547916       --> .......
EY921056       --> .......
FD984654       --> .......
FD945689       --> .......