RadishBase

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Alignment for radish unigene UN22175

               1      -     51
UN22175        --> GCTCGGTAACATCTTTAGTAGGAATGCGTTGTATAAAAGAAGATTTGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- ..................................................
FD551775       <-- ..................................................
FD563973       <-- ..................................................
EV535084       <-- ..................................................
EV539562       <-- ..................................................
EW725938       <-- ..................................................
EY893174       --> GCTCGGTAACATCTTTAGTAGGAATGCGTTGTATAAAAGAAGATTTGCTT
EW729504       --> ................AGTAGGAATGCGTTGTATAAAAGAAGATTTGCTT
FD582740       --> ................cGTAGGAATGCGTTGTATAAAAGAAGATTTGCTT
FD943308       --> ..............................cTATCAAAGAAGATTTGCTT
FD567570       --> ..............................................GCTT
EV546895       --> ..................................................
FD547619       --> ..................................................
EV543317       --> ..................................................
FY431802       --> ..................................................

               51     -    101
UN22175        --> GTGAAACTATTCCAAAGGAGGT-CCGAAAACTAGTAAGCCAAAGATGT-T
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- ..................................................
FD551775       <-- ..................................................
FD563973       <-- ..................................................
EV535084       <-- ..................................................
EV539562       <-- ..................................................
EW725938       <-- ..................................................
EY893174       --> GTGAAACTATTCCAAAGGAGGT-CCGAAAACTAGTAAGCCAAAGATGT-T
EW729504       --> GTGAAACTATTCCAAAGGAGGT-CCGAAAACTAGTAAGCCAAAGATGT-T
FD582740       --> GTGAAACTATTCCAAAGGAGGT-CCGAAAACTAGTAAGCCAAAGATGT-T
FD943308       --> GTGAAACTATTCCAAAGGAGGTTTCAAAAACTAGTAAGCCAAAGACGTGT
FD567570       --> GTGAAACTATTCCAAAGGAGGT-CCGAAAACTAGTAAGCCAAAGATGT-T
EV546895       --> GTGAAACTATTCCAAAGGAGGTTTCAAAAACTAGTAAGCCAAAGATGTGT
FD547619       --> ................................gGTAAGCCAAAGATGT-T
EV543317       --> ....................................AGCCAAAGATGT-T
FY431802       --> ..................................................

               101    -    151
UN22175        --> TTTTATCCTTTGGGATATTCTTGCAATGCCACAATGGAAAAATGACAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- ..................................................
FD551775       <-- ..................................................
FD563973       <-- ..................................................
EV535084       <-- ..................................................
EV539562       <-- ..................................................
EW725938       <-- ..................................................
EY893174       --> TTTTATCCTTTGGGATATCCTTGCAATGCCACAATGGAAAAATGACAGTA
EW729504       --> TTTTATCCTTTGGGATATCCTTGCAATGCCACAATGGAAAAATGACAGTA
FD582740       --> TTTTATCCTTTGGGATATCCTTGCAATGCCACAATGGAAAAATGACAGTA
FD943308       --> TTTTATCCTTTGGGATATTCTTGCAATGCCACAATGGAAAAATGACAGTA
FD567570       --> TTTTATCCTTTGGGATATCCTTGCAATGCCACAATGGAAAAATGACAGTA
EV546895       --> TTTTATCCTTTGGGATATTCTTGCAATGCCACAATGGAAAATTGACAGTA
FD547619       --> TTTTATCCTTTGGGATATTCTTGCAATGCCACAATGGAAAAATGACAGTA
EV543317       --> TTTTATCCTTTGGGATATTCTTGCAATGCCACAATGGAAAAATGACAGTA
FY431802       --> ..................................................

               151    -    201
UN22175        --> TTTCATAAGAAAAGATAGACGATAACACCAAAAA--CACCGTTTCACTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- .................................A--CACCGTTTCACTAG
FD551775       <-- ...........................................TCACTAG
FD563973       <-- ..................................................
EV535084       <-- ..................................................
EV539562       <-- ..................................................
EW725938       <-- ..................................................
EY893174       --> TTTCATAAGAAAAGATAGACGATAACACCAAAAA--CACCGTTTCACTAG
EW729504       --> TTTCATAAGAAAAGATAGACGATAACACCAAAAA--CACCGTTTCACTAG
FD582740       --> TTTCATAAAAAAAGATAGACGATAACACCAAAAA--CACCGTTTCACTAG
FD943308       --> TTTCATAAGAAAAGATAGACGATAACACCAAAAA-ACACCGTTTCACTAG
FD567570       --> TTTCATAAGAAAAGATAGACGATAACACCAAAAA--CACCGTTTCACTAG
EV546895       --> TTTCATAAGAAAAGATAGACGATAACACCAAAAAAACACCGTTTCACTAG
FD547619       --> CTTCATAAGAAAAGATAGACGATAACACCAAAAA--CACCGTTTCACTAG
EV543317       --> TTTCATAAGAAAAGATAGACGATAACACCAAAAA--CACCGTTTCACTAG
FY431802       --> ..............ATAGACGATAACACCAAAAAAACACCGTTTCACTAG

               201    -    251
UN22175        --> ATAAAGAGAGCTGAAGGTAACACAGACATTTCCTCATTCCAGCTTGATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- ATAAAGAGAGCTGAAGGCAACACAGACAATTCCTCACTCCAGCTTGATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551775       <-- ATAAAGAGAGCTGAAGGTAACACAGACAATTCCTCATTCCAGCTTGATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD563973       <-- ..................................................  Raphanus sativus var. oleiformis
EV535084       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539562       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725938       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY893174       --> ATAAAGAGAGCTGAAGGTAACA--GACATTTCCTCATTCCAGTTTGATGC  Raphanus raphanistrum subsp. maritimus
EW729504       --> ATAAAGAGAGCTGAAGGTAACA--GACATTTCCTCATTCCAGCTTGACGC  Raphanus sativus cv Early Scarlet Globe
FD582740       --> ATAAAGAGAGCTGAAGGTAACA--GACATTTCCTCATTCCAGCTTGACGC  Raphanus sativus cv Rat-Tail Radish #3870
FD943308       --> ATAAAGAGAGCTGAAGGTAACACAGACATTTCCTCATTCCAGCTTGATGC  Raphanus sativus cv Early Scarlet Globe
FD567570       --> ATAAAGAGAGCTGAAGGCAACA--GACATTTCCTCATTCCAGCTTGACGC  Raphanus sativus var. oleiformis
EV546895       --> ATAAAGAGAGCTGAAGGCAACACAGACAATTCCTCACTCCAGCTTGATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547619       --> ATAAAGAGAGCTGAAGGTAACACAGACAATTCCTCATTCCAGCTTGATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV543317       --> ATAAAGAGAGCTGAAGGTAACACAGACATTTCCTCATTCCAGCTTGATGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FY431802       --> ATAAAGAGAGCTGAAGGTAACACAGACAATTCCTCACTCCAGCTTGATGC  Raphanus sativus cv GSK3-1

               251    -    301
UN22175        --> GGTCCATGTCGTTTATCACACCTTCAAGCTTTGCAATCTGCCGCAAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- GGTCCATGTCGTTTATCACACTTTCAAGCTTTGCAATCTGCCGCAAGAAG
FD551775       <-- GGTCCATGTCGTTTATCACACCTTCAAGCTTTGCAATCTGCCGCAAGAAG
FD563973       <-- ..................................................
EV535084       <-- ..................................................
EV539562       <-- ..................................................
EW725938       <-- ..................................................
EY893174       --> GGTCCATGTCGTTTATCACACCTTCAAGCTTTGCAATCTGCCGCAAGAAG
EW729504       --> GGTCCATGTCGTTTATCACACCTTCAAGCTTTGCAATCTGCCGCAAGAAG
FD582740       --> GGTCCATGTCGTTTATCACACCTTCAAGCTTTGCTATCTGCCGCAAGAAG
FD943308       --> GGTCCATGTCGTTTATCACACCTTCAAGCTTTGCAATCTGCCGCAAGAAG
FD567570       --> GGTCCATGTCGTTTATCACACCTTCAAGCTTTGCAATCTGCCGCAAGAAG
EV546895       --> GGTCCATGTCGTTTATCACACCTTCAAGCTTTGCAATCTGCCGCAAGAAG
FD547619       --> GGTCCATGTCGTTTATCACACCTTCAAGCTTTGCAATCTGCCGCAAGAAA
EV543317       --> GGTACATGTCATTTATCACACCTTCAAGCTTTGCAATCTGCCGCAAGAAG
FY431802       --> GGTCCATGTCGTTTATCACACCTTCAAGCTTTGCAATCTGCCGCAAGAAG

               301    -    351
UN22175        --> AAATCTCCATAACGCTTTGCAGGTTTTGATTCCACAACGTAGATCATGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- AAATCACCATAACGCTTTGCAGGTTTTGATTCCACGACGTAGATCATGTC
FD551775       <-- AAATCTCCATAACGCTTTGCAGGTTTTGATTCCACAACGTAGATCATGTC
FD563973       <-- .....................aggTTTGATTCCACAACGTAGATCATGTC
EV535084       <-- ...........................GATTCCACAACGTAGATCATGTC
EV539562       <-- ...........................GATTCCACAACGTAGATCATGTC
EW725938       <-- ..................................................
EY893174       --> AAATCTCCATAACGCTTTGCAGGTTTTGATTCCACAACGTAGATCATGTC
EW729504       --> AAATCTCCATAACGCTTTGCAGGTTTTGATTCCACAACGTAGATCATGTC
FD582740       --> AAATCTCCATAACGCTTTGCAGGTTTTGATTCCACAACGTAAATCATGTC
FD943308       --> AAATCACCATAACGCTTTGCAGGTTTTGATTCCACAACGTAAATCATGTC
FD567570       --> AAATCTCCATAACGCTTTGCAGGTTTTGATTCCACAACGTAAATCATGTC
EV546895       --> AAATCACCATAACGCTTTGCAGGTTTTGATTCCACGACGTAAATCATGTC
FD547619       --> AAATCTCCATAACGCTTTGCAGGTTTTGATTCCACAACGTAAATCATGTC
EV543317       --> AAATCTCCATAACGCTTTGCAGGTTTTGATTCCACAACGTAGATCATGTC
FY431802       --> AAATCACCATAACGCTTTGCAGGTTTTGATTCCACAACGTAGATCATGTC

               351    -    401
UN22175        --> ATTGTTGATGTAGAAATCAATGTCTGCATTAGAGATGATCTTCCCATCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- GTTGTTGATGTAGAAATCAATGTCTGCATTAGAGATGATCTTCCCATCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551775       <-- ATTGTTGATGTAGAAATCAATGTCTGCATTAGAGATGATCTTCCCATCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD563973       <-- ATTGTTGATGTAGAA-TCAATGTCTGCATTGGAGATGATCTTCCCATCAG  Raphanus sativus var. oleiformis
EV535084       <-- ATTGTTGATGTAGAAATCAATGTCTGCATTAGAGATGATCTTCCCATCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539562       <-- ATTGTTGATGTAGAAATCAATGTCTGCATTAGAGATGATCTTCCCATCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725938       <-- ......GATGTAGAAATCAATGTCTGCATTGGAGATGATCT-CCCATCAG  Raphanus sativus cv Early Scarlet Globe
EY893174       --> ATTGTTGATGTAGAAATCAATGTCTGCATTGGAGATGATCTTCCCATCAG  Raphanus raphanistrum subsp. maritimus
EW729504       --> ATTGTTGATGTAGAAATCAATGTCTGCATTGGAGATGATCTTCCCATCAG  Raphanus sativus cv Early Scarlet Globe
FD582740       --> ATTGTTGATGTAGAAATCAATGTCTGCATTAAAGATGATCTTCCCATCAA  Raphanus sativus cv Rat-Tail Radish #3870
FD943308       --> GTTGTTGATGTAGAAATCAATGTCTGCATTGGAAATGATCTTCCCATCAG  Raphanus sativus cv Early Scarlet Globe
FD567570       --> ATTGTTGATGTAGAAATCAATGTCTGCATTGGAGATGATCTTCCCATCAG  Raphanus sativus var. oleiformis
EV546895       --> GTTGTTGATGTAGAAATCAATGTCTGCATTAGAGATGATCTTCCCATCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547619       --> ATTGTTGATGTAGAAATCAATGTCTGCATTAAAGATGATCTTCCCATCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV543317       --> ATTGTTGATGTAGAAATCAATGTCTGCATTAGAGATGATCTTCCCATCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY431802       --> GTTGTTGATGTAGAAATCAATGTCTGCATTAGAGATGATCTTCCCATCAG  Raphanus sativus cv GSK3-1

               401    -    451
UN22175        --> AACCAACTGAATGTGTCTTGTGCTTGTATGTTAACAATATGGTCCTTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- AACCAACTGAATGAGTCTTGTGCTTGTATGTTAACAATATGGTCCTTAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551775       <-- AACCAACTGAATGAGTCTTGTGCTTGTATGTTAACAATATGGTCCTTAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD563973       <-- AACCAACTGAATGTGTCTTGTGCTTGTATGTTAGCAATATGGTACTTAGA  Raphanus sativus var. oleiformis
EV535084       <-- AACCAACTGAATGTGTCTTGTGCTTGTATGTTAACAATATGGTCCTTAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539562       <-- AACCAACTGAATGTGTCTTGTGCTTGTATGTTAACAATATGGTCCTTAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725938       <-- A-CCAACTGAATGTGTCTTGTGCTTGTATGTTAGCAATATGGTCCTTAGA  Raphanus sativus cv Early Scarlet Globe
EY893174       --> AACCAACTGAATGTGTCTTGTGCTTGTATGTTAGCAATATGGTCCTTAGA  Raphanus raphanistrum subsp. maritimus
EW729504       --> AACCAACTGAATGTGTCTTGTGCTTGTATGTTAGCAATATGGTCCTTAGA  Raphanus sativus cv Early Scarlet Globe
FD582740       --> AACCAACTGAATGTGTCTTGTGCTTGTATGTTAGCAATATGGTCCTTAGA  Raphanus sativus cv Rat-Tail Radish #3870
FD943308       --> AACCAACTGAATGTGTCTTGTGCTTGTATGTTAGCAATATGGTCCTTAGA  Raphanus sativus cv Early Scarlet Globe
FD567570       --> AACCAACTGAATGTGTCTTGTGCTTGTATGTTAGCAATATGGTACTTAGA  Raphanus sativus var. oleiformis
EV546895       --> AACCAACTGAATGAGTCTTGTGCTTGTATGTTAACAATATGGTCCTTAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547619       --> AACCAACTGAATGAGTCTTGTGCTTGTATGTTAACAATATGGTCCTTAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV543317       --> AACCAACTGAATGTGTCTTGTGCTTGTATGTTAACAATATGGTCCTTAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY431802       --> AACCAACTGAATGAGTCTTGTGCTTGTATGTTAACAATATGGTCCTTAGA  Raphanus sativus cv GSK3-1

               451    -    501
UN22175        --> GTTGGTTCATCAACTTCCATGTAGTTTGCGAGCTTAGCAAGAGAGATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- GTTGGTTCATCAACTTCCATGTAGTTTGCGAGCTTAGCAAAAGAGATGGA
FD551775       <-- GTTGGTTCATCAACTTCCATGTAGTTTGCGAGCTTAGCAAGAGAGATGGA
FD563973       <-- GTTGGTTCATCAACTTCCATGTAGTTTGCGAGCTTAGCAAGAGAGATGGA
EV535084       <-- GTTGGTTCATCAACTTCCATGTAGTTTGCGAGCTTAGCAAGAGAGATAGA
EV539562       <-- GTTGGTTCATCAACTTCCATGTAGTTTGCGAGCTTAGCAAGAGAGATAGA
EW725938       <-- GTTGGTTCATCAACTTCCATGTAGTTCGCGAGCTTAGCAAGAGAGATGGA
EY893174       --> GTTGGTTCATCAACTTCCATGTAGTTTGCGAGCTTAGCAAGAGAGATGGA
EW729504       --> GTTGGTTCATCAACTTCCATGTAGTTCGCGAGCTTAGCAAGAGAGATGGA
FD582740       --> GTTGGTTCATCAACTTCCATGTAGTTTGCGAGCTTAGCAAGAGAGATGGA
FD943308       --> GTTGGTTCATCAACTTCCATGTAGTTTACGAGCTTAGCAAGAGAGATGGA
FD567570       --> GTTGGTTCATCAACTTCCATGTAGTTTGCGAGCTTAGCAAGAGAGATGGA
EV546895       --> GTTGGTTCATCAACTTCCATGTAGTTTGCGAGCTTAGCAAAAGAGATGGA
FD547619       --> GTTGGTTCATCAACTTCCATGTAGTTTGCGAGCTTAGCAAGAAAGATGGA
EV543317       --> GTTGGTTCATCAACTTCCATGTAGTTTGCGAGCTTAGCAAGAGAGATAGA
FY431802       --> GTTGGTTCATCAACTTCCATGTAGTTTGCGAGCTTAGCAAAAGAGATGGA

               501    -    551
UN22175        --> GGAGTAAACTTTAAGGAACGTCCTCACTCCTGACAACAGCTGCTGCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- GGAGTAAACTTTAAGGAACGTCCTCACTCCTGACAACAGCTGCTGCTGCT
FD551775       <-- GGAGTAAACTTTAAGGAACGTCCTCACTCCTGACAAAAGCTGCTGCTGCT
FD563973       <-- GGAGTAAACTTTAAGGAACGTCCTCACTCCTGACAACAGCTGCTGCTGCT
EV535084       <-- GGAGTAAACTTTAAGGAATGTCCTCACTCCTGACAACAGCTGCTGCTGCT
EV539562       <-- GGAGTAAACTTTAAGGAATGTCCTCACTCCCGACAACAGCTGCTGCTGCT
EW725938       <-- GGAGTAAACTTTAAGGAACGTCCTCACTCCTGACAACAGCTGCTGCTGCT
EY893174       --> GGAGTAAACTTTAAGGAACGTCCTCACTCCTGACAACAGCTGCTGCTGCT
EW729504       --> GGAGTAAACTTTAAGGAACGTCCTCACTCCTGACAACAGCTGCTGCTGCT
FD582740       --> GGAGTAAACTTTAAGGAACGTCCTCACTCCTGACAACAGCTGCTGCTGCT
FD943308       --> GTAGTAAACTTTAAGGAACGTCCTCACTCCTGACAACAGCTGCTGCTGCT
FD567570       --> GGAGTAAACTTTAAGGAACGTCCTCACTCCTGACAACAGCTGCTGCTGCT
EV546895       --> GGAGTAAACTTTAAGGAACGTCCTCACTCCTGACAACAGCTGCTGCTGCT
FD547619       --> GGAGTAAACTTTAAGGAACGTCCTCACTCCTGACAAAAGCTGCTGCTGCT
EV543317       --> GGAGTAAACTTTAAGGAATGTCCTCACTCCCGACAACAGCTGCTGCTGCT
FY431802       --> GGAGTAAACTTTAAGGAACGTCCTCACTCCTGACAACAGCTGCTGCTGCT

               551    -    601
UN22175        --> TCACCTCATAAAGGAACATCTTCAACTGAAGCCTGTAAGCATCCTGATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- TCACCTCATAAAGGAACATCTTCAACTGAAGCCTGTACGCATCCTGATTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551775       <-- TCACCTCATAAAGAAACATCTTCAACTGAAGCCTGTAAGCATCCTGATTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD563973       <-- TCACCTCATAAAGGAACATCTTCAACTGAAGCCTGTAAGCATCCTGATTG  Raphanus sativus var. oleiformis
EV535084       <-- TCACCTCATAAAGGAACATCTTCAACTGAAGCCTGTACGCATCCTGATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539562       <-- TCACCTCATAAAGGAACATCTTCAACTGAAGCCTGTACGCATCCTGATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725938       <-- TCACCTCATAAAGGAACATCTTCAACTGAAGCCTGTAAGCATCCTGATTG  Raphanus sativus cv Early Scarlet Globe
EY893174       --> TCACCTCATAAAGGAACATCTTCAACTGAAGCCTGTAAGCATCCTGATTG  Raphanus raphanistrum subsp. maritimus
EW729504       --> TCACCTCATAAAGGAACATCTTCAACTGAAGCCTGTAAGCATCCTGATTG  Raphanus sativus cv Early Scarlet Globe
FD582740       --> TCACCTCATAAAGGAACATCTTCAACTGAAGCCTGTAAGCATCCTGATTG  Raphanus sativus cv Rat-Tail Radish #3870
FD943308       --> TCACCTCATAAAGGAACATCTTCAACTGAAGCCTGTACGCATCCTGATTG  Raphanus sativus cv Early Scarlet Globe
FD567570       --> TCACCTCATAAAGGAACATCTTCAACTGAAGCCTGTAAGCATCCTGATTG  Raphanus sativus var. oleiformis
EV546895       --> TCACCTCATAAAGGAACATCTTCAACTGAAGCCTGTACGCATCCTGATTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547619       --> TCACCTCATAAAGAAACATCTTCAACTGAAGCCTGTAAGCATCCTGATTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV543317       --> TCACCTCATAAAGGAACATCTTCAACTGAAGCCTGTACGCATCCTGATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY431802       --> TCACCTCATAAAGGAACATCTTCAACTGAAGCCTGTACGCATCCTGATTG  Raphanus sativus cv GSK3-1

               601    -    651
UN22175        --> TAATTGACAAGAGGCTCCTCGAAACTTGGTGCGGAAGGGGTGATGAACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- TAATTGACAAGAGGCTCCTCGAAACTTGGTGCGGAAGGGGTGACGAACTT
FD551775       <-- TAATTGACAAGAGGCTCC-CGAAACTTGGTGCGGAAGGGGTGATGAACTT
FD563973       <-- TAATTGACAAGAGGCTCCTCGAAACTTGGTGCGGAAGGGGTGATGAACTT
EV535084       <-- TAATTGACAAGAGGCTCCTCGAAACTTGGTGCGGAAGGGGTGATAAACTT
EV539562       <-- TAATTGACAAGAGGCTCCTCGAAACTTGGTGCGGAAGGGGTGATAAACTT
EW725938       <-- TAATTGACAAGAGGCTCCTCGAAACTTGGTGCGGAAGGGGTGATGAACTT
EY893174       --> TAATTGACAAGAGGCTCCTCGAAACTTGGTGCGGAAGGGGTGATGAACTT
EW729504       --> TAATTGACAAGAGGCTCCTCGAAACTTGGTGCGGAAGGGGTGATGAACTT
FD582740       --> TAATTGACAAGAGGCTCCTCGAAACTTGGTGCGGAAGGGGTGATGAACTT
FD943308       --> TAATTGACAAGAGGCTCCTCGAAACTTGGTGCGGAAGGGGTGATGAACTT
FD567570       --> TAATTGACAAGAGGCTCCTCGAAACTTGGTGCGGAAGGGGTGATGAACTT
EV546895       --> TAATTGACAAGAGGCTCCTCGAAACTTGGTGCGGAAGGGGTGACGAACTT
FD547619       --> TAATTGACAAGAGGCTCC-CGAAACTTGGTGCGGAAGGGGTGATGAACTT
EV543317       --> TAATTGACAAGAGGCTCCTCGAAACTTGGTGCGGAAGGGGTGATAAACTT
FY431802       --> TAATTGACAAGAGGCTCCTCGAAACTTGGTGCGGAAGGGGTGATGAACTT

               651    -    701
UN22175        --> GGGGCATGCGTAAGAGAAGAGCTCGTCATAGATACCAAACGCCTCATCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- GGGGCATGCGTAAGAGAAGAGCTCGTCATAGATACCAAACGCCTCATCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551775       <-- GGGGCATGCGTAAGAGAAGAGCTCGTCATAGATACCAAACGCCTCATCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD563973       <-- GGGGCACGCGTAAGAGAAGAGCTCGTCATAGATACCAAACGCCTCATCGT  Raphanus sativus var. oleiformis
EV535084       <-- AGGGCATGCGTAAGAGAAGAGCTCGTCATAGATACCAAACGCCTCATCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539562       <-- AGGGCATGCGTAAGAGAAGAGCTCGTCATAGATACCAAACGCCTCGTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725938       <-- GGGGCACGCGTAAGAGAAGAGCTCGTCATAGATACCAAACGCCTCATCGT  Raphanus sativus cv Early Scarlet Globe
EY893174       --> GGGGCATGCGCAAGAGAAGAGCTCGTCATAGATACCAAACGCCTCATCGT  Raphanus raphanistrum subsp. maritimus
EW729504       --> GGGGCACGCGTAAGAGAAGAGCTCGTCATAGATACCAAACGCCTCATCGT  Raphanus sativus cv Early Scarlet Globe
FD582740       --> GGGGCACGCGTAAGAGAAGAGCTCGTCATAGATACCAAACGCCTCATCGT  Raphanus sativus cv Rat-Tail Radish #3870
FD943308       --> GGGGCATGCGTAAGAGAAGAGCTCGTCATAGATACCAAACGCCTCATCGT  Raphanus sativus cv Early Scarlet Globe
FD567570       --> GGGGCACGCGTAAGAGAAGAGCTCGTCATAGATACCAAACGCCTCATCGT  Raphanus sativus var. oleiformis
EV546895       --> GGGGCATGCGTAAGAGAAGAGCTCGTCATAGATACCAAACGCCTCATCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547619       --> GGGGCATGCGTAAGAAAAGAGCTCGTCATAGATACCAAACGCCTCATCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV543317       --> AGGGCATGCGTAAGAGAAGAGCTCGTCATAGATACCAAACGCCTCGTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY431802       --> GGGGCATGCGTAAGAGAAGAGCTCGTCATAGATACCAAACGCCTCATCGT  Raphanus sativus cv GSK3-1

               701    -    751
UN22175        --> CGTACCTCTGCATCCTCATCATCTTCTCACCGTACTTCTCACGCAACTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- CGTACCTCTGCATCCTCATCATCTTCTCACCGTACTTCTCACGCAGCTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551775       <-- CGTACCTCTGCATCCTCATCATCTTATCACCGTACTTCTCACGCAGCTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD563973       <-- CGTACCTCTGCATCCTCATCATCTTCTCACCGTACTTCTCACGCAACTGA  Raphanus sativus var. oleiformis
EV535084       <-- CGTACCTCTGCATCCTCATCATCTTCTCACCGTACTTCTCACGCAACTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539562       <-- CGTACCTCTGCATCCTCATCATCTTCTCACCGTACTTCTCACGCAACTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725938       <-- CGTACCTCTGCATCCTCATCATCTTCTCACCGTACTTCTCACGCAACTGA  Raphanus sativus cv Early Scarlet Globe
EY893174       --> CGTACCTCTGCATCCTCATCATCTTCTCACCGTACTTCTCACGCAACTGA  Raphanus raphanistrum subsp. maritimus
EW729504       --> CGTACCTCTGCATCCTCATCATCTTCTCACCGTACTTCTCACGCAACTGA  Raphanus sativus cv Early Scarlet Globe
FD582740       --> CGTACCTCTGCATCCTCATCATCTTCTCACCGTACTTCTCACGCAACTGA  Raphanus sativus cv Rat-Tail Radish #3870
FD943308       --> CGTACCTCTGCATCCTCATCATCTTCTCACCGTACTTCTCACGCAGCTGA  Raphanus sativus cv Early Scarlet Globe
FD567570       --> CGTACCTCTGCATCCTCATCATCTTCTCACCGTACTTCTCACGCAACTGA  Raphanus sativus var. oleiformis
EV546895       --> CGTACCTCTGCATCCTCATCATCTTCTCACCGTACTTCTCACGCAGCTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547619       --> CGTACCTCTGCATCCTCATCATCTTATCACCGTACTTCTCACGCAGCTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV543317       --> CGTACCTCTGCATCCTCATCATCTTCTCACCGTACTTCTCACGCAACTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY431802       --> CGTACCTCTGCATCCTCATCATCTTCTCACCGTACTTCTCACGCAACTGA  Raphanus sativus cv GSK3-1

               751    -    801
UN22175        --> GAGTTGACAGACTCGTCAACGAGCTTCGTCTGAGGGCAGAGGGAGAGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- GAGTTGACAGACTCGTCAACGAGCTTCGTCTGAGGGCAGAGGGAGAGGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551775       <-- GAGTTGACAGACTCGTCAACAAGCTTCGTCTGAGGGCAGAGGGAGAGGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD563973       <-- GAGTTAACAGACTCGTCAACGAGCTTCGTCTGAGGGCAGAGAGAAAGGCA  Raphanus sativus var. oleiformis
EV535084       <-- GAGTTGACAGACTCGTCAACGAGCTTCGTCCGAGGGCAGAGGGAGAGGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539562       <-- GCGTTGACAGACTCGTCAACGAGCTTCGTCTGTGGGCAGAGGGAGAGGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725938       <-- GAGTTAACAGACTCGTCAACGAGCTTCGTCTGAGGGCAGAGAGAAAGGCA  Raphanus sativus cv Early Scarlet Globe
EY893174       --> GAGTTGACAGACTCGTC.................................  Raphanus raphanistrum subsp. maritimus
EW729504       --> GAGTTAACAGACTCGTCAACGAGCTTCGTCT...................  Raphanus sativus cv Early Scarlet Globe
FD582740       --> GAGTTAACAGACTCGTCAACGA............................  Raphanus sativus cv Rat-Tail Radish #3870
FD943308       --> GAGTTGACAGACTCGTCAAC..............................  Raphanus sativus cv Early Scarlet Globe
FD567570       --> GAGTTAACAGACTCGTCAACGAGCTTCGTCTGAGGGCAGAGAGAAAGGCA  Raphanus sativus var. oleiformis
EV546895       --> GAGTTGACAGACTCGTCAACGAGCTTCGTCTGAGGGCAGAGGGAGAGGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547619       --> GAGTTGACAGA.......................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV543317       --> GCGTTGACAGACTCGTCAACGAGCTTCGTCTGTGGGCAGAGGGAGAGGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY431802       --> GAGTTAACAGACTCGTCAACGAGCTTCGTCTGAGGGCAGAGAGAAAGGCA  Raphanus sativus cv GSK3-1

               801    -    851
UN22175        --> AACCGCAAGCAAAGCATACATCTGCTCATTCTTCTTCAGCAACTGCTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- AACCGCAAGCAAAGCATACATCTGCTCATTCTTCTTCAGCAACTGCTCAT
FD551775       <-- AACCGCAAGCAGAGCATACATCTGCTCATTCTTCTTCAGCAACTGCTCAT
FD563973       <-- AACCGCAAGCAAAGCATACATCTGCTCGTTCTTCTTCAGCAACTGCTCAT
EV535084       <-- AACCGCAAGCAAAGCATACATCTGCTCATTCTTCTTCAGCAACTGCTCAT
EV539562       <-- AACCGCAAGCAAAGCATACATCTGCTCATTCTTCTTCAGCAACTGCTCAT
EW725938       <-- AACCGCAAGCAAAGCATACATCTGCTCGTTCTTCTTCAG-AACTGCTCAT
EY893174       --> ..................................................
EW729504       --> ..................................................
FD582740       --> ..................................................
FD943308       --> ..................................................
FD567570       --> AACCGCAAGCAAAGCATACA..............................
EV546895       --> AACCGCAAGCAAAGCATACATCTGCTCATTCTTCTTCAGCAACTGCTCAT
FD547619       --> ..................................................
EV543317       --> AACCGCAAGCAAAGCATACATCTGCTCATTCTTCTTCAGCAACTGCTCAT
FY431802       --> AACCGCAAGCAAAGCATACATCTGCTCGTTCTTCTTCAGCAACTGCTCAT

               851    -    901
UN22175        --> ACTGAGGCGACTTTTGATGGTACTGCTTCGTCTTGTAAATGTAGAGGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- ACTGAGGTGACTTTTGATGGTACTGCTTCGTCTTGTAAATGTAGAGGAGG
FD551775       <-- ACTGAGGCGACTc.....................................
FD563973       <-- ACTGAGGCGACTTCTGATGGTACTGCTTCGTCTTGTAAATGTAGAGGAGG
EV535084       <-- ACTGAGGCGACTTCTGATGGTACTGCTTCGTCTTGTAAATGTAGAGGAGG
EV539562       <-- ACTGAGGCGACTTTTGATGGTACTGCTTCGTCTTGTAAATGTAGAGGAGG
EW725938       <-- ACTGAGGCGACTTCTGATGGTACTGCTTCGTCTTGTAAATGTAGAGGAGG
EY893174       --> ..................................................
EW729504       --> ..................................................
FD582740       --> ..................................................
FD943308       --> ..................................................
FD567570       --> ..................................................
EV546895       --> ACTGAGGTGACTTTTGATGGTACTGCTTCGTCTTGTAA............
FD547619       --> ..................................................
EV543317       --> ACTGAGGCGACTTTTGATGGTACTGCTTCGTCTTGTAAATGTAGAGGAGG
FY431802       --> ACTGAGGCGACTTCTGATGGTACTGCTTCGTCTTGTAAATGTAGAGGAGG

               901    -    951
UN22175        --> ATCTTGTTGAACTCACGAACCGCATCCACGTACCTCCTCAACATGAGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- ATCTTGTTGAACTCACGAACCGCATCCACATACCTCCTCAACATGAGGTT
FD551775       <-- ..................................................
FD563973       <-- ATCTTGTTGAACTCACGAACCGCATCCACGTACCTCCTCAACATGAGGTT
EV535084       <-- ATCTTGTTGAACTCACGAACCGCATCCACATACCTCCTCAACATGAGGTT
EV539562       <-- ATCTTGTTGAACTCACGAACCGCATCCACGTACCTCCTCAACATGAGGTT
EW725938       <-- ATCTTGTTGAACTCACGAACCGCATCCACGTACCTCCTCAACATGAGGTT
EY893174       --> ..................................................
EW729504       --> ..................................................
FD582740       --> ..................................................
FD943308       --> ..................................................
FD567570       --> ..................................................
EV546895       --> ..................................................
FD547619       --> ..................................................
EV543317       --> ATCTTGTTGAACTCACGAACCGCATCCACGTACCTCCTCAACATGAGGT-
FY431802       --> ATCTTGTTGAACTCACGAACCGCATCCACGTACCTCCTCAACAT......

               951    -   1001
UN22175        --> AGCGAATCCGTAGTGATAGATAGTAGCGATGTGGCATCCAATGACACTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- TGCGAATCCATAGTGATAGATcgtc.........................
FD551775       <-- ..................................................
FD563973       <-- GGCGAATCCATAGTGATAGATAGTAGCGATGTGGCACCCAATGACACTGG
EV535084       <-- AGCGAATCCGTAGTGATAGATAGTAGCGATGTGGCATCCAATGACACTGG
EV539562       <-- AGCGAATCCGTAGTGATAGATGGTAGCGATGTGGCATCCAATGACACTGG
EW725938       <-- GGCGAATCCATAGTGATAGATAGTAGCGATGTGGCACCCAATGACACTGG
EY893174       --> ..................................................
EW729504       --> ..................................................
FD582740       --> ..................................................
FD943308       --> ..................................................
FD567570       --> ..................................................
EV546895       --> ..................................................
FD547619       --> ..................................................
EV543317       --> AGCGAATCCGTAGTGATAGATGGTAGCGATGTGGCATCCAATGACACTGG
FY431802       --> ..................................................

               1001   -   1051
UN22175        --> TGTAAACACCTTGCTGAGTGATGTCAATGGGCTGAAGCCACTTGAGACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- ..................................................
FD551775       <-- ..................................................
FD563973       <-- TGTAAACACCTTGCTGAGTGACGTCAATGGGCTGCAGCCACTTGAGACCA
EV535084       <-- TGTAAACACCTTGCTG..................................
EV539562       <-- TGTAGACACCTTGCTGAGTGATGTCAATGGGCTGAAGCCACTTGAGACCA
EW725938       <-- TGTAAACACCTTGCTGAGTGATGTCAATGGGCTGAAGCCACTTGAGACCA
EY893174       --> ..................................................
EW729504       --> ..................................................
FD582740       --> ..................................................
FD943308       --> ..................................................
FD567570       --> ..................................................
EV546895       --> ..................................................
FD547619       --> ..................................................
EV543317       --> TGTAGACACCTTGCTGAGTGATGTCA........................
FY431802       --> ..................................................

               1051   -   1101
UN22175        --> GTATGGTAATCTCCCAAGAGGCAGTGAACACGGAGGAGACCGACCATGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- ..................................................
FD551775       <-- ..................................................
FD563973       <-- GTATGGTAATCACCCAAGAGGCAGTGAACACGGc................
EV535084       <-- ..................................................
EV539562       <-- GTATGGTAATCTCCCAAGAGGCAGTGAACACGAAGGAGACCGACCATGCT
EW725938       <-- GTATGGTAATCTCCCAAGAGGCAGTGCACACGGAGGAGACC.........
EY893174       --> ..................................................
EW729504       --> ..................................................
FD582740       --> ..................................................
FD943308       --> ..................................................
FD567570       --> ..................................................
EV546895       --> ..................................................
FD547619       --> ..................................................
EV543317       --> ..................................................
FY431802       --> ..................................................

               1101   -   1151
UN22175        --> GAAGTAACCAAGGACCTTCAGCACGTTGCTTCCACCGCTGTAATCATACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- ..................................................
FD551775       <-- ..................................................
FD563973       <-- ..................................................
EV535084       <-- ..................................................
EV539562       <-- GAAGTAACCAAGGACCTTCAGCACGTTGCTTCCACCGCTGTAATCATACC
EW725938       <-- ..................................................
EY893174       --> ..................................................
EW729504       --> ..................................................
FD582740       --> ..................................................
FD943308       --> ..................................................
FD567570       --> ..................................................
EV546895       --> ..................................................
FD547619       --> ..................................................
EV543317       --> ..................................................
FY431802       --> ..................................................

               1151   -   1201
UN22175        --> CGTCGGTAGCAGTGAACTGCTCGAGCCCTTCCTTCTCCTGCTCAAGAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- ..................................................
FD551775       <-- ..................................................
FD563973       <-- ..................................................
EV535084       <-- ..................................................
EV539562       <-- CGTCGGTAGCAGTGAACTGCTCGAGCCCTTCCTTCTCCTGCTCAAGAATC
EW725938       <-- ..................................................
EY893174       --> ..................................................
EW729504       --> ..................................................
FD582740       --> ..................................................
FD943308       --> ..................................................
FD567570       --> ..................................................
EV546895       --> ..................................................
FD547619       --> ..................................................
EV543317       --> ..................................................
FY431802       --> ..................................................

               1201   -   1251
UN22175        --> TGGATGATGGTGGACTTCTCCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~
EV551866       <-- ........................
FD551775       <-- ........................
FD563973       <-- ........................
EV535084       <-- ........................
EV539562       <-- TGGATGATGGTGGACTTCTCCACC
EW725938       <-- ........................
EY893174       --> ........................
EW729504       --> ........................
FD582740       --> ........................
FD943308       --> ........................
FD567570       --> ........................
EV546895       --> ........................
FD547619       --> ........................
EV543317       --> ........................
FY431802       --> ........................