RadishBase

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Alignment for radish unigene UN22178

               1      -     51
UN22178        --> GGAGACAACCAGCCCCTTTCTTTTCTCCACGATCAACGACGAAGGTCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- ..................................................
EV545902       <-- ..................................................
FD566688       <-- ..................................................
FD966507       <-- ..................................................
FD531774       <-- ..................................................
EY911594       <-- ..................................................
EX752657       <-- ..................................................
EY909529       <-- ..................................................
FD562897       --> GGAGACAACCAGCCCCTTTCTTTTCTCCACGATCAACGACGAAGGTCGAA
FD970056       --> .................................................g
EX764653       --> ..................................................
FD533297       --> ..................................................
FY452997       --> ..................................................
EY915823       --> ..................................................
EX748818       --> ..................................................

               51     -    101
UN22178        --> TACGATCGCCATTTTCCAGTCTCTCTCTCTCTCTGTGTCTTCGTTCAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- ..................................................
EV545902       <-- ..................................................
FD566688       <-- ..................................................
FD966507       <-- ..................................................
FD531774       <-- ..................................................
EY911594       <-- ..................................................
EX752657       <-- ..................................................
EY909529       <-- ..................................................
FD562897       --> TACGATCGCCATTTTCCAGTCTCTCTCTCTCTCTGTGTCTTCGTTCAATC
FD970056       --> gACGATCGCCATTTTCCAATCTCTCTCTCT----GTGTCTTCGTTCAATC
EX764653       --> ..............................gggTGTGTCTTCGTTCAATC
FD533297       --> ................................ggGTGTCTTCGTTCAATC
FY452997       --> ...............aatccctctctctatcgtcttcgttcaaTTCAATC
EY915823       --> ..................................................
EX748818       --> ..................................................

               101    -    151
UN22178        --> TTATCTCAGTGATTTACTTGCAAGAGAAGTATCCTCTTAAGCTCTCTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- ..................................................
EV545902       <-- ..................................................
FD566688       <-- ..................................................
FD966507       <-- ..................................................
FD531774       <-- ..................................................
EY911594       <-- ..................................................
EX752657       <-- ..................................................
EY909529       <-- ..................................................
FD562897       --> TTATCTCAGTGATTTACTTGCAAGAGAAGTATCCTCTTAAGCTCTCTCTA
FD970056       --> TTATCTCAGTGATTTACTTGCAAGAGAAGTATCCTCTTAAGCTCTCTCTA
EX764653       --> TTATCTCAGTGATTTACTTGCAAGAGAAGTATCCTCTTAAGCTCTCTCTA
FD533297       --> TTATCTCAGTGATTTACTTGCAAGAGAAGTATCCTCTTAAGCTCTCTCTA
FY452997       --> TTATCTCAGTGATTTACTTACAAGAGAAGTCGCCTCTTAAACTCTCTCTA
EY915823       --> .....ggAGTGATTTACTTGCAAGAGAAGTATCCTCTTAAACTCTCTCTA
EX748818       --> ..................................................

               151    -    201
UN22178        --> GAGTCTCAGTTTT--CTTTTTC--CACCATGGCCGGCCAAAACGCGCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- ..................................................
EV545902       <-- ..................................................
FD566688       <-- ..................................................
FD966507       <-- ..................................................
FD531774       <-- ..................................................
EY911594       <-- ..................................................
EX752657       <-- ..................................................
EY909529       <-- ..................................................
FD562897       --> GAGTCTCAGTTTT--CTTTTCC-ACACCATGGCCGGCCAAAACGCGCGTT
FD970056       --> GAGTCTCAGTTTT--TTTTTTC--CACCATGGCCGGCCAAAACGCGCGTT
EX764653       --> GAGTCTCAGTTTTTTCTCTTTT--CACCATGGCCGGCCAAAACGCGCGTT
FD533297       --> GAGGCTCAGTATT--TTTTCTCTTCACCATGGCCGGCCAAAACGCGCGTT
FY452997       --> GAGTCTCAGTTTT--CTTTTTC--CACCATGGCCGGCCAAAACGCGCGTT
EY915823       --> GAGGCTCAGTATT--TTTTCTCTTCACCATGGCCGGCCAAAACGCGCGTT
EX748818       --> ..................................................

               201    -    251
UN22178        --> TGAATGTGGTCCCCACTGTCACAATGCTCGGTGTGATGAAAGCTCGTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- ..................................................
EV545902       <-- ..................................................
FD566688       <-- ..................................................
FD966507       <-- ..................................................
FD531774       <-- ..................................................
EY911594       <-- ..................................................
EX752657       <-- ..................................................
EY909529       <-- ..................................................
FD562897       --> TGAATGTGGTCCCCACTGTCACAATGCTCGGTGTGATGAAAGCTCGTCTC
FD970056       --> TGAATGTGGTCCCCACTGTCACAATGCACGGTGTGATGAAAGCTCGTCTC
EX764653       --> TGAATGTGGTCCCCACTGTCACAATGCTCGGTGTGATGAAAGCTCGTCTC
FD533297       --> TGAATGTGGTCCCCACTGTCACAATGCTCGGTGTGATGAAAGCTCGTCTC
FY452997       --> TGAATGTGGTCCCCACCGTCACGATGCTCGGTGTGATGAAAGCTCGCCTC
EY915823       --> TGAATGTGGTCCCCACTGTCACAATGCTCGGTGTGATGAAAGCTCGTCTC
EX748818       --> ..................................................

               251    -    301
UN22178        --> GTTGGAGCCACAAGAGGCCACGCTCTCCTCAAGAAGAAGAGCGACGCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- ..................................................
EV545902       <-- ..................................................
FD566688       <-- ..................................................
FD966507       <-- ..................................................
FD531774       <-- ..................................................
EY911594       <-- ..................................................
EX752657       <-- ..................................................
EY909529       <-- ..................................................
FD562897       --> GTCGGAGCCACAAGAGGCCACGCTCTCCTCAAGAAGAAGAGCGACGCTCT
FD970056       --> GTCGGAGCCACAAGAGGCCACGCTCTCCTAAAGAAGAAGAGCGACGCTCT
EX764653       --> GTTGGAGCCACAAGAGGCCACGTTCTCCTAAAGAAGAAGAGCGACGCTCT
FD533297       --> GTTGGAGCCACAAGAGGCCACGCCCTCCTCAAGAAGAAGAGCGACGCTCT
FY452997       --> GTTGGAGCCACAAGAGGCCACGCTCTCCTCAAGAAGAAGAGCGACGCTCT
EY915823       --> GTTGGAGCCACAAGAGGCCACGCCCTCCTCAAGAAGAAGAGCGACGCTCT
EX748818       --> ..................................................

               301    -    351
UN22178        --> AACCGTTCAGTTCAGAGCCCTTCTCAAGAAAATCGTGACGGCCAAGGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- ......................CTCAAGAAAATCGTGACGGCGAAAGAAT
EV545902       <-- ..................................................
FD566688       <-- ..................................................
FD966507       <-- ..................................................
FD531774       <-- ..................................................
EY911594       <-- ..................................................
EX752657       <-- ..................................................
EY909529       <-- ..................................................
FD562897       --> AACCGTTCAGTTCAGAGCCCTTCTCAAGAAAATCGTGACGGCCAAGGAAT
FD970056       --> AACCGTTCAGTTCAGAGCCCTTCTCAAGAAAATCGTGACGGCCAAGGAAT
EX764653       --> AACCGTTCAGTTCAGAGCCCTTCTCAAGAAAATCGTGACAGCCAAGGAAT
FD533297       --> AACCGTTCAGTTCCGAGCCCTTCTCAAGAAAATCGTGACGGCGAAAGAAT
FY452997       --> AACCGTTCAGTTCAGAGCCCTTCTCAAGAAAATCGTGACAGCCAAGGAAT
EY915823       --> AACCGTTCAGTTCCGAGCCCTTCTCAAGAAAATCGTGACGGCGAAAGAAT
EX748818       --> ..................................................

               351    -    401
UN22178        --> CAATGGGAGATATGATGAAGACATCCTCTTTCGCTCTCACCGAAGTCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- CAATGGGAGATATGATGAAGACATCCTCCTTCGCTCTCACCGAAGTCAAG
EV545902       <-- .........ATATGATGAAGACATCCTCCTTCGCTCTCACCGAAGTCAAG
FD566688       <-- .................................CTCTCACCGAAGTCAAG
FD966507       <-- ..................................................
FD531774       <-- ..................................................
EY911594       <-- ..................................................
EX752657       <-- ..................................................
EY909529       <-- ..................................................
FD562897       --> CGATGGGAGATATGATGAAGACATCTTCTTTCGCTCTCACCGAAGTCAAG
FD970056       --> CGATGGGAGATATGATGAAGACATCCTCTTTCGCTCTCACCGAAGTCAAG
EX764653       --> CAATGGGAGATATGATGAAGACATCCTCTTTCGCTCTCACCGAAGTCAAG
FD533297       --> CAATGGGAGATATGATGAAGACATCCTCCTTCGCTCTCACCGAAGTCAAG
FY452997       --> CGATGGGAGATATGATGAAGACATCCTCTTTCGCTCTCACCGAAGTCAAG
EY915823       --> CAATGGGAGATATGATGAAGACATCCTCCTTCGCTCTCACCGAAGTCAAG
EX748818       --> ..................................................

               401    -    451
UN22178        --> TACGTCGCCGGCGAGAACGTCAAACACGTCGTCCTCGAGAACGTCAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- TACGTCGCCGGCGAGAACGTCAAACACGTCGTCCTCGAGAACGTCAAAGA
EV545902       <-- TACGTCGCCGGCGAGAACGTCAAACACGTCGTCCTCGAGAACGTCAAAGA
FD566688       <-- TACGTCGCCGGCGAGAACGTCAAACACGTCGTCCTCGAGAACGTCAAAGA
FD966507       <-- .....................................AGAACGTCAAAGA
FD531774       <-- ................................................GA
EY911594       <-- ..................................................
EX752657       <-- ..................................................
EY909529       <-- ..................................................
FD562897       --> TACGTCGCCGGCGAGAACGTCAAACACGTCGTCCTCGAGAACGTCAAAGA
FD970056       --> TACGTCGCCGGCGAGAACGTCAAGCACGTCGTCCTCGAGAACGTCAAAGA
EX764653       --> TACGTGGCTGGCGAGAACGTCAAACACGTCGTCCTCGAGAACGTCAAAGA
FD533297       --> TACGTCGCCGGCGAGAACGTCAAACACGTCGTCCTCGAGAACGTCAAAGA
FY452997       --> TACGTAGCCGGCGAGAACGTCAAACACGTCGTCCTCGAGAACGTCAAAGA
EY915823       --> TACGTCGCCGGCGAGAACGTCAAACACGTCGTCCTCGAGAACGTCAAAGA
EX748818       --> ..................................................

               451    -    501
UN22178        --> AGCCACGCTCAAAGTCAGGTCCAGGCAAGAGAACATCGCCGGGGTGAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- AGCCACGCTCAAAGTCAGGTCCAGGCAAGAGAACATCGCCGGCGTGAAGC  Raphanus raphanistrum subsp. maritimus
EV545902       <-- AGCCACGCTCAAAGTCAGGTCCAGGCAAGAGAACATCGCCGGCGTGAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566688       <-- AGCCACGCTCAAAGTCCGGTCAAGGCAAGAGAACATCGCCGGGGTGAAGC  Raphanus sativus var. oleiformis
FD966507       <-- AGCCACGCTCAAAGTCAGGTCAAGGCAAGAGAACATCGCCGGGGTGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531774       <-- AGCCACGCTCAAAGTCAGGTCCAGGCAAGAGAATATCGCCGGCGTGAAGC  Raphanus raphanistrum subsp. maritimus
EY911594       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX752657       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY909529       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562897       --> AGCCACGCTCAAAGTCCGGTCAAGGCAAGAGAACATCGCCGGGGTGAAGC  Raphanus sativus var. oleiformis
FD970056       --> AGCCACGCTCAAAGTCAGGTCAAGGCAAGAGAACATCGCCGGGGTGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX764653       --> AGCCACGCTCAAAGTCAGGTCAAGGCAAGAGAACATCGCCGGGGTGAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD533297       --> AGCCACGCTCAAAGTCAGGTCCAGGCAAGAGAACATCGCCGGCGTGAAGC  Raphanus raphanistrum subsp. maritimus
FY452997       --> AGCCACGCTCAAAGTCCGGTCCAGGCAAGAGAACATCGCCGGAGTGAAGC  Raphanus sativus cv GSK3-1
EY915823       --> AGCCACGCTCAAAGTCAGGTCCAGGCAAGAGAACATCGCCGGCGTGAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748818       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN22178        --> TCCCCAAGTTCGATCATTTCTCCGAAGGAGAGACCAAGAACGACTTGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- TCCCCAAGTTCGATCACTTCTCCGAAGGAGAGACCAAGAACGACTTGACC  Raphanus raphanistrum subsp. maritimus
EV545902       <-- TCCCCAAGTTCGATCACTTCTCCGAAGGAGAGACCAAGAACGACTTGACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566688       <-- TCCCCAAGTTCGATCATTTCTCCGAAGGAGAGACCAAGAACGACTTGACC  Raphanus sativus var. oleiformis
FD966507       <-- TCCCCAAGTTCGGTCATTTCTCAGAAGGAGAGACCAAGAACGACTTGACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531774       <-- TCCCCAAGTTCGATCACTTCTCCGAAGGAGAGACCAAGAACGACCTGACC  Raphanus raphanistrum subsp. maritimus
EY911594       <-- ......................CGAAGGAGAGACCAAGAACGACTTGACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX752657       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY909529       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562897       --> TCCCCAAGTTCGATCATTTCTCCGAAGGAGAGACCAAGAACGACTTGACC  Raphanus sativus var. oleiformis
FD970056       --> TCCCCAAGTTCGGTCATTTCTCAGAAGGAGAGACCAAGAACGACTTGACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX764653       --> TCCCCAAGTTCGACCATTTCTCCGAAGGAGAGACCAAGAACGACTTGACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD533297       --> TCCCCAAGTTCGATCACTTCTCCGAAGGAGAGACCAAGAACGACTTGACC  Raphanus raphanistrum subsp. maritimus
FY452997       --> TCCCCAAGTTCGACCATTTCTCCGAAGGAGAGACCAAGAACGACTTGACC  Raphanus sativus cv GSK3-1
EY915823       --> TCCCCAAGTTCGATCACTTCTCCGAAGGAGAGACCAAGAACGACTTGACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748818       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN22178        --> GGTTTAGCTAGAGGTGGACAGCAGGTCCAAGCTTGCCGTGTGGCTTACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- GGTTTAGCGAGAGGTGGACAGCAGGTCCAAGCTTGCCGTGTGGCTTACGT  Raphanus raphanistrum subsp. maritimus
EV545902       <-- GGTTTAGCGAGAGGTGGACAGCAGGTCCAAGCTTGCCGTGTGGCTTACGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566688       <-- GGTTTAGCTAGAGGTGGGCAGCAAGTCCAAGCTTGCCGTGTGGCTTACGT  Raphanus sativus var. oleiformis
FD966507       <-- GGTTTAGCTAGAGGTGGACAGCAGGTCCAAGCTTGCCGTGTGGCTTACGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531774       <-- GGTTTAGCGAGAGGTGGACAGCAGGTCCAAGCTTGCCGTGTGGCTTACGT  Raphanus raphanistrum subsp. maritimus
EY911594       <-- GGTTTAGCGAGAGGTGGACAGCAGGTCCAAGCTTGCCGTGTGGCTTACGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX752657       <-- .............................................TACGT  Raphanus raphanistrum subsp. maritimus
EY909529       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562897       --> GGTTTAGCTAGAGGTGGGCAGCAAGTCCAAGCTTGCCGTGTGGCTTACGT  Raphanus sativus var. oleiformis
FD970056       --> GGTTTAGCTAGAGGTGGACAGCAGGTCCAAGCTTGCCGTGTGGCTTACGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX764653       --> GGTTTAGCTAGAGGTGGACAGCAGGTCCAAGCTTGCCGTGTGGCTTACGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD533297       --> GGTTTAGCGAGAGGTGGACAGCAGGTCCAAGCTTGCCGTGTGGCTTACGT  Raphanus raphanistrum subsp. maritimus
FY452997       --> GGTTTAGCTAGAGGTGGACAGCAGGTCCAAGCTTGCCGTGTGGCTTACGT  Raphanus sativus cv GSK3-1
EY915823       --> GGTTTAGCGAGAGGTGGACAGCAGGTCCAAGCTTGCCGTGTGGCTTACGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748818       --> ...................................CCGTGTGGCTTACGT  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN22178        --> GAAAGCCATTGAGGTTCTAGTCGAGCTTGCTTCTCTCCAGACTTCGTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- GAAAGCCATTGAGGTTCTAGTCGAGCTTGCTTCTCTCCAGACTTCGTTCT
EV545902       <-- GAAAGCCATTGAGGTTCTAGTCGAGCTTGCTTCTCTCCAGACTTCGTTCT
FD566688       <-- GAAAGCCATTGAGGTTCTAGCCGAGCTTGCTTCTCTCCAGACTTCGTTCT
FD966507       <-- GAAAGCCATTGAGGTGCTTGTCGAGCTTGCTTCTCTCCAGACTTCGTTCT
FD531774       <-- GAAAGCCATTGAGGTTCTAGTCGAGCTTGCTTCTCTCCAGACTTCGTTCT
EY911594       <-- GAAAGCCATTGAGGTTCTAGTCGAGCTTGCTTCTCTCCAGACTTCGTTCT
EX752657       <-- GAAAGCCATTGAGGTTCTAGTCGAGCTTGCTTCTCTCCAGACTTCGTTCT
EY909529       <-- ...........................................TCGTTCT
FD562897       --> GAAAGCCATTGAGGTTCTAGCCGAGCTTGCTTCTCTCCAGACTTCGTTCT
FD970056       --> GAAAGCCATTGAGGTGCTTGTCGAGCTTGCTTCTCTCCAGACTTCGTTCT
EX764653       --> GAAAGCCATTGAGGTGCTTGTCGAGCTTGCTTCTCTCCAGACTTCGTTCT
FD533297       --> GAAAGCCATTGAGGTTCTAGTCGAGCTTGCTTCTCTCCAGACTTCGTTCT
FY452997       --> GAAAGCCATTGAGGTTCTAGTCGAGCTTGCTTCTCTCCAGACTTCGTTCT
EY915823       --> GAAAGCCATTGAGGTTCTAGTCGAGCTTGCTTCTCTCCAGACTTCGTTCT
EX748818       --> GAAAGCCATTGAGGTTCTAGTCGAGCTTGCTTCTCTCCAGACTTCGTTCT

               651    -    701
UN22178        --> TGACGCTTGATGAAGCGATCAAGACGACTAATCGGAGGGTGAACGCTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- TGACGCTTGATGAAGCGATCAAGACGACTAATCGGAGGGTGAACGCTCTG  Raphanus raphanistrum subsp. maritimus
EV545902       <-- TGACGCTTGATGAAGCGATCAAGACGACTAATCGGAGGGTGAACGCTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566688       <-- TGACGCTTGACGAAGCGATCAAGACGACTAATCGGAGGGTGAACGCTCTG  Raphanus sativus var. oleiformis
FD966507       <-- TGACGCTTGACGAAGCGATCAAGACGACTAATCGGAGGGTTAACGCTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531774       <-- TGACGCTCGATGAAGCGATCAAGACGACTAATCGGAGGGTGAACGCTTTG  Raphanus raphanistrum subsp. maritimus
EY911594       <-- TGACGCTTGATGAAGCGATCAAGACGACTAATCGGAGGGTGAACGCTCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX752657       <-- TGACGCTTGATGAAGCGATCAAGACGACTAATCGGAGGGTGAATGCTCTG  Raphanus raphanistrum subsp. maritimus
EY909529       <-- TGACGCTTGATGAAGCGATCAAGACGACTAATCGGAGGGTGAACGCTCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562897       --> TGACGCTTGACGAAGCGATCAAGACGACTAATCGGAGGGTGAACGCTCTG  Raphanus sativus var. oleiformis
FD970056       --> TGACGCTTGACGAAGCGATCAAGACGACTAATCGGAGGGTTAACGCTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX764653       --> TGACGCTTGACGAAGCGATCAAGACGACTAATCGGAGGGTTAACGCTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD533297       --> TGACGCTTGATGAAGCGATCAAGACGACTAATCGGAGGGTGAACGCTCTG  Raphanus raphanistrum subsp. maritimus
FY452997       --> TGACGCTTGACGAAGCGATCAAGACGACTAATCGGAGGGTGAACGCTCTG  Raphanus sativus cv GSK3-1
EY915823       --> TGACGCTTGATGAAGCGATCAAGACGACTAATC.................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748818       --> TGACGCTTGATGAAGCGATCAAGACGACTAATCGGAGGGTGAATGCTCTG  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN22178        --> GAGAACGTGGTGAAACCGAAGATTGAGAATACGATTAGTTACATCAAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- GAGAACGTGGTGAAACCGAAGATTGAGAATACGATTAGTTACGTCAAGGG
EV545902       <-- GAGAACGTGGTGAAACCGAAGATTGAGAATACGATCAGTTACATCAAGGG
FD566688       <-- GAGAACGTGGTGAAACCGAAGATTGAGAATACGATCAGTTACATCAAAGG
FD966507       <-- GAGAACGTGGTGAAACCGAAGATTGAGAATACGATTAGTTACATCAAGGG
FD531774       <-- GAGAACGTGGTGAAACCGAAGATTGAGAATACGATTAGTTACATCAAGGG
EY911594       <-- GAGAACGTGGTGAAACCGAAGATTGAGAATACGATTAGTTACATCAAGGG
EX752657       <-- GAGAAC-TGGTGAAACCGAAGATTGAGAATACGATTAGTTACATCAAGGG
EY909529       <-- GAGAACGTGGTGAAACCGAAGATTGAGAATACGATTAGTTACATCAAGGG
FD562897       --> GAGAACGTGGTGAAACCGA-GATTGAGAAT....................
FD970056       --> GAGAACGTGGTGAAACCGAAGATTGAGAATACGATTAGTTACA.......
EX764653       --> GAGAACGTGGTGAAACCGAAGATTGAGAATACGATTAGTTACATCAAGGG
FD533297       --> GAGAACGTGGTGAAACCGAAGATTGAGAATACGATTAGTTACGTCAAGGG
FY452997       --> GAGAACGTGGTGAAACCGAAGATTGAGAATACGATCAGTTACATCAAGGG
EY915823       --> ..................................................
EX748818       --> GAGAAC-TGGTGAAACCGAAGATTGAGAATACGATTAGTTACATCAAGGG

               751    -    801
UN22178        --> AGAGCTTGATGAGCTCGAGAGGGAAGATTTCTTCAGGCTGAAGAAGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- AGAGCTTGATGAGCTCGAGATGGAAGATTTCTTCAGGCTGAAGAAGATTC
EV545902       <-- AGAGCTTGATGAGCTCGAGAGGGAAGATTTCTTTAGGCTGAAGAAGATTC
FD566688       <-- AGAGCTTGATGAGCTCGAGAGGGAAGATTTCTTCAAGCTGAAGAAGATTC
FD966507       <-- AGAGCTTGATGAGCTCGAGAGGAAAGATTTCTTTAGGCTGAAGAAGATTC
FD531774       <-- AGAGCTTGATGAGCTCGAGAGGGAAGATTTTTTCAGGCTGAAGAAGATTC
EY911594       <-- AGAGCTTGATGAGCTCGAGAGGGAAGATTTCTTCAGGCTGAAGAAGATTC
EX752657       <-- AGAGCTTGATGAGCTCGAGAGGGAAGATTTCTTCAGGCTGAAGAAGATTC
EY909529       <-- AGAGCTTGATGAGCTCGAGAGGGAATATTTCTTCAGGCTGAAGAAGATTC
FD562897       --> ..................................................
FD970056       --> ..................................................
EX764653       --> AGAGCTTGATGAGCTCGAGAGGGAA.........................
FD533297       --> AGAGCTTGATGAGCTCGAGATGGAAGATTTCTTCAG-CTGAAGAAGATTC
FY452997       --> AGAGCTTGATGAGCTCGAGAGGGAAGATTTCTTTAGGCTGAAGAAGATTC
EY915823       --> ..................................................
EX748818       --> AGAGCTTGATGAGCTCGAGAGGGAAGATTTCTTCAGGCTGAAGAAGATTC

               801    -    851
UN22178        --> AGGGGTACAAGAGGAGGGAAGTCGAGAGACAAGCTGCTAATGCTAAGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- AGGGGTACAAGAGGAGGGAAGTCGAGAGACAAGCTGCTAATGCTAAGGCC
EV545902       <-- AGGGATACAAGAGGAGGGAAGTCGAGAGACAGGCTGCTAATGCTAAGGCC
FD566688       <-- AGGGGTACAAGAGGAGGGAAGTCGAGAGACAGGCTGCTAATGCTAAGGCC
FD966507       <-- AGGGGTACAAGAGGAGGGAAGTCGAGAGACAGGCGGCTAATGCTAAGGCC
FD531774       <-- AGGGGTACAAGAGGAGGGAAGTCGAGAGACAAGCTGCTAATGCTAAGGCC
EY911594       <-- AGGGGTACAAGAGGAGGGAAGTCGAGAGACAAGCTGCTAATGCTAAGGCC
EX752657       <-- AGGGGTACAAGAGGAGGGAAGTCGAGAGACAAGCTGCTAATGCTAAGGCC
EY909529       <-- AGGGGTACAAGAGGAGGGAAGTCGAGAGACAAGCTGCTAATGCTAAGGCC
FD562897       --> ..................................................
FD970056       --> ..................................................
EX764653       --> ..................................................
FD533297       --> ACGGGTACA.........................................
FY452997       --> AGGGATACAAGAGGAGGGAAGTCGAGAGACAGGCTGCTAATGCTAAGGCC
EY915823       --> ..................................................
EX748818       --> AGGGGTACAAGAGGAGGGAAGTCGAGAGACAAGCTGCTAATGCTAAGGCC

               851    -    901
UN22178        --> TTTGCTGAGGAAATGGTTCTTGAAGGGATCTCTATGCAGAGAGGGATTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- TTTGCTGAGGAAATGGTTCTTGAAGGGATCTCTATGCAGAGAGGGATTTC
EV545902       <-- TTTGCTGAGGAAATGGTTCTTGAAGGGATCTCTATGCAGAGAGGGATTTC
FD566688       <-- TTTGCTGAGGAAATGGTTCTTGAAGGGATCTCTATGCAGAGAGGGATTTC
FD966507       <-- TTTGCTGAGGAAATGGTTCTTGAAGGGATCTCTATGCAGAGAGGGATTTC
FD531774       <-- TTTGCTGAGGAAATGGTTCTTGAAGGGATCTCTATGCAGAGAGGGATTTC
EY911594       <-- TTTGCTGAGGAAATGGTTCTTGAAGGGATCTCTATGCAGAGAGGGATTTC
EX752657       <-- TTTGCTGAGGAAATGGTTCTTGAAGGGATCTCTATGCAGAGAGGGATTTC
EY909529       <-- TTTGCTGAGGAAATGGTTCTTGAAGGGATCTCTATGCAGAGAGGGATTTC
FD562897       --> ..................................................
FD970056       --> ..................................................
EX764653       --> ..................................................
FD533297       --> ..................................................
FY452997       --> TTTGCTGAGGAAATGGTTCTTGAAGGGATCTCTATGCAGAGAGGGATTTC
EY915823       --> ..................................................
EX748818       --> TTTGCTGAGGAAATGGTTCTTGAAGGGATCTCTATGCAGAGAGGGATTTC

               901    -    951
UN22178        --> GATAAACGCTGCTCGTGATTTACTTGCTGGTGGTGCAGAGAAGGATGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- GATAAACGCTACTCGTGATTTACTTGCTGGTGGTGCAGAGAAGGATGCAG
EV545902       <-- GATAAACGCTGCTCGTGATTTACTTGCTGGTGGTGCAGAGAAGGATGCAG
FD566688       <-- GATAAACGCTGCTCGTGATATACTTGCTGGTGGTGCGGAGAAGGATGCAG
FD966507       <-- GATAAACGCTGCTCGTGATATCCTTGCTGGTGGTGCGGAGAAGGATGCAG
FD531774       <-- GATAAACGCTGCTCGTGATTTACTTGCTGGTGGTGCAGAGAAGGATGCAG
EY911594       <-- GATAAACGCTGCTCGTGATTTACTTGCTGGTGGTGCAGAGAAGGATGCAG
EX752657       <-- GATAAACGCTGCTCGTGATTTACTTGCTGGTGGTGCAGAGAAGGATGCAG
EY909529       <-- GATAAACGCTGCTCGTGATTTACTTGCTGGTGGTGCAGAGAAGGATGCAG
FD562897       --> ..................................................
FD970056       --> ..................................................
EX764653       --> ..................................................
FD533297       --> ..................................................
FY452997       --> GATAAACGCTGCTCGTGATTTACTTGCTG.....................
EY915823       --> ..................................................
EX748818       --> GATAAACGCTGCTCGTGATTTACTTGCTGGTGGTGCAGAGAAGGATGCAG

               951    -   1001
UN22178        --> ACATTATTTTTTGAGGTGTGCGTGTGTGTGTCTGAGAGGCTCTCTATTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- ACATTATTTTCTGAGGTGTGCGTGTGTGTGTCTGAGAGGCTCTCTATTTA
EV545902       <-- ACATTATTTTTTGAGGTGTGCGTGTGTGTGTCTGTGAGGCTCTCTATTTA
FD566688       <-- ACATTATTTTTTGAGGTGTGCGTGTGTGTGTCTGAGAGGCTCTCTATTTA
FD966507       <-- ACATTATTTTTTGAGATGTGTGTGTGTGTGTCTGAGAGGCTCTCTATTTA
FD531774       <-- ACATTATTTTTTGAGTTGTGCGTGTGTGTGTTTGAGAGGCTCTCTATTTA
EY911594       <-- ACATTATTTTTTGAGGTGTGCGTGTGTGTGTTTGAGAGGCTCTCTATTTA
EX752657       <-- ACATTATTTTTTGAGGTGTGCGTGTGTGTGTCTGAGAGGCTCTCTATTTA
EY909529       <-- ACATTATTTTCTGAGGTGTGCGTGTGTGTGTCTGAGAGGCTCTCTATTTA
FD562897       --> ..................................................
FD970056       --> ..................................................
EX764653       --> ..................................................
FD533297       --> ..................................................
FY452997       --> ..................................................
EY915823       --> ..................................................
EX748818       --> ACATTATTTTCTGAGGTGTGCGTGTGTGTGTCTGAGAGGCTCTCTATTTA

               1001   -   1051
UN22178        --> TATTTTTGTTTGTGATTGTTTGGTTTATTAATCGGTTCATCGGAGTTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- TATTTTTGTTTGTGATTGTTTGGTTTATTAATCGGTTCATCGGAGTTTAT
EV545902       <-- TATTTTTGTTTGTGATTGTTTGGTTTATTAATCGGTTCATCGGAGTTTAT
FD566688       <-- TATTTTTGTTTGTGATTGTTTGGTTTATTAATCGGTTCATCGGAGTTTAT
FD966507       <-- TATTTTTGTTTGTGATTGTTTGGTTTATTAATCGGTTCATCGGAGTTTAT
FD531774       <-- TATTTTTGTTTGTGATTGTTTGGTTTATTAATCGGTTCATCGGAGTTTAT
EY911594       <-- TATTTTTGTTTGTGATTGTTTGGTTTATTAATCGGTTCATCGGAGTTTAT
EX752657       <-- TATTTTTGTTTGTGATTGTTTGGTTTATTAATCGGTTCATCGGAGTTTAT
EY909529       <-- TATTTTTGTTTGTGATTGTTTGGTTTATTAATCGGTTCATCGGAGTTTAT
FD562897       --> ..................................................
FD970056       --> ..................................................
EX764653       --> ..................................................
FD533297       --> ..................................................
FY452997       --> ..................................................
EY915823       --> ..................................................
EX748818       --> TATTTTTGTTTGTGATTGTTTGGTTTATTAATCGGTTCATCGGAGTTTAT

               1051   -   1101
UN22178        --> GTTTCTTCAAATAAAATGGATTTGATGTAGATGAAAGATTGTTGTATCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- GTTTCTTCAAATAAAATGGATTTGATGT......................
EV545902       <-- GTTTCTTCAAATAAAAGGGATTTGATGT......................
FD566688       <-- GTTTCCTCAAATAAAATGGATTTGATGTAGATGAAGGATTGTTGTATCAT
FD966507       <-- GTTTCTTCAAATAAAATGGATTTGATGTAGATGAAAGATTGTTGTATCAT
FD531774       <-- GTTTCTTCAAATAAAATGGATTTGATGTAGATGAAAGATTGTTGTATCAT
EY911594       <-- GTTTCTTCAAATAAAATGGATTTGATGTAGATGAAAGATTGTTGTATCAT
EX752657       <-- GTTTCTTCAAATAAAATGGATTTGATGTAGATGAAAGATTGTTGTATCAT
EY909529       <-- GTTTCTTCAAATAAAATGGATTTGATGTAGATGAAAGATTGTTGTATCAT
FD562897       --> ..................................................
FD970056       --> ..................................................
EX764653       --> ..................................................
FD533297       --> ..................................................
FY452997       --> ..................................................
EY915823       --> ..................................................
EX748818       --> GTTTCTTCAAATAAAATGGATTTGATGTAGATGAAAGATTGTTGTATCAT

               1101   -   1151
UN22178        --> CTTGAGTTGTGATTTGCTATGATTTTCCTGAAGAGGTTTGTGATTGTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- ..................................................
EV545902       <-- ..................................................
FD566688       <-- CTTGAGTTGTGATTTGCTATGATTTTCCTGAAGAGGTTTGTGATTGTTAC
FD966507       <-- CTTGAGTTGTGATTTGCTATGATTT-CCTGAAGAGGTTTGTGATTGTTAC
FD531774       <-- CTTGAGTTGTGATTTGCTATG.............................
EY911594       <-- CTTGAGTTGTGATTTTCTATGATTTTCCTG....................
EX752657       <-- CTTGAGTTGTGATTTGCTATGATTTTCCTGAAGAGGTTTGTG........
EY909529       <-- CTTGAGTTGTGATTTGCTATGATTTTCCTGAAGAGGTTTGTGATTGTTAC
FD562897       --> ..................................................
FD970056       --> ..................................................
EX764653       --> ..................................................
FD533297       --> ..................................................
FY452997       --> ..................................................
EY915823       --> ..................................................
EX748818       --> CTTGAGTTGTGATTTGCTATGATTTTCCTGAAGAGGTTTGTGATTGTT..

               1151   -   1201
UN22178        --> TCTTGTGTAATGATTAATTACCTTGTTTCAAATAAGTATGGATGTTACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529523       <-- ..................................................
EV545902       <-- ..................................................
FD566688       <-- TCTTGTGTAATGATTAATTACCTTGTTTC.....................
FD966507       <-- TCTTGTGTAATGATTAATTACCTTGTTTC.....................
FD531774       <-- ..................................................
EY911594       <-- ..................................................
EX752657       <-- ..................................................
EY909529       <-- TCTTGTGTAATGATTAATTACCTTGTTTCAAATAAGTATGGATGTTACAT
FD562897       --> ..................................................
FD970056       --> ..................................................
EX764653       --> ..................................................
FD533297       --> ..................................................
FY452997       --> ..................................................
EY915823       --> ..................................................
EX748818       --> ..................................................

               1201   -   1251
UN22178        --> GTTGAC
                   ~~~~~~
FD529523       <-- ......
EV545902       <-- ......
FD566688       <-- ......
FD966507       <-- ......
FD531774       <-- ......
EY911594       <-- ......
EX752657       <-- ......
EY909529       <-- GTTGAC
FD562897       --> ......
FD970056       --> ......
EX764653       --> ......
FD533297       --> ......
FY452997       --> ......
EY915823       --> ......
EX748818       --> ......